Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018601.t1 | XP_024632961.1 | 80.6 | 800 | 87 | 6 | 1 | 732 | 1 | 800 | 0.00E+00 | 1272.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018601.t1 | Q9SZL8 | 27.3 | 608 | 388 | 11 | 32 | 625 | 70 | 637 | 6.6e-62 | 240.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018601.t1 | D3YBB9 | 74.0 | 772 | 145 | 4 | 1 | 724 | 49 | 812 | 0.0e+00 | 1136.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene018601.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018601.t1 | MTR_0558s0020 | 87.500 | 296 | 36 | 1 | 1 | 295 | 1 | 296 | 0.0 | 549 |
| MS.gene018601.t1 | MTR_1g083640 | 83.099 | 284 | 32 | 1 | 1 | 268 | 1 | 284 | 4.70e-173 | 497 |
| MS.gene018601.t1 | MTR_8g446020 | 73.898 | 295 | 38 | 1 | 1 | 295 | 1 | 256 | 5.27e-153 | 445 |
| MS.gene018601.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 65 | 301 | 1 | 237 | 4.25e-143 | 424 |
| MS.gene018601.t1 | MTR_6g090505 | 52.062 | 194 | 30 | 3 | 384 | 575 | 230 | 362 | 2.88e-49 | 177 |
| MS.gene018601.t1 | MTR_2g014100 | 82.449 | 245 | 34 | 1 | 1 | 236 | 1 | 245 | 9.90e-143 | 418 |
| MS.gene018601.t1 | MTR_0337s0040 | 72.031 | 261 | 33 | 2 | 1 | 260 | 1 | 222 | 1.54e-124 | 371 |
| MS.gene018601.t1 | MTR_3g008240 | 84.236 | 203 | 31 | 1 | 1 | 202 | 1 | 203 | 1.75e-118 | 354 |
| MS.gene018601.t1 | MTR_4g040430 | 83.663 | 202 | 29 | 1 | 1 | 202 | 1 | 198 | 7.14e-118 | 352 |
| MS.gene018601.t1 | MTR_0337s0060 | 63.889 | 288 | 32 | 5 | 435 | 719 | 21 | 239 | 1.97e-110 | 335 |
| MS.gene018601.t1 | MTR_5g071590 | 74.444 | 180 | 33 | 2 | 1 | 167 | 1 | 180 | 1.70e-90 | 281 |
| MS.gene018601.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 91 | 232 | 3 | 144 | 3.57e-87 | 271 |
| MS.gene018601.t1 | MTR_0019s0290 | 82.353 | 153 | 24 | 1 | 84 | 233 | 8 | 160 | 4.27e-86 | 268 |
| MS.gene018601.t1 | MTR_3g028680 | 81.013 | 158 | 27 | 1 | 578 | 732 | 1 | 158 | 4.35e-84 | 265 |
| MS.gene018601.t1 | MTR_2g067090 | 78.065 | 155 | 31 | 1 | 581 | 732 | 99 | 253 | 1.31e-75 | 246 |
| MS.gene018601.t1 | MTR_4g133495 | 60.963 | 187 | 47 | 2 | 531 | 714 | 83 | 246 | 1.34e-66 | 221 |
| MS.gene018601.t1 | MTR_4g133340 | 60.963 | 187 | 47 | 2 | 531 | 714 | 83 | 246 | 1.34e-66 | 221 |
| MS.gene018601.t1 | MTR_1281s0010 | 82.569 | 109 | 19 | 0 | 19 | 127 | 1 | 109 | 1.37e-57 | 191 |
| MS.gene018601.t1 | MTR_6g051425 | 32.075 | 318 | 185 | 6 | 40 | 341 | 22 | 324 | 9.57e-39 | 147 |
| MS.gene018601.t1 | MTR_4g008820 | 83.750 | 80 | 12 | 1 | 1 | 79 | 125 | 204 | 1.42e-31 | 131 |
| MS.gene018601.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 1 | 79 | 91 | 178 | 4.17e-31 | 121 |
| MS.gene018601.t1 | MTR_2g067130 | 62.963 | 81 | 24 | 2 | 655 | 732 | 46 | 123 | 4.09e-22 | 94.0 |
| MS.gene018601.t1 | MTR_1g070355 | 28.287 | 251 | 161 | 4 | 41 | 291 | 80 | 311 | 2.18e-19 | 92.8 |
| MS.gene018601.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 1.68e-14 | 77.0 |
| MS.gene018601.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 259 | 294 | 14 | 49 | 1.11e-13 | 67.0 |
| MS.gene018601.t1 | MTR_1g013060 | 30.093 | 216 | 132 | 8 | 40 | 253 | 29 | 227 | 5.71e-13 | 69.7 |
| MS.gene018601.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 7.90e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018601.t1 | AT4G38180 | 27.569 | 613 | 380 | 12 | 32 | 625 | 70 | 637 | 9.27e-68 | 238 |
| MS.gene018601.t1 | AT4G15090 | 26.048 | 668 | 423 | 16 | 50 | 701 | 66 | 678 | 2.95e-60 | 218 |
| MS.gene018601.t1 | AT4G15090 | 26.048 | 668 | 423 | 16 | 50 | 701 | 66 | 678 | 2.95e-60 | 218 |
| MS.gene018601.t1 | AT4G15090 | 26.048 | 668 | 423 | 16 | 50 | 701 | 66 | 678 | 2.95e-60 | 218 |
| MS.gene018601.t1 | AT4G15090 | 26.048 | 668 | 423 | 16 | 50 | 701 | 66 | 678 | 2.95e-60 | 218 |
| MS.gene018601.t1 | AT4G15090 | 26.048 | 668 | 423 | 16 | 50 | 701 | 66 | 678 | 2.95e-60 | 218 |
| MS.gene018601.t1 | AT2G27110 | 25.254 | 689 | 413 | 19 | 10 | 679 | 29 | 634 | 5.05e-52 | 194 |
| MS.gene018601.t1 | AT2G27110 | 25.254 | 689 | 413 | 19 | 10 | 679 | 29 | 634 | 5.05e-52 | 194 |
| MS.gene018601.t1 | AT2G27110 | 27.686 | 484 | 303 | 11 | 213 | 679 | 36 | 489 | 1.90e-51 | 191 |
| MS.gene018601.t1 | AT3G06250 | 25.822 | 608 | 338 | 17 | 34 | 621 | 189 | 703 | 6.41e-51 | 190 |
| MS.gene018601.t1 | AT3G06250 | 25.822 | 608 | 338 | 17 | 34 | 621 | 189 | 703 | 6.41e-51 | 190 |
| MS.gene018601.t1 | AT3G06250 | 25.822 | 608 | 338 | 17 | 34 | 621 | 189 | 703 | 6.41e-51 | 190 |
| MS.gene018601.t1 | AT1G76320 | 24.846 | 648 | 407 | 18 | 50 | 679 | 12 | 597 | 4.22e-50 | 187 |
| MS.gene018601.t1 | AT1G76320 | 25.000 | 648 | 406 | 19 | 50 | 679 | 12 | 597 | 1.84e-49 | 186 |
| MS.gene018601.t1 | AT1G76320 | 25.000 | 648 | 406 | 19 | 50 | 679 | 12 | 597 | 1.92e-49 | 186 |
| MS.gene018601.t1 | AT1G76320 | 25.000 | 648 | 406 | 19 | 50 | 679 | 12 | 597 | 1.92e-49 | 186 |
| MS.gene018601.t1 | AT5G18960 | 24.516 | 620 | 354 | 18 | 24 | 621 | 200 | 727 | 3.23e-46 | 177 |
| MS.gene018601.t1 | AT5G18960 | 24.516 | 620 | 354 | 18 | 24 | 621 | 200 | 727 | 3.23e-46 | 177 |
| MS.gene018601.t1 | AT3G22170 | 22.792 | 702 | 441 | 16 | 34 | 713 | 69 | 691 | 9.60e-46 | 176 |
| MS.gene018601.t1 | AT3G22170 | 22.792 | 702 | 441 | 16 | 34 | 713 | 69 | 691 | 9.60e-46 | 176 |
| MS.gene018601.t1 | AT4G38170 | 25.166 | 453 | 287 | 12 | 235 | 663 | 24 | 448 | 6.79e-44 | 167 |
| MS.gene018601.t1 | AT1G10240 | 25.714 | 595 | 366 | 21 | 49 | 619 | 62 | 604 | 3.02e-42 | 164 |
| MS.gene018601.t1 | AT1G10240 | 25.714 | 595 | 366 | 21 | 49 | 619 | 62 | 604 | 3.02e-42 | 164 |
| MS.gene018601.t1 | AT5G28530 | 24.188 | 616 | 376 | 18 | 40 | 620 | 60 | 619 | 1.47e-41 | 162 |
| MS.gene018601.t1 | AT5G28530 | 24.026 | 616 | 373 | 19 | 40 | 620 | 60 | 615 | 1.05e-40 | 159 |
| MS.gene018601.t1 | AT5G28530 | 24.026 | 616 | 373 | 19 | 40 | 620 | 60 | 615 | 1.05e-40 | 159 |
| MS.gene018601.t1 | AT2G32250 | 23.301 | 721 | 424 | 22 | 4 | 703 | 10 | 622 | 2.98e-39 | 155 |
| MS.gene018601.t1 | AT4G19990 | 26.819 | 481 | 306 | 11 | 219 | 681 | 106 | 558 | 3.76e-39 | 155 |
| MS.gene018601.t1 | AT2G32250 | 23.301 | 721 | 424 | 22 | 4 | 703 | 10 | 622 | 4.97e-39 | 155 |
| MS.gene018601.t1 | AT2G32250 | 23.301 | 721 | 424 | 22 | 4 | 703 | 10 | 622 | 4.97e-39 | 155 |
| MS.gene018601.t1 | AT2G32250 | 23.301 | 721 | 424 | 22 | 4 | 703 | 10 | 622 | 6.63e-39 | 155 |
| MS.gene018601.t1 | AT2G32250 | 23.301 | 721 | 424 | 22 | 4 | 703 | 10 | 622 | 6.63e-39 | 155 |
| MS.gene018601.t1 | AT2G32250 | 23.301 | 721 | 424 | 22 | 4 | 703 | 10 | 622 | 6.63e-39 | 155 |
| MS.gene018601.t1 | AT4G19990 | 26.819 | 481 | 306 | 11 | 219 | 681 | 163 | 615 | 7.52e-39 | 154 |
| MS.gene018601.t1 | AT4G19990 | 26.819 | 481 | 306 | 11 | 219 | 681 | 163 | 615 | 8.20e-39 | 154 |
| MS.gene018601.t1 | AT4G19990 | 26.819 | 481 | 306 | 11 | 219 | 681 | 163 | 615 | 8.20e-39 | 154 |
| MS.gene018601.t1 | AT4G19990 | 26.819 | 481 | 306 | 11 | 219 | 681 | 177 | 629 | 9.90e-39 | 154 |
| MS.gene018601.t1 | AT4G19990 | 26.819 | 481 | 306 | 11 | 219 | 681 | 163 | 615 | 1.09e-38 | 154 |
| MS.gene018601.t1 | AT4G19990 | 26.819 | 481 | 306 | 11 | 219 | 681 | 163 | 615 | 1.09e-38 | 154 |
| MS.gene018601.t1 | AT2G32250 | 23.133 | 683 | 401 | 19 | 41 | 703 | 3 | 581 | 2.86e-38 | 152 |
| MS.gene018601.t1 | AT2G32250 | 23.133 | 683 | 401 | 19 | 41 | 703 | 3 | 581 | 3.27e-38 | 152 |
| MS.gene018601.t1 | AT1G80010 | 24.359 | 624 | 367 | 22 | 41 | 622 | 101 | 661 | 2.84e-34 | 140 |
| MS.gene018601.t1 | AT1G52520 | 22.913 | 611 | 379 | 18 | 41 | 622 | 91 | 638 | 4.14e-32 | 133 |
| MS.gene018601.t1 | AT5G28530 | 21.782 | 606 | 340 | 21 | 40 | 620 | 60 | 556 | 2.40e-22 | 102 |
| MS.gene018601.t1 | AT5G28530 | 21.617 | 606 | 337 | 22 | 40 | 620 | 60 | 552 | 1.50e-21 | 100 |
Find 113 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 7.4:-11353709 | MS.gene018601:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 7.4:+11352883 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 7.4:-11353751 | MS.gene018601:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 7.4:-11354802 | MS.gene018601:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 7.4:-11354299 | MS.gene018601:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 7.4:-11354266 | MS.gene018601:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 7.4:+11354172 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 7.4:+11352889 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 7.4:-11353977 | MS.gene018601:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 7.4:-11353037 | MS.gene018601:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 7.4:+11354154 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 7.4:+11354752 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 7.4:-11353454 | MS.gene018601:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 7.4:-11353877 | MS.gene018601:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 7.4:-11353045 | MS.gene018601:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 7.4:-11354745 | MS.gene018601:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 7.4:-11354753 | MS.gene018601:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 7.4:-11353878 | MS.gene018601:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 7.4:+11353161 | None:intergenic |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 7.4:+11355282 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 7.4:-11352897 | MS.gene018601:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 7.4:+11352907 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 7.4:-11353577 | MS.gene018601:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 7.4:-11353012 | MS.gene018601:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 7.4:-11355511 | MS.gene018601:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 7.4:-11353329 | MS.gene018601:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 7.4:+11353406 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 7.4:-11355440 | MS.gene018601:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 7.4:+11353405 | None:intergenic |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 7.4:-11355357 | MS.gene018601:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 7.4:-11355105 | MS.gene018601:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 7.4:-11355223 | MS.gene018601:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 7.4:+11354161 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7.4:-11355240 | MS.gene018601:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 7.4:+11353228 | None:intergenic |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 7.4:-11355075 | MS.gene018601:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 7.4:-11355586 | MS.gene018601:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 7.4:-11354087 | MS.gene018601:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 7.4:-11353923 | MS.gene018601:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 7.4:-11353328 | MS.gene018601:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 7.4:-11355391 | MS.gene018601:CDS |
| GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 7.4:-11353371 | MS.gene018601:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 7.4:-11355030 | MS.gene018601:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 7.4:+11353575 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 7.4:+11355246 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 7.4:-11355453 | MS.gene018601:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 7.4:-11352936 | MS.gene018601:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 7.4:-11354962 | MS.gene018601:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 7.4:+11355135 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 7.4:-11355397 | MS.gene018601:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 7.4:-11353561 | MS.gene018601:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 7.4:+11354286 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 7.4:-11353976 | MS.gene018601:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 7.4:-11354949 | MS.gene018601:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 7.4:-11353737 | MS.gene018601:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 7.4:+11353657 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 7.4:-11355043 | MS.gene018601:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 7.4:+11354857 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 7.4:-11352937 | MS.gene018601:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 7.4:+11355147 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 7.4:-11353890 | MS.gene018601:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 7.4:-11353392 | MS.gene018601:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 7.4:+11354991 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 7.4:-11353718 | MS.gene018601:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 7.4:-11353872 | MS.gene018601:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 7.4:-11355187 | MS.gene018601:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 7.4:+11353412 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 7.4:+11353769 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 7.4:-11355346 | MS.gene018601:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 7.4:-11353391 | MS.gene018601:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 7.4:+11353580 | None:intergenic |
| AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 7.4:-11353372 | MS.gene018601:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 7.4:+11353774 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 7.4:-11353560 | MS.gene018601:intron |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 7.4:-11355345 | MS.gene018601:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 7.4:-11355521 | MS.gene018601:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 7.4:+11354141 | None:intergenic |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 7.4:-11353171 | MS.gene018601:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 7.4:-11354895 | MS.gene018601:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 7.4:-11355562 | MS.gene018601:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 7.4:-11355027 | MS.gene018601:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 7.4:-11353085 | MS.gene018601:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 7.4:-11355188 | MS.gene018601:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 7.4:+11353656 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 7.4:+11352925 | None:intergenic |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 7.4:+11353635 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 7.4:-11355597 | MS.gene018601:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 7.4:-11355036 | MS.gene018601:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 7.4:-11353044 | MS.gene018601:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 7.4:-11354155 | MS.gene018601:intron |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 7.4:-11353049 | MS.gene018601:CDS |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 7.4:-11353422 | MS.gene018601:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 7.4:+11352969 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 7.4:-11354956 | MS.gene018601:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 7.4:-11355042 | MS.gene018601:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 7.4:-11354953 | MS.gene018601:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 7.4:-11353082 | MS.gene018601:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 7.4:-11353659 | MS.gene018601:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 7.4:-11353574 | MS.gene018601:CDS |
| TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 7.4:+11353137 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 7.4:+11355297 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 7.4:+11353921 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 7.4:-11355022 | MS.gene018601:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 7.4:+11353407 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 7.4:-11354086 | MS.gene018601:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 7.4:+11353164 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 7.4:-11353736 | MS.gene018601:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 7.4:+11353186 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 7.4:+11353615 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 7.4:-11353060 | MS.gene018601:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 7.4:+11353310 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 7.4:-11354159 | MS.gene018601:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 7.4:-11353327 | MS.gene018601:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACCATAATTATAGTTTAA+TGG | + | chr7.4:11355370-11355389 | None:intergenic | 15.0% |
| !! | AAACCATTAAACTATAATTA+TGG | - | chr7.4:11355364-11355383 | MS.gene018601:CDS | 15.0% |
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr7.4:11355123-11355142 | MS.gene018601:CDS | 15.0% |
| !! | ATGTCTATAAGATATATAAG+TGG | - | chr7.4:11352692-11352711 | MS.gene018601:intron | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr7.4:11352483-11352502 | MS.gene018601:intron | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | - | chr7.4:11352693-11352712 | MS.gene018601:intron | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr7.4:11352427-11352446 | MS.gene018601:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr7.4:11353310-11353329 | MS.gene018601:CDS | 20.0% |
| !!! | ACGCATTTATTACTATATTT+TGG | - | chr7.4:11355294-11355313 | MS.gene018601:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr7.4:11353932-11353951 | MS.gene018601:CDS | 20.0% |
| !!! | CTATACATTTTCACATTTTT+TGG | - | chr7.4:11355266-11355285 | MS.gene018601:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr7.4:11353282-11353301 | MS.gene018601:CDS | 20.0% |
| !!! | TTTTGATGAGTTAACTAATT+TGG | - | chr7.4:11353862-11353881 | MS.gene018601:CDS | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr7.4:11353770-11353789 | None:intergenic | 25.0% |
| ! | AAACCAAATTAACAGTCTAA+TGG | + | chr7.4:11355327-11355346 | None:intergenic | 25.0% |
| ! | AAACCATTAGACTGTTAATT+TGG | - | chr7.4:11355321-11355340 | MS.gene018601:CDS | 25.0% |
| ! | AATTCTTGATTGTTATGCAT+TGG | - | chr7.4:11355221-11355240 | MS.gene018601:CDS | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr7.4:11352489-11352508 | MS.gene018601:intron | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr7.4:11353127-11353146 | MS.gene018601:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr7.4:11353153-11353172 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr7.4:11354303-11354322 | None:intergenic | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | chr7.4:11352359-11352378 | MS.gene018601:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr7.4:11354129-11354148 | MS.gene018601:intron | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr7.4:11352318-11352337 | MS.gene018601:intron | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr7.4:11353200-11353219 | MS.gene018601:CDS | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr7.4:11354268-11354287 | None:intergenic | 25.0% |
| ! | TGATGCTTTAACTAAAAAAG+CGG | - | chr7.4:11355154-11355173 | MS.gene018601:CDS | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr7.4:11354303-11354322 | MS.gene018601:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr7.4:11353302-11353321 | MS.gene018601:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr7.4:11353558-11353577 | MS.gene018601:intron | 25.0% |
| !! | TTGGTTTGAATATTATCTTC+TGG | - | chr7.4:11355240-11355259 | MS.gene018601:CDS | 25.0% |
| !! | TTTTCAATTACTGAGTTAAG+TGG | - | chr7.4:11355398-11355417 | MS.gene018601:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr7.4:11354404-11354423 | MS.gene018601:intron | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr7.4:11352479-11352498 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr7.4:11353309-11353328 | MS.gene018601:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr7.4:11352805-11352824 | MS.gene018601:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr7.4:11353936-11353955 | MS.gene018601:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr7.4:11354405-11354424 | MS.gene018601:intron | 25.0% |
| AAACACATATGATCTTTCCA+TGG | + | chr7.4:11353373-11353392 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr7.4:11352535-11352554 | MS.gene018601:intron | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr7.4:11353135-11353154 | MS.gene018601:CDS | 30.0% | |
| AAGAAAGACCAAATCCAATT+AGG | - | chr7.4:11354983-11355002 | MS.gene018601:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr7.4:11353903-11353922 | MS.gene018601:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr7.4:11352838-11352857 | MS.gene018601:intron | 30.0% | |
| ATATTAACTTCATCTGAGAG+TGG | - | chr7.4:11352283-11352302 | MS.gene018601:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr7.4:11353904-11353923 | MS.gene018601:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr7.4:11353597-11353616 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | + | chr7.4:11354476-11354495 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr7.4:11353078-11353097 | MS.gene018601:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr7.4:11352523-11352542 | MS.gene018601:intron | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr7.4:11354308-11354327 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | - | chr7.4:11353239-11353258 | MS.gene018601:CDS | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr7.4:11354306-11354325 | MS.gene018601:intron | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr7.4:11353818-11353837 | MS.gene018601:CDS | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr7.4:11354477-11354496 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr7.4:11353131-11353150 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr7.4:11352624-11352643 | MS.gene018601:intron | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr7.4:11352369-11352388 | MS.gene018601:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr7.4:11354114-11354133 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr7.4:11352534-11352553 | MS.gene018601:intron | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr7.4:11353006-11353025 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr7.4:11354248-11354267 | None:intergenic | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr7.4:11354994-11355013 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr7.4:11352892-11352911 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr7.4:11353517-11353536 | MS.gene018601:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr7.4:11352736-11352755 | None:intergenic | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr7.4:11352657-11352676 | MS.gene018601:intron | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr7.4:11354363-11354382 | MS.gene018601:intron | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr7.4:11352882-11352901 | MS.gene018601:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr7.4:11354820-11354839 | MS.gene018601:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr7.4:11353711-11353730 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr7.4:11353761-11353780 | MS.gene018601:CDS | 30.0% |
| ! | TCAGTTTTCAATTCAATGAG+TGG | + | chr7.4:11355542-11355561 | None:intergenic | 30.0% |
| ! | TGAGGCTTTAACAAATTAAG+CGG | - | chr7.4:11355092-11355111 | MS.gene018601:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr7.4:11354976-11354995 | None:intergenic | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr7.4:11354588-11354607 | MS.gene018601:intron | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr7.4:11354488-11354507 | MS.gene018601:intron | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr7.4:11353214-11353233 | MS.gene018601:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr7.4:11354868-11354887 | MS.gene018601:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr7.4:11354489-11354508 | MS.gene018601:intron | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr7.4:11354585-11354604 | MS.gene018601:intron | 30.0% |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | chr7.4:11353040-11353059 | MS.gene018601:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | chr7.4:11353041-11353060 | MS.gene018601:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr7.4:11354653-11354672 | MS.gene018601:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr7.4:11353773-11353792 | MS.gene018601:CDS | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr7.4:11354143-11354162 | MS.gene018601:intron | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr7.4:11352440-11352459 | MS.gene018601:intron | 35.0% | |
| CATAAATTCCAAGGCAAGAT+AGG | + | chr7.4:11353340-11353359 | None:intergenic | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr7.4:11354144-11354163 | MS.gene018601:intron | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr7.4:11352775-11352794 | MS.gene018601:intron | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr7.4:11354478-11354497 | None:intergenic | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr7.4:11352623-11352642 | MS.gene018601:intron | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | - | chr7.4:11353990-11354009 | MS.gene018601:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr7.4:11352618-11352637 | MS.gene018601:intron | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr7.4:11355074-11355093 | MS.gene018601:CDS | 35.0% | |
| GACAGAAATTCCTTATAGCT+CGG | - | chr7.4:11355049-11355068 | MS.gene018601:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr7.4:11352837-11352856 | MS.gene018601:intron | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr7.4:11352560-11352579 | MS.gene018601:intron | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr7.4:11352918-11352937 | MS.gene018601:CDS | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | chr7.4:11353349-11353368 | None:intergenic | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr7.4:11352601-11352620 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr7.4:11353614-11353633 | MS.gene018601:CDS | 35.0% |
| ! | GAGGCTTTAACAAATTAAGC+GGG | - | chr7.4:11355093-11355112 | MS.gene018601:CDS | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr7.4:11354426-11354445 | MS.gene018601:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr7.4:11354073-11354092 | MS.gene018601:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr7.4:11353220-11353239 | MS.gene018601:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr7.4:11353946-11353965 | MS.gene018601:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr7.4:11353786-11353805 | MS.gene018601:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr7.4:11354922-11354941 | None:intergenic | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr7.4:11354655-11354674 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr7.4:11354003-11354022 | MS.gene018601:CDS | 35.0% |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr7.4:11354595-11354614 | MS.gene018601:intron | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr7.4:11353657-11353676 | MS.gene018601:CDS | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr7.4:11354656-11354675 | MS.gene018601:intron | 35.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr7.4:11354109-11354128 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr7.4:11353467-11353486 | None:intergenic | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr7.4:11355000-11355019 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr7.4:11352294-11352313 | MS.gene018601:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr7.4:11354320-11354339 | MS.gene018601:intron | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr7.4:11354552-11354571 | MS.gene018601:intron | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | chr7.4:11353353-11353372 | MS.gene018601:CDS | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr7.4:11354831-11354850 | MS.gene018601:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr7.4:11354551-11354570 | MS.gene018601:intron | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | chr7.4:11354709-11354728 | MS.gene018601:intron | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr7.4:11354697-11354716 | None:intergenic | 40.0% | |
| GTCAATTCTGATGTAATGCG+CGG | - | chr7.4:11355485-11355504 | MS.gene018601:CDS | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr7.4:11354722-11354741 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr7.4:11354319-11354338 | MS.gene018601:intron | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr7.4:11353721-11353740 | MS.gene018601:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr7.4:11353463-11353482 | MS.gene018601:intron | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | + | chr7.4:11353052-11353071 | None:intergenic | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr7.4:11353722-11353741 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr7.4:11353581-11353600 | MS.gene018601:CDS | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr7.4:11354458-11354477 | MS.gene018601:intron | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | chr7.4:11354719-11354738 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr7.4:11355062-11355081 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr7.4:11354171-11354190 | MS.gene018601:CDS | 40.0% |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr7.4:11354914-11354933 | None:intergenic | 40.0% |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr7.4:11354598-11354617 | MS.gene018601:intron | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr7.4:11354002-11354021 | MS.gene018601:CDS | 40.0% |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr7.4:11352574-11352593 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr7.4:11352844-11352863 | MS.gene018601:intron | 40.0% |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr7.4:11352927-11352946 | MS.gene018601:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr7.4:11352985-11353004 | MS.gene018601:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr7.4:11352586-11352605 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr7.4:11353962-11353981 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr7.4:11354221-11354240 | MS.gene018601:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr7.4:11354573-11354592 | None:intergenic | 45.0% | |
| CTCAAGTAGCACAAATGCTC+TGG | + | chr7.4:11352748-11352767 | None:intergenic | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | chr7.4:11354944-11354963 | MS.gene018601:CDS | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr7.4:11352628-11352647 | MS.gene018601:intron | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr7.4:11352924-11352943 | MS.gene018601:CDS | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | - | chr7.4:11354162-11354181 | MS.gene018601:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr7.4:11354471-11354490 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr7.4:11354553-11354572 | MS.gene018601:intron | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr7.4:11353026-11353045 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr7.4:11354843-11354862 | MS.gene018601:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr7.4:11352637-11352656 | None:intergenic | 45.0% | |
| TTGATATCGTTGCGCTTCAG+TGG | + | chr7.4:11354746-11354765 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr7.4:11354025-11354044 | MS.gene018601:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr7.4:11354008-11354027 | MS.gene018601:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr7.4:11352640-11352659 | MS.gene018601:intron | 45.0% |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr7.4:11353048-11353067 | MS.gene018601:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr7.4:11353729-11353748 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr7.4:11353725-11353744 | MS.gene018601:CDS | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | - | chr7.4:11354508-11354527 | MS.gene018601:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr7.4:11354226-11354245 | None:intergenic | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr7.4:11354943-11354962 | MS.gene018601:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr7.4:11353957-11353976 | MS.gene018601:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | - | chr7.4:11354509-11354528 | MS.gene018601:intron | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr7.4:11353794-11353813 | MS.gene018601:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr7.4:11354795-11354814 | MS.gene018601:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr7.4:11354836-11354855 | MS.gene018601:CDS | 50.0% | |
| TGGGTGATCCTATCTTGCCT+TGG | - | chr7.4:11353329-11353348 | MS.gene018601:CDS | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr7.4:11353793-11353812 | MS.gene018601:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr7.4:11354958-11354977 | None:intergenic | 50.0% |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr7.4:11352850-11352869 | MS.gene018601:intron | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr7.4:11353742-11353761 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr7.4:11354835-11354854 | MS.gene018601:CDS | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr7.4:11354227-11354246 | None:intergenic | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr7.4:11354849-11354868 | MS.gene018601:CDS | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr7.4:11352931-11352950 | MS.gene018601:CDS | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr7.4:11352853-11352872 | MS.gene018601:intron | 55.0% |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr7.4:11354798-11354817 | MS.gene018601:CDS | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr7.4:11352858-11352877 | MS.gene018601:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 11352274 | 11355628 | 11352274 | ID=MS.gene018601 |
| chr7.4 | mRNA | 11352274 | 11355628 | 11352274 | ID=MS.gene018601.t1;Parent=MS.gene018601 |
| chr7.4 | exon | 11354746 | 11355628 | 11354746 | ID=MS.gene018601.t1.exon1;Parent=MS.gene018601.t1 |
| chr7.4 | CDS | 11354746 | 11355628 | 11354746 | ID=cds.MS.gene018601.t1;Parent=MS.gene018601.t1 |
| chr7.4 | exon | 11354156 | 11354311 | 11354156 | ID=MS.gene018601.t1.exon2;Parent=MS.gene018601.t1 |
| chr7.4 | CDS | 11354156 | 11354311 | 11354156 | ID=cds.MS.gene018601.t1;Parent=MS.gene018601.t1 |
| chr7.4 | exon | 11353561 | 11354119 | 11353561 | ID=MS.gene018601.t1.exon3;Parent=MS.gene018601.t1 |
| chr7.4 | CDS | 11353561 | 11354119 | 11353561 | ID=cds.MS.gene018601.t1;Parent=MS.gene018601.t1 |
| chr7.4 | exon | 11352878 | 11353476 | 11352878 | ID=MS.gene018601.t1.exon4;Parent=MS.gene018601.t1 |
| chr7.4 | CDS | 11352878 | 11353476 | 11352878 | ID=cds.MS.gene018601.t1;Parent=MS.gene018601.t1 |
| chr7.4 | exon | 11352274 | 11352293 | 11352274 | ID=MS.gene018601.t1.exon5;Parent=MS.gene018601.t1 |
| chr7.4 | CDS | 11352274 | 11352293 | 11352274 | ID=cds.MS.gene018601.t1;Parent=MS.gene018601.t1 |
| Gene Sequence |
| Protein sequence |
