Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018696.t1 | XP_024632961.1 | 46.8 | 660 | 24 | 3 | 1 | 333 | 1 | 660 | 1.20E-121 | 446.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018696.t1 | Q9M8J3 | 49.0 | 51 | 26 | 0 | 212 | 262 | 392 | 442 | 1.5e-08 | 62.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018696.t1 | G7I8T1 | 92.1 | 216 | 17 | 0 | 1 | 216 | 1 | 216 | 5.2e-95 | 357.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene018696.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018696.t1 | MTR_1g083640 | 90.741 | 216 | 20 | 0 | 1 | 216 | 1 | 216 | 4.75e-145 | 411 |
| MS.gene018696.t1 | MTR_0558s0020 | 84.722 | 216 | 18 | 1 | 1 | 216 | 1 | 201 | 1.54e-131 | 377 |
| MS.gene018696.t1 | MTR_2g014100 | 83.871 | 217 | 26 | 2 | 1 | 216 | 1 | 209 | 7.09e-130 | 371 |
| MS.gene018696.t1 | MTR_3g008240 | 81.019 | 216 | 26 | 1 | 1 | 216 | 1 | 201 | 1.29e-124 | 356 |
| MS.gene018696.t1 | MTR_4g040430 | 81.481 | 216 | 20 | 2 | 1 | 216 | 1 | 196 | 2.57e-124 | 355 |
| MS.gene018696.t1 | MTR_5g071590 | 86.339 | 183 | 22 | 1 | 1 | 183 | 1 | 180 | 2.02e-114 | 330 |
| MS.gene018696.t1 | MTR_8g446020 | 67.593 | 216 | 15 | 2 | 1 | 216 | 1 | 161 | 1.31e-92 | 277 |
| MS.gene018696.t1 | MTR_0337s0040 | 64.815 | 216 | 22 | 2 | 1 | 216 | 1 | 162 | 7.11e-87 | 261 |
| MS.gene018696.t1 | MTR_6g090505 | 83.824 | 136 | 22 | 0 | 81 | 216 | 1 | 136 | 9.10e-79 | 245 |
| MS.gene018696.t1 | MTR_1281s0010 | 94.495 | 109 | 6 | 0 | 35 | 143 | 1 | 109 | 9.68e-71 | 216 |
| MS.gene018696.t1 | MTR_1g055240 | 88.182 | 110 | 13 | 0 | 107 | 216 | 3 | 112 | 4.55e-68 | 211 |
| MS.gene018696.t1 | MTR_0019s0290 | 83.333 | 120 | 17 | 1 | 100 | 216 | 8 | 127 | 7.76e-68 | 210 |
| MS.gene018696.t1 | MTR_8g046060 | 79.167 | 96 | 11 | 2 | 1 | 95 | 91 | 178 | 7.77e-39 | 137 |
| MS.gene018696.t1 | MTR_4g008820 | 76.842 | 95 | 7 | 1 | 1 | 95 | 125 | 204 | 9.64e-37 | 140 |
| MS.gene018696.t1 | MTR_4g133495 | 67.188 | 64 | 18 | 1 | 273 | 333 | 88 | 151 | 3.37e-20 | 89.4 |
| MS.gene018696.t1 | MTR_4g133340 | 67.188 | 64 | 18 | 1 | 273 | 333 | 88 | 151 | 3.37e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018696.t1 | AT3G06250 | 48.077 | 52 | 27 | 0 | 211 | 262 | 391 | 442 | 1.15e-11 | 66.2 |
| MS.gene018696.t1 | AT3G06250 | 48.077 | 52 | 27 | 0 | 211 | 262 | 391 | 442 | 1.15e-11 | 66.2 |
| MS.gene018696.t1 | AT3G06250 | 48.077 | 52 | 27 | 0 | 211 | 262 | 391 | 442 | 1.15e-11 | 66.2 |
Find 45 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 7.1:-10815852 | MS.gene018696:intron |
| AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 7.1:+10815725 | None:intergenic |
| GAGAACGTCTTATGAAGTTT+TGG | 0.251408 | 7.1:-10816661 | MS.gene018696:CDS |
| TCTGTTGTTGGCCTGTTGTT+AGG | 0.292589 | 7.1:+10816927 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 7.1:+10816736 | None:intergenic |
| ATGATTGTCAAAACCAATAA+AGG | 0.357876 | 7.1:+10815839 | None:intergenic |
| CGATCATGATCTTCAAGACT+TGG | 0.399935 | 7.1:+10814964 | None:intergenic |
| GCTCTTATAAATTCTAAAGT+TGG | 0.400120 | 7.1:-10816693 | MS.gene018696:CDS |
| CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 7.1:-10814888 | MS.gene018696:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.427485 | 7.1:-10816975 | MS.gene018696:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 7.1:-10816723 | MS.gene018696:CDS |
| TCCATGATTCTTTATTGCTA+GGG | 0.444266 | 7.1:+10817138 | None:intergenic |
| TTCCATGATTCTTTATTGCT+AGG | 0.445442 | 7.1:+10817137 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7.1:-10816858 | MS.gene018696:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 7.1:-10816806 | MS.gene018696:CDS |
| ACCTGTGGACTGTCTGTTGT+TGG | 0.465317 | 7.1:+10816915 | None:intergenic |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 7.1:-10816938 | MS.gene018696:CDS |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 7.1:-10814951 | MS.gene018696:CDS |
| CTCTTTAAAACATATTGTCC+AGG | 0.491965 | 7.1:+10814813 | None:intergenic |
| CCCCTAGCAATAAAGAATCA+TGG | 0.497001 | 7.1:-10817139 | MS.gene018696:CDS |
| TTACAACCAACCCTTTCCTC+AGG | 0.505082 | 7.1:+10816864 | None:intergenic |
| AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 7.1:-10816841 | MS.gene018696:CDS |
| ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 7.1:-10817009 | MS.gene018696:CDS |
| CTAAGGTAACACGAATGCTC+TGG | 0.517941 | 7.1:+10816753 | None:intergenic |
| GTCAGCATGAATCATTGCTA+GGG | 0.522802 | 7.1:+10817178 | None:intergenic |
| GATCATGATCTTCAAGACTT+GGG | 0.523871 | 7.1:+10814965 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 7.1:-10816964 | MS.gene018696:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 7.1:-10816799 | MS.gene018696:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.534744 | 7.1:+10816765 | None:intergenic |
| CCATGATTCTTTATTGCTAG+GGG | 0.537011 | 7.1:+10817139 | None:intergenic |
| TGTCAGCATGAATCATTGCT+AGG | 0.540740 | 7.1:+10817177 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 7.1:-10816963 | MS.gene018696:CDS |
| ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 7.1:-10814887 | MS.gene018696:CDS |
| ATCATGATCTTCAAGACTTG+GGG | 0.583938 | 7.1:+10814966 | None:intergenic |
| AACACAATAACACACTAGCC+TGG | 0.584442 | 7.1:+10815694 | None:intergenic |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 7.1:-10816805 | MS.gene018696:CDS |
| AGTTCTTAGAAGATAATACC+TGG | 0.602513 | 7.1:-10814831 | MS.gene018696:CDS |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 7.1:-10817218 | MS.gene018696:CDS |
| GCCAACAACAGACAGTCCAC+AGG | 0.619933 | 7.1:-10816916 | MS.gene018696:CDS |
| ACATCAACTTCATCTGAGAG+TGG | 0.622661 | 7.1:-10817263 | MS.gene018696:CDS |
| TTCACAAACTCAATAACCTG+TGG | 0.626760 | 7.1:+10816900 | None:intergenic |
| TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 7.1:+10815714 | None:intergenic |
| TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 7.1:-10814886 | MS.gene018696:CDS |
| TCAGCATGAATCATTGCTAG+GGG | 0.681156 | 7.1:+10817179 | None:intergenic |
| ACAGACGATTTATACAGACC+AGG | 0.720235 | 7.1:-10815712 | MS.gene018696:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATGAGTTAAATAATT+TGG | - | chr7.1:10816505-10816524 | MS.gene018696:intron | 15.0% |
| !! | ACATACTTATTAGAATACTT+AGG | - | chr7.1:10816004-10816023 | MS.gene018696:intron | 20.0% |
| !! | ACTGAACAAACAATAAATAT+CGG | - | chr7.1:10815705-10815724 | MS.gene018696:intron | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | - | chr7.1:10815270-10815289 | MS.gene018696:intron | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | + | chr7.1:10815584-10815603 | None:intergenic | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | - | chr7.1:10815271-10815290 | MS.gene018696:intron | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | - | chr7.1:10814984-10815003 | MS.gene018696:CDS | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | - | chr7.1:10816546-10816565 | MS.gene018696:intron | 20.0% |
| !!! | ATAACACTGAATTTTCTATT+AGG | - | chr7.1:10815018-10815037 | MS.gene018696:intron | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | - | chr7.1:10816547-10816566 | MS.gene018696:intron | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | - | chr7.1:10816575-10816594 | MS.gene018696:intron | 20.0% |
| !!! | TTAATTTCATTAAGTTGTTC+TGG | - | chr7.1:10815774-10815793 | MS.gene018696:CDS | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | - | chr7.1:10816067-10816086 | MS.gene018696:intron | 20.0% |
| ! | ACAAAACAAGAAATCTGATA+AGG | - | chr7.1:10815067-10815086 | MS.gene018696:intron | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | + | chr7.1:10815731-10815750 | None:intergenic | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | + | chr7.1:10816240-10816259 | None:intergenic | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | - | chr7.1:10815928-10815947 | MS.gene018696:intron | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | - | chr7.1:10815656-10815675 | MS.gene018696:intron | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr7.1:10816946-10816965 | None:intergenic | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr7.1:10816772-10816791 | MS.gene018696:CDS | 25.0% |
| ! | TCTTACTTATTTGAACTACA+CGG | - | chr7.1:10815850-10815869 | MS.gene018696:intron | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr7.1:10816946-10816965 | MS.gene018696:CDS | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | + | chr7.1:10816993-10817012 | None:intergenic | 25.0% |
| !! | CAAAGTTTTCACAATTGATA+AGG | - | chr7.1:10817006-10817025 | MS.gene018696:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | - | chr7.1:10816195-10816214 | MS.gene018696:intron | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | - | chr7.1:10815875-10815894 | MS.gene018696:intron | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | - | chr7.1:10815874-10815893 | MS.gene018696:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr7.1:10815618-10815637 | MS.gene018696:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | - | chr7.1:10815952-10815971 | MS.gene018696:intron | 25.0% |
| !!! | GACAATATGTTTTAAAGAGT+TGG | - | chr7.1:10817267-10817286 | MS.gene018696:CDS | 25.0% |
| !!! | GCTCTTATAAATTCTAAAGT+TGG | - | chr7.1:10815383-10815402 | MS.gene018696:intron | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | - | chr7.1:10816579-10816598 | MS.gene018696:intron | 25.0% |
| AAAACACCTGGAAAACTATT+CGG | + | chr7.1:10816413-10816432 | None:intergenic | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | + | chr7.1:10815882-10815901 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr7.1:10815113-10815132 | MS.gene018696:intron | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr7.1:10815713-10815732 | MS.gene018696:CDS | 30.0% | |
| AATAAATGCAAAGCAAGAAG+GGG | + | chr7.1:10816909-10816928 | None:intergenic | 30.0% | |
| AGTTCTTAGAAGATAATACC+TGG | - | chr7.1:10817245-10817264 | MS.gene018696:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr7.1:10815101-10815120 | MS.gene018696:intron | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr7.1:10816951-10816970 | None:intergenic | 30.0% | |
| CTTACTTATTTGAACTACAC+GGG | - | chr7.1:10815851-10815870 | MS.gene018696:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr7.1:10816949-10816968 | MS.gene018696:CDS | 30.0% | |
| GAATAAATGCAAAGCAAGAA+GGG | + | chr7.1:10816910-10816929 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | - | chr7.1:10816461-10816480 | MS.gene018696:intron | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | - | chr7.1:10815138-10815157 | MS.gene018696:intron | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | - | chr7.1:10816224-10816243 | MS.gene018696:intron | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr7.1:10815112-10815131 | MS.gene018696:intron | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | - | chr7.1:10815277-10815296 | MS.gene018696:intron | 30.0% | |
| TAAGTTTGTCTCAAACCAAA+TGG | + | chr7.1:10815916-10815935 | None:intergenic | 30.0% | |
| TCCATGATTCTTTATTGCTA+GGG | + | chr7.1:10814941-10814960 | None:intergenic | 30.0% | |
| TGAATAAATGCAAAGCAAGA+AGG | + | chr7.1:10816911-10816930 | None:intergenic | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | + | chr7.1:10815343-10815362 | None:intergenic | 30.0% | |
| TTCCATGATTCTTTATTGCT+AGG | + | chr7.1:10814942-10814961 | None:intergenic | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | + | chr7.1:10815470-10815489 | None:intergenic | 30.0% | |
| ! | AGAACGTCTTATGAAGTTTT+GGG | - | chr7.1:10815416-10815435 | MS.gene018696:CDS | 30.0% |
| ! | TATGATGATGCTGATAATGA+CGG | - | chr7.1:10817040-10817059 | MS.gene018696:CDS | 30.0% |
| ! | TATTTCAATGCTTTTCTTCG+TGG | - | chr7.1:10816716-10816735 | MS.gene018696:CDS | 30.0% |
| !! | ATCATGATCGATTTGATGAA+AGG | - | chr7.1:10817125-10817144 | MS.gene018696:CDS | 30.0% |
| !! | CTCTTTAAAACATATTGTCC+AGG | + | chr7.1:10817266-10817285 | None:intergenic | 30.0% |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | - | chr7.1:10815737-10815756 | MS.gene018696:CDS | 30.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | + | chr7.1:10816354-10816373 | None:intergenic | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | - | chr7.1:10815505-10815524 | MS.gene018696:intron | 35.0% | |
| ACATTATGGTTCAGAGAATG+AGG | - | chr7.1:10816786-10816805 | MS.gene018696:CDS | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | + | chr7.1:10815574-10815593 | None:intergenic | 35.0% | |
| ATCATGATCTTCAAGACTTG+GGG | + | chr7.1:10817113-10817132 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+GGG | - | chr7.1:10817189-10817208 | MS.gene018696:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr7.1:10816787-10816806 | MS.gene018696:CDS | 35.0% | |
| CCATGATTCTTTATTGCTAG+GGG | + | chr7.1:10814940-10814959 | None:intergenic | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr7.1:10815353-10815372 | MS.gene018696:intron | 35.0% | |
| CTTGCTTTGCATTTATTCAC+AGG | - | chr7.1:10816912-10816931 | MS.gene018696:CDS | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | - | chr7.1:10815202-10815221 | MS.gene018696:intron | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | - | chr7.1:10815196-10815215 | MS.gene018696:intron | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | - | chr7.1:10815502-10815521 | MS.gene018696:intron | 35.0% | |
| GATCATGATCTTCAAGACTT+GGG | + | chr7.1:10817114-10817133 | None:intergenic | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | + | chr7.1:10815573-10815592 | None:intergenic | 35.0% | |
| TAAAGAATCGAACAAGTGAG+TGG | + | chr7.1:10816757-10816776 | None:intergenic | 35.0% | |
| TAAGACCTATAGTCAATCCT+AGG | + | chr7.1:10815835-10815854 | None:intergenic | 35.0% | |
| TCCAAAACATCAACATTCGA+AGG | + | chr7.1:10817067-10817086 | None:intergenic | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | - | chr7.1:10815201-10815220 | MS.gene018696:intron | 35.0% | |
| TTCACAAACTCAATAACCTG+TGG | + | chr7.1:10815179-10815198 | None:intergenic | 35.0% | |
| ! | AGACAGCAGATACTTTTGAT+TGG | - | chr7.1:10816300-10816319 | MS.gene018696:intron | 35.0% |
| ! | AGCTGGAATATATTTGAAGC+TGG | - | chr7.1:10815235-10815254 | MS.gene018696:intron | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | - | chr7.1:10816416-10816435 | MS.gene018696:intron | 35.0% |
| ! | ATGATGATGCTGATAATGAC+GGG | - | chr7.1:10817041-10817060 | MS.gene018696:CDS | 35.0% |
| ! | ATTTAGTTTACGCATTGCTG+AGG | - | chr7.1:10816038-10816057 | MS.gene018696:intron | 35.0% |
| ! | ATTTTCTCGCTTCTACCATT+TGG | - | chr7.1:10815898-10815917 | MS.gene018696:intron | 35.0% |
| ! | GAATGCTCTGGTTTATGTAA+TGG | + | chr7.1:10815314-10815333 | None:intergenic | 35.0% |
| ! | GAGAACGTCTTATGAAGTTT+TGG | - | chr7.1:10815415-10815434 | MS.gene018696:CDS | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | - | chr7.1:10816417-10816436 | MS.gene018696:intron | 35.0% |
| ! | TCAATTCCGAATAGTTTTCC+AGG | - | chr7.1:10816404-10816423 | MS.gene018696:intron | 35.0% |
| !!! | CATCGAAAGAGTGTTTTGTT+TGG | - | chr7.1:10816257-10816276 | MS.gene018696:intron | 35.0% |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | - | chr7.1:10815626-10815645 | MS.gene018696:intron | 35.0% |
| !!! | TCGACATGTTTTGAAGATCT+TGG | - | chr7.1:10817222-10817241 | MS.gene018696:CDS | 35.0% |
| !!! | TCTTATGAAGTTTTGGGTCA+GGG | - | chr7.1:10815422-10815441 | MS.gene018696:intron | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | - | chr7.1:10816429-10816448 | MS.gene018696:intron | 35.0% |
| AACACAATAACACACTAGCC+TGG | + | chr7.1:10816385-10816404 | None:intergenic | 40.0% | |
| AACTGCCTAGGATTGACTAT+AGG | - | chr7.1:10815827-10815846 | MS.gene018696:CDS | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | - | chr7.1:10816364-10816383 | MS.gene018696:intron | 40.0% | |
| ACATCAACTTCATCTGAGAG+TGG | - | chr7.1:10814813-10814832 | MS.gene018696:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr7.1:10816963-10816982 | MS.gene018696:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+AGG | - | chr7.1:10817188-10817207 | MS.gene018696:CDS | 40.0% | |
| CCCCTAGCAATAAAGAATCA+TGG | - | chr7.1:10814937-10814956 | MS.gene018696:CDS | 40.0% | |
| CGATCATGATCTTCAAGACT+TGG | + | chr7.1:10817115-10817134 | None:intergenic | 40.0% | |
| CTTACGCAAATCGTATGCAT+TGG | - | chr7.1:10816633-10816652 | MS.gene018696:intron | 40.0% | |
| GCATACGATTTGCGTAAGTT+TGG | + | chr7.1:10816631-10816650 | None:intergenic | 40.0% | |
| GTCAGCATGAATCATTGCTA+GGG | + | chr7.1:10814901-10814920 | None:intergenic | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | - | chr7.1:10816962-10816981 | MS.gene018696:CDS | 40.0% | |
| TCACACAAGACAAAATGCCT+AGG | + | chr7.1:10815972-10815991 | None:intergenic | 40.0% | |
| TCAGCATGAATCATTGCTAG+GGG | + | chr7.1:10814900-10814919 | None:intergenic | 40.0% | |
| TGGTCTGTATAAATCGTCTG+TGG | + | chr7.1:10816365-10816384 | None:intergenic | 40.0% | |
| TGTCAGCATGAATCATTGCT+AGG | + | chr7.1:10814902-10814921 | None:intergenic | 40.0% | |
| TGTCGTATGTTTGAGAACAG+GGG | - | chr7.1:10817190-10817209 | MS.gene018696:CDS | 40.0% | |
| ! | AGGGGTGTACTTGTTTACAA+CGG | + | chr7.1:10816891-10816910 | None:intergenic | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | - | chr7.1:10815815-10815834 | MS.gene018696:CDS | 40.0% |
| ! | GCACAGAGAATCTTCCTTTT+CGG | - | chr7.1:10815453-10815472 | MS.gene018696:intron | 40.0% |
| ! | GCCTTCGAATGTTGATGTTT+TGG | - | chr7.1:10817063-10817082 | MS.gene018696:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | - | chr7.1:10816668-10816687 | MS.gene018696:CDS | 40.0% |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr7.1:10816814-10816833 | MS.gene018696:CDS | 40.0% |
| !! | TATGCATTGGTCTTCAGCTT+GGG | - | chr7.1:10816646-10816665 | MS.gene018696:intron | 40.0% |
| !!! | GTCTTATGAAGTTTTGGGTC+AGG | - | chr7.1:10815421-10815440 | MS.gene018696:intron | 40.0% |
| AATCGAACAAGTGAGTGGTC+TGG | + | chr7.1:10816752-10816771 | None:intergenic | 45.0% | |
| AGCCACCTAAAGTATGAGGT+AGG | + | chr7.1:10816605-10816624 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | + | chr7.1:10816425-10816444 | None:intergenic | 45.0% | |
| CTAAGGTAACACGAATGCTC+TGG | + | chr7.1:10815326-10815345 | None:intergenic | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | - | chr7.1:10815206-10815225 | MS.gene018696:intron | 45.0% | |
| GAAGGCCTACCTCATACTTT+AGG | - | chr7.1:10816597-10816616 | MS.gene018696:intron | 45.0% | |
| GACAAGCCACCTAAAGTATG+AGG | + | chr7.1:10816609-10816628 | None:intergenic | 45.0% | |
| GAGGGATAATCATGCTGAGT+TGG | - | chr7.1:10816805-10816824 | MS.gene018696:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | + | chr7.1:10815215-10815234 | None:intergenic | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | - | chr7.1:10815509-10815528 | MS.gene018696:intron | 45.0% |
| ! | TCTGTTGTTGGCCTGTTGTT+AGG | + | chr7.1:10815152-10815171 | None:intergenic | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr7.1:10815218-10815237 | MS.gene018696:intron | 45.0% |
| !! | GTATGCATTGGTCTTCAGCT+TGG | - | chr7.1:10816645-10816664 | MS.gene018696:intron | 45.0% |
| !! | TCACTGATTCATGCTGAGAG+TGG | - | chr7.1:10814858-10814877 | MS.gene018696:CDS | 45.0% |
| ATCCCAACAGTCAGCTGATG+CGG | - | chr7.1:10816864-10816883 | MS.gene018696:CDS | 50.0% | |
| GGCCTACCTCATACTTTAGG+TGG | - | chr7.1:10816600-10816619 | MS.gene018696:intron | 50.0% | |
| ! | ACCTGTGGACTGTCTGTTGT+TGG | + | chr7.1:10815164-10815183 | None:intergenic | 50.0% |
| !! | GTTTTGGGTCAGGGAGTTTG+AGG | - | chr7.1:10815431-10815450 | MS.gene018696:intron | 50.0% |
| !! | TGGGCTTTGTTCATGGCACA+TGG | - | chr7.1:10816436-10816455 | MS.gene018696:intron | 50.0% |
| GACCGCATCAGCTGACTGTT+GGG | + | chr7.1:10816869-10816888 | None:intergenic | 55.0% | |
| GCCAACAACAGACAGTCCAC+AGG | - | chr7.1:10815160-10815179 | MS.gene018696:intron | 55.0% | |
| GGACCGCATCAGCTGACTGT+TGG | + | chr7.1:10816870-10816889 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 10814804 | 10817294 | 10814804 | ID=MS.gene018696 |
| chr7.1 | mRNA | 10814804 | 10817294 | 10814804 | ID=MS.gene018696.t1;Parent=MS.gene018696 |
| chr7.1 | exon | 10816661 | 10817294 | 10816661 | ID=MS.gene018696.t1.exon1;Parent=MS.gene018696.t1 |
| chr7.1 | CDS | 10816661 | 10817294 | 10816661 | ID=cds.MS.gene018696.t1;Parent=MS.gene018696.t1 |
| chr7.1 | exon | 10815709 | 10815864 | 10815709 | ID=MS.gene018696.t1.exon2;Parent=MS.gene018696.t1 |
| chr7.1 | CDS | 10815709 | 10815864 | 10815709 | ID=cds.MS.gene018696.t1;Parent=MS.gene018696.t1 |
| chr7.1 | exon | 10815388 | 10815435 | 10815388 | ID=MS.gene018696.t1.exon3;Parent=MS.gene018696.t1 |
| chr7.1 | CDS | 10815388 | 10815435 | 10815388 | ID=cds.MS.gene018696.t1;Parent=MS.gene018696.t1 |
| chr7.1 | exon | 10814804 | 10815006 | 10814804 | ID=MS.gene018696.t1.exon4;Parent=MS.gene018696.t1 |
| chr7.1 | CDS | 10814804 | 10815006 | 10814804 | ID=cds.MS.gene018696.t1;Parent=MS.gene018696.t1 |
| Gene Sequence |
| Protein sequence |
