AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018725

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018725.t1 MTR_7g096610 95.982 224 8 1 1 223 1 224 4.04e-164 452
MS.gene018725.t1 MTR_1g070205 71.875 192 42 6 8 194 12 196 4.65e-92 270
MS.gene018725.t1 MTR_7g096530 74.528 106 27 0 3 108 9 114 1.37e-55 176
MS.gene018725.t1 MTR_5g080470 55.782 147 61 2 2 145 1 146 2.12e-52 167
MS.gene018725.t1 MTR_8g036085 71.845 103 29 0 8 110 23 125 3.10e-51 166
MS.gene018725.t1 MTR_1g070220 71.154 104 30 0 5 108 12 115 1.45e-49 161
MS.gene018725.t1 MTR_7g074990 71.287 101 29 0 8 108 20 120 2.81e-49 161
MS.gene018725.t1 MTR_8g036105 66.667 105 35 0 6 110 16 120 1.10e-48 159
MS.gene018725.t1 MTR_6g027710 63.889 108 39 0 7 114 39 146 8.47e-47 154
MS.gene018725.t1 MTR_7g075230 64.706 119 37 4 6 122 10 125 1.58e-45 150
MS.gene018725.t1 MTR_5g083230 46.250 160 71 5 4 162 2 147 2.01e-36 126
MS.gene018725.t1 MTR_3g071590 44.218 147 79 2 1 147 1 144 3.63e-36 125
MS.gene018725.t1 MTR_6g027700 56.436 101 44 0 8 108 7 107 2.61e-35 124
MS.gene018725.t1 MTR_4g083680 52.830 106 49 1 4 109 11 115 9.21e-34 119
MS.gene018725.t1 MTR_7g033800 56.122 98 42 1 5 102 8 104 3.45e-33 118
MS.gene018725.t1 MTR_5g083010 51.376 109 51 2 5 113 8 114 4.09e-33 118
MS.gene018725.t1 MTR_3g452660 51.754 114 54 1 2 115 1 113 4.55e-33 120
MS.gene018725.t1 MTR_3g031660 43.871 155 80 6 4 157 2 150 6.03e-33 117
MS.gene018725.t1 MTR_2g068760 55.000 100 44 1 4 103 9 107 8.55e-33 116
MS.gene018725.t1 MTR_4g105170 57.292 96 40 1 7 102 10 104 1.42e-32 117
MS.gene018725.t1 MTR_5g083960 52.427 103 46 2 7 108 38 138 5.84e-32 115
MS.gene018725.t1 MTR_3g077240 56.250 96 41 1 7 102 9 103 7.57e-32 115
MS.gene018725.t1 MTR_5g017950 52.727 110 51 1 1 110 1 109 1.34e-31 117
MS.gene018725.t1 MTR_3g071420 50.485 103 50 1 5 107 11 112 2.28e-31 113
MS.gene018725.t1 MTR_3g094690 54.455 101 43 2 7 106 46 144 3.44e-31 114
MS.gene018725.t1 MTR_6g005070 53.061 98 45 1 5 102 6 102 6.15e-31 111
MS.gene018725.t1 MTR_3g073690 49.091 110 55 1 1 110 2 110 7.51e-31 112
MS.gene018725.t1 MTR_2g093310 51.456 103 47 2 7 109 32 131 7.84e-30 110
MS.gene018725.t1 MTR_3g094690 54.455 101 42 3 7 106 46 143 2.08e-29 110
MS.gene018725.t1 MTR_6g005080 50.485 103 49 2 1 102 2 103 4.08e-29 106
MS.gene018725.t1 MTR_4g060950 52.885 104 45 3 7 109 23 123 2.15e-27 103
MS.gene018725.t1 MTR_1g095850 51.579 95 45 1 9 103 73 166 2.00e-26 102
MS.gene018725.t1 MTR_5g075020 54.369 103 44 2 7 108 42 142 4.80e-26 101
MS.gene018725.t1 MTR_5g075020 54.369 103 44 2 7 108 46 146 1.06e-25 100
MS.gene018725.t1 MTR_8g040900 55.172 87 38 1 2 88 1 86 3.17e-25 99.0
MS.gene018725.t1 MTR_5g093010 41.732 127 67 3 9 135 6 125 6.38e-25 95.9
MS.gene018725.t1 MTR_7g028905 44.231 104 57 1 7 110 4 106 1.45e-24 94.0
MS.gene018725.t1 MTR_8g079660 38.462 104 63 1 8 111 8 110 3.62e-19 83.6
MS.gene018725.t1 MTR_8g079620 41.346 104 60 1 8 111 8 110 6.70e-19 82.4
MS.gene018725.t1 MTR_8g017090 37.255 102 63 1 9 110 13 113 6.66e-18 80.9
MS.gene018725.t1 MTR_4g107450 37.143 105 65 1 4 108 6 109 1.79e-17 79.7
MS.gene018725.t1 MTR_2g100020 33.645 107 70 1 4 110 15 120 6.61e-17 77.8
MS.gene018725.t1 MTR_6g011250 38.636 88 52 2 2 88 3 89 2.21e-15 72.0
MS.gene018725.t1 MTR_8g079580 36.275 102 63 2 8 108 8 108 3.95e-15 72.0
MS.gene018725.t1 MTR_6g011200 42.353 85 45 3 9 90 10 93 4.58e-15 72.4
MS.gene018725.t1 MTR_6g011230 35.714 98 62 1 9 106 12 108 1.24e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018725.t1 AT3G58190 82.203 118 19 1 8 123 11 128 4.84e-71 216
MS.gene018725.t1 AT2G42440 74.809 131 31 1 2 130 1 131 4.79e-69 212
MS.gene018725.t1 AT2G31310 61.268 142 54 1 2 143 1 141 2.08e-59 185
MS.gene018725.t1 AT2G42430 73.832 107 28 0 4 110 11 117 2.68e-54 174
MS.gene018725.t1 AT4G00210 58.333 132 54 1 3 133 6 137 1.51e-51 166
MS.gene018725.t1 AT3G03760 71.569 102 29 0 7 108 50 151 4.92e-50 164
MS.gene018725.t1 AT5G06080 68.224 107 34 0 2 108 1 107 7.73e-50 160
MS.gene018725.t1 AT2G45420 74.000 100 26 0 11 110 40 139 2.28e-49 162
MS.gene018725.t1 AT4G00220 70.000 100 30 0 11 110 20 119 1.64e-46 154
MS.gene018725.t1 AT2G45410 64.286 98 35 0 11 108 19 116 4.99e-42 141
MS.gene018725.t1 AT3G27650 57.292 96 40 1 7 102 38 132 5.57e-33 117
MS.gene018725.t1 AT5G63090 40.642 187 88 6 7 193 10 173 1.83e-32 116
MS.gene018725.t1 AT5G63090 40.642 187 88 6 7 193 10 173 1.83e-32 116
MS.gene018725.t1 AT5G63090 40.642 187 88 6 7 193 10 173 1.83e-32 116
MS.gene018725.t1 AT5G63090 40.642 187 88 6 7 193 10 173 1.83e-32 116
MS.gene018725.t1 AT2G30130 51.695 118 53 3 2 118 1 115 1.85e-32 117
MS.gene018725.t1 AT1G07900 53.608 97 44 1 7 103 32 127 9.84e-31 112
MS.gene018725.t1 AT1G31320 53.261 92 42 1 4 95 9 99 1.28e-30 111
MS.gene018725.t1 AT1G16530 48.305 118 58 3 7 122 13 129 2.21e-30 110
MS.gene018725.t1 AT3G11090 49.038 104 52 1 5 108 8 110 3.70e-30 110
MS.gene018725.t1 AT2G28500 53.608 97 44 1 7 103 54 149 6.51e-30 111
MS.gene018725.t1 AT5G66870 52.294 109 51 1 2 110 1 108 7.33e-30 113
MS.gene018725.t1 AT2G30340 50.485 103 48 2 7 108 51 151 1.56e-28 108
MS.gene018725.t1 AT2G30340 50.485 103 48 2 7 108 52 152 1.77e-28 108
MS.gene018725.t1 AT2G23660 50.000 102 50 1 7 108 4 104 3.12e-27 106
MS.gene018725.t1 AT2G23660 50.000 102 50 1 7 108 4 104 3.12e-27 106
MS.gene018725.t1 AT2G23660 50.000 102 50 1 7 108 4 104 3.12e-27 106
MS.gene018725.t1 AT3G26660 44.118 102 56 1 9 110 6 106 4.21e-26 98.2
MS.gene018725.t1 AT1G65620 56.977 86 36 1 3 88 4 88 6.90e-26 100
MS.gene018725.t1 AT1G65620 56.977 86 36 1 3 88 4 88 6.90e-26 100
MS.gene018725.t1 AT1G65620 56.977 86 36 1 3 88 4 88 6.90e-26 100
MS.gene018725.t1 AT1G65620 56.977 86 36 1 3 88 4 88 6.90e-26 100
MS.gene018725.t1 AT1G65620 56.977 86 36 1 3 88 4 88 6.90e-26 100
MS.gene018725.t1 AT3G26620 44.118 102 56 1 9 110 6 106 7.12e-26 97.8
MS.gene018725.t1 AT2G40470 54.217 83 35 2 7 88 19 99 1.83e-25 99.0
MS.gene018725.t1 AT2G40470 54.217 83 35 2 7 88 44 124 2.36e-25 99.4
MS.gene018725.t1 AT3G50510 43.363 113 63 1 2 114 6 117 2.41e-25 98.6
MS.gene018725.t1 AT3G50510 43.363 113 63 1 2 114 6 117 2.41e-25 98.6
MS.gene018725.t1 AT3G13850 38.235 102 62 1 9 110 37 137 4.58e-18 80.9
MS.gene018725.t1 AT5G35900 39.216 102 61 1 9 110 6 106 3.25e-16 74.7
MS.gene018725.t1 AT1G72980 35.238 105 67 1 4 108 9 112 8.00e-16 73.6
MS.gene018725.t1 AT3G47870 32.381 105 70 1 4 108 32 135 2.49e-14 71.2
MS.gene018725.t1 AT1G06280 38.667 75 45 1 9 83 25 98 4.35e-13 66.2

Find 44 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACTTCAAGATCCAATTTA+TGG 0.151814 7.1:+11116310 MS.gene018725:CDS
TTTCCAAAGTTCTTCTCATT+AGG 0.257962 7.1:-11116958 None:intergenic
ATTAGTGGAAGAAGAGAAAT+CGG 0.262535 7.1:-11117058 None:intergenic
CTTTATGAATAGCTGCAAAA+TGG 0.272079 7.1:-11116192 None:intergenic
GCAGCTATTCATAAAGTCTT+TGG 0.277980 7.1:+11116199 MS.gene018725:CDS
TGGGCAACACATCCATAAAT+TGG 0.288880 7.1:-11116322 None:intergenic
TTCCAAAGTTCTTCTCATTA+GGG 0.315481 7.1:-11116957 None:intergenic
TGAGATGCTTTCTTCCAATA+TGG 0.329076 7.1:-11117166 None:intergenic
CTCATGGATCTAAACCCTAT+TGG 0.344271 7.1:+11117123 MS.gene018725:CDS
ATTGGAAACTATGAAAATTC+AGG 0.345302 7.1:+11117141 MS.gene018725:CDS
TGAAAATTCAGGAACCATAT+TGG 0.361597 7.1:+11117152 MS.gene018725:CDS
GGCCATATGATGACTGGTTC+TGG 0.361805 7.1:+11116079 None:intergenic
TTTCCTCCTCAAGAATTTGC+AGG 0.390616 7.1:-11116116 None:intergenic
TTGAGGAGGAAATGTGTTAG+AGG 0.402110 7.1:+11116127 MS.gene018725:CDS
TCTTGAGGGAGAATATTAGT+AGG 0.429657 7.1:-11116982 None:intergenic
AACCCTAATGAGAAGAACTT+TGG 0.435631 7.1:+11116955 MS.gene018725:CDS
AATGGGTAGCACCTTGTTCA+TGG 0.448967 7.1:-11116174 None:intergenic
TTTATGAATAGCTGCAAAAT+GGG 0.456521 7.1:-11116191 None:intergenic
TGTTGTTGATGAGAGATTAG+TGG 0.463491 7.1:-11117073 None:intergenic
TCCCTCAAGATCTTCAAAGT+TGG 0.463884 7.1:+11116995 MS.gene018725:CDS
CAACAACACAATATTACAAT+GGG 0.480559 7.1:+11117088 MS.gene018725:CDS
CAAATTAGCCACTTACTGAT+AGG 0.482945 7.1:-11117256 None:intergenic
GAGATGAACAAACCTGTTGT+TGG 0.485474 7.1:-11116357 None:intergenic
TCTTAAGGCCATATGATGAC+TGG 0.517552 7.1:+11116073 None:intergenic
ACTGGTTCTGGTTCTCCTTG+TGG 0.523532 7.1:+11116091 MS.gene018725:CDS
TCTTCAAAGTTGGTTCCAGA+TGG 0.523638 7.1:+11117005 MS.gene018725:CDS
CTGTCTTTGCATGTTGTCAA+AGG 0.524030 7.1:-11117229 None:intergenic
CCTTGTTCATGGCAAAAGTA+AGG 0.524451 7.1:-11116163 None:intergenic
AACCAACTTTGAAGATCTTG+AGG 0.528680 7.1:-11116997 None:intergenic
GCTTCACAACGATCAGTCAC+AGG 0.531664 7.1:-11116256 None:intergenic
TGGGACTACTAACACTCTCA+TGG 0.531675 7.1:+11117107 MS.gene018725:CDS
TTAGTGGAAGAAGAGAAATC+GGG 0.531706 7.1:-11117057 None:intergenic
ACCAACTTTGAAGATCTTGA+GGG 0.534056 7.1:-11116996 None:intergenic
CAGTCACAGGGAGGTGTGCA+AGG 0.550402 7.1:-11116243 None:intergenic
ATTATTACATCGCTCATCAA+AGG 0.565424 7.1:-11117199 None:intergenic
TCAACAACACAATATTACAA+TGG 0.569747 7.1:+11117087 MS.gene018725:CDS
TGAAGGAACAAGCAGCTCAA+AGG 0.577683 7.1:+11116908 MS.gene018725:CDS
GTGGTGCCTGCAAATTCTTG+AGG 0.588164 7.1:+11116110 MS.gene018725:CDS
AAGAATTTGCAGGCACCACA+AGG 0.602448 7.1:-11116106 None:intergenic
AAGAAATTGAGAACACATGT+CGG 0.635841 7.1:-11117034 None:intergenic
CTTCACAACGATCAGTCACA+GGG 0.652040 7.1:-11116255 None:intergenic
TTGACAACATGCAAAGACAG+TGG 0.686531 7.1:+11117232 MS.gene018725:CDS
GTGCCTGCAAATTCTTGAGG+AGG 0.696642 7.1:+11116113 MS.gene018725:CDS
CACAACGATCAGTCACAGGG+AGG 0.754403 7.1:-11116252 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTAACAAGAGTATAA+AGG + chr7.1:11116460-11116479 MS.gene018725:intron 15.0%
!!! GATCTTTTTTATATATAAAC+TGG - chr7.1:11116491-11116510 None:intergenic 15.0%
!!! TCTTATAGATATTGATTTTT+TGG - chr7.1:11116523-11116542 None:intergenic 15.0%
!!! TTAATTAACAAGAGTATAAA+GGG + chr7.1:11116461-11116480 MS.gene018725:intron 15.0%
!! TATATTTGACAAAATCATGA+TGG + chr7.1:11116620-11116639 MS.gene018725:intron 20.0%
!!! AATTTTCATAGTTTCCAATA+GGG - chr7.1:11117140-11117159 None:intergenic 20.0%
!!! TTGAGATGCTAATAAAATTT+TGG + chr7.1:11116760-11116779 MS.gene018725:intron 20.0%
! ATTGGAAACTATGAAAATTC+AGG + chr7.1:11117141-11117160 MS.gene018725:CDS 25.0%
! CAACAACACAATATTACAAT+GGG + chr7.1:11117088-11117107 MS.gene018725:CDS 25.0%
! TCAACAACACAATATTACAA+TGG + chr7.1:11117087-11117106 MS.gene018725:CDS 25.0%
! TTTATGAATAGCTGCAAAAT+GGG - chr7.1:11116194-11116213 None:intergenic 25.0%
!! GAATTTTCATAGTTTCCAAT+AGG - chr7.1:11117141-11117160 None:intergenic 25.0%
!!! TTTTTTTTCCTGATCTTTGT+AGG + chr7.1:11116855-11116874 MS.gene018725:intron 25.0%
AAGAAATTGAGAACACATGT+CGG - chr7.1:11117037-11117056 None:intergenic 30.0%
AGACTTCAAGATCCAATTTA+TGG + chr7.1:11116310-11116329 MS.gene018725:CDS 30.0%
ATTAGTGGAAGAAGAGAAAT+CGG - chr7.1:11117061-11117080 None:intergenic 30.0%
ATTATTACATCGCTCATCAA+AGG - chr7.1:11117202-11117221 None:intergenic 30.0%
CTTTATGAATAGCTGCAAAA+TGG - chr7.1:11116195-11116214 None:intergenic 30.0%
GTTCGAATTTCACAGAATAA+GGG - chr7.1:11116705-11116724 None:intergenic 30.0%
TGAAAATTCAGGAACCATAT+TGG + chr7.1:11117152-11117171 MS.gene018725:CDS 30.0%
TGTTCGAATTTCACAGAATA+AGG - chr7.1:11116706-11116725 None:intergenic 30.0%
TTCCAAAGTTCTTCTCATTA+GGG - chr7.1:11116960-11116979 None:intergenic 30.0%
TTGTTGGAGTGCAAAAATAT+GGG - chr7.1:11116344-11116363 None:intergenic 30.0%
TTTCCAAAGTTCTTCTCATT+AGG - chr7.1:11116961-11116980 None:intergenic 30.0%
! ATTAGGGTTTTCAGAATTTG+GGG - chr7.1:11116944-11116963 None:intergenic 30.0%
! CATTAGGGTTTTCAGAATTT+GGG - chr7.1:11116945-11116964 None:intergenic 30.0%
! TCATTAGGGTTTTCAGAATT+TGG - chr7.1:11116946-11116965 None:intergenic 30.0%
! TTTTTGCCAAAATCAAAGTG+TGG + chr7.1:11116675-11116694 MS.gene018725:intron 30.0%
!! TATGTCAGGTTGATTGTATT+AGG - chr7.1:11116552-11116571 None:intergenic 30.0%
!!! ATTGATTTTTTGGTCGTTGT+AGG - chr7.1:11116513-11116532 None:intergenic 30.0%
AACCCTAATGAGAAGAACTT+TGG + chr7.1:11116955-11116974 MS.gene018725:CDS 35.0%
AATGTAAGCGTATACCATCT+AGG - chr7.1:11116404-11116423 None:intergenic 35.0%
ATGTAAGCGTATACCATCTA+GGG - chr7.1:11116403-11116422 None:intergenic 35.0%
CTTAAACTGAAAACCCTAGA+TGG + chr7.1:11116387-11116406 MS.gene018725:intron 35.0%
GCAGCTATTCATAAAGTCTT+TGG + chr7.1:11116199-11116218 MS.gene018725:CDS 35.0%
GTTGTTGGAGTGCAAAAATA+TGG - chr7.1:11116345-11116364 None:intergenic 35.0%
TCTTGAGGGAGAATATTAGT+AGG - chr7.1:11116985-11117004 None:intergenic 35.0%
TGAGATGCTTTCTTCCAATA+TGG - chr7.1:11117169-11117188 None:intergenic 35.0%
TGTAAGACTTGGCACATATT+TGG + chr7.1:11116587-11116606 MS.gene018725:intron 35.0%
TTAGTGGAAGAAGAGAAATC+GGG - chr7.1:11117060-11117079 None:intergenic 35.0%
TTGGTGTATTATTGATGCAC+TGG + chr7.1:11116736-11116755 MS.gene018725:intron 35.0%
! AACCAACTTTGAAGATCTTG+AGG - chr7.1:11117000-11117019 None:intergenic 35.0%
! ACCAACTTTGAAGATCTTGA+GGG - chr7.1:11116999-11117018 None:intergenic 35.0%
! ATTCGAACAGTTGATACAGT+TGG + chr7.1:11116717-11116736 MS.gene018725:intron 35.0%
! TGTTGTTGATGAGAGATTAG+TGG - chr7.1:11117076-11117095 None:intergenic 35.0%
! TTTTTCCTGATCTTTGTAGG+TGG + chr7.1:11116858-11116877 MS.gene018725:intron 35.0%
!! TATTTTTGCACTCCAACAAC+AGG + chr7.1:11116345-11116364 MS.gene018725:CDS 35.0%
ACAAAATCATGATGGCATCG+AGG + chr7.1:11116628-11116647 MS.gene018725:intron 40.0%
ATCGACATGGTGTTTATGTC+AGG - chr7.1:11116566-11116585 None:intergenic 40.0%
ATTGACCACCTACAAAGATC+AGG - chr7.1:11116866-11116885 None:intergenic 40.0%
CCTTGTTCATGGCAAAAGTA+AGG - chr7.1:11116166-11116185 None:intergenic 40.0%
CTCATGGATCTAAACCCTAT+TGG + chr7.1:11117123-11117142 MS.gene018725:CDS 40.0%
CTGTCTTTGCATGTTGTCAA+AGG - chr7.1:11117232-11117251 None:intergenic 40.0%
GAGATGAACAAACCTGTTGT+TGG - chr7.1:11116360-11116379 None:intergenic 40.0%
TCCCTCAAGATCTTCAAAGT+TGG + chr7.1:11116995-11117014 MS.gene018725:CDS 40.0%
TGGGCAACACATCCATAAAT+TGG - chr7.1:11116325-11116344 None:intergenic 40.0%
TTGACAACATGCAAAGACAG+TGG + chr7.1:11117232-11117251 MS.gene018725:CDS 40.0%
TTGAGGAGGAAATGTGTTAG+AGG + chr7.1:11116127-11116146 MS.gene018725:CDS 40.0%
TTTCCTCCTCAAGAATTTGC+AGG - chr7.1:11116119-11116138 None:intergenic 40.0%
! ACATGTCGGAATTTTCCATC+TGG - chr7.1:11117023-11117042 None:intergenic 40.0%
! TCTTCAAAGTTGGTTCCAGA+TGG + chr7.1:11117005-11117024 MS.gene018725:CDS 40.0%
!! CCTTACTTTTGCCATGAACA+AGG + chr7.1:11116163-11116182 MS.gene018725:CDS 40.0%
!! GGTTTGCCACACTTTGATTT+TGG - chr7.1:11116684-11116703 None:intergenic 40.0%
AAGAATTTGCAGGCACCACA+AGG - chr7.1:11116109-11116128 None:intergenic 45.0%
AATGGGTAGCACCTTGTTCA+TGG - chr7.1:11116177-11116196 None:intergenic 45.0%
CCAAGTCTTACAGATCGACA+TGG - chr7.1:11116579-11116598 None:intergenic 45.0%
CCATGTCGATCTGTAAGACT+TGG + chr7.1:11116576-11116595 MS.gene018725:intron 45.0%
CTTCACAACGATCAGTCACA+GGG - chr7.1:11116258-11116277 None:intergenic 45.0%
TGAAGGAACAAGCAGCTCAA+AGG + chr7.1:11116908-11116927 MS.gene018725:CDS 45.0%
TGGGACTACTAACACTCTCA+TGG + chr7.1:11117107-11117126 MS.gene018725:CDS 45.0%
!! AGCACAGCTTGCTTTTCTGA+AGG + chr7.1:11116891-11116910 MS.gene018725:CDS 45.0%
GCTTCACAACGATCAGTCAC+AGG - chr7.1:11116259-11116278 None:intergenic 50.0%
GTGCCTGCAAATTCTTGAGG+AGG + chr7.1:11116113-11116132 MS.gene018725:CDS 50.0%
GTGGTGCCTGCAAATTCTTG+AGG + chr7.1:11116110-11116129 MS.gene018725:CDS 50.0%
!! ACTGGTTCTGGTTCTCCTTG+TGG + chr7.1:11116091-11116110 MS.gene018725:CDS 50.0%
CACAACGATCAGTCACAGGG+AGG - chr7.1:11116255-11116274 None:intergenic 55.0%
! CAGTCACAGGGAGGTGTGCA+AGG - chr7.1:11116246-11116265 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 11116085 11117266 11116085 ID=MS.gene018725
chr7.1 mRNA 11116085 11117266 11116085 ID=MS.gene018725.t1;Parent=MS.gene018725
chr7.1 exon 11116085 11116366 11116085 ID=MS.gene018725.t1.exon1;Parent=MS.gene018725.t1
chr7.1 CDS 11116085 11116366 11116085 ID=cds.MS.gene018725.t1;Parent=MS.gene018725.t1
chr7.1 exon 11116877 11117266 11116877 ID=MS.gene018725.t1.exon2;Parent=MS.gene018725.t1
chr7.1 CDS 11116877 11117266 11116877 ID=cds.MS.gene018725.t1;Parent=MS.gene018725.t1
Gene Sequence

>MS.gene018725

ATGATGACTGGTTCTGGTTCTCCTTGTGGTGCCTGCAAATTCTTGAGGAGGAAATGTGTTAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACCCATTTTGCAGCTATTCATAAAGTCTTTGGTGCAAGTAATGTTTCAAAGCTCCTTGCACACCTCCCTGTGACTGATCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGATGTGTTGCCCATATTTTTGCACTCCAACAACAGGTTTGTTCATCTCTCGTGATCTTAAACTGAAAACCCTAGATGGTATACGCTTACATTTTTTTTATGATTGCAAAGAAGAATTTAAATTAATTAATTAATTAACAAGAGTATAAAGGGTACTCCAGTTTATATATAAAAAAGATCCTACAACGACCAAAAAATCAATATCTATAAGACTAAGACCTAATACAATCAACCTGACATAAACACCATGTCGATCTGTAAGACTTGGCACATATTTGGACTCTAAAAATATATTTGACAAAATCATGATGGCATCGAGGTTTTGTTTAAGATTCAAAGAGTAGTTTTTGCCAAAATCAAAGTGTGGCAAACCCTTATTCTGTGAAATTCGAACAGTTGATACAGTTGGTGTATTATTGATGCACTGGTTTGAGATGCTAATAAAATTTTGGCTATTAACAAAAAAAAAGAAAAAACATAGCACTATGTTCATCTATGCTTACTATAGTTACTAATAAATGCAATTTTTTTTCCTGATCTTTGTAGGTGGTCAATTTACAAGCACAGCTTGCTTTTCTGAAGGAACAAGCAGCTCAAAGGTGTCTCAATGCCCCAAATTCTGAAAACCCTAATGAGAAGAACTTTGGAAAACCTACTAATATTCTCCCTCAAGATCTTCAAAGTTGGTTCCAGATGGAAAATTCCGACATGTGTTCTCAATTTCTTCCCGATTTCTCTTCTTCCACTAATCTCTCATCAACAACACAATATTACAATGGGACTACTAACACTCTCATGGATCTAAACCCTATTGGAAACTATGAAAATTCAGGAACCATATTGGAAGAAAGCATCTCATCATTTTCTACCTTTGATGAGCGATGTAATAATTCAATGTCCTTTGACAACATGCAAAGACAGTGGACCTATCAGTAA
Protein sequence

>MS.gene018725.t1

MMTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAFLKEQAAQRCLNAPNSENPNEKNFGKPTNILPQDLQSWFQMENSDMCSQFLPDFSSSTNLSSTTQYYNGTTNTLMDLNPIGNYENSGTILEESISSFSTFDERCNNSMSFDNMQRQWTYQ