Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018832.t1 | XP_003590372.1 | 91.4 | 314 | 27 | 0 | 1 | 314 | 1 | 314 | 5.90E-140 | 508.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018832.t1 | Q3EAI1 | 42.2 | 393 | 139 | 9 | 2 | 306 | 19 | 411 | 5.7e-51 | 203.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018832.t1 | G7I997 | 91.4 | 314 | 27 | 0 | 1 | 314 | 1 | 314 | 4.3e-140 | 508.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene018832.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018832.t1 | MTR_1g059270 | 97.452 | 314 | 8 | 0 | 1 | 314 | 1 | 314 | 0.0 | 634 |
MS.gene018832.t1 | MTR_1g059270 | 98.367 | 245 | 4 | 0 | 1 | 245 | 1 | 245 | 1.90e-172 | 490 |
MS.gene018832.t1 | MTR_7g092510 | 67.791 | 326 | 79 | 8 | 1 | 306 | 1 | 320 | 4.38e-129 | 383 |
MS.gene018832.t1 | MTR_4g070320 | 56.934 | 137 | 52 | 3 | 115 | 245 | 93 | 228 | 3.64e-39 | 147 |
MS.gene018832.t1 | MTR_7g053410 | 47.778 | 180 | 72 | 5 | 116 | 278 | 259 | 433 | 1.65e-37 | 146 |
MS.gene018832.t1 | MTR_7g053410 | 47.778 | 180 | 72 | 5 | 116 | 278 | 259 | 433 | 2.16e-37 | 146 |
MS.gene018832.t1 | MTR_1g017350 | 44.330 | 194 | 82 | 6 | 104 | 276 | 209 | 397 | 2.41e-37 | 144 |
MS.gene018832.t1 | MTR_1g017350 | 44.330 | 194 | 82 | 6 | 104 | 276 | 209 | 397 | 2.77e-37 | 144 |
MS.gene018832.t1 | MTR_1g017350 | 52.113 | 142 | 63 | 2 | 104 | 245 | 209 | 345 | 3.55e-37 | 144 |
MS.gene018832.t1 | MTR_1g017350 | 52.113 | 142 | 63 | 2 | 104 | 245 | 209 | 345 | 3.99e-37 | 144 |
MS.gene018832.t1 | MTR_3g116770 | 68.041 | 97 | 31 | 0 | 157 | 253 | 188 | 284 | 9.63e-37 | 142 |
MS.gene018832.t1 | MTR_3g116770 | 68.041 | 97 | 31 | 0 | 157 | 253 | 188 | 284 | 9.90e-37 | 142 |
MS.gene018832.t1 | MTR_8g065740 | 55.224 | 134 | 51 | 3 | 112 | 242 | 260 | 387 | 2.67e-36 | 142 |
MS.gene018832.t1 | MTR_8g099880 | 68.367 | 98 | 26 | 3 | 151 | 243 | 134 | 231 | 8.31e-36 | 137 |
MS.gene018832.t1 | MTR_5g048860 | 70.787 | 89 | 26 | 0 | 157 | 245 | 362 | 450 | 1.29e-35 | 141 |
MS.gene018832.t1 | MTR_8g012290 | 43.523 | 193 | 91 | 3 | 144 | 330 | 269 | 449 | 1.64e-35 | 140 |
MS.gene018832.t1 | MTR_8g012290 | 43.523 | 193 | 91 | 3 | 144 | 330 | 269 | 449 | 1.65e-35 | 140 |
MS.gene018832.t1 | MTR_5g037250 | 55.906 | 127 | 50 | 2 | 108 | 231 | 60 | 183 | 5.47e-34 | 130 |
MS.gene018832.t1 | MTR_8g062240 | 69.412 | 85 | 26 | 0 | 157 | 241 | 148 | 232 | 1.10e-33 | 130 |
MS.gene018832.t1 | MTR_3g498825 | 56.098 | 123 | 48 | 3 | 153 | 270 | 138 | 259 | 3.07e-33 | 130 |
MS.gene018832.t1 | MTR_5g037520 | 43.750 | 144 | 68 | 4 | 414 | 546 | 173 | 314 | 6.46e-22 | 99.4 |
MS.gene018832.t1 | MTR_6g084120 | 38.994 | 159 | 69 | 4 | 82 | 237 | 90 | 223 | 6.97e-22 | 96.3 |
MS.gene018832.t1 | MTR_2g036980 | 40.268 | 149 | 48 | 3 | 440 | 547 | 154 | 302 | 1.72e-18 | 88.6 |
MS.gene018832.t1 | MTR_3g091430 | 34.973 | 183 | 95 | 8 | 413 | 585 | 101 | 269 | 1.41e-17 | 84.0 |
MS.gene018832.t1 | MTR_2g438650 | 27.778 | 234 | 121 | 8 | 413 | 607 | 189 | 413 | 2.20e-17 | 85.5 |
MS.gene018832.t1 | MTR_4g131160 | 49.485 | 97 | 39 | 3 | 156 | 248 | 192 | 282 | 5.61e-17 | 84.0 |
MS.gene018832.t1 | MTR_4g131160 | 49.485 | 97 | 39 | 3 | 156 | 248 | 195 | 285 | 6.06e-17 | 84.0 |
MS.gene018832.t1 | MTR_1g080890 | 39.200 | 125 | 68 | 4 | 160 | 282 | 193 | 311 | 5.35e-16 | 80.5 |
MS.gene018832.t1 | MTR_7g056053 | 39.326 | 89 | 46 | 2 | 414 | 502 | 24 | 104 | 2.50e-12 | 68.9 |
MS.gene018832.t1 | MTR_1g093780 | 41.176 | 85 | 42 | 2 | 383 | 464 | 95 | 174 | 2.85e-12 | 69.7 |
MS.gene018832.t1 | MTR_1g069155 | 46.377 | 69 | 36 | 1 | 162 | 230 | 319 | 386 | 1.09e-11 | 68.2 |
MS.gene018832.t1 | MTR_3g449770 | 29.457 | 129 | 89 | 2 | 162 | 290 | 311 | 437 | 1.21e-11 | 67.8 |
MS.gene018832.t1 | MTR_7g099540 | 32.394 | 142 | 86 | 2 | 98 | 230 | 181 | 321 | 1.34e-11 | 67.4 |
MS.gene018832.t1 | MTR_1g052605 | 70.000 | 50 | 13 | 1 | 558 | 605 | 10 | 59 | 1.42e-11 | 63.2 |
MS.gene018832.t1 | MTR_4g033295 | 42.254 | 71 | 40 | 1 | 153 | 223 | 112 | 181 | 2.89e-11 | 63.2 |
MS.gene018832.t1 | MTR_4g033295 | 44.444 | 72 | 39 | 1 | 153 | 224 | 112 | 182 | 3.97e-11 | 63.2 |
MS.gene018832.t1 | MTR_1g070870 | 48.864 | 88 | 39 | 3 | 159 | 241 | 119 | 205 | 5.08e-11 | 64.3 |
MS.gene018832.t1 | MTR_1g070870 | 48.864 | 88 | 39 | 3 | 159 | 241 | 122 | 208 | 5.54e-11 | 64.3 |
MS.gene018832.t1 | MTR_1g084980 | 41.429 | 70 | 40 | 1 | 163 | 232 | 465 | 533 | 7.85e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018832.t1 | AT3G57800 | 51.497 | 334 | 115 | 10 | 2 | 294 | 19 | 346 | 3.38e-84 | 269 |
MS.gene018832.t1 | AT2G42300 | 51.118 | 313 | 104 | 11 | 6 | 295 | 20 | 306 | 8.91e-77 | 248 |
MS.gene018832.t1 | AT3G57800 | 45.144 | 381 | 115 | 11 | 2 | 294 | 19 | 393 | 5.99e-75 | 246 |
MS.gene018832.t1 | AT2G42300 | 52.416 | 269 | 81 | 8 | 6 | 245 | 20 | 270 | 2.34e-67 | 221 |
MS.gene018832.t1 | AT1G26260 | 36.727 | 275 | 118 | 9 | 58 | 278 | 67 | 339 | 5.76e-42 | 156 |
MS.gene018832.t1 | AT1G26260 | 36.727 | 275 | 118 | 9 | 58 | 278 | 67 | 339 | 5.76e-42 | 156 |
MS.gene018832.t1 | AT1G26260 | 36.727 | 275 | 118 | 9 | 58 | 278 | 67 | 339 | 5.76e-42 | 156 |
MS.gene018832.t1 | AT1G26260 | 36.727 | 275 | 118 | 9 | 58 | 278 | 67 | 339 | 5.76e-42 | 156 |
MS.gene018832.t1 | AT3G07340 | 46.117 | 206 | 80 | 6 | 71 | 245 | 138 | 343 | 2.59e-41 | 155 |
MS.gene018832.t1 | AT3G07340 | 46.117 | 206 | 80 | 6 | 71 | 245 | 138 | 343 | 5.02e-41 | 155 |
MS.gene018832.t1 | AT1G26260 | 47.305 | 167 | 77 | 4 | 121 | 278 | 124 | 288 | 2.31e-40 | 150 |
MS.gene018832.t1 | AT1G26260 | 47.024 | 168 | 78 | 4 | 120 | 278 | 152 | 317 | 4.53e-40 | 150 |
MS.gene018832.t1 | AT2G42300 | 46.188 | 223 | 73 | 8 | 6 | 199 | 20 | 224 | 1.03e-39 | 145 |
MS.gene018832.t1 | AT2G42300 | 46.188 | 223 | 73 | 8 | 6 | 199 | 20 | 224 | 1.19e-39 | 145 |
MS.gene018832.t1 | AT2G42300 | 46.188 | 223 | 73 | 8 | 6 | 199 | 20 | 224 | 1.19e-39 | 145 |
MS.gene018832.t1 | AT1G68920 | 59.829 | 117 | 41 | 2 | 157 | 268 | 299 | 414 | 4.81e-39 | 150 |
MS.gene018832.t1 | AT1G68920 | 59.829 | 117 | 41 | 2 | 157 | 268 | 300 | 415 | 4.89e-39 | 150 |
MS.gene018832.t1 | AT1G68920 | 59.829 | 117 | 41 | 2 | 157 | 268 | 300 | 415 | 4.89e-39 | 150 |
MS.gene018832.t1 | AT1G68920 | 59.829 | 117 | 41 | 2 | 157 | 268 | 300 | 415 | 4.89e-39 | 150 |
MS.gene018832.t1 | AT3G23690 | 47.938 | 194 | 84 | 6 | 117 | 295 | 144 | 335 | 5.44e-38 | 145 |
MS.gene018832.t1 | AT1G10120 | 51.748 | 143 | 61 | 1 | 113 | 255 | 167 | 301 | 2.22e-37 | 143 |
MS.gene018832.t1 | AT1G10120 | 51.748 | 143 | 61 | 1 | 113 | 255 | 167 | 301 | 2.22e-37 | 143 |
MS.gene018832.t1 | AT4G34530 | 69.663 | 89 | 27 | 0 | 157 | 245 | 169 | 257 | 7.64e-36 | 138 |
MS.gene018832.t1 | AT5G48560 | 68.478 | 92 | 28 | 1 | 157 | 247 | 298 | 389 | 4.60e-35 | 138 |
MS.gene018832.t1 | AT5G48560 | 68.478 | 92 | 28 | 1 | 157 | 247 | 298 | 389 | 8.25e-35 | 138 |
MS.gene018832.t1 | AT2G18300 | 45.806 | 155 | 61 | 2 | 122 | 259 | 130 | 278 | 1.70e-34 | 134 |
MS.gene018832.t1 | AT5G50915 | 47.561 | 164 | 71 | 8 | 114 | 267 | 89 | 247 | 1.94e-34 | 132 |
MS.gene018832.t1 | AT5G50915 | 47.561 | 164 | 71 | 8 | 114 | 267 | 89 | 247 | 1.94e-34 | 132 |
MS.gene018832.t1 | AT5G50915 | 47.561 | 164 | 71 | 8 | 114 | 267 | 89 | 247 | 4.47e-34 | 131 |
MS.gene018832.t1 | AT5G50915 | 47.561 | 164 | 71 | 8 | 114 | 267 | 89 | 247 | 4.47e-34 | 131 |
MS.gene018832.t1 | AT4G36540 | 48.201 | 139 | 65 | 3 | 115 | 246 | 89 | 227 | 1.46e-33 | 130 |
MS.gene018832.t1 | AT1G59640 | 78.667 | 75 | 16 | 0 | 157 | 231 | 133 | 207 | 1.63e-33 | 129 |
MS.gene018832.t1 | AT4G36540 | 48.551 | 138 | 64 | 3 | 115 | 245 | 89 | 226 | 1.63e-33 | 130 |
MS.gene018832.t1 | AT2G18300 | 46.715 | 137 | 56 | 1 | 122 | 241 | 130 | 266 | 1.64e-33 | 131 |
MS.gene018832.t1 | AT2G18300 | 46.715 | 137 | 56 | 1 | 122 | 241 | 130 | 266 | 3.50e-33 | 131 |
MS.gene018832.t1 | AT1G59640 | 67.021 | 94 | 31 | 0 | 157 | 250 | 133 | 226 | 3.81e-33 | 130 |
MS.gene018832.t1 | AT5G62610 | 72.000 | 75 | 21 | 0 | 157 | 231 | 150 | 224 | 8.12e-30 | 119 |
MS.gene018832.t1 | AT5G62610 | 72.000 | 75 | 21 | 0 | 157 | 231 | 150 | 224 | 8.12e-30 | 119 |
MS.gene018832.t1 | AT1G18400 | 67.500 | 80 | 26 | 0 | 158 | 237 | 143 | 222 | 1.13e-29 | 118 |
MS.gene018832.t1 | AT1G18400 | 67.500 | 80 | 26 | 0 | 158 | 237 | 143 | 222 | 1.92e-29 | 117 |
MS.gene018832.t1 | AT1G73830 | 67.089 | 79 | 26 | 0 | 159 | 237 | 146 | 224 | 6.99e-29 | 116 |
MS.gene018832.t1 | AT1G73830 | 67.089 | 79 | 26 | 0 | 159 | 237 | 146 | 224 | 7.29e-29 | 116 |
MS.gene018832.t1 | AT1G25330 | 61.538 | 91 | 31 | 1 | 151 | 237 | 91 | 181 | 4.20e-28 | 112 |
MS.gene018832.t1 | AT2G24260 | 60.606 | 66 | 25 | 1 | 160 | 225 | 35 | 99 | 1.43e-16 | 80.1 |
MS.gene018832.t1 | AT4G30980 | 62.121 | 66 | 24 | 1 | 160 | 225 | 130 | 194 | 2.88e-16 | 80.5 |
MS.gene018832.t1 | AT5G58010 | 61.194 | 67 | 25 | 1 | 159 | 225 | 98 | 163 | 5.21e-16 | 79.7 |
MS.gene018832.t1 | AT2G24260 | 60.606 | 66 | 25 | 1 | 160 | 225 | 138 | 202 | 5.39e-16 | 80.5 |
MS.gene018832.t1 | AT4G30980 | 62.121 | 66 | 24 | 1 | 160 | 225 | 178 | 242 | 5.61e-16 | 80.5 |
MS.gene018832.t1 | AT2G20180 | 39.286 | 112 | 53 | 3 | 117 | 225 | 172 | 271 | 4.46e-14 | 75.1 |
MS.gene018832.t1 | AT2G20180 | 39.286 | 112 | 53 | 3 | 117 | 225 | 172 | 271 | 4.46e-14 | 75.1 |
MS.gene018832.t1 | AT2G20180 | 39.286 | 112 | 53 | 3 | 117 | 225 | 172 | 271 | 4.46e-14 | 75.1 |
MS.gene018832.t1 | AT2G20180 | 39.286 | 112 | 53 | 3 | 117 | 225 | 243 | 342 | 7.20e-14 | 74.7 |
MS.gene018832.t1 | AT2G20180 | 39.286 | 112 | 53 | 3 | 117 | 225 | 243 | 342 | 7.20e-14 | 74.7 |
MS.gene018832.t1 | AT2G20180 | 39.286 | 112 | 53 | 3 | 117 | 225 | 243 | 342 | 7.20e-14 | 74.7 |
MS.gene018832.t1 | AT2G20180 | 39.286 | 112 | 53 | 3 | 117 | 225 | 243 | 342 | 7.20e-14 | 74.7 |
MS.gene018832.t1 | AT2G20180 | 38.532 | 109 | 52 | 3 | 117 | 222 | 243 | 339 | 8.02e-13 | 70.5 |
MS.gene018832.t1 | AT4G28800 | 42.466 | 73 | 41 | 1 | 163 | 235 | 252 | 323 | 8.99e-12 | 68.2 |
MS.gene018832.t1 | AT4G28815 | 36.082 | 97 | 57 | 2 | 163 | 255 | 71 | 166 | 1.98e-11 | 64.7 |
MS.gene018832.t1 | AT1G09530 | 46.032 | 63 | 33 | 1 | 163 | 225 | 340 | 401 | 2.85e-11 | 66.6 |
MS.gene018832.t1 | AT1G09530 | 46.032 | 63 | 33 | 1 | 163 | 225 | 340 | 401 | 2.85e-11 | 66.6 |
MS.gene018832.t1 | AT1G09530 | 46.032 | 63 | 33 | 1 | 163 | 225 | 340 | 401 | 2.85e-11 | 66.6 |
MS.gene018832.t1 | AT1G09530 | 46.032 | 63 | 33 | 1 | 163 | 225 | 340 | 401 | 2.85e-11 | 66.6 |
MS.gene018832.t1 | AT1G09530 | 46.032 | 63 | 33 | 1 | 163 | 225 | 340 | 401 | 2.85e-11 | 66.6 |
MS.gene018832.t1 | AT1G09530 | 46.032 | 63 | 33 | 1 | 163 | 225 | 340 | 401 | 2.85e-11 | 66.6 |
MS.gene018832.t1 | AT2G43140 | 45.070 | 71 | 38 | 1 | 153 | 223 | 128 | 197 | 3.47e-11 | 63.5 |
Find 151 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCCATTGTGTGGGATTTC+TGG | 0.105980 | 1.2:+38054847 | None:intergenic |
TATTCTATGAAATGGGTTTC+TGG | 0.135748 | 1.2:-38052736 | MS.gene018832:CDS |
CTCTTCTTGTTGATATATTA+AGG | 0.204372 | 1.2:-38051589 | MS.gene018832:CDS |
ATGTTTGGAATTGGACTTAA+AGG | 0.219504 | 1.2:+38051644 | None:intergenic |
TCAAGGTTGAAGTCAATTAT+TGG | 0.240634 | 1.2:+38055536 | None:intergenic |
TTCCTTCCTCTTCGCACTCT+TGG | 0.267664 | 1.2:+38058537 | None:intergenic |
AAACTTATTATTCTATGAAA+TGG | 0.268930 | 1.2:-38052744 | MS.gene018832:CDS |
TGCATTCCACCAACCACTTT+GGG | 0.284445 | 1.2:-38054791 | MS.gene018832:CDS |
ATCAGGAACAGCATTGGTTT+TGG | 0.289474 | 1.2:-38056197 | MS.gene018832:CDS |
TTCTGGTCTTGAACCATGTT+TGG | 0.291157 | 1.2:-38052719 | MS.gene018832:CDS |
ACTGAACTCGTAGAAGCTTT+TGG | 0.297391 | 1.2:+38051740 | None:intergenic |
ACCACTTTGTTTGAGATTGC+AGG | 0.304111 | 1.2:-38051993 | MS.gene018832:CDS |
CTTCACTCGTCGGAGATTAC+CGG | 0.318302 | 1.2:-38058769 | MS.gene018832:CDS |
AAATTTGCTTTACAGATATC+AGG | 0.320893 | 1.2:-38056214 | MS.gene018832:intron |
TATGACTCATCGGCAAATTC+AGG | 0.337138 | 1.2:-38054715 | MS.gene018832:intron |
CCTGCCACAATGTTTGGAAT+TGG | 0.337821 | 1.2:+38051635 | None:intergenic |
TTTCTGGGGTCATGAAATTA+GGG | 0.358922 | 1.2:+38054752 | None:intergenic |
CAAGGTTGAAGTCAATTATT+GGG | 0.363121 | 1.2:+38055537 | None:intergenic |
GCTTCAACATTTGATGCAAT+AGG | 0.368306 | 1.2:+38051689 | None:intergenic |
CGGAAGCTCATCGCCGTTGC+CGG | 0.381962 | 1.2:+38058366 | None:intergenic |
ACAACGGGTGAAACTGAGTT+AGG | 0.393197 | 1.2:+38054874 | None:intergenic |
AAAGATTGATGATACAAGTA+TGG | 0.394847 | 1.2:+38052692 | None:intergenic |
ATGCATTCCACCAACCACTT+TGG | 0.397314 | 1.2:-38054792 | MS.gene018832:CDS |
AACTTATTATTCTATGAAAT+GGG | 0.403765 | 1.2:-38052743 | MS.gene018832:CDS |
ATCGCCGCCGACGAGAATTC+CGG | 0.408348 | 1.2:-38058385 | MS.gene018832:CDS |
TCAGAGTCGGTTGGAAAACC+TGG | 0.413514 | 1.2:-38054220 | MS.gene018832:CDS |
GGAAGGGAAAGTTAAATTAC+CGG | 0.419559 | 1.2:+38058711 | None:intergenic |
TTGATAAGGCCACTAAGAAT+AGG | 0.420130 | 1.2:-38051947 | MS.gene018832:CDS |
CGGTAAGTTCAGCGAGTTTG+TGG | 0.421680 | 1.2:+38058633 | None:intergenic |
CAAAGATGGATATGCATTCA+TGG | 0.423749 | 1.2:-38052041 | MS.gene018832:CDS |
ACCGAAAGTCCTATTCTTAG+TGG | 0.429607 | 1.2:+38051938 | None:intergenic |
GAGTTCGCTGTTTCCGTCGC+CGG | 0.429642 | 1.2:+38058838 | None:intergenic |
CAAGTCAGTGGATAGGGTTT+CGG | 0.429991 | 1.2:+38058739 | None:intergenic |
GCCACTAAGAATAGGACTTT+CGG | 0.435519 | 1.2:-38051939 | MS.gene018832:CDS |
TGCTGTCTGTTTCCATTGTG+TGG | 0.436586 | 1.2:+38054838 | None:intergenic |
GGGATTTCTGGCCACACAAC+GGG | 0.443557 | 1.2:+38054859 | None:intergenic |
GGACTTTCGGTCACTTCGCT+AGG | 0.444182 | 1.2:-38051926 | MS.gene018832:CDS |
CGAAGAAATTCAAGGAATCA+TGG | 0.453331 | 1.2:-38058863 | MS.gene018832:CDS |
CTTCTTCCTTGCTAGCCTGT+TGG | 0.454803 | 1.2:+38054186 | None:intergenic |
GTGCAATTCCTGTGCAACTA+AGG | 0.459129 | 1.2:-38051490 | MS.gene018832:CDS |
GACCAAACCTTGTTGCAACC+TGG | 0.459346 | 1.2:+38057774 | None:intergenic |
CTGTTGGCTGAATAAAATCC+AGG | 0.459891 | 1.2:+38054202 | None:intergenic |
AGATGAAGATGGAGCTATGA+AGG | 0.464102 | 1.2:-38054366 | MS.gene018832:CDS |
CATCCACCTTCTTCATTCTC+CGG | 0.464454 | 1.2:+38058592 | None:intergenic |
CTGTCTGCTTGCAGCCACTC+TGG | 0.465417 | 1.2:-38052787 | MS.gene018832:intron |
TGTAGGAGATATCTTTACTA+AGG | 0.472104 | 1.2:-38051540 | MS.gene018832:CDS |
CCACTTTGTTTGAGATTGCA+GGG | 0.472747 | 1.2:-38051992 | MS.gene018832:CDS |
AATGAAACTGTTGCAAGAGC+TGG | 0.476800 | 1.2:-38057799 | MS.gene018832:CDS |
ACTAGTAGCTGCCATGTCCT+TGG | 0.481319 | 1.2:+38051565 | None:intergenic |
CAATTCAACGAAGAAATTCA+AGG | 0.489910 | 1.2:-38058871 | MS.gene018832:CDS |
GTGTTGCAAGTCAGTGGATA+GGG | 0.490731 | 1.2:+38058733 | None:intergenic |
ATGGTCTTACCCATGAGTAT+TGG | 0.491038 | 1.2:-38052022 | MS.gene018832:CDS |
TCCACCTGCCTTAGTTGCAC+AGG | 0.491137 | 1.2:+38051482 | None:intergenic |
TGTCCTCTGTTTGTCAGAGT+CGG | 0.492707 | 1.2:-38054233 | MS.gene018832:CDS |
TTACCCTTTCTGCTAAGCTA+TGG | 0.495150 | 1.2:+38058302 | None:intergenic |
ACCAAACCTTGTTGCAACCT+GGG | 0.495296 | 1.2:+38057775 | None:intergenic |
GCACTCAAATCAGATGAAGA+TGG | 0.500237 | 1.2:-38054377 | MS.gene018832:CDS |
GAGCAGGCACAACATTCAGC+AGG | 0.501059 | 1.2:-38054263 | MS.gene018832:intron |
TGGTGGACCGCCAATACTCA+TGG | 0.505182 | 1.2:+38052012 | None:intergenic |
TCAACCAACGCGGCGTTGGA+AGG | 0.508170 | 1.2:+38058694 | None:intergenic |
GTCTTACCCATGAGTATTGG+CGG | 0.509218 | 1.2:-38052019 | MS.gene018832:CDS |
CTCTGTTTGTCAGAGTCGGT+TGG | 0.512545 | 1.2:-38054229 | MS.gene018832:CDS |
CTGTTGCAAGAGCTGGTCCC+AGG | 0.513301 | 1.2:-38057792 | MS.gene018832:CDS |
AGGAATCATGGCTCCGGCGA+CGG | 0.514735 | 1.2:-38058851 | MS.gene018832:CDS |
GAGGAAGGAACGAGAAAAGA+AGG | 0.515738 | 1.2:-38058524 | MS.gene018832:intron |
AGCTCAACAACCTGCGTCGG+TGG | 0.517334 | 1.2:+38058793 | None:intergenic |
TCGATGCGCCATGCTTAAAG+AGG | 0.517812 | 1.2:-38052665 | MS.gene018832:CDS |
GCTGTCTGTTTCCATTGTGT+GGG | 0.520796 | 1.2:+38054839 | None:intergenic |
TAGCCATAGCTTAGCAGAAA+GGG | 0.520877 | 1.2:-38058305 | MS.gene018832:intron |
TGACGGTGCTAGTGTGCCTC+GGG | 0.522536 | 1.2:-38051274 | MS.gene018832:CDS |
CGCCATGCTTAAAGAGGCGT+TGG | 0.527613 | 1.2:-38052659 | MS.gene018832:CDS |
ATGACGGTGCTAGTGTGCCT+CGG | 0.533157 | 1.2:-38051275 | MS.gene018832:CDS |
TGTTGATATATTAAGGTCCA+AGG | 0.533347 | 1.2:-38051582 | MS.gene018832:CDS |
ATGGCAGCTACTAGTTATGT+AGG | 0.534974 | 1.2:-38051557 | MS.gene018832:CDS |
CCAATTCCAAACATTGTGGC+AGG | 0.536881 | 1.2:-38051635 | MS.gene018832:CDS |
TGTTGAGCTTCTTCACTCGT+CGG | 0.537222 | 1.2:-38058779 | MS.gene018832:CDS |
ACAGATATCAGGAACAGCAT+TGG | 0.547071 | 1.2:-38056203 | MS.gene018832:intron |
AATTCCTGTGCAACTAAGGC+AGG | 0.550081 | 1.2:-38051486 | MS.gene018832:CDS |
GGTGTTGCAAGTCAGTGGAT+AGG | 0.551839 | 1.2:+38058732 | None:intergenic |
AGCATACCTATGCTCAAAGA+TGG | 0.552573 | 1.2:-38052055 | MS.gene018832:CDS |
AATTCAAGGAATCATGGCTC+CGG | 0.553332 | 1.2:-38058857 | MS.gene018832:CDS |
CAACCAACGCGGCGTTGGAA+GGG | 0.553760 | 1.2:+38058695 | None:intergenic |
TTTCCCTTCCAACGCCGCGT+TGG | 0.556664 | 1.2:-38058698 | MS.gene018832:CDS |
TGCCTCGGGTTCATACCGAC+GGG | 0.565655 | 1.2:-38051260 | MS.gene018832:CDS |
ATTCAGCCAACAGGCTAGCA+AGG | 0.565949 | 1.2:-38054192 | MS.gene018832:CDS |
GCCGACGAGAATTCCGGCAA+CGG | 0.567888 | 1.2:-38058379 | MS.gene018832:CDS |
GACTTTCGGTCACTTCGCTA+GGG | 0.569176 | 1.2:-38051925 | MS.gene018832:intron |
GAGCTACCGGAGAATGAAGA+AGG | 0.569193 | 1.2:-38058598 | MS.gene018832:CDS |
GATGAAGATGGAGCTATGAA+GGG | 0.570787 | 1.2:-38054365 | MS.gene018832:CDS |
CTGCAGCTAATATGCTGTCA+AGG | 0.571111 | 1.2:+38055519 | None:intergenic |
TTCCAAGAGTGCGAAGAGGA+AGG | 0.571829 | 1.2:-38058539 | MS.gene018832:CDS |
GCATATCCATCTTTGAGCAT+AGG | 0.572316 | 1.2:+38052049 | None:intergenic |
CAACGGGTGAAACTGAGTTA+GGG | 0.575367 | 1.2:+38054875 | None:intergenic |
TATATTAAGGTCCAAGGACA+TGG | 0.577521 | 1.2:-38051576 | MS.gene018832:CDS |
GCAGGTGAAGGATGAGCTAC+CGG | 0.582554 | 1.2:-38058611 | MS.gene018832:CDS |
GTGCCTCGGGTTCATACCGA+CGG | 0.587233 | 1.2:-38051261 | MS.gene018832:CDS |
GTCAGTGGATAGGGTTTCGG+CGG | 0.587492 | 1.2:+38058742 | None:intergenic |
CTTGTAGGGAATGTCTCTCA+TGG | 0.587902 | 1.2:-38054908 | MS.gene018832:intron |
ACTTCTAAGTTATGACTCAT+CGG | 0.587921 | 1.2:-38054725 | MS.gene018832:CDS |
ACTCAGTTTCACCCGTTGTG+TGG | 0.590002 | 1.2:-38054870 | MS.gene018832:CDS |
GACCAACGCCTCTTTAAGCA+TGG | 0.590815 | 1.2:+38052657 | None:intergenic |
AGGTAAAATTGTTATAGAAG+AGG | 0.592227 | 1.2:-38051615 | MS.gene018832:CDS |
CTTAATATATCAACAAGAAG+AGG | 0.592457 | 1.2:+38051590 | None:intergenic |
GCCGTTGCCGGAATTCTCGT+CGG | 0.594568 | 1.2:+38058378 | None:intergenic |
GCGTTCAACCAACGCGGCGT+TGG | 0.594819 | 1.2:+38058690 | None:intergenic |
TGCAATCTCAAACAAAGTGG+TGG | 0.595585 | 1.2:+38051995 | None:intergenic |
TCCTGTGCAACTAAGGCAGG+TGG | 0.595637 | 1.2:-38051483 | MS.gene018832:CDS |
TCCCCGTCGGTATGAACCCG+AGG | 0.598457 | 1.2:+38051258 | None:intergenic |
CAAGTATGGTGATCCAAACA+TGG | 0.598714 | 1.2:+38052706 | None:intergenic |
ATAGCCATAGCTTAGCAGAA+AGG | 0.599793 | 1.2:-38058306 | MS.gene018832:CDS |
TCTTGAACTTCCACCGACGC+AGG | 0.600193 | 1.2:-38058803 | MS.gene018832:CDS |
TATCCACTGACTTGCAACAC+CGG | 0.603238 | 1.2:-38058730 | MS.gene018832:CDS |
CATTCCACCAACCACTTTGG+GGG | 0.604196 | 1.2:-38054789 | MS.gene018832:CDS |
CGAACTCGAACGTGAACGTA+CGG | 0.605120 | 1.2:+38058346 | None:intergenic |
ATCTCTACAGCATGAAGTGG+AGG | 0.605371 | 1.2:-38056152 | MS.gene018832:intron |
CACTTTGTTTGAGATTGCAG+GGG | 0.605443 | 1.2:-38051991 | MS.gene018832:CDS |
GGTGGACCGCCAATACTCAT+GGG | 0.607339 | 1.2:+38052013 | None:intergenic |
GCATTCCACCAACCACTTTG+GGG | 0.608496 | 1.2:-38054790 | MS.gene018832:CDS |
GAATTGAATCGACTCGAACG+TGG | 0.610167 | 1.2:+38058888 | None:intergenic |
TTACCGGTGTTGCAAGTCAG+TGG | 0.611762 | 1.2:+38058727 | None:intergenic |
GCAATCTCTACAGCATGAAG+TGG | 0.613170 | 1.2:-38056155 | MS.gene018832:CDS |
ATCAAATGTTGAAGCTGAGA+AGG | 0.616634 | 1.2:-38051681 | MS.gene018832:CDS |
CCCTGCAATCTCAAACAAAG+TGG | 0.616828 | 1.2:+38051992 | None:intergenic |
AAGTCCAATTCCAAACATTG+TGG | 0.617655 | 1.2:-38051639 | MS.gene018832:CDS |
GCTGAACTTACCGCAGGTGA+AGG | 0.628100 | 1.2:-38058623 | MS.gene018832:CDS |
TGGATGTGTCTCTGATCCAA+CGG | 0.628322 | 1.2:-38058575 | MS.gene018832:CDS |
TGGGATTTCTGGCCACACAA+CGG | 0.638264 | 1.2:+38054858 | None:intergenic |
AGCTCAAGCTGAGAAACAAG+TGG | 0.639427 | 1.2:-38051450 | MS.gene018832:CDS |
AAACTCGCTGAACTTACCGC+AGG | 0.646946 | 1.2:-38058629 | MS.gene018832:CDS |
GGCGAAAACGGAGAATCTAG+CGG | 0.653244 | 1.2:+38058666 | None:intergenic |
CTACCGGAGAATGAAGAAGG+TGG | 0.653905 | 1.2:-38058595 | MS.gene018832:CDS |
GACAGCAATTTCAGCAACCG+TGG | 0.654068 | 1.2:-38054822 | MS.gene018832:CDS |
TGGCCAGAAATCCCACACAA+TGG | 0.662181 | 1.2:-38054850 | MS.gene018832:CDS |
GCTGGTCCCAGGTTGCAACA+AGG | 0.662336 | 1.2:-38057781 | MS.gene018832:intron |
ATGAAGATGGAGCTATGAAG+GGG | 0.663574 | 1.2:-38054364 | MS.gene018832:intron |
TGAAGCTGAGAAGGTTGTTG+AGG | 0.665708 | 1.2:-38051672 | MS.gene018832:CDS |
AGAAGCTCAACAACCTGCGT+CGG | 0.670527 | 1.2:+38058790 | None:intergenic |
CGAATTCCAAGAGTGCGAAG+AGG | 0.670718 | 1.2:-38058543 | MS.gene018832:CDS |
ATAAGACAGGGATTGGAGCG+AGG | 0.672724 | 1.2:-38054619 | MS.gene018832:intron |
CAACCGACTCTGACAAACAG+AGG | 0.673114 | 1.2:+38054230 | None:intergenic |
GGTAGCTCATCCTTCACCTG+CGG | 0.677655 | 1.2:+38058613 | None:intergenic |
CGGTGGAAGTTCAAGAAGTG+CGG | 0.677977 | 1.2:+38058810 | None:intergenic |
TGGAATGCATCAGATTGCCA+CGG | 0.686804 | 1.2:+38054805 | None:intergenic |
GTTGCCGGAATTCTCGTCGG+CGG | 0.688782 | 1.2:+38058381 | None:intergenic |
CATGCTGTAGAGATTGCACA+TGG | 0.704416 | 1.2:+38056161 | None:intergenic |
TCAAGCTGAGAAACAAGTGG+AGG | 0.704627 | 1.2:-38051447 | MS.gene018832:CDS |
AGTTGTTCAGAAACAACATG+TGG | 0.713306 | 1.2:-38051717 | MS.gene018832:CDS |
GCCTCGGGTTCATACCGACG+GGG | 0.716467 | 1.2:-38051259 | MS.gene018832:CDS |
TTTCACTAACAAGACCAGAG+TGG | 0.755614 | 1.2:+38052773 | None:intergenic |
GTTCACGTTCGAGTTCGACG+AGG | 0.757130 | 1.2:-38058340 | MS.gene018832:CDS |
AGCGGCGCGTTCAACCAACG+CGG | 0.762532 | 1.2:+38058684 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 38051209 | 38058920 | 38051209 | ID=MS.gene018832 |
chr1.2 | mRNA | 38051209 | 38058920 | 38051209 | ID=MS.gene018832.t1;Parent=MS.gene018832 |
chr1.2 | exon | 38058525 | 38058920 | 38058525 | ID=MS.gene018832.t1.exon1;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38058525 | 38058920 | 38058525 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38058306 | 38058437 | 38058306 | ID=MS.gene018832.t1.exon2;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38058306 | 38058437 | 38058306 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38057782 | 38057847 | 38057782 | ID=MS.gene018832.t1.exon3;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38057782 | 38057847 | 38057782 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38056153 | 38056221 | 38056153 | ID=MS.gene018832.t1.exon4;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38056153 | 38056221 | 38056153 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38055517 | 38055588 | 38055517 | ID=MS.gene018832.t1.exon5;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38055517 | 38055588 | 38055517 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38054716 | 38054923 | 38054716 | ID=MS.gene018832.t1.exon6;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38054716 | 38054923 | 38054716 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38054620 | 38054632 | 38054620 | ID=MS.gene018832.t1.exon7;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38054620 | 38054632 | 38054620 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38054365 | 38054406 | 38054365 | ID=MS.gene018832.t1.exon8;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38054365 | 38054406 | 38054365 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38054181 | 38054279 | 38054181 | ID=MS.gene018832.t1.exon9;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38054181 | 38054279 | 38054181 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38052657 | 38052795 | 38052657 | ID=MS.gene018832.t1.exon10;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38052657 | 38052795 | 38052657 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38051926 | 38052075 | 38051926 | ID=MS.gene018832.t1.exon11;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38051926 | 38052075 | 38051926 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38051438 | 38051801 | 38051438 | ID=MS.gene018832.t1.exon12;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38051438 | 38051801 | 38051438 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
chr1.2 | exon | 38051209 | 38051315 | 38051209 | ID=MS.gene018832.t1.exon13;Parent=MS.gene018832.t1 |
chr1.2 | CDS | 38051209 | 38051315 | 38051209 | ID=cds.MS.gene018832.t1;Parent=MS.gene018832.t1 |
Gene Sequence |
Protein sequence |