AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018852

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018852.t1 MTR_1g093095 74.419 172 41 1 79 247 99 270 1.71e-98 290
MS.gene018852.t1 MTR_1g016010 35.915 142 80 5 87 226 62 194 6.77e-20 88.6
MS.gene018852.t1 MTR_1g112270 34.932 146 85 5 82 226 60 196 1.47e-19 88.2
MS.gene018852.t1 MTR_1g112270 34.932 146 85 5 82 226 71 207 1.61e-19 87.8
MS.gene018852.t1 MTR_4g059870 35.971 139 80 4 89 226 61 191 1.70e-19 87.8
MS.gene018852.t1 MTR_1g094115 37.226 137 74 6 92 226 56 182 1.75e-19 87.8
MS.gene018852.t1 MTR_1g094115 35.374 147 83 6 82 226 63 199 2.34e-19 87.4
MS.gene018852.t1 MTR_2g093960 35.971 139 80 4 89 226 55 185 6.96e-19 85.5
MS.gene018852.t1 MTR_2g090745 33.742 163 97 6 65 226 7 159 7.70e-19 85.5
MS.gene018852.t1 MTR_8g017210 34.286 140 80 5 89 226 85 214 7.93e-19 85.9
MS.gene018852.t1 MTR_2g099990 33.333 147 86 5 82 226 62 198 1.51e-18 84.7
MS.gene018852.t1 MTR_2g099990 33.813 139 80 5 90 226 1 129 1.17e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018852.t1 AT3G57670 76.718 262 39 4 19 258 122 383 5.98e-140 398
MS.gene018852.t1 AT1G51220 67.932 237 71 2 19 250 101 337 1.30e-117 340
MS.gene018852.t1 AT3G20880 68.201 239 65 6 19 250 176 410 8.97e-113 330
MS.gene018852.t1 AT1G13290 66.516 221 43 4 17 235 52 243 5.23e-103 301
MS.gene018852.t1 AT1G08290 56.175 251 100 4 3 243 82 332 9.08e-100 295
MS.gene018852.t1 AT1G34790 61.039 231 76 1 19 249 83 299 3.77e-98 289
MS.gene018852.t1 AT1G34370 35.028 177 100 5 89 256 28 198 4.73e-26 103
MS.gene018852.t1 AT1G34370 38.816 152 81 5 89 231 238 386 9.99e-26 105
MS.gene018852.t1 AT1G34370 38.816 152 81 5 89 231 238 386 9.99e-26 105
MS.gene018852.t1 AT5G22890 39.103 156 82 6 89 234 211 363 1.97e-23 97.8
MS.gene018852.t1 AT1G55110 36.620 142 79 5 87 226 84 216 3.22e-20 89.7
MS.gene018852.t1 AT1G55110 36.620 142 79 5 87 226 84 216 3.22e-20 89.7
MS.gene018852.t1 AT1G55110 36.620 142 79 5 87 226 84 216 3.22e-20 89.7
MS.gene018852.t1 AT2G02070 34.194 155 92 4 73 226 59 204 9.44e-20 88.6
MS.gene018852.t1 AT2G02070 34.194 155 92 4 73 226 59 204 9.44e-20 88.6
MS.gene018852.t1 AT5G03150 32.353 170 98 5 89 257 76 229 1.19e-19 88.2
MS.gene018852.t1 AT2G02080 35.461 141 81 4 87 226 75 206 1.57e-19 87.8
MS.gene018852.t1 AT2G02080 35.461 141 81 4 87 226 75 206 1.57e-19 87.8
MS.gene018852.t1 AT2G02080 35.461 141 81 4 87 226 75 206 1.57e-19 87.8
MS.gene018852.t1 AT2G02080 35.461 141 81 4 87 226 75 206 1.57e-19 87.8
MS.gene018852.t1 AT1G14580 35.616 146 84 4 82 226 69 205 5.68e-19 86.3
MS.gene018852.t1 AT1G14580 35.616 146 84 4 82 226 69 205 5.68e-19 86.3
MS.gene018852.t1 AT1G14580 35.616 146 84 4 82 226 83 219 6.19e-19 85.9
MS.gene018852.t1 AT2G02080 36.232 138 78 4 90 226 1 129 6.80e-19 85.9
MS.gene018852.t1 AT2G02080 36.232 138 78 4 90 226 1 129 6.80e-19 85.9
MS.gene018852.t1 AT5G66730 35.915 142 79 6 87 226 53 184 1.44e-18 85.1
MS.gene018852.t1 AT3G45260 35.971 139 80 4 89 226 62 192 1.04e-17 82.4
MS.gene018852.t1 AT3G45260 35.971 139 80 4 89 226 62 192 1.04e-17 82.4
MS.gene018852.t1 AT5G60470 33.813 139 83 4 89 226 58 188 1.41e-17 82.0
MS.gene018852.t1 AT1G03840 32.192 146 89 4 82 226 55 191 1.86e-17 81.6
MS.gene018852.t1 AT5G60470 33.813 139 83 4 89 226 67 197 1.92e-17 81.6
MS.gene018852.t1 AT1G03840 32.192 146 89 4 82 226 57 193 2.09e-17 81.6
MS.gene018852.t1 AT5G60470 33.813 139 83 4 89 226 63 193 2.13e-17 81.6
MS.gene018852.t1 AT5G44160 33.813 139 82 4 89 226 60 189 2.97e-17 81.3
MS.gene018852.t1 AT5G44160 33.813 139 82 4 89 226 21 150 3.08e-17 80.9
MS.gene018852.t1 AT3G50700 33.333 141 84 4 87 226 55 186 3.43e-17 80.9
MS.gene018852.t1 AT4G02670 32.192 146 90 3 82 226 71 208 8.00e-17 79.7
MS.gene018852.t1 AT4G02670 32.192 146 90 3 82 226 69 206 9.16e-17 79.3
MS.gene018852.t1 AT3G13810 32.877 146 89 4 82 226 87 224 1.02e-16 79.7
MS.gene018852.t1 AT3G13810 33.333 147 87 5 82 226 86 223 1.12e-16 79.7
MS.gene018852.t1 AT3G13810 33.333 147 87 5 82 226 86 223 1.12e-16 79.7
MS.gene018852.t1 AT3G13810 33.333 147 87 5 82 226 81 218 1.30e-16 79.3
MS.gene018852.t1 AT3G13810 32.877 146 89 4 82 226 73 210 1.35e-16 79.3
MS.gene018852.t1 AT3G13810 32.877 146 89 4 82 226 67 204 1.58e-16 79.0
MS.gene018852.t1 AT1G68130 30.216 139 86 5 87 222 62 192 2.66e-12 66.6

Find 49 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCCTTCTCAGATTCTTAT+TGG 0.201568 1.2:+37481684 MS.gene018852:CDS
TGTGTACCTCTTAGAGATTC+TGG 0.222352 1.2:-37484030 None:intergenic
AAAGATCATATAAGAGCTTT+TGG 0.231134 1.2:+37484315 MS.gene018852:CDS
GGGAGTGGTCATGCTGCTTA+TGG 0.311784 1.2:+37484336 MS.gene018852:CDS
CACTTCAAACACATTATAAA+AGG 0.323447 1.2:+37484151 MS.gene018852:CDS
CATGTTGTTGTATCTGTTGA+AGG 0.332315 1.2:-37481742 None:intergenic
GTGACTGTTGCACTTCATAT+AGG 0.339638 1.2:+37481489 MS.gene018852:CDS
TGACTGTTGCACTTCATATA+GGG 0.360463 1.2:+37481490 MS.gene018852:CDS
TCTTTCAATGGCTTTGCTCT+TGG 0.361148 1.2:-37484120 None:intergenic
ACCCTTGTTAAGTGATCTAT+TGG 0.367615 1.2:-37481646 None:intergenic
ATTGTTGTTCACCAGGTTGC+AGG 0.377391 1.2:+37484082 MS.gene018852:CDS
CCTTGTTATTGTTGTTCACC+AGG 0.383239 1.2:+37484075 MS.gene018852:CDS
CATGCTGCTTATGGAATTGA+TGG 0.388035 1.2:+37484345 MS.gene018852:CDS
TAGTCATAAAGTAGAAGAAA+AGG 0.405108 1.2:+37481452 MS.gene018852:CDS
AAGCTTTGGTATTGTCTTTG+TGG 0.415419 1.2:+37484264 MS.gene018852:CDS
CTTATCCTCAGATGCATATG+TGG 0.432175 1.2:+37483980 MS.gene018852:intron
AGAAGAACTGTGGAAAGCTT+TGG 0.443136 1.2:+37484250 MS.gene018852:CDS
AGTGTTCTGAAATCTTTCAA+TGG 0.447098 1.2:-37484132 None:intergenic
ATCTTGCACTTTAATGGATG+TGG 0.454122 1.2:+37481422 None:intergenic
TCTTGTTCAACTTCAGAAGC+AGG 0.458660 1.2:-37484387 None:intergenic
CACTTAACAAGGGTCAGTAT+TGG 0.467580 1.2:+37481655 MS.gene018852:CDS
TATTAGCGACGATTCCTCTT+CGG 0.484816 1.2:+37481608 MS.gene018852:CDS
CTAAGAGGTACACAACCAAC+AGG 0.500045 1.2:+37484039 MS.gene018852:CDS
ATCTCAGAAGAACTAGGGCT+TGG 0.503709 1.2:-37481516 None:intergenic
AGCGACGATTCCTCTTCGGC+TGG 0.529279 1.2:+37481612 MS.gene018852:CDS
CAGATGCATATGTGGGGACA+TGG 0.531260 1.2:+37483988 MS.gene018852:intron
CATGGATCACAATACAGAAA+AGG 0.532079 1.2:+37484006 MS.gene018852:CDS
TATGTGTAGAAAATGTGGTA+AGG 0.535524 1.2:+37484194 MS.gene018852:CDS
TTATCCTCAGATGCATATGT+GGG 0.539918 1.2:+37483981 MS.gene018852:intron
GTTGCAATCTCAGAAGAACT+AGG 0.540111 1.2:-37481522 None:intergenic
ATAAGAATCTGAGAAGGAGT+AGG 0.541391 1.2:-37481681 None:intergenic
GAAGAAAAGGAAGATCATGA+AGG 0.566975 1.2:+37481465 MS.gene018852:CDS
TAAGAATCTGAGAAGGAGTA+GGG 0.573637 1.2:-37481680 None:intergenic
AAAGGACCAGAATCTCTAAG+AGG 0.574044 1.2:+37484024 MS.gene018852:CDS
CACATTATAAAAGGAAACAT+GGG 0.574183 1.2:+37484160 MS.gene018852:CDS
ACACATTATAAAAGGAAACA+TGG 0.579095 1.2:+37484159 MS.gene018852:CDS
CACAACCAACAGGTATGCTA+AGG 0.584031 1.2:+37484049 MS.gene018852:CDS
TTGCAATCTCAGAAGAACTA+GGG 0.593596 1.2:-37481521 None:intergenic
TCAATGTTGTTCCTGCAACC+TGG 0.607275 1.2:-37484093 None:intergenic
TACCAATAGATCACTTAACA+AGG 0.618619 1.2:+37481644 MS.gene018852:CDS
GGAAGCCTTAGCATACCTGT+TGG 0.624844 1.2:-37484054 None:intergenic
CCTGGTGAACAACAATAACA+AGG 0.629412 1.2:-37484075 None:intergenic
CAACAGATACAACAACATGC+AGG 0.634469 1.2:+37481746 MS.gene018852:CDS
GGACCAATAAGAATCTGAGA+AGG 0.643048 1.2:-37481687 None:intergenic
ACAGGACAAGAGAACTGTGT+AGG 0.644430 1.2:-37481708 None:intergenic
AGAACTCATGAGAAGAACTG+TGG 0.653790 1.2:+37484240 MS.gene018852:CDS
CCTTCACTACTGAGTCTGAG+TGG 0.658392 1.2:-37484418 None:intergenic
ACCAATAGATCACTTAACAA+GGG 0.699637 1.2:+37481645 MS.gene018852:CDS
TATCCTCAGATGCATATGTG+GGG 0.710095 1.2:+37483982 MS.gene018852:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTTACAATTAAATAGA+AGG - chr1.2:37483545-37483564 None:intergenic 10.0%
!! TATAAATTACATTAAATTTG+AGG + chr1.2:37482814-37482833 MS.gene018852:intron 10.0%
!! TTAATATATTATCATTTACT+TGG - chr1.2:37482532-37482551 None:intergenic 10.0%
!! TTCTATTTAATTGTAAATAA+TGG + chr1.2:37483544-37483563 MS.gene018852:intron 10.0%
!!! AAATAATGGTTTATATATTT+TGG + chr1.2:37483558-37483577 MS.gene018852:intron 10.0%
!!! ATAAGAAAAAATTATCTTTT+TGG + chr1.2:37482333-37482352 MS.gene018852:intron 10.0%
!!! TTATAAATTTCATTAATTTG+AGG + chr1.2:37482867-37482886 MS.gene018852:intron 10.0%
!! AAACAAAAACTATTAATTGT+TGG - chr1.2:37482558-37482577 None:intergenic 15.0%
!! TATAATGATTATTTAACTCA+AGG - chr1.2:37482929-37482948 None:intergenic 15.0%
!! TTTAATTAATTACACCAATA+TGG - chr1.2:37482271-37482290 None:intergenic 15.0%
!!! ATAATAACTTCTTCTTTTTA+AGG + chr1.2:37483924-37483943 MS.gene018852:intron 15.0%
!!! ATTATAAATTAACTTGAGAA+AGG + chr1.2:37483262-37483281 MS.gene018852:intron 15.0%
!!! GAAAACAAATTTAATTTCTT+GGG + chr1.2:37482099-37482118 MS.gene018852:intron 15.0%
!!! TGAAAACAAATTTAATTTCT+TGG + chr1.2:37482098-37482117 MS.gene018852:intron 15.0%
!!! TTATAAATTAACTTGAGAAA+GGG + chr1.2:37483263-37483282 MS.gene018852:intron 15.0%
!!! TTTTATGTGGATTAATAATT+AGG - chr1.2:37483710-37483729 None:intergenic 15.0%
!! AAGAAAAATTTCAAAAGAAG+AGG - chr1.2:37482189-37482208 None:intergenic 20.0%
!! ATATGAATTCAGTCTAAAAA+GGG - chr1.2:37482591-37482610 None:intergenic 20.0%
!! TATATGAATTCAGTCTAAAA+AGG - chr1.2:37482592-37482611 None:intergenic 20.0%
!! TGAAAAAACTCAAAAAATGT+TGG - chr1.2:37483833-37483852 None:intergenic 20.0%
!! TGGACACTAAATTAATATTA+AGG - chr1.2:37481853-37481872 None:intergenic 20.0%
!!! CATATCATTTTTGTTTTATG+TGG - chr1.2:37483723-37483742 None:intergenic 20.0%
!!! GTATTTTTTGCATGATAAAA+TGG + chr1.2:37482300-37482319 MS.gene018852:intron 20.0%
!!! TGATTTTCTTAAATTATCAG+CGG + chr1.2:37481988-37482007 MS.gene018852:intron 20.0%
!!! TTTTAACAAAAAATGGTGAA+GGG + chr1.2:37483232-37483251 MS.gene018852:intron 20.0%
!!! TTTTTAACAAAAAATGGTGA+AGG + chr1.2:37483231-37483250 MS.gene018852:intron 20.0%
! AAGTTCCACATATACATTAA+TGG + chr1.2:37482626-37482645 MS.gene018852:intron 25.0%
! ACACATTATAAAAGGAAACA+TGG + chr1.2:37484159-37484178 MS.gene018852:CDS 25.0%
! ATTCCTAATTAAAATCTTGG+CGG + chr1.2:37483744-37483763 MS.gene018852:intron 25.0%
! CACATTATAAAAGGAAACAT+GGG + chr1.2:37484160-37484179 MS.gene018852:CDS 25.0%
! CACTTCAAACACATTATAAA+AGG + chr1.2:37484151-37484170 MS.gene018852:CDS 25.0%
! CATATAAATGTCATGTCAAA+AGG + chr1.2:37483415-37483434 MS.gene018852:intron 25.0%
! CTATATATGATACAATTAGC+AGG - chr1.2:37482739-37482758 None:intergenic 25.0%
! GAAGAAAAATAGAAAGTGAA+CGG - chr1.2:37482212-37482231 None:intergenic 25.0%
! GATGTTTGACTAATTGTAAT+AGG + chr1.2:37482151-37482170 MS.gene018852:intron 25.0%
! GTAATAATCATCATTGATGA+AGG - chr1.2:37483771-37483790 None:intergenic 25.0%
! TAGTCATAAAGTAGAAGAAA+AGG + chr1.2:37481452-37481471 MS.gene018852:CDS 25.0%
! TATGTCCATTAATGTATATG+TGG - chr1.2:37482634-37482653 None:intergenic 25.0%
! TCTTTGTTCTTTAACCATAT+TGG + chr1.2:37482254-37482273 MS.gene018852:intron 25.0%
! TGCATTCCTAATTAAAATCT+TGG + chr1.2:37483741-37483760 MS.gene018852:intron 25.0%
!! AAAGATCATATAAGAGCTTT+TGG + chr1.2:37484315-37484334 MS.gene018852:CDS 25.0%
!! AAGATCATATAAGAGCTTTT+GGG + chr1.2:37484316-37484335 MS.gene018852:CDS 25.0%
!! TAATAGAACTGAATTTTGCA+GGG + chr1.2:37482491-37482510 MS.gene018852:intron 25.0%
!! TCAGATTCTATATATCCTTT+TGG + chr1.2:37482378-37482397 MS.gene018852:intron 25.0%
!! TTAATAGAACTGAATTTTGC+AGG + chr1.2:37482490-37482509 MS.gene018852:intron 25.0%
!!! TGTTTTCAGAAGTATGAATT+TGG - chr1.2:37482086-37482105 None:intergenic 25.0%
AAAACTCAAAAAATGTTGGC+TGG - chr1.2:37483829-37483848 None:intergenic 30.0%
AATGTATATGTGGAACTTTC+AGG - chr1.2:37482624-37482643 None:intergenic 30.0%
ACAATTAAATAGAAGGCAAG+CGG - chr1.2:37483538-37483557 None:intergenic 30.0%
ACCAATAGATCACTTAACAA+GGG + chr1.2:37481645-37481664 MS.gene018852:CDS 30.0%
AGAACAAAGAAAAATGACCT+TGG - chr1.2:37482244-37482263 None:intergenic 30.0%
AGACTTCAATGTTGTACTAA+AGG - chr1.2:37482436-37482455 None:intergenic 30.0%
AGGGAAATCATTATTAACAG+CGG + chr1.2:37483282-37483301 MS.gene018852:intron 30.0%
CATTTCACAATCAACTCAAT+GGG - chr1.2:37483200-37483219 None:intergenic 30.0%
GAACAAAGAAAAATGACCTT+GGG - chr1.2:37482243-37482262 None:intergenic 30.0%
GAGTTGTTTAATCAACCAAA+AGG - chr1.2:37482396-37482415 None:intergenic 30.0%
GTATGAATTTGGAAGAAAAG+TGG - chr1.2:37482075-37482094 None:intergenic 30.0%
TACCAATAGATCACTTAACA+AGG + chr1.2:37481644-37481663 MS.gene018852:CDS 30.0%
TATGTGTAGAAAATGTGGTA+AGG + chr1.2:37484194-37484213 MS.gene018852:CDS 30.0%
TCATTTCACAATCAACTCAA+TGG - chr1.2:37483201-37483220 None:intergenic 30.0%
TCTTAAATTATCAGCGGTAT+CGG + chr1.2:37481994-37482013 MS.gene018852:intron 30.0%
TTAAGGAGAAGAAGATCTAT+AGG - chr1.2:37481836-37481855 None:intergenic 30.0%
TTACAACTAAGTGATCTCTA+TGG + chr1.2:37483081-37483100 MS.gene018852:intron 30.0%
TTCCTAATTAAAATCTTGGC+GGG + chr1.2:37483745-37483764 MS.gene018852:intron 30.0%
TTTAGTGTATTCATATGCGT+CGG - chr1.2:37481963-37481982 None:intergenic 30.0%
TTTGGTTGATTAAACAACTC+AGG + chr1.2:37482396-37482415 MS.gene018852:intron 30.0%
! AGTTGCAAAATCAAGTTGTT+AGG + chr1.2:37483649-37483668 MS.gene018852:intron 30.0%
! CCACATTTTCTACACATAAA+AGG - chr1.2:37484192-37484211 None:intergenic 30.0%
! CCTTTTATGTGTAGAAAATG+TGG + chr1.2:37484189-37484208 MS.gene018852:CDS 30.0%
! GTTCTGATTTTAAGCATAAG+CGG + chr1.2:37484286-37484305 MS.gene018852:CDS 30.0%
! GTTGCAAAATCAAGTTGTTA+GGG + chr1.2:37483650-37483669 MS.gene018852:intron 30.0%
! TCATTAATTTGAGGTGCAAA+AGG + chr1.2:37482876-37482895 MS.gene018852:intron 30.0%
!! AGTGTTCTGAAATCTTTCAA+TGG - chr1.2:37484135-37484154 None:intergenic 30.0%
!!! AATTGATGGTTTTGAAGAAG+AGG + chr1.2:37484359-37484378 MS.gene018852:CDS 30.0%
!!! GTGCTAAGGTTTTGAAAAAA+AGG - chr1.2:37481810-37481829 None:intergenic 30.0%
AAAAATGACCTTGGGAAAAG+GGG - chr1.2:37482235-37482254 None:intergenic 35.0%
ACCCTTGTTAAGTGATCTAT+TGG - chr1.2:37481649-37481668 None:intergenic 35.0%
ACTCATCAACCTAATGATAG+TGG - chr1.2:37483057-37483076 None:intergenic 35.0%
ACTCCTTCTCAGATTCTTAT+TGG + chr1.2:37481684-37481703 MS.gene018852:CDS 35.0%
AGAAAAATGACCTTGGGAAA+AGG - chr1.2:37482237-37482256 None:intergenic 35.0%
AGTTCTATTAAGCAGTTGCA+TGG - chr1.2:37482481-37482500 None:intergenic 35.0%
AGTTGAATGAACCACAAACA+CGG - chr1.2:37482042-37482061 None:intergenic 35.0%
AGTTGCATGGCAAAATACAT+AGG - chr1.2:37482468-37482487 None:intergenic 35.0%
ATAAGAATCTGAGAAGGAGT+AGG - chr1.2:37481684-37481703 None:intergenic 35.0%
CAATTAAATAGAAGGCAAGC+GGG - chr1.2:37483537-37483556 None:intergenic 35.0%
CATGGATCACAATACAGAAA+AGG + chr1.2:37484006-37484025 MS.gene018852:CDS 35.0%
CATGTTGTTGTATCTGTTGA+AGG - chr1.2:37481745-37481764 None:intergenic 35.0%
CTCATCAACCTAATGATAGT+GGG - chr1.2:37483056-37483075 None:intergenic 35.0%
CTCTATGGAAATAGACAAGA+GGG + chr1.2:37483096-37483115 MS.gene018852:intron 35.0%
GAAAAATGACCTTGGGAAAA+GGG - chr1.2:37482236-37482255 None:intergenic 35.0%
GAAGAAAAGGAAGATCATGA+AGG + chr1.2:37481465-37481484 MS.gene018852:CDS 35.0%
GTAGCTCAATGGTATGAATT+TGG - chr1.2:37481873-37481892 None:intergenic 35.0%
TAAGAATCTGAGAAGGAGTA+GGG - chr1.2:37481683-37481702 None:intergenic 35.0%
TCAAGAGGGTTCAATATCTT+TGG + chr1.2:37483016-37483035 MS.gene018852:intron 35.0%
TCTCTATGGAAATAGACAAG+AGG + chr1.2:37483095-37483114 MS.gene018852:intron 35.0%
TGACTGTTGCACTTCATATA+GGG + chr1.2:37481490-37481509 MS.gene018852:CDS 35.0%
TTATCCTCAGATGCATATGT+GGG + chr1.2:37483981-37484000 MS.gene018852:intron 35.0%
TTGCAATCTCAGAAGAACTA+GGG - chr1.2:37481524-37481543 None:intergenic 35.0%
! AAGCTTTGGTATTGTCTTTG+TGG + chr1.2:37484264-37484283 MS.gene018852:CDS 35.0%
! ATATGTGGAACTTTCAGGTA+TGG - chr1.2:37482619-37482638 None:intergenic 35.0%
! ATTTTGCAACTTCAAGTGAG+GGG - chr1.2:37483640-37483659 None:intergenic 35.0%
! GATTTTGCAACTTCAAGTGA+GGG - chr1.2:37483641-37483660 None:intergenic 35.0%
! TGATTTTGCAACTTCAAGTG+AGG - chr1.2:37483642-37483661 None:intergenic 35.0%
! TTGAAGGTTTTACAGCAAAC+AGG - chr1.2:37481729-37481748 None:intergenic 35.0%
!! TTGTAAGAGTTTTGTCCATG+AGG - chr1.2:37483687-37483706 None:intergenic 35.0%
!!! ATTGGTTTTGTCATCCGAAA+AGG + chr1.2:37483491-37483510 MS.gene018852:intron 35.0%
AAAATGACCTTGGGAAAAGG+GGG - chr1.2:37482234-37482253 None:intergenic 40.0%
AAAGGACCAGAATCTCTAAG+AGG + chr1.2:37484024-37484043 MS.gene018852:CDS 40.0%
AATGTTGTGTTCACGAGGAT+TGG + chr1.2:37483473-37483492 MS.gene018852:intron 40.0%
AGAACTCATGAGAAGAACTG+TGG + chr1.2:37484240-37484259 MS.gene018852:CDS 40.0%
AGAAGAACTGTGGAAAGCTT+TGG + chr1.2:37484250-37484269 MS.gene018852:CDS 40.0%
CAACAGATACAACAACATGC+AGG + chr1.2:37481746-37481765 MS.gene018852:CDS 40.0%
CACTTAACAAGGGTCAGTAT+TGG + chr1.2:37481655-37481674 MS.gene018852:CDS 40.0%
CCTGGTGAACAACAATAACA+AGG - chr1.2:37484078-37484097 None:intergenic 40.0%
CTTATCCTCAGATGCATATG+TGG + chr1.2:37483980-37483999 MS.gene018852:intron 40.0%
GACAATGAGACACTTCAAGA+GGG + chr1.2:37483002-37483021 MS.gene018852:intron 40.0%
GAGGGGTTCAAATTTCATGT+AGG - chr1.2:37483623-37483642 None:intergenic 40.0%
GGACCAATAAGAATCTGAGA+AGG - chr1.2:37481690-37481709 None:intergenic 40.0%
GGAGAAGAAGATCTATAGGT+TGG - chr1.2:37481832-37481851 None:intergenic 40.0%
GTCTCAAACCCACTATCATT+AGG + chr1.2:37483045-37483064 MS.gene018852:intron 40.0%
GTGACTGTTGCACTTCATAT+AGG + chr1.2:37481489-37481508 MS.gene018852:CDS 40.0%
GTTGCAATCTCAGAAGAACT+AGG - chr1.2:37481525-37481544 None:intergenic 40.0%
TATCCTCAGATGCATATGTG+GGG + chr1.2:37483982-37484001 MS.gene018852:intron 40.0%
TATTAGCGACGATTCCTCTT+CGG + chr1.2:37481608-37481627 MS.gene018852:CDS 40.0%
TCTACGCAGCAATTCTTCTT+TGG - chr1.2:37482979-37482998 None:intergenic 40.0%
TCTTGTTCAACTTCAGAAGC+AGG - chr1.2:37484390-37484409 None:intergenic 40.0%
TGACAATGAGACACTTCAAG+AGG + chr1.2:37483001-37483020 MS.gene018852:intron 40.0%
TGTGTACCTCTTAGAGATTC+TGG - chr1.2:37484033-37484052 None:intergenic 40.0%
! CATGCTGCTTATGGAATTGA+TGG + chr1.2:37484345-37484364 MS.gene018852:CDS 40.0%
! TCTTTCAATGGCTTTGCTCT+TGG - chr1.2:37484123-37484142 None:intergenic 40.0%
! TTTGCAAAGGTGTAGCTCAA+TGG - chr1.2:37481884-37481903 None:intergenic 40.0%
!! AGATCTATAGGTTGGTGCTA+AGG - chr1.2:37481824-37481843 None:intergenic 40.0%
!! ATGATAGTGGGTTTGAGACT+TGG - chr1.2:37483044-37483063 None:intergenic 40.0%
!! CATATAAGAGCTTTTGGGAG+TGG + chr1.2:37484321-37484340 MS.gene018852:CDS 40.0%
!! CCTTGTTATTGTTGTTCACC+AGG + chr1.2:37484075-37484094 MS.gene018852:CDS 40.0%
!!! CTTTTGCTGTTAGAGGAGAT+TGG + chr1.2:37484217-37484236 MS.gene018852:CDS 40.0%
ACAGGACAAGAGAACTGTGT+AGG - chr1.2:37481711-37481730 None:intergenic 45.0%
ACTCAAAAATCCAGCCGAAG+AGG - chr1.2:37481625-37481644 None:intergenic 45.0%
AGGGATGAATTGACACCTCA+TGG + chr1.2:37483669-37483688 MS.gene018852:intron 45.0%
ATCTCAGAAGAACTAGGGCT+TGG - chr1.2:37481519-37481538 None:intergenic 45.0%
CACAACCAACAGGTATGCTA+AGG + chr1.2:37484049-37484068 MS.gene018852:CDS 45.0%
CCACAAACACGGACATAACA+TGG - chr1.2:37482031-37482050 None:intergenic 45.0%
CCATGAATGTTGTGTTCACG+AGG + chr1.2:37483468-37483487 MS.gene018852:intron 45.0%
CCATGTTATGTCCGTGTTTG+TGG + chr1.2:37482028-37482047 MS.gene018852:intron 45.0%
CCTCGTGAACACAACATTCA+TGG - chr1.2:37483471-37483490 None:intergenic 45.0%
TCAATGTTGTTCCTGCAACC+TGG - chr1.2:37484096-37484115 None:intergenic 45.0%
! ATTGTTGTTCACCAGGTTGC+AGG + chr1.2:37484082-37484101 MS.gene018852:CDS 45.0%
! CATAGGAGGAGGTTTTGCAA+AGG - chr1.2:37481897-37481916 None:intergenic 45.0%
! CTAAGAGGTACACAACCAAC+AGG + chr1.2:37484039-37484058 MS.gene018852:CDS 45.0%
! GTGGAACTTTCAGGTATGGA+AGG - chr1.2:37482615-37482634 None:intergenic 45.0%
! TTTTCTTCCCCCTTTTCCCA+AGG + chr1.2:37482224-37482243 MS.gene018852:intron 45.0%
!!! GGCCCGCCAAGATTTTAATT+AGG - chr1.2:37483750-37483769 None:intergenic 45.0%
!!! GGTAAGGCTTTTGCTGTTAG+AGG + chr1.2:37484210-37484229 MS.gene018852:CDS 45.0%
!!! ATAATTTTTTTAACAAAAAA+TGG + chr1.2:37483225-37483244 MS.gene018852:intron 5.0%
!!! TAATAATGTAATTTTTAAAA+GGG + chr1.2:37483311-37483330 MS.gene018852:intron 5.0%
!!! TTAATAATGTAATTTTTAAA+AGG + chr1.2:37483310-37483329 MS.gene018852:intron 5.0%
AAACCTCCTCCTATGAAGCG+CGG + chr1.2:37481902-37481921 MS.gene018852:intron 50.0%
CAGATGCATATGTGGGGACA+TGG + chr1.2:37483988-37484007 MS.gene018852:intron 50.0%
GGAAGCCTTAGCATACCTGT+TGG - chr1.2:37484057-37484076 None:intergenic 50.0%
TATGAAGCGCGGACACTCAT+CGG + chr1.2:37481913-37481932 MS.gene018852:intron 50.0%
TGTCCCCACATATGCATCTG+AGG - chr1.2:37483988-37484007 None:intergenic 50.0%
! GCTGCGTCGTTAGACCTTTT+CGG - chr1.2:37483508-37483527 None:intergenic 50.0%
GATGAGTGTCCGCGCTTCAT+AGG - chr1.2:37481914-37481933 None:intergenic 55.0%
! GGGAGTGGTCATGCTGCTTA+TGG + chr1.2:37484336-37484355 MS.gene018852:CDS 55.0%
AGCGACGATTCCTCTTCGGC+TGG + chr1.2:37481612-37481631 MS.gene018852:CDS 60.0%
GAGTGTCCGCGCTTCATAGG+AGG - chr1.2:37481911-37481930 None:intergenic 60.0%
TGTCCGCGCTTCATAGGAGG+AGG - chr1.2:37481908-37481927 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 37481435 37484434 37481435 ID=MS.gene018852
chr1.2 mRNA 37481435 37484434 37481435 ID=MS.gene018852.t1;Parent=MS.gene018852
chr1.2 exon 37481435 37481767 37481435 ID=MS.gene018852.t1.exon1;Parent=MS.gene018852.t1
chr1.2 CDS 37481435 37481767 37481435 ID=cds.MS.gene018852.t1;Parent=MS.gene018852.t1
chr1.2 exon 37483991 37484434 37483991 ID=MS.gene018852.t1.exon2;Parent=MS.gene018852.t1
chr1.2 CDS 37483991 37484434 37483991 ID=cds.MS.gene018852.t1;Parent=MS.gene018852.t1
Gene Sequence

>MS.gene018852

ATGGATGTGGATGATTGTAGTCATAAAGTAGAAGAAAAGGAAGATCATGAAGGTGTGACTGTTGCACTTCATATAGGGTTACCAAGCCCTAGTTCTTCTGAGATTGCAACTATGATGATGTCTTCTTCTTCTGAGATGATGATTAATGAACAAGATCTCTTACAAGACGTTACTATTAGCGACGATTCCTCTTCGGCTGGATTTTTGAGTACCAATAGATCACTTAACAAGGGTCAGTATTGGATCCCTACTCCTTCTCAGATTCTTATTGGTCCTACACAGTTCTCTTGTCCTGTTTGCTGTAAAACCTTCAACAGATACAACAACATGCAGGTTAGTAATTCGTCTACATCTTCAAGATCTTCTTCTTCTCCTTTTTTTCAAAACCTTAGCACCAACCTATAGATCTTCTTCTCCTTAATATTAATTTAGTGTCCAAATTCATACCATTGAGCTACACCTTTGCAAAACCTCCTCCTATGAAGCGCGGACACTCATCGGATTTAGCGTGTCTCAGTGTCGTCACCGACGCATATGAATACACTAAATTATGTGATTTTCTTAAATTATCAGCGGTATCGGCATATCAGTGTCCATGTTATGTCCGTGTTTGTGGTTCATTCAACTTTTATATCTTCCACTTTTCTTCCAAATTCATACTTCTGAAAACAAATTTAATTTCTTGGGTTCTGATGTAGTAATTCTTTCTTGATTCTGATGTTTGACTAATTGTAATAGGAAAACATACTGTCCTCTTCTTTTGAAATTTTTCTTCCGTTCACTTTCTATTTTTCTTCCCCCTTTTCCCAAGGTCATTTTTCTTTGTTCTTTAACCATATTGGTGTAATTAATTAAAAATATTTTTGTATTTTTTGCATGATAAAATGGATAATATATTATAAGAAAAAATTATCTTTTTGGCTGATTGAAACTGTGAGTGAGATCAGATTCTATATATCCTTTTGGTTGATTAAACAACTCAGGTAATGTTCTTTATGCCTTTAGTACAACATTGAAGTCTGTGCTTTTTCCTATGTATTTTGCCATGCAACTGCTTAATAGAACTGAATTTTGCAGGGTTTTCTTCTAGATCTCCAAGTAAATGATAATATATTAATGACCAACAATTAATAGTTTTTGTTTCTCTTTGTCACCCTTTTTAGACTGAATTCATATACCTTCCATACCTGAAAGTTCCACATATACATTAATGGACATATAGCTATTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGCCTGCTAATTGTATCATATATAGTACTTCAAAGAATTTATCAAACAATGAGTACATTACTATATATATCTAGTTTAGTTATAAATTACATTAAATTTGAGGCACAAAAAGTGTTTGCTTTTCATGATTTCATTATAAATTTCATTAATTTGAGGTGCAAAAGGTGTTTTCTCTTCATGATTTCATTATATCCTTGAGTTAAATAATCATTATATTATTTATGAGTATAATGTTACAACATCCAAAGAAGAATTGCTGCGTAGAAGTGACAATGAGACACTTCAAGAGGGTTCAATATCTTTGGTGCCAAGTCTCAAACCCACTATCATTAGGTTGATGAGTTAACTTACAACTAAGTGATCTCTATGGAAATAGACAAGAGGGTTCAATATATGTAACTACTAATATAACAAATGAATTACTAACAATTAAATTAATGTTGAGAGACAATTATTGTTTAAGCCCATTGAGTTGATTGTGAAATGAAAATATAATTTTTTTAACAAAAAATGGTGAAGGGACAAATTATTATAAATTAACTTGAGAAAGGGAAATCATTATTAACAGCGGATACGTTAATAATGTAATTTTTAAAAGGGTTTTTCTATCATGTGCAAATTTTCTCAAGTTAAGATCTTTAAAATAGAAATTTTGTATTGAAACTTGTACATTTAATATAACATATAAATGTCATGTCAAAAGGTTATGCATAACAATGTCATGTCTTCTAGATCCATGAATGTTGTGTTCACGAGGATTGGTTTTGTCATCCGAAAAGGTCTAACGACGCAGCTTGCTGCCCGCTTGCCTTCTATTTAATTGTAAATAATGGTTTATATATTTTGGTTTCATAAAATTTTTGAATAAATAATTGTTTTGAAATGTCCTACATGAAATTTGAACCCCTCACTTGAAGTTGCAAAATCAAGTTGTTAGGGATGAATTGACACCTCATGGACAAAACTCTTACAACCTAATTATTAATCCACATAAAACAAAAATGATATGCATTCCTAATTAAAATCTTGGCGGGCCTTCATCAATGATGATTATTACTAAGATGATAACATCACAAAACAAAGTGAGCTAGTCCAGCCAACATTTTTTGAGTTTTTTCATATAAATTTTAGACTTTCATACTATGCACACAACTTTTAATGATTATTTTCTCTTGATTAATTACTTTATCATAATAACTTCTTCTTTTTAAGGTAATTATATATGCAAAAATTTAATTTCTTCTTTCTTATCCTCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGTACACAACCAACAGGTATGCTAAGGCTTCCTTGTTATTGTTGTTCACCAGGTTGCAGGAACAACATTGATCATCCAAGAGCAAAGCCATTGAAAGATTTCAGAACACTTCAAACACATTATAAAAGGAAACATGGGATTAAGCCTTTTATGTGTAGAAAATGTGGTAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAACTGTGGAAAGCTTTGGTATTGTCTTTGTGGTTCTGATTTTAAGCATAAGCGGTCGCTTAAAGATCATATAAGAGCTTTTGGGAGTGGTCATGCTGCTTATGGAATTGATGGTTTTGAAGAAGAGGATGAACCTGCTTCTGAAGTTGAACAAGATAATGAATCCACTCAGACTCAGTAG
Protein sequence

>MS.gene018852.t1

MDVDDCSHKVEEKEDHEGVTVALHIGLPSPSSSEIATMMMSSSSEMMINEQDLLQDVTISDDSSSAGFLSTNRSLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGIDGFEEEDEPASEVEQDNESTQTQ