AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018880.t1 MTR_0100s0160 98.252 286 5 0 1 286 1 286 0.0 585
MS.gene018880.t1 MTR_7g091810 64.808 287 80 2 1 285 1 268 1.22e-128 367
MS.gene018880.t1 MTR_6g008210 49.640 139 63 2 2 137 5 139 2.11e-38 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018880.t1 AT2G41835 62.369 287 98 3 1 286 1 278 9.66e-128 365
MS.gene018880.t1 AT3G57480 52.962 287 97 2 1 287 1 249 3.14e-106 309
MS.gene018880.t1 AT3G57480 52.962 287 97 2 1 287 1 249 3.14e-106 309
MS.gene018880.t1 AT3G28210 41.622 185 78 4 2 183 5 162 2.69e-38 133
MS.gene018880.t1 AT3G28210 41.622 185 78 4 2 183 5 162 2.69e-38 133
MS.gene018880.t1 AT5G48205 39.610 154 34 4 1 151 1 98 5.66e-25 99.0

Find 64 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTAGATCTGGAAATTC+TGG 0.237504 1.2:+36674049 None:intergenic
CTATTCATTAGATTCATAAA+AGG 0.242926 1.2:+36672487 None:intergenic
CAACCTCCTCTTCATCTAAA+TGG 0.298522 1.2:-36672429 MS.gene018880:CDS
TGATTCTCCCATGTTATGTT+TGG 0.324605 1.2:+36672706 None:intergenic
GTAACTTTCTCATAATTTGA+TGG 0.361749 1.2:+36672664 None:intergenic
CGCTTCTAATATTCGAGCTT+CGG 0.377494 1.2:-36672386 MS.gene018880:CDS
ATCTCTTTGCATCCAGCTGC+AGG 0.399699 1.2:+36672625 None:intergenic
GGTCCTGGACATTTGTGATC+AGG 0.415571 1.2:+36672532 None:intergenic
ATATGTCCACTTTGCGCTAA+AGG 0.436581 1.2:-36672754 MS.gene018880:CDS
TTGGATCTTGCTCAGGAACT+AGG 0.441768 1.2:+36672725 None:intergenic
CACTTGCGATCGCTGCTACC+AGG 0.446006 1.2:-36673981 MS.gene018880:intron
TATTCATTAGATTCATAAAA+GGG 0.454261 1.2:+36672488 None:intergenic
ATTCGAGCTTCGGCTGAGGC+TGG 0.454635 1.2:-36672376 MS.gene018880:CDS
GTTATGTTTGGATCTTGCTC+AGG 0.458286 1.2:+36672718 None:intergenic
TAGACCATTGTTTGAAGCAT+AGG 0.461011 1.2:-36672561 MS.gene018880:CDS
AGTAGTGATCGAGGAAAACT+TGG 0.461509 1.2:+36672246 None:intergenic
AGAGGAGGTTGAACTTGAGT+TGG 0.472577 1.2:+36672441 None:intergenic
ACTCCAGAATTTCCAGATCT+AGG 0.478228 1.2:-36674052 MS.gene018880:CDS
TAACTTTCTCATAATTTGAT+GGG 0.483060 1.2:+36672665 None:intergenic
CATTGTTTGAAGCATAGGTT+TGG 0.498039 1.2:-36672556 MS.gene018880:CDS
AAAACTTGGCACCGCATTGA+GGG 0.499599 1.2:+36672260 None:intergenic
TGTAGTCCATTTAGATGAAG+AGG 0.514775 1.2:+36672423 None:intergenic
GAAATCAACGAGCTTGCAAT+CGG 0.515709 1.2:+36674012 None:intergenic
AGGTGTATTGTTTGGAACAC+CGG 0.516965 1.2:-36672831 MS.gene018880:CDS
CTCAAACACAATTAAATGCA+AGG 0.517875 1.2:-36672593 MS.gene018880:CDS
CACAGATCCCGTGTCCCTTG+TGG 0.520415 1.2:-36672128 MS.gene018880:CDS
GCGTGTCCTAAGTGTAGTAA+AGG 0.526636 1.2:-36672154 MS.gene018880:CDS
CCCTCTCAACATGCTCCACA+AGG 0.529390 1.2:+36672113 None:intergenic
GTGAATCCTTTACTACACTT+AGG 0.538962 1.2:+36672148 None:intergenic
ACACTTAGGACACGCATCAA+TGG 0.539521 1.2:+36672162 None:intergenic
GGTCCTGATCACAAATGTCC+AGG 0.548572 1.2:-36672535 MS.gene018880:CDS
GAAAACTTGGCACCGCATTG+AGG 0.550498 1.2:+36672259 None:intergenic
AGCAAGATCCAAACATAACA+TGG 0.557990 1.2:-36672714 MS.gene018880:CDS
TAATATTCGAGCTTCGGCTG+AGG 0.559139 1.2:-36672380 MS.gene018880:CDS
GTGGTGAAATTAACCAAGCA+TGG 0.560055 1.2:-36672339 MS.gene018880:CDS
TGGTGAAATTAACCAAGCAT+GGG 0.560973 1.2:-36672338 MS.gene018880:CDS
GGGAGAAAGAGCAACGGCAG+TGG 0.567326 1.2:-36672298 MS.gene018880:CDS
CAAACCTATGCTTCAAACAA+TGG 0.573057 1.2:+36672557 None:intergenic
AACATGCTCCACAAGGGACA+CGG 0.573079 1.2:+36672120 None:intergenic
GAGCAACGGCAGTGGTCAAG+TGG 0.573351 1.2:-36672290 MS.gene018880:CDS
TAGCAGCGATCGCAAGTGAA+AGG 0.598354 1.2:+36673986 None:intergenic
ACATGCTCCACAAGGGACAC+GGG 0.604172 1.2:+36672121 None:intergenic
TGGTAACATTCGCAACAGAT+CGG 0.605303 1.2:+36672182 None:intergenic
CGGACTCCTTTAGCGCAAAG+TGG 0.607339 1.2:+36672748 None:intergenic
ACCGATGTTTGATATAACTC+CGG 0.608595 1.2:+36672812 None:intergenic
ATAATTTGATGGGTCGCAGT+CGG 0.619214 1.2:+36672675 None:intergenic
AGTCCATTTAGATGAAGAGG+AGG 0.622955 1.2:+36672426 None:intergenic
TCTCTTTGCATCCAGCTGCA+GGG 0.624481 1.2:+36672626 None:intergenic
GAGCATGTTGAGAGGGAACA+TGG 0.625868 1.2:-36672106 MS.gene018880:CDS
CCCTTGTGGAGCATGTTGAG+AGG 0.626858 1.2:-36672114 MS.gene018880:CDS
ATCGATTAAAGTAGTGATCG+AGG 0.631399 1.2:+36672237 None:intergenic
CGAAGCTCGAATATTAGAAG+CGG 0.637300 1.2:+36672387 None:intergenic
CCTTGTGGAGCATGTTGAGA+GGG 0.637426 1.2:-36672113 MS.gene018880:CDS
GCAAGATCCAAACATAACAT+GGG 0.676319 1.2:-36672713 MS.gene018880:CDS
TGGTGGCACTTCTAGAACGT+AGG 0.679977 1.2:-36672086 None:intergenic
GGTGAAATTAACCAAGCATG+GGG 0.687152 1.2:-36672337 MS.gene018880:CDS
ACCGGAGTTATATCAAACAT+CGG 0.687208 1.2:-36672813 MS.gene018880:CDS
CCTCTCAACATGCTCCACAA+GGG 0.702395 1.2:+36672114 None:intergenic
AATGGTGGGAGAAAGAGCAA+CGG 0.715605 1.2:-36672304 MS.gene018880:CDS
GATCTTGCTCAGGAACTAGG+CGG 0.720155 1.2:+36672728 None:intergenic
GCTGGAATGTCAAAGTTGAG+TGG 0.723894 1.2:-36672358 MS.gene018880:CDS
GTGAAATTAACCAAGCATGG+GGG 0.745364 1.2:-36672336 MS.gene018880:CDS
GTGGAGCAATGCCCTCAATG+CGG 0.747142 1.2:-36672271 MS.gene018880:CDS
CATGTTGAGAGGGAACATGG+TGG 0.749762 1.2:-36672103 MS.gene018880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATTAGATTCATAAAA+GGG + chr1.2:36673660-36673679 None:intergenic 15.0%
!!! AATCATATAAGCTATTTTTT+GGG + chr1.2:36672449-36672468 None:intergenic 15.0%
!!! ACATTGTATTTTTATTTTTG+AGG - chr1.2:36673123-36673142 MS.gene018880:intron 15.0%
!!! TAATCATATAAGCTATTTTT+TGG + chr1.2:36672450-36672469 None:intergenic 15.0%
!!! TGATGATATTTTTATTTTGT+GGG + chr1.2:36672854-36672873 None:intergenic 15.0%
!!! TTGATGATATTTTTATTTTG+TGG + chr1.2:36672855-36672874 None:intergenic 15.0%
!! AAACCCTAATAATAAAATCT+AGG + chr1.2:36672322-36672341 None:intergenic 20.0%
!! AAATTATTAAGAATGCATAG+TGG + chr1.2:36672268-36672287 None:intergenic 20.0%
!! AAGAAAAAGAAAAGAGAAAT+TGG + chr1.2:36672200-36672219 None:intergenic 20.0%
!! AATTATTAAGAATGCATAGT+GGG + chr1.2:36672267-36672286 None:intergenic 20.0%
!! CTATTCATTAGATTCATAAA+AGG + chr1.2:36673661-36673680 None:intergenic 20.0%
!! TAACTTTCTCATAATTTGAT+GGG + chr1.2:36673483-36673502 None:intergenic 20.0%
!!! AAATTTGTTTCCACTTTTTT+AGG + chr1.2:36673637-36673656 None:intergenic 20.0%
!!! AGATTTTATTATTAGGGTTT+TGG - chr1.2:36672322-36672341 MS.gene018880:CDS 20.0%
!!! AGTTTTATTATAGCCTTTAT+AGG - chr1.2:36672737-36672756 MS.gene018880:CDS 20.0%
!!! ATCATATAAGCTATTTTTTG+GGG + chr1.2:36672448-36672467 None:intergenic 20.0%
!!! CTTTTATGAATCTAATGAAT+AGG - chr1.2:36673659-36673678 MS.gene018880:intron 20.0%
!!! GATTTTATTATTAGGGTTTT+GGG - chr1.2:36672323-36672342 MS.gene018880:CDS 20.0%
! AAACTATCATGTGAACAAAT+TGG - chr1.2:36672873-36672892 MS.gene018880:intron 25.0%
! AATGAATAGGAGTAGAAAAA+AGG - chr1.2:36673672-36673691 MS.gene018880:intron 25.0%
! ACCAAAAATGAAAATCGTTT+AGG + chr1.2:36673093-36673112 None:intergenic 25.0%
! CAAACGGTTTATCAAAATTA+CGG - chr1.2:36672988-36673007 MS.gene018880:intron 25.0%
! GTAACTTTCTCATAATTTGA+TGG + chr1.2:36673484-36673503 None:intergenic 25.0%
! TAATTAATACAAACTAGCGA+AGG - chr1.2:36672677-36672696 MS.gene018880:CDS 25.0%
! TATTATAGCCTTTATAGGAT+AGG - chr1.2:36672742-36672761 MS.gene018880:CDS 25.0%
! TTAAGTGCTTAGTCTATATT+AGG - chr1.2:36672467-36672486 MS.gene018880:CDS 25.0%
! TTAATTAAACAGAAACAACG+TGG + chr1.2:36672241-36672260 None:intergenic 25.0%
! TTTATTCGATAAGCTGTTAT+AGG + chr1.2:36672622-36672641 None:intergenic 25.0%
!! TCCTAAACGATTTTCATTTT+TGG - chr1.2:36673089-36673108 MS.gene018880:intron 25.0%
!! TGGCCTAGATTTTATTATTA+GGG - chr1.2:36672316-36672335 MS.gene018880:CDS 25.0%
!! TTGGCCTAGATTTTATTATT+AGG - chr1.2:36672315-36672334 MS.gene018880:CDS 25.0%
!!! ATTTTGTTTGATGACATTCT+TGG - chr1.2:36673195-36673214 MS.gene018880:intron 25.0%
!!! CATCTAATTGAAAGTACTTT+TGG - chr1.2:36672296-36672315 MS.gene018880:CDS 25.0%
!!! CTTTATTTGGATTTTATCTC+AGG - chr1.2:36672386-36672405 MS.gene018880:CDS 25.0%
!!! TATAACTTGTTGCTTTGAAT+TGG - chr1.2:36672542-36672561 MS.gene018880:CDS 25.0%
!!! TTTTGTTTGATGACATTCTT+GGG - chr1.2:36673196-36673215 MS.gene018880:intron 25.0%
AAATCGAAACTACCGTTAAA+TGG + chr1.2:36672359-36672378 None:intergenic 30.0%
ATTACGGTATTGCAGAAAAT+AGG - chr1.2:36673004-36673023 MS.gene018880:intron 30.0%
CAAAAAGTTCATGAAAGAAG+TGG - chr1.2:36673937-36673956 MS.gene018880:intron 30.0%
CCAAACAATACACCTAAAAT+GGG + chr1.2:36673309-36673328 None:intergenic 30.0%
CTCAAACACAATTAAATGCA+AGG - chr1.2:36673552-36673571 MS.gene018880:intron 30.0%
TATAGCTTTCTCAAAAGTCA+CGG + chr1.2:36672526-36672545 None:intergenic 30.0%
TATCATGTGAACAAATTGGA+AGG - chr1.2:36672877-36672896 MS.gene018880:intron 30.0%
TCCAAACAATACACCTAAAA+TGG + chr1.2:36673310-36673329 None:intergenic 30.0%
TTACGGTATTGCAGAAAATA+GGG - chr1.2:36673005-36673024 MS.gene018880:intron 30.0%
! CGATTTTCGAAGACTTTATT+TGG - chr1.2:36672373-36672392 MS.gene018880:CDS 30.0%
! TGCATGAACTTTAGAAGTTA+AGG + chr1.2:36673153-36673172 None:intergenic 30.0%
!!! TTATTAGGGTTTTGGGTTTA+CGG - chr1.2:36672330-36672349 MS.gene018880:CDS 30.0%
AATAAACGCGAAGCTTCAAT+TGG + chr1.2:36672810-36672829 None:intergenic 35.0%
ACCGATGTTTGATATAACTC+CGG + chr1.2:36673336-36673355 None:intergenic 35.0%
ACCGGAGTTATATCAAACAT+CGG - chr1.2:36673332-36673351 MS.gene018880:intron 35.0%
AGCAAGATCCAAACATAACA+TGG - chr1.2:36673431-36673450 MS.gene018880:intron 35.0%
ATCGATTAAAGTAGTGATCG+AGG + chr1.2:36673911-36673930 None:intergenic 35.0%
CAAAAAACAAACAGGCTCTT+AGG - chr1.2:36672589-36672608 MS.gene018880:CDS 35.0%
CAAACCTATGCTTCAAACAA+TGG + chr1.2:36673591-36673610 None:intergenic 35.0%
GCAAGATCCAAACATAACAT+GGG - chr1.2:36673432-36673451 MS.gene018880:intron 35.0%
GGTTTACGGTATCCATTTAA+CGG - chr1.2:36672344-36672363 MS.gene018880:CDS 35.0%
GTGAATCCTTTACTACACTT+AGG + chr1.2:36674000-36674019 None:intergenic 35.0%
TAGCCTTTATAGGATAGGAT+AGG - chr1.2:36672747-36672766 MS.gene018880:CDS 35.0%
TATAACACTGCAGAGTCAAA+CGG - chr1.2:36672972-36672991 MS.gene018880:intron 35.0%
TCTCCTATCCTATCCTATAA+AGG + chr1.2:36672753-36672772 None:intergenic 35.0%
TGATTCTCCCATGTTATGTT+TGG + chr1.2:36673442-36673461 None:intergenic 35.0%
TGGTGAAATTAACCAAGCAT+GGG - chr1.2:36673807-36673826 MS.gene018880:intron 35.0%
TGTAGTCCATTTAGATGAAG+AGG + chr1.2:36673725-36673744 None:intergenic 35.0%
TTTCCTAGATCTGGAAATTC+TGG + chr1.2:36672099-36672118 None:intergenic 35.0%
! CAATACACCTAAAATGGGTT+TGG + chr1.2:36673304-36673323 None:intergenic 35.0%
! CATTGTTTGAAGCATAGGTT+TGG - chr1.2:36673589-36673608 MS.gene018880:intron 35.0%
! GTATAAGCCAAACCCATTTT+AGG - chr1.2:36673294-36673313 MS.gene018880:intron 35.0%
! TAGACCATTGTTTGAAGCAT+AGG - chr1.2:36673584-36673603 MS.gene018880:intron 35.0%
!! CCCATTTTAGGTGTATTGTT+TGG - chr1.2:36673306-36673325 MS.gene018880:intron 35.0%
!!! AGCCTGTTTGTTTTTTGAGT+GGG + chr1.2:36672586-36672605 None:intergenic 35.0%
AACTAGCGAAGGATGAGAAT+TGG - chr1.2:36672688-36672707 MS.gene018880:CDS 40.0%
ACTCCAGAATTTCCAGATCT+AGG - chr1.2:36672093-36672112 MS.gene018880:CDS 40.0%
AGTAGTGATCGAGGAAAACT+TGG + chr1.2:36673902-36673921 None:intergenic 40.0%
AGTCCATTTAGATGAAGAGG+AGG + chr1.2:36673722-36673741 None:intergenic 40.0%
ATACCACTTCCAATGCAAGT+TGG - chr1.2:36672500-36672519 MS.gene018880:CDS 40.0%
ATATGTCCACTTTGCGCTAA+AGG - chr1.2:36673391-36673410 MS.gene018880:intron 40.0%
ATGTCCAGGACCTAAAAAAG+TGG - chr1.2:36673624-36673643 MS.gene018880:intron 40.0%
CAACCTCCTCTTCATCTAAA+TGG - chr1.2:36673716-36673735 MS.gene018880:intron 40.0%
CACCCACTCAAAAAACAAAC+AGG - chr1.2:36672581-36672600 MS.gene018880:CDS 40.0%
CGAAGCTCGAATATTAGAAG+CGG + chr1.2:36673761-36673780 None:intergenic 40.0%
CGCTTCTAATATTCGAGCTT+CGG - chr1.2:36673759-36673778 MS.gene018880:intron 40.0%
CGTGGACACATAAAAGTTGA+AGG + chr1.2:36672223-36672242 None:intergenic 40.0%
GAAATCAACGAGCTTGCAAT+CGG + chr1.2:36672136-36672155 None:intergenic 40.0%
GAAATTGGTTAGTACGAACC+TGG + chr1.2:36672185-36672204 None:intergenic 40.0%
GGTGAAATTAACCAAGCATG+GGG - chr1.2:36673808-36673827 MS.gene018880:intron 40.0%
GTCGCAGATCAAGAAAATAG+AGG - chr1.2:36672914-36672933 MS.gene018880:intron 40.0%
GTGAAATTAACCAAGCATGG+GGG - chr1.2:36673809-36673828 MS.gene018880:intron 40.0%
GTGGTGAAATTAACCAAGCA+TGG - chr1.2:36673806-36673825 MS.gene018880:intron 40.0%
GTTATGTTTGGATCTTGCTC+AGG + chr1.2:36673430-36673449 None:intergenic 40.0%
TGGTAACATTCGCAACAGAT+CGG + chr1.2:36673966-36673985 None:intergenic 40.0%
! AGGTGTATTGTTTGGAACAC+CGG - chr1.2:36673314-36673333 MS.gene018880:intron 40.0%
! ATAATTTGATGGGTCGCAGT+CGG + chr1.2:36673473-36673492 None:intergenic 40.0%
! TCTTGGGAATTTGCGTTTTG+TGG - chr1.2:36673212-36673231 MS.gene018880:intron 40.0%
! TGGGTTTGGCTTATACAGTT+AGG + chr1.2:36673290-36673309 None:intergenic 40.0%
!!! GAGCCTGTTTGTTTTTTGAG+TGG + chr1.2:36672587-36672606 None:intergenic 40.0%
!!! GTTTCCACTTTTTTAGGTCC+TGG + chr1.2:36673631-36673650 None:intergenic 40.0%
AAAACTTGGCACCGCATTGA+GGG + chr1.2:36673888-36673907 None:intergenic 45.0%
ACACTTAGGACACGCATCAA+TGG + chr1.2:36673986-36674005 None:intergenic 45.0%
AGAGGAGGTTGAACTTGAGT+TGG + chr1.2:36673707-36673726 None:intergenic 45.0%
AGGAGAGTGATGGTTAAGAG+TGG - chr1.2:36672767-36672786 MS.gene018880:CDS 45.0%
AGGATAGGATAGGAGAGTGA+TGG - chr1.2:36672757-36672776 MS.gene018880:CDS 45.0%
GATGGTTAAGAGTGGGAACT+GGG - chr1.2:36672775-36672794 MS.gene018880:CDS 45.0%
GCGTGTCCTAAGTGTAGTAA+AGG - chr1.2:36673991-36674010 MS.gene018880:CDS 45.0%
GCTGGAATGTCAAAGTTGAG+TGG - chr1.2:36673787-36673806 MS.gene018880:intron 45.0%
GGAGAGTGATGGTTAAGAGT+GGG - chr1.2:36672768-36672787 MS.gene018880:CDS 45.0%
TAATATTCGAGCTTCGGCTG+AGG - chr1.2:36673765-36673784 MS.gene018880:intron 45.0%
TGATGGTTAAGAGTGGGAAC+TGG - chr1.2:36672774-36672793 MS.gene018880:CDS 45.0%
TTGGATCTTGCTCAGGAACT+AGG + chr1.2:36673423-36673442 None:intergenic 45.0%
! AATGGTGGGAGAAAGAGCAA+CGG - chr1.2:36673841-36673860 MS.gene018880:intron 45.0%
AACATGCTCCACAAGGGACA+CGG + chr1.2:36674028-36674047 None:intergenic 50.0%
AAGTCACGGCCAACTTGCAT+TGG + chr1.2:36672512-36672531 None:intergenic 50.0%
ATCTCTTTGCATCCAGCTGC+AGG + chr1.2:36673523-36673542 None:intergenic 50.0%
CATGTTGAGAGGGAACATGG+TGG - chr1.2:36674042-36674061 MS.gene018880:CDS 50.0%
CCTCTCAACATGCTCCACAA+GGG + chr1.2:36674034-36674053 None:intergenic 50.0%
CCTTGTGGAGCATGTTGAGA+GGG - chr1.2:36674032-36674051 MS.gene018880:CDS 50.0%
GAAAACTTGGCACCGCATTG+AGG + chr1.2:36673889-36673908 None:intergenic 50.0%
GAGCATGTTGAGAGGGAACA+TGG - chr1.2:36674039-36674058 MS.gene018880:CDS 50.0%
GATCTTGCTCAGGAACTAGG+CGG + chr1.2:36673420-36673439 None:intergenic 50.0%
GGTCCTGATCACAAATGTCC+AGG - chr1.2:36673610-36673629 MS.gene018880:intron 50.0%
GGTCCTGGACATTTGTGATC+AGG + chr1.2:36673616-36673635 None:intergenic 50.0%
TAGCAGCGATCGCAAGTGAA+AGG + chr1.2:36672162-36672181 None:intergenic 50.0%
TCTCTTTGCATCCAGCTGCA+GGG + chr1.2:36673522-36673541 None:intergenic 50.0%
! GCGCAGTGTTTTCCTAGATC+TGG + chr1.2:36672108-36672127 None:intergenic 50.0%
!! AAGAAAAAGTGCCCTGCAGC+TGG - chr1.2:36673508-36673527 MS.gene018880:intron 50.0%
ACATGCTCCACAAGGGACAC+GGG + chr1.2:36674027-36674046 None:intergenic 55.0%
CCCTCTCAACATGCTCCACA+AGG + chr1.2:36674035-36674054 None:intergenic 55.0%
CCCTTGTGGAGCATGTTGAG+AGG - chr1.2:36674031-36674050 MS.gene018880:CDS 55.0%
CGGACTCCTTTAGCGCAAAG+TGG + chr1.2:36673400-36673419 None:intergenic 55.0%
CGGCCAACTTGCATTGGAAG+TGG + chr1.2:36672506-36672525 None:intergenic 55.0%
GCATGGGGGACATCAAGCAA+TGG - chr1.2:36673823-36673842 MS.gene018880:intron 55.0%
GGGGGACATCAAGCAATGGT+GGG - chr1.2:36673827-36673846 MS.gene018880:intron 55.0%
GTGGAGCAATGCCCTCAATG+CGG - chr1.2:36673874-36673893 MS.gene018880:intron 55.0%
TGCTTGATGTCCCCCATGCT+TGG + chr1.2:36673822-36673841 None:intergenic 55.0%
TGGGGGACATCAAGCAATGG+TGG - chr1.2:36673826-36673845 MS.gene018880:intron 55.0%
ATTCGAGCTTCGGCTGAGGC+TGG - chr1.2:36673769-36673788 MS.gene018880:intron 60.0%
CACAGATCCCGTGTCCCTTG+TGG - chr1.2:36674017-36674036 MS.gene018880:CDS 60.0%
CACTTGCGATCGCTGCTACC+AGG - chr1.2:36672164-36672183 MS.gene018880:CDS 60.0%
GAGCAACGGCAGTGGTCAAG+TGG - chr1.2:36673855-36673874 MS.gene018880:intron 60.0%
GGGAGAAAGAGCAACGGCAG+TGG - chr1.2:36673847-36673866 MS.gene018880:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 36672087 36674080 36672087 ID=MS.gene018880
chr1.2 mRNA 36672087 36674080 36672087 ID=MS.gene018880.t1;Parent=MS.gene018880
chr1.2 exon 36673982 36674080 36673982 ID=MS.gene018880.t1.exon1;Parent=MS.gene018880.t1
chr1.2 CDS 36673982 36674080 36673982 ID=cds.MS.gene018880.t1;Parent=MS.gene018880.t1
chr1.2 exon 36672087 36672851 36672087 ID=MS.gene018880.t1.exon2;Parent=MS.gene018880.t1
chr1.2 CDS 36672087 36672851 36672087 ID=cds.MS.gene018880.t1;Parent=MS.gene018880.t1
Gene Sequence

>MS.gene018880

ATGGGGACTCCAGAATTTCCAGATCTAGGAAAACACTGCGCTGACTCCGATTGCAAGCTCGTTGATTTCTTGCCTTTCACTTGCGATCGCTGCTACCAGGTTCGTACTAACCAATTTCTCTTTTCTTTTTCTTCCTTCAACTTTTATGTGTCCACGTTGTTTCTGTTTAATTAATTTCCCACTATGCATTCTTAATAATTTGTTAAAAACATCTAATTGAAAGTACTTTTGGCCTAGATTTTATTATTAGGGTTTTGGGTTTACGGTATCCATTTAACGGTAGTTTCGATTTTCGAAGACTTTATTTGGATTTTATCTCAGGTTATATAATAAGTTGTTTTCAACTCATTTTAGTTAGCCCCAAAAAATAGCTTATATGATTAAGTGCTTAGTCTATATTAGGATAAACTTCAATACCACTTCCAATGCAAGTTGGCCGTGACTTTTGAGAAAGCTATAACTTGTTGCTTTGAATTGGACGCAAGTTTGAAGCTCACCCACTCAAAAAACAAACAGGCTCTTAGGTTATCTTCCTATAACAGCTTATCGAATAAACACTTAATTAAACACTTAAGACTTAATTAAACACTTAATTAATACAAACTAGCGAAGGATGAGAATTGGTTCTAAGTAATTTTTCTTAACAGAGCAGTTTTATTATAGCCTTTATAGGATAGGATAGGAGAGTGATGGTTAAGAGTGGGAACTGGGAAATCAAAACCAATTGAAGCTTCGCGTTTATTTTATTTTAATAAGCTTCAAAACCCACAAAATAAAAATATCATCAAACTATCATGTGAACAAATTGGAAGGAATCAGTGTTGTCAGTCGCAGATCAAGAAAATAGAGGTTTGTTCAAGTTCTGCTACGCTACAGCTACAATGCTATAACACTGCAGAGTCAAACGGTTTATCAAAATTACGGTATTGCAGAAAATAGGGATATTGTAACTTTTTAAATTTAAAAACTCTAAACGATGAAACTCGACTAAAACTCTGTTTGTCCTAAACGATTTTCATTTTTGGTTACATATTAGACATTGTATTTTTATTTTTGAGGTGTGCCTTAACTTCTAAAGTTCATGCAATCAACAATGTTTTTACTTATGATTTTGTTTGATGACATTCTTGGGAATTTGCGTTTTGTGGATTTATGTATTATGATTCTTTCTCTGTTCAGTTTGAAGAGCTCTTTATTTGACCTAACTGTATAAGCCAAACCCATTTTAGGTGTATTGTTTGGAACACCGGAGTTATATCAAACATCGGTGTACAAAAGCTGACAAGCAAGATGTCACTGTAGTAATATGTCCACTTTGCGCTAAAGGAGTCCGCCTAGTTCCTGAGCAAGATCCAAACATAACATGGGAGAATCATGTTAACACCGACTGCGACCCATCAAATTATGAGAAAGTTACAAAGAAGAAAAAGTGCCCTGCAGCTGGATGCAAAGAGATCTTAGTATTCTCAAACACAATTAAATGCAAGGATTGCACAATAGACCATTGTTTGAAGCATAGGTTTGGTCCTGATCACAAATGTCCAGGACCTAAAAAAGTGGAAACAAATTTCCCTTTTATGAATCTAATGAATAGGAGTAGAAAAAAGGAGTCTAAAACCAACTCAAGTTCAACCTCCTCTTCATCTAAATGGACTACAAGCTTTCTTAATGCCGCTTCTAATATTCGAGCTTCGGCTGAGGCTGGAATGTCAAAGTTGAGTGGTGAAATTAACCAAGCATGGGGGACATCAAGCAATGGTGGGAGAAAGAGCAACGGCAGTGGTCAAGTGGAGCAATGCCCTCAATGCGGTGCCAAGTTTTCCTCGATCACTACTTTAATCGATCATGTGCAAAAAGTTCATGAAAGAAGTGGCAGCCGATCTGTTGCGAATGTTACCATTGATGCGTGTCCTAAGTGTAGTAAAGGATTCACAGATCCCGTGTCCCTTGTGGAGCATGTTGAGAGGGAACATGGTGGCACTTCTAGAACGTAG
Protein sequence

>MS.gene018880.t1

MGTPEFPDLGKHCADSDCKLVDFLPFTCDRCYQVYCLEHRSYIKHRCTKADKQDVTVVICPLCAKGVRLVPEQDPNITWENHVNTDCDPSNYEKVTKKKKCPAAGCKEILVFSNTIKCKDCTIDHCLKHRFGPDHKCPGPKKVETNFPFMNLMNRSRKKESKTNSSSTSSSSKWTTSFLNAASNIRASAEAGMSKLSGEINQAWGTSSNGGRKSNGSGQVEQCPQCGAKFSSITTLIDHVQKVHERSGSRSVANVTIDACPKCSKGFTDPVSLVEHVEREHGGTSRT