Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018894.t1 | XP_024632961.1 | 91.8 | 404 | 25 | 1 | 277 | 672 | 47 | 450 | 9.40E-216 | 760 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018894.t1 | Q9SZL8 | 28.2 | 379 | 253 | 6 | 280 | 656 | 72 | 433 | 3.1e-42 | 174.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018894.t1 | D3YBB9 | 79.1 | 402 | 84 | 0 | 271 | 672 | 73 | 474 | 1.5e-186 | 662.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene018894.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018894.t1 | MTR_0558s0020 | 90.074 | 272 | 27 | 0 | 270 | 541 | 25 | 296 | 0.0 | 519 |
| MS.gene018894.t1 | MTR_1g083640 | 91.498 | 247 | 21 | 0 | 270 | 516 | 40 | 286 | 8.40e-168 | 481 |
| MS.gene018894.t1 | MTR_6g090505 | 76.895 | 277 | 54 | 1 | 311 | 577 | 1 | 277 | 3.52e-147 | 432 |
| MS.gene018894.t1 | MTR_8g446020 | 75.368 | 272 | 28 | 1 | 270 | 541 | 24 | 256 | 2.83e-141 | 413 |
| MS.gene018894.t1 | MTR_2g014100 | 87.324 | 213 | 27 | 0 | 270 | 482 | 33 | 245 | 7.68e-134 | 394 |
| MS.gene018894.t1 | MTR_0337s0040 | 71.369 | 241 | 30 | 1 | 270 | 510 | 25 | 226 | 1.67e-114 | 343 |
| MS.gene018894.t1 | MTR_3g008240 | 87.151 | 179 | 23 | 0 | 270 | 448 | 25 | 203 | 5.62e-109 | 328 |
| MS.gene018894.t1 | MTR_4g040430 | 86.034 | 179 | 21 | 1 | 270 | 448 | 24 | 198 | 6.59e-106 | 320 |
| MS.gene018894.t1 | MTR_0019s0290 | 86.928 | 153 | 17 | 1 | 330 | 479 | 8 | 160 | 5.13e-90 | 277 |
| MS.gene018894.t1 | MTR_1g055240 | 89.510 | 143 | 15 | 0 | 336 | 478 | 2 | 144 | 4.36e-88 | 272 |
| MS.gene018894.t1 | MTR_5g071590 | 89.209 | 139 | 15 | 0 | 273 | 411 | 40 | 178 | 9.97e-88 | 272 |
| MS.gene018894.t1 | MTR_1281s0010 | 90.291 | 103 | 10 | 0 | 271 | 373 | 7 | 109 | 7.47e-59 | 194 |
| MS.gene018894.t1 | MTR_6g051425 | 28.443 | 334 | 203 | 7 | 286 | 598 | 22 | 340 | 1.19e-32 | 129 |
| MS.gene018894.t1 | MTR_1g093780 | 40.179 | 224 | 119 | 5 | 4 | 221 | 211 | 425 | 8.48e-27 | 115 |
| MS.gene018894.t1 | MTR_8g046060 | 82.143 | 56 | 10 | 0 | 270 | 325 | 123 | 178 | 3.45e-22 | 95.9 |
| MS.gene018894.t1 | MTR_4g008820 | 78.571 | 56 | 12 | 0 | 270 | 325 | 149 | 204 | 2.62e-20 | 95.9 |
| MS.gene018894.t1 | MTR_1g070355 | 27.309 | 249 | 158 | 6 | 287 | 533 | 80 | 307 | 2.39e-17 | 86.3 |
| MS.gene018894.t1 | MTR_0337s0050 | 77.778 | 36 | 8 | 0 | 505 | 540 | 14 | 49 | 4.13e-13 | 65.5 |
| MS.gene018894.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 295 | 479 | 40 | 205 | 6.01e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018894.t1 | AT4G38180 | 28.684 | 380 | 242 | 7 | 280 | 652 | 72 | 429 | 3.22e-44 | 170 |
| MS.gene018894.t1 | AT3G06250 | 26.053 | 380 | 216 | 10 | 280 | 656 | 189 | 506 | 2.84e-32 | 134 |
| MS.gene018894.t1 | AT3G06250 | 26.053 | 380 | 216 | 10 | 280 | 656 | 189 | 506 | 2.84e-32 | 134 |
| MS.gene018894.t1 | AT3G06250 | 26.053 | 380 | 216 | 10 | 280 | 656 | 189 | 506 | 2.84e-32 | 134 |
| MS.gene018894.t1 | AT2G27110 | 31.100 | 209 | 142 | 1 | 457 | 663 | 179 | 387 | 2.26e-31 | 131 |
| MS.gene018894.t1 | AT2G27110 | 31.100 | 209 | 142 | 1 | 457 | 663 | 179 | 387 | 2.26e-31 | 131 |
| MS.gene018894.t1 | AT2G27110 | 31.100 | 209 | 142 | 1 | 457 | 663 | 34 | 242 | 2.27e-31 | 130 |
| MS.gene018894.t1 | AT5G28530 | 27.506 | 389 | 242 | 10 | 286 | 656 | 60 | 426 | 4.49e-30 | 126 |
| MS.gene018894.t1 | AT5G28530 | 27.506 | 389 | 242 | 10 | 286 | 656 | 60 | 426 | 4.75e-30 | 126 |
| MS.gene018894.t1 | AT5G28530 | 27.506 | 389 | 242 | 10 | 286 | 656 | 60 | 426 | 4.75e-30 | 126 |
| MS.gene018894.t1 | AT1G76320 | 26.431 | 367 | 232 | 10 | 296 | 656 | 12 | 346 | 1.13e-28 | 122 |
| MS.gene018894.t1 | AT1G76320 | 26.431 | 367 | 232 | 10 | 296 | 656 | 12 | 346 | 1.15e-28 | 122 |
| MS.gene018894.t1 | AT1G76320 | 26.431 | 367 | 232 | 10 | 296 | 656 | 12 | 346 | 1.15e-28 | 122 |
| MS.gene018894.t1 | AT1G76320 | 26.431 | 367 | 232 | 10 | 296 | 656 | 12 | 346 | 1.24e-28 | 122 |
| MS.gene018894.t1 | AT1G80010 | 26.425 | 386 | 236 | 12 | 287 | 656 | 101 | 454 | 2.30e-28 | 121 |
| MS.gene018894.t1 | AT4G15090 | 25.205 | 365 | 248 | 9 | 296 | 656 | 66 | 409 | 1.86e-27 | 119 |
| MS.gene018894.t1 | AT4G15090 | 25.205 | 365 | 248 | 9 | 296 | 656 | 66 | 409 | 1.86e-27 | 119 |
| MS.gene018894.t1 | AT4G15090 | 25.205 | 365 | 248 | 9 | 296 | 656 | 66 | 409 | 1.86e-27 | 119 |
| MS.gene018894.t1 | AT4G15090 | 25.205 | 365 | 248 | 9 | 296 | 656 | 66 | 409 | 1.86e-27 | 119 |
| MS.gene018894.t1 | AT4G15090 | 25.205 | 365 | 248 | 9 | 296 | 656 | 66 | 409 | 1.86e-27 | 119 |
| MS.gene018894.t1 | AT1G10240 | 26.371 | 383 | 246 | 12 | 286 | 656 | 53 | 411 | 2.20e-27 | 118 |
| MS.gene018894.t1 | AT1G10240 | 26.371 | 383 | 246 | 12 | 286 | 656 | 53 | 411 | 2.20e-27 | 118 |
| MS.gene018894.t1 | AT5G18960 | 25.641 | 351 | 192 | 10 | 280 | 623 | 210 | 498 | 2.65e-27 | 118 |
| MS.gene018894.t1 | AT5G18960 | 25.641 | 351 | 192 | 10 | 280 | 623 | 210 | 498 | 2.65e-27 | 118 |
| MS.gene018894.t1 | AT2G32250 | 26.776 | 366 | 198 | 12 | 296 | 656 | 53 | 353 | 7.87e-27 | 117 |
| MS.gene018894.t1 | AT2G32250 | 26.648 | 364 | 201 | 11 | 296 | 656 | 12 | 312 | 9.60e-27 | 116 |
| MS.gene018894.t1 | AT2G32250 | 26.648 | 364 | 201 | 11 | 296 | 656 | 12 | 312 | 1.04e-26 | 116 |
| MS.gene018894.t1 | AT2G32250 | 26.648 | 364 | 201 | 11 | 296 | 656 | 53 | 353 | 1.16e-26 | 116 |
| MS.gene018894.t1 | AT2G32250 | 26.648 | 364 | 201 | 11 | 296 | 656 | 53 | 353 | 1.16e-26 | 116 |
| MS.gene018894.t1 | AT2G32250 | 26.776 | 366 | 198 | 12 | 296 | 656 | 53 | 353 | 1.19e-26 | 116 |
| MS.gene018894.t1 | AT2G32250 | 26.776 | 366 | 198 | 12 | 296 | 656 | 53 | 353 | 1.19e-26 | 116 |
| MS.gene018894.t1 | AT2G32250 | 26.776 | 366 | 198 | 12 | 296 | 656 | 53 | 353 | 1.19e-26 | 116 |
| MS.gene018894.t1 | AT4G38170 | 30.601 | 183 | 120 | 3 | 481 | 660 | 24 | 202 | 1.35e-24 | 108 |
| MS.gene018894.t1 | AT3G22170 | 23.097 | 381 | 254 | 9 | 278 | 652 | 67 | 414 | 1.60e-23 | 106 |
| MS.gene018894.t1 | AT3G22170 | 23.097 | 381 | 254 | 9 | 278 | 652 | 67 | 414 | 1.60e-23 | 106 |
| MS.gene018894.t1 | AT1G52520 | 24.934 | 377 | 242 | 9 | 287 | 658 | 91 | 431 | 3.52e-23 | 105 |
| MS.gene018894.t1 | AT4G19990 | 24.595 | 370 | 232 | 10 | 287 | 652 | 27 | 353 | 6.38e-22 | 101 |
| MS.gene018894.t1 | AT4G19990 | 24.595 | 370 | 232 | 10 | 287 | 652 | 27 | 353 | 6.38e-22 | 101 |
| MS.gene018894.t1 | AT4G19990 | 24.595 | 370 | 232 | 10 | 287 | 652 | 27 | 353 | 6.79e-22 | 101 |
| MS.gene018894.t1 | AT4G19990 | 24.595 | 370 | 232 | 10 | 287 | 652 | 27 | 353 | 6.79e-22 | 101 |
| MS.gene018894.t1 | AT4G19990 | 24.595 | 370 | 232 | 10 | 287 | 652 | 27 | 353 | 7.21e-22 | 101 |
| MS.gene018894.t1 | AT4G19990 | 24.595 | 370 | 232 | 10 | 287 | 652 | 41 | 367 | 8.05e-22 | 101 |
| MS.gene018894.t1 | AT4G19990 | 30.729 | 192 | 128 | 4 | 465 | 652 | 106 | 296 | 9.82e-21 | 97.4 |
Find 0 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAATACAACAAAAA+TGG | - | 23430:4150-4169 | MS.gene018894:intergenic | 15.0% |
| !!! | ATGATGAAAAATTGTTTTAA+TGG | + | 23430:6350-6369 | MS.gene018894:CDS | 15.0% |
| !! | ACAAAATAAGAAATCTGATA+AGG | + | 23430:4704-4723 | MS.gene018894:CDS | 20.0% |
| !! | ATAGTATCAATTTAGTGATT+TGG | + | 23430:4223-4242 | MS.gene018894:intron | 20.0% |
| !! | ATCGAACAAAGAATATATAT+CGG | + | 23430:5342-5361 | MS.gene018894:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | 23430:4907-4926 | MS.gene018894:CDS | 20.0% |
| !! | TCTTACTTATTTAAACTACA+GGG | + | 23430:5527-5546 | MS.gene018894:intron | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | 23430:4908-4927 | MS.gene018894:CDS | 20.0% |
| !! | TTCTTACTTATTTAAACTAC+AGG | + | 23430:5526-5545 | MS.gene018894:intron | 20.0% |
| !! | TTGATTCAAATTTCGAATTT+AGG | + | 23430:4169-4188 | MS.gene018894:intron | 20.0% |
| !! | TTTCGATTTATGATATCTAA+TGG | + | 23430:4383-4402 | MS.gene018894:intron | 20.0% |
| !!! | AAAAATCTTGAGCAAATTTT+GGG | + | 23430:3690-3709 | MS.gene018894:intron | 20.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | 23430:4621-4640 | MS.gene018894:CDS | 20.0% |
| !!! | AATCAGATTTTGACTATAAT+TGG | + | 23430:6321-6340 | MS.gene018894:CDS | 20.0% |
| !!! | ATCAGATTTTGACTATAATT+GGG | + | 23430:6322-6341 | MS.gene018894:CDS | 20.0% |
| !!! | ATTTATATTTTGAACTACCT+AGG | + | 23430:5675-5694 | MS.gene018894:intron | 20.0% |
| !!! | GTTGTATTTTGTTCTAATAT+AGG | + | 23430:5971-5990 | MS.gene018894:intron | 20.0% |
| !!! | TGAAAAATTGTTTTAATGGA+AGG | + | 23430:6354-6373 | MS.gene018894:CDS | 20.0% |
| !!! | TTTTGATGAGTTAACTAATT+TGG | + | 23430:6280-6299 | MS.gene018894:CDS | 20.0% |
| ! | AAACCAATATACTGTGTAAA+TGG | - | 23430:4329-4348 | MS.gene018894:intergenic | 25.0% |
| ! | AAACCATTTACACAGTATAT+TGG | + | 23430:4323-4342 | MS.gene018894:intron | 25.0% |
| ! | ACTAAGTACTCATCAAAATT+AGG | - | 23430:3553-3572 | MS.gene018894:intergenic | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | 23430:5368-5387 | MS.gene018894:intergenic | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | 23430:6015-6034 | MS.gene018894:intergenic | 25.0% |
| ! | CAAACTTAAATGATGTTGAT+TGG | + | 23430:5651-5670 | MS.gene018894:intron | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | 23430:5293-5312 | MS.gene018894:CDS | 25.0% |
| ! | CTTACTTATTTAAACTACAG+GGG | + | 23430:5528-5547 | MS.gene018894:intron | 25.0% |
| ! | TGGATATCATAGTAAAAAGA+TGG | - | 23430:5221-5240 | MS.gene018894:intergenic | 25.0% |
| !! | AAAATCTTGAGCAAATTTTG+GGG | + | 23430:3691-3710 | MS.gene018894:intron | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | 23430:4655-4674 | MS.gene018894:CDS | 25.0% |
| !! | CAAAAATCTTGAGCAAATTT+TGG | + | 23430:3689-3708 | MS.gene018894:intron | 25.0% |
| !! | TGTTTACTTTCATTTTGTTC+TGG | + | 23430:5408-5427 | MS.gene018894:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | 23430:5255-5274 | MS.gene018894:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | + | 23430:5256-5275 | MS.gene018894:CDS | 25.0% |
| !!! | AGATAACAACTACTTTTGAT+TGG | + | 23430:6075-6094 | MS.gene018894:CDS | 25.0% |
| !!! | ATTCATACTGCATTTTAAAG+AGG | + | 23430:4112-4131 | MS.gene018894:CDS | 25.0% |
| !!! | GAATGATTTGGTTTATGTAA+TGG | - | 23430:4951-4970 | MS.gene018894:intergenic | 25.0% |
| !!! | GCTTTTTTAGAAATTTTAGC+AGG | - | 23430:3058-3077 | MS.gene018894:intergenic | 25.0% |
| !!! | TTTACACAGTATATTGGTTT+TGG | + | 23430:4329-4348 | MS.gene018894:intron | 25.0% |
| !!! | TTTTGGTCACTTTAACAAAT+AGG | - | 23430:3270-3289 | MS.gene018894:intergenic | 25.0% |
| AAAAACCCCATGAAAACAAA+TGG | - | 23430:5593-5612 | MS.gene018893:intergenic | 30.0% | |
| AAAACACCTGGAAAACTATT+CGG | - | 23430:6188-6207 | MS.gene018893:intergenic | 30.0% | |
| AAAATGCAGTATGAATTTGC+TGG | - | 23430:4108-4127 | MS.gene018893:intergenic | 30.0% | |
| AACAAACAAGGTTTCAAGAA+GGG | + | 23430:4750-4769 | MS.gene018894:CDS | 30.0% | |
| AACTCAAAAGAAATGGATAC+AGG | - | 23430:3364-3383 | MS.gene018894:intergenic | 30.0% | |
| AAGAATATATATCGGCCATT+AGG | + | 23430:5350-5369 | MS.gene018894:CDS | 30.0% | |
| AATTGAACTTTCCTCTTATC+TGG | - | 23430:3625-3644 | MS.gene018894:intergenic | 30.0% | |
| ACTACTACAGATGAAATTCT+GGG | + | 23430:3598-3617 | MS.gene018894:CDS | 30.0% | |
| AGAACGTCTAATGAAGTTAT+GGG | + | 23430:5053-5072 | MS.gene018894:CDS | 30.0% | |
| AGCTCATATGAATAACAAAC+AGG | + | 23430:3108-3127 | MS.gene018894:CDS | 30.0% | |
| AGGAAAGTTCAATTCATTGA+AGG | + | 23430:3631-3650 | MS.gene018894:CDS | 30.0% | |
| ATTGAACTTTCCTCTTATCT+GGG | - | 23430:3624-3643 | MS.gene018894:intergenic | 30.0% | |
| ATTTCATCTGTAGTAGTGAT+AGG | - | 23430:3595-3614 | MS.gene018894:intergenic | 30.0% | |
| CGTTATGTTTGTAACAAACA+AGG | + | 23430:4738-4757 | MS.gene018894:CDS | 30.0% | |
| CTCAAACAACTCAAAAGAAA+TGG | - | 23430:3371-3390 | MS.gene018894:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | + | 23430:6236-6255 | MS.gene018894:CDS | 30.0% | |
| TAAATTTCAGCTGCCTTTAT+TGG | + | 23430:5999-6018 | MS.gene018894:intron | 30.0% | |
| TAACAAACAAGGTTTCAAGA+AGG | + | 23430:4749-4768 | MS.gene018894:CDS | 30.0% | |
| TAAGAACTATAGTCAAACCT+AGG | - | 23430:5512-5531 | MS.gene018894:intergenic | 30.0% | |
| TAAGATATATAGATGGGATG+TGG | + | 23430:4914-4933 | MS.gene018894:CDS | 30.0% | |
| TATGAATAACAAACAGGTTG+AGG | + | 23430:3114-3133 | MS.gene018894:CDS | 30.0% | |
| TATGCATGGTGCATAAATTA+TGG | - | 23430:3767-3786 | MS.gene018894:intergenic | 30.0% | |
| TCAAGCTCAATCTAACAATA+TGG | + | 23430:3201-3220 | MS.gene018894:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | 23430:4980-4999 | MS.gene018894:intergenic | 30.0% | |
| TTCACAAACTCAATAACCAA+TGG | - | 23430:4816-4835 | MS.gene018894:intergenic | 30.0% | |
| ! | ACTAGTGTTATCAGTCTTTT+TGG | - | 23430:3287-3306 | MS.gene018894:intergenic | 30.0% |
| ! | TACTCACATTACAGTTGATA+AGG | + | 23430:3441-3460 | MS.gene018894:CDS | 30.0% |
| ! | TTAACCATGCTGTTTGTTTA+GGG | + | 23430:5552-5571 | MS.gene018894:intron | 30.0% |
| ! | TTCTAAAAAAGCTCACAATG+TGG | + | 23430:3066-3085 | MS.gene018894:CDS | 30.0% |
| ! | TTTAACCATGCTGTTTGTTT+AGG | + | 23430:5551-5570 | MS.gene018894:intron | 30.0% |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | 23430:5020-5039 | MS.gene018894:CDS | 30.0% |
| !!! | AATGATAGTGAGCTTTTTTC+AGG | + | 23430:3391-3410 | MS.gene018894:CDS | 30.0% |
| !!! | ATGATAGTGAGCTTTTTTCA+GGG | + | 23430:3392-3411 | MS.gene018894:CDS | 30.0% |
| !!! | CATCGTAAGAGTGTTTTATT+TGG | + | 23430:6032-6051 | MS.gene018894:CDS | 30.0% |
| AAAGAATGTAGTCGCGAAAA+TGG | - | 23430:3894-3913 | MS.gene018893:intergenic | 35.0% | |
| AAATCCCTAAACAAACAGCA+TGG | - | 23430:5559-5578 | MS.gene018893:intergenic | 35.0% | |
| AATCACAACCATCAGATAAC+AGG | + | 23430:3791-3810 | MS.gene018894:intron | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | 23430:5142-5161 | MS.gene018894:CDS | 35.0% | |
| ACAGTGTCAGAGTTATTCAA+AGG | - | 23430:3229-3248 | MS.gene018894:intergenic | 35.0% | |
| ATTGAGTTTACGCATTGTTG+AGG | + | 23430:5789-5808 | MS.gene018894:intron | 35.0% | |
| CACTACTACAGATGAAATTC+TGG | + | 23430:3597-3616 | MS.gene018894:CDS | 35.0% | |
| CAGATATCAAACCTGAAAGA+TGG | + | 23430:5621-5640 | MS.gene018894:intron | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | 23430:4990-5009 | MS.gene018894:CDS | 35.0% | |
| CTAAGGTAACACGAATGATT+TGG | - | 23430:4963-4982 | MS.gene018894:intergenic | 35.0% | |
| CTGGCATGTGTATTATAAGT+AGG | + | 23430:5470-5489 | MS.gene018894:intron | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | 23430:4839-4858 | MS.gene018894:CDS | 35.0% | |
| GAAAGTGAAAGAAAAACCTG+AGG | + | 23430:4833-4852 | MS.gene018894:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | 23430:5139-5158 | MS.gene018894:CDS | 35.0% | |
| GAGAACGTCTAATGAAGTTA+TGG | + | 23430:5052-5071 | MS.gene018894:CDS | 35.0% | |
| GCTTCTGATGGCAAAATTTA+TGG | + | 23430:3733-3752 | MS.gene018894:intron | 35.0% | |
| GGTAACTATGCATATAACAC+TGG | + | 23430:4642-4661 | MS.gene018894:CDS | 35.0% | |
| GGTTGTGATTAACTTATGCA+TGG | - | 23430:3781-3800 | MS.gene018894:intergenic | 35.0% | |
| TATCGTCTGTGGTTTCTTAT+TGG | - | 23430:6129-6148 | MS.gene018894:intergenic | 35.0% | |
| TCATCAAAATTAGGATCCCT+AGG | - | 23430:3544-3563 | MS.gene018894:intergenic | 35.0% | |
| TCCATGATTCTTCATTGCTA+GGG | - | 23430:4578-4597 | MS.gene018894:intergenic | 35.0% | |
| TCTAATGAAGTTATGGGTCA+AGG | + | 23430:5059-5078 | MS.gene018894:CDS | 35.0% | |
| TGAAAGAAAAACCTGAGGAA+AGG | + | 23430:4838-4857 | MS.gene018894:CDS | 35.0% | |
| TTCCATGATTCTTCATTGCT+AGG | - | 23430:4579-4598 | MS.gene018894:intergenic | 35.0% | |
| TTGTCTAAGTACAAATGCCT+AGG | - | 23430:5695-5714 | MS.gene018894:intergenic | 35.0% | |
| TTTAAGCCTGAAAACCGAAA+AGG | - | 23430:5107-5126 | MS.gene018894:intergenic | 35.0% | |
| TTTGTCTCAAACCATCTTTC+AGG | - | 23430:5635-5654 | MS.gene018894:intergenic | 35.0% | |
| ! | AATCTTCCTTTTCGGTTTTC+AGG | + | 23430:5098-5117 | MS.gene018894:CDS | 35.0% |
| ! | AGTTTTCCAGGTGTTTTTCA+TGG | + | 23430:6191-6210 | MS.gene018894:CDS | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | 23430:6192-6211 | MS.gene018894:CDS | 35.0% |
| ! | TCAATTCCGAATAGTTTTCC+AGG | + | 23430:6179-6198 | MS.gene018894:CDS | 35.0% |
| ! | TGCATGTTGCATTTTTGTTC+TGG | + | 23430:5451-5470 | MS.gene018894:intron | 35.0% |
| !! | AGCTGGAATATCTTTGAAGT+TGG | + | 23430:4872-4891 | MS.gene018894:CDS | 35.0% |
| !! | ATGAGCTTTAGAATGAGCTT+TGG | - | 23430:3095-3114 | MS.gene018894:intergenic | 35.0% |
| !! | CATCTTTCAGGTTTGATATC+TGG | - | 23430:5623-5642 | MS.gene018894:intergenic | 35.0% |
| !! | CTTCTGCCATTTGTTTTCAT+GGG | + | 23430:5584-5603 | MS.gene018894:intron | 35.0% |
| !! | TCTGATGTTGTCTTGTTGTT+AGG | - | 23430:4789-4808 | MS.gene018894:intergenic | 35.0% |
| !! | TTCTGCCATTTGTTTTCATG+GGG | + | 23430:5585-5604 | MS.gene018894:intron | 35.0% |
| !!! | ATGGATACAGGTAGTTTTGT+TGG | - | 23430:3352-3371 | MS.gene018894:intergenic | 35.0% |
| !!! | GCTAGTATTTTTTGGGTAGA+TGG | + | 23430:5263-5282 | MS.gene018894:CDS | 35.0% |
| !!! | TGATAGTGAGCTTTTTTCAG+GGG | + | 23430:3393-3412 | MS.gene018894:CDS | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | 23430:6204-6223 | MS.gene018894:CDS | 35.0% |
| AAAACGGAGAAAGATTGTGG+GGG | - | 23430:3851-3870 | MS.gene018893:intergenic | 40.0% | |
| ACAAGTGTCCTGTTATCTGA+TGG | - | 23430:3802-3821 | MS.gene018894:intergenic | 40.0% | |
| ACAGACGATATATACAGACC+AGG | + | 23430:6139-6158 | MS.gene018894:CDS | 40.0% | |
| AGATAGCAGTTTCGCGAAAA+CGG | - | 23430:3867-3886 | MS.gene018894:intergenic | 40.0% | |
| CATTGCTCAATCTGGAAATG+AGG | + | 23430:3153-3172 | MS.gene018894:CDS | 40.0% | |
| CCATGATTCTTCATTGCTAG+GGG | - | 23430:4577-4596 | MS.gene018894:intergenic | 40.0% | |
| CGAAAACGGAGAAAGATTGT+GGG | - | 23430:3853-3872 | MS.gene018894:intergenic | 40.0% | |
| GAAAACGGAGAAAGATTGTG+GGG | - | 23430:3852-3871 | MS.gene018894:intergenic | 40.0% | |
| GAATAACTCTGACACTGTTG+TGG | + | 23430:3231-3250 | MS.gene018894:CDS | 40.0% | |
| GATGCCTATCAGTCTAAATG+TGG | + | 23430:3465-3484 | MS.gene018894:CDS | 40.0% | |
| GGACACTTGTAATGATCCTA+TGG | + | 23430:3812-3831 | MS.gene018894:intron | 40.0% | |
| GTTCACAACATTGCTCAATC+TGG | + | 23430:3145-3164 | MS.gene018894:CDS | 40.0% | |
| TCCATTCTTAGAGGTTCCTA+GGG | + | 23430:3525-3544 | MS.gene018894:CDS | 40.0% | |
| TCCTCCACATTTAGACTGAT+AGG | - | 23430:3472-3491 | MS.gene018894:intergenic | 40.0% | |
| TGAAATTCGTGCAACCTAGA+CGG | - | 23430:4046-4065 | MS.gene018894:intergenic | 40.0% | |
| TGAGTAATTTCCATGTCAGC+TGG | - | 23430:3427-3446 | MS.gene018894:intergenic | 40.0% | |
| TGCTATTGTGACAAACCAGA+AGG | + | 23430:3318-3337 | MS.gene018894:CDS | 40.0% | |
| TGGTCTGTATATATCGTCTG+TGG | - | 23430:6140-6159 | MS.gene018894:intergenic | 40.0% | |
| TTGCGATTACAGACCACTAA+GGG | + | 23430:5828-5847 | MS.gene018894:intron | 40.0% | |
| ! | AGCAAGCTAAAGTCTGAAGT+TGG | - | 23430:6380-6399 | MS.gene018894:intergenic | 40.0% |
| ! | CGATCACACAAGACATTTTC+AGG | - | 23430:5719-5738 | MS.gene018894:intergenic | 40.0% |
| ! | GAGTACATTTTGAACTGCCT+AGG | + | 23430:5492-5511 | MS.gene018894:intron | 40.0% |
| ! | GCACGAAGAATCTTCCTTTT+CGG | + | 23430:5090-5109 | MS.gene018894:CDS | 40.0% |
| !! | ATGAATTTGCTGGAGATAGC+TGG | - | 23430:4098-4117 | MS.gene018894:intergenic | 40.0% |
| !! | CAAATTTTGGGGAGATGTGA+TGG | + | 23430:3702-3721 | MS.gene018894:intron | 40.0% |
| !! | GCTTCTGCCATTTGTTTTCA+TGG | + | 23430:5583-5602 | MS.gene018894:intron | 40.0% |
| !!! | GTGTTCGTTGCTGTTTTCAA+TGG | + | 23430:4422-4441 | MS.gene018894:intron | 40.0% |
| AAACGTGAAGCAAGGTTCAC+CGG | - | 23430:3974-3993 | MS.gene018893:intergenic | 45.0% | |
| AAATTCTGGGCCCAGATAAG+AGG | + | 23430:3611-3630 | MS.gene018894:CDS | 45.0% | |
| AACACAATAACGCACTAGCC+TGG | - | 23430:6160-6179 | MS.gene018894:intergenic | 45.0% | |
| AACTCTGACACTGTTGTGGA+AGG | + | 23430:3235-3254 | MS.gene018894:CDS | 45.0% | |
| AAGTCCAATCCAACCCTTAG+TGG | - | 23430:5844-5863 | MS.gene018894:intergenic | 45.0% | |
| AATCACGTCGCAATCATGAC+TGG | - | 23430:4020-4039 | MS.gene018894:intergenic | 45.0% | |
| AGACAAGTGTTCCCTCTCTA+GGG | - | 23430:3500-3519 | MS.gene018894:intergenic | 45.0% | |
| ATGGACACTGATGCTTCTGA+TGG | + | 23430:3721-3740 | MS.gene018894:intron | 45.0% | |
| ATTGTGACAAACCAGAAGGC+TGG | + | 23430:3322-3341 | MS.gene018894:CDS | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | 23430:6200-6219 | MS.gene018894:intergenic | 45.0% | |
| CAATCTGGAAATGAGGCAGT+TGG | + | 23430:3160-3179 | MS.gene018894:CDS | 45.0% | |
| CCCCTAGCAATGAAGAATCA+TGG | + | 23430:4574-4593 | MS.gene018894:intron | 45.0% | |
| CGAATTTCACCCTTTCTCAC+CGG | + | 23430:4057-4076 | MS.gene018894:CDS | 45.0% | |
| CTCCATTCTTAGAGGTTCCT+AGG | + | 23430:3524-3543 | MS.gene018894:CDS | 45.0% | |
| CTTGCGATTACAGACCACTA+AGG | + | 23430:5827-5846 | MS.gene018894:intron | 45.0% | |
| GAAAAACCTGAGGAAAGGGT+TGG | + | 23430:4843-4862 | MS.gene018894:CDS | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | + | 23430:5065-5084 | MS.gene018894:CDS | 45.0% | |
| GACAACATCAGACAGTCCAT+TGG | + | 23430:4797-4816 | MS.gene018894:CDS | 45.0% | |
| GATAGCTGGAAAAACGGTGT+CGG | - | 23430:4084-4103 | MS.gene018894:intergenic | 45.0% | |
| GATTACAGACCACTAAGGGT+TGG | + | 23430:5832-5851 | MS.gene018894:intron | 45.0% | |
| GCCTATCAGTCTAAATGTGG+AGG | + | 23430:3468-3487 | MS.gene018894:CDS | 45.0% | |
| GCGAAAACGGAGAAAGATTG+TGG | - | 23430:3854-3873 | MS.gene018894:intergenic | 45.0% | |
| GCTGGAGATAGCTGGAAAAA+CGG | - | 23430:4090-4109 | MS.gene018894:intergenic | 45.0% | |
| GTAGTGATAGGAGTGATGCT+AGG | - | 23430:3583-3602 | MS.gene018894:intergenic | 45.0% | |
| TCATGACTGGAAAACGACGT+CGG | - | 23430:4007-4026 | MS.gene018894:intergenic | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | 23430:5241-5260 | MS.gene018894:intergenic | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | 23430:4852-4871 | MS.gene018894:intergenic | 45.0% | |
| TTGTGACAAACCAGAAGGCT+GGG | + | 23430:3323-3342 | MS.gene018894:CDS | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | 23430:5146-5165 | MS.gene018894:CDS | 45.0% |
| ! | CTAGGAACCTCTAAGAATGG+AGG | - | 23430:3526-3545 | MS.gene018894:intergenic | 45.0% |
| ! | TCCCTAGGAACCTCTAAGAA+TGG | - | 23430:3529-3548 | MS.gene018894:intergenic | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | 23430:4855-4874 | MS.gene018894:CDS | 45.0% |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | 23430:4495-4514 | MS.gene018894:intron | 45.0% |
| !!! | TAGTGAGCTTTTTTCAGGGG+AGG | + | 23430:3396-3415 | MS.gene018894:CDS | 45.0% |
| CAATCACACCGTTACGAAGC+CGG | - | 23430:3940-3959 | MS.gene018894:intergenic | 50.0% | |
| CAGACCACTAAGGGTTGGAT+TGG | + | 23430:5837-5856 | MS.gene018894:intron | 50.0% | |
| CTTTGCTACGATTTCCGACG+TGG | + | 23430:3910-3929 | MS.gene018894:CDS | 50.0% | |
| GAGACAAGTGTTCCCTCTCT+AGG | - | 23430:3501-3520 | MS.gene018894:intergenic | 50.0% | |
| GCAAGGTTCACCGGTGAAAT+CGG | - | 23430:3965-3984 | MS.gene018894:intergenic | 50.0% | |
| GTCTCCTCCTCCATTCTTAG+AGG | + | 23430:3516-3535 | MS.gene018894:CDS | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | + | 23430:5068-5087 | MS.gene018894:CDS | 50.0% | |
| TCTGACACTGTTGTGGAAGG+TGG | + | 23430:3238-3257 | MS.gene018894:CDS | 50.0% | |
| TTGTTGGATTCCCAGCCTTC+TGG | - | 23430:3336-3355 | MS.gene018894:intergenic | 50.0% | |
| ! | CGATTTCCGACGTGGTTTTC+CGG | + | 23430:3918-3937 | MS.gene018894:CDS | 50.0% |
| ! | GGAACCTCTAAGAATGGAGG+AGG | - | 23430:3523-3542 | MS.gene018894:intergenic | 50.0% |
| ! | GGGTCTGAGTTGAGAACCAT+AGG | - | 23430:3831-3850 | MS.gene018894:intergenic | 50.0% |
| ! | GTGGTTTTCCGGCTTCGTAA+CGG | + | 23430:3929-3948 | MS.gene018894:CDS | 50.0% |
| !! | TGGGCTTTGTTCATGGCACA+TGG | + | 23430:6211-6230 | MS.gene018894:CDS | 50.0% |
| !! | TGTGATTGCGCCGATTTCAC+CGG | + | 23430:3952-3971 | MS.gene018894:CDS | 50.0% |
| !!! | AGCTTTTTTCAGGGGAGGCT+AGG | + | 23430:3401-3420 | MS.gene018894:CDS | 50.0% |
| ACGAAGCCGGAAAACCACGT+CGG | - | 23430:3927-3946 | MS.gene018894:intergenic | 55.0% | |
| ACTGGAAAACGACGTCGGAG+CGG | - | 23430:4002-4021 | MS.gene018894:intergenic | 55.0% | |
| CACTGTTGTGGAAGGTGGTG+AGG | + | 23430:3243-3262 | MS.gene018894:CDS | 55.0% | |
| CGGTGAGCAAACGTGAAGCA+AGG | - | 23430:3982-4001 | MS.gene018894:intergenic | 55.0% | |
| GCGACGTGATTTCACCGTCT+AGG | + | 23430:4029-4048 | MS.gene018894:intron | 55.0% | |
| GGAGGACACTTCCCTAGAGA+GGG | + | 23430:3486-3505 | MS.gene018894:CDS | 55.0% | |
| TGGAGGACACTTCCCTAGAG+AGG | + | 23430:3485-3504 | MS.gene018894:CDS | 55.0% | |
| ! | CTGGAAAAACGGTGTCGGAC+CGG | - | 23430:4079-4098 | MS.gene018894:intergenic | 55.0% |
| ! | GGTGTCGGACCGGTGAGAAA+GGG | - | 23430:4069-4088 | MS.gene018894:intergenic | 60.0% |
| GGAGGCTAGGCCAGCTGACA+TGG | + | 23430:3414-3433 | MS.gene018894:CDS | 65.0% | |
| ! | CGGTGTCGGACCGGTGAGAA+AGG | - | 23430:4070-4089 | MS.gene018894:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 23430 | gene | 3046 | 6406 | 3046 | ID=MS.gene018894 |
| 23430 | mRNA | 3046 | 6406 | 3046 | ID=MS.gene018894.t1;Parent=MS.gene018894 |
| 23430 | exon | 3046 | 3665 | 3046 | ID=MS.gene018894.t1.exon1;Parent=MS.gene018894.t1 |
| 23430 | CDS | 3046 | 3665 | 3046 | ID=cds.MS.gene018894.t1;Parent=MS.gene018894.t1 |
| 23430 | exon | 3847 | 3973 | 3847 | ID=MS.gene018894.t1.exon2;Parent=MS.gene018894.t1 |
| 23430 | CDS | 3847 | 3973 | 3847 | ID=cds.MS.gene018894.t1;Parent=MS.gene018894.t1 |
| 23430 | exon | 4051 | 4133 | 4051 | ID=MS.gene018894.t1.exon3;Parent=MS.gene018894.t1 |
| 23430 | CDS | 4051 | 4133 | 4051 | ID=cds.MS.gene018894.t1;Parent=MS.gene018894.t1 |
| 23430 | exon | 4581 | 5371 | 4581 | ID=MS.gene018894.t1.exon4;Parent=MS.gene018894.t1 |
| 23430 | CDS | 4581 | 5371 | 4581 | ID=cds.MS.gene018894.t1;Parent=MS.gene018894.t1 |
| 23430 | exon | 6009 | 6406 | 6009 | ID=MS.gene018894.t1.exon5;Parent=MS.gene018894.t1 |
| 23430 | CDS | 6009 | 6406 | 6009 | ID=cds.MS.gene018894.t1;Parent=MS.gene018894.t1 |
| Gene Sequence |
| Protein sequence |
