Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018922.t1 | AFK34595.1 | 80.5 | 466 | 66 | 2 | 1 | 442 | 1 | 465 | 8.40E-181 | 643.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018922.t1 | Q8LFV3 | 46.3 | 374 | 137 | 13 | 103 | 440 | 101 | 446 | 5.2e-70 | 266.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018922.t1 | I3S2V3 | 80.5 | 466 | 66 | 2 | 1 | 442 | 1 | 465 | 6.1e-181 | 643.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene018922.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018922.t1 | MTR_3g435480 | 86.296 | 467 | 37 | 4 | 1 | 442 | 1 | 465 | 0.0 | 810 |
MS.gene018922.t1 | MTR_4g082060 | 43.215 | 479 | 221 | 18 | 1 | 442 | 1 | 465 | 8.12e-103 | 314 |
MS.gene018922.t1 | MTR_7g010950 | 43.110 | 508 | 201 | 19 | 1 | 442 | 1 | 486 | 9.14e-98 | 301 |
MS.gene018922.t1 | MTR_6g012450 | 41.440 | 514 | 210 | 19 | 1 | 442 | 1 | 495 | 2.49e-97 | 301 |
MS.gene018922.t1 | MTR_5g041400 | 39.566 | 369 | 115 | 13 | 83 | 440 | 90 | 361 | 4.39e-60 | 200 |
MS.gene018922.t1 | MTR_8g044220 | 34.375 | 480 | 224 | 20 | 3 | 441 | 9 | 438 | 2.62e-59 | 200 |
MS.gene018922.t1 | MTR_5g041380 | 37.398 | 369 | 123 | 12 | 83 | 440 | 98 | 369 | 6.96e-59 | 197 |
MS.gene018922.t1 | MTR_5g041530 | 36.010 | 411 | 162 | 17 | 36 | 440 | 64 | 379 | 2.59e-54 | 186 |
MS.gene018922.t1 | MTR_7g086780 | 33.472 | 481 | 220 | 20 | 1 | 441 | 1 | 421 | 1.36e-51 | 179 |
MS.gene018922.t1 | MTR_6g027460 | 33.129 | 326 | 151 | 11 | 4 | 316 | 9 | 280 | 4.98e-39 | 144 |
MS.gene018922.t1 | MTR_5g041420 | 50.000 | 136 | 61 | 2 | 46 | 176 | 74 | 207 | 1.76e-38 | 142 |
MS.gene018922.t1 | MTR_6g027450 | 36.940 | 268 | 130 | 10 | 81 | 314 | 48 | 310 | 4.06e-36 | 135 |
MS.gene018922.t1 | MTR_2g016030 | 78.333 | 60 | 13 | 0 | 106 | 165 | 41 | 100 | 9.45e-31 | 116 |
MS.gene018922.t1 | MTR_8g079060 | 56.322 | 87 | 34 | 2 | 112 | 198 | 29 | 111 | 8.05e-28 | 110 |
MS.gene018922.t1 | MTR_3g091820 | 61.333 | 75 | 29 | 0 | 91 | 165 | 22 | 96 | 9.75e-27 | 109 |
MS.gene018922.t1 | MTR_2g093220 | 69.697 | 66 | 19 | 1 | 101 | 165 | 28 | 93 | 8.01e-26 | 106 |
MS.gene018922.t1 | MTR_8g027295 | 69.492 | 59 | 18 | 0 | 107 | 165 | 19 | 77 | 1.06e-25 | 105 |
MS.gene018922.t1 | MTR_1g077600 | 45.946 | 111 | 54 | 3 | 106 | 216 | 37 | 141 | 1.81e-24 | 102 |
MS.gene018922.t1 | MTR_1g077600 | 45.946 | 111 | 54 | 3 | 106 | 216 | 37 | 141 | 2.33e-24 | 102 |
MS.gene018922.t1 | MTR_8g479350 | 67.797 | 59 | 19 | 0 | 112 | 170 | 68 | 126 | 5.83e-24 | 102 |
MS.gene018922.t1 | MTR_4g088580 | 76.923 | 52 | 12 | 0 | 114 | 165 | 57 | 108 | 7.56e-24 | 102 |
MS.gene018922.t1 | MTR_4g461080 | 67.692 | 65 | 20 | 1 | 101 | 164 | 17 | 81 | 8.50e-24 | 100 |
MS.gene018922.t1 | MTR_4g022370 | 59.091 | 66 | 27 | 0 | 100 | 165 | 70 | 135 | 9.72e-24 | 102 |
MS.gene018922.t1 | MTR_1g056810 | 66.129 | 62 | 20 | 1 | 114 | 174 | 14 | 75 | 1.37e-23 | 100 |
MS.gene018922.t1 | MTR_3g090430 | 73.077 | 52 | 14 | 0 | 114 | 165 | 53 | 104 | 1.77e-23 | 100 |
MS.gene018922.t1 | MTR_3g077750 | 66.129 | 62 | 20 | 1 | 102 | 162 | 50 | 111 | 2.61e-23 | 100 |
MS.gene018922.t1 | MTR_2g096740 | 70.370 | 54 | 16 | 0 | 112 | 165 | 62 | 115 | 3.83e-23 | 99.4 |
MS.gene018922.t1 | MTR_2g096740 | 70.370 | 54 | 16 | 0 | 112 | 165 | 77 | 130 | 3.88e-23 | 99.4 |
MS.gene018922.t1 | MTR_4g063780 | 59.722 | 72 | 28 | 1 | 100 | 170 | 63 | 134 | 5.55e-23 | 99.8 |
MS.gene018922.t1 | MTR_8g068210 | 51.807 | 83 | 34 | 1 | 83 | 165 | 9 | 85 | 7.70e-23 | 99.4 |
MS.gene018922.t1 | MTR_8g015840 | 64.516 | 62 | 22 | 0 | 112 | 173 | 20 | 81 | 1.08e-22 | 96.3 |
MS.gene018922.t1 | MTR_2g059540 | 75.510 | 49 | 12 | 0 | 112 | 160 | 31 | 79 | 1.08e-22 | 95.9 |
MS.gene018922.t1 | MTR_4g089095 | 68.519 | 54 | 17 | 0 | 112 | 165 | 50 | 103 | 1.87e-22 | 97.4 |
MS.gene018922.t1 | MTR_2g014170 | 75.510 | 49 | 12 | 0 | 112 | 160 | 45 | 93 | 2.01e-22 | 97.4 |
MS.gene018922.t1 | MTR_4g089095 | 68.519 | 54 | 17 | 0 | 112 | 165 | 16 | 69 | 2.88e-22 | 96.3 |
MS.gene018922.t1 | MTR_2g013370 | 75.000 | 52 | 12 | 1 | 114 | 165 | 48 | 98 | 5.03e-22 | 95.9 |
MS.gene018922.t1 | MTR_2g014060 | 72.000 | 50 | 14 | 0 | 114 | 163 | 27 | 76 | 5.29e-22 | 97.1 |
MS.gene018922.t1 | MTR_4g109980 | 67.925 | 53 | 17 | 0 | 110 | 162 | 38 | 90 | 6.02e-22 | 96.3 |
MS.gene018922.t1 | MTR_7g059400 | 57.576 | 66 | 28 | 0 | 100 | 165 | 64 | 129 | 6.33e-22 | 96.7 |
MS.gene018922.t1 | MTR_7g024670 | 72.549 | 51 | 14 | 0 | 114 | 164 | 79 | 129 | 7.77e-22 | 97.1 |
MS.gene018922.t1 | MTR_5g031440 | 63.636 | 55 | 20 | 0 | 108 | 162 | 39 | 93 | 2.03e-21 | 95.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene018922.t1 | AT3G47500 | 48.837 | 473 | 181 | 17 | 1 | 440 | 2 | 446 | 5.94e-110 | 332 |
MS.gene018922.t1 | AT5G62430 | 40.807 | 446 | 108 | 14 | 1 | 440 | 1 | 296 | 1.20e-84 | 261 |
MS.gene018922.t1 | AT5G39660 | 41.801 | 433 | 175 | 19 | 38 | 442 | 74 | 457 | 2.71e-83 | 263 |
MS.gene018922.t1 | AT5G39660 | 41.801 | 433 | 175 | 19 | 38 | 442 | 74 | 457 | 2.71e-83 | 263 |
MS.gene018922.t1 | AT5G39660 | 41.801 | 433 | 175 | 19 | 38 | 442 | 74 | 457 | 2.71e-83 | 263 |
MS.gene018922.t1 | AT1G69570 | 32.919 | 483 | 195 | 19 | 1 | 441 | 1 | 396 | 7.53e-52 | 179 |
MS.gene018922.t1 | AT1G26790 | 33.425 | 365 | 166 | 13 | 81 | 440 | 78 | 370 | 1.28e-43 | 157 |
MS.gene018922.t1 | AT2G34140 | 56.989 | 93 | 40 | 0 | 73 | 165 | 19 | 111 | 3.23e-33 | 123 |
MS.gene018922.t1 | AT1G29160 | 80.000 | 60 | 12 | 0 | 106 | 165 | 56 | 115 | 2.81e-32 | 121 |
MS.gene018922.t1 | AT5G60200 | 50.000 | 104 | 50 | 1 | 108 | 209 | 51 | 154 | 6.27e-27 | 108 |
MS.gene018922.t1 | AT3G61850 | 65.079 | 63 | 22 | 0 | 107 | 169 | 57 | 119 | 3.80e-25 | 104 |
MS.gene018922.t1 | AT3G61850 | 65.079 | 63 | 22 | 0 | 107 | 169 | 57 | 119 | 3.80e-25 | 104 |
MS.gene018922.t1 | AT3G61850 | 65.079 | 63 | 22 | 0 | 107 | 169 | 69 | 131 | 4.53e-25 | 104 |
MS.gene018922.t1 | AT3G50410 | 71.930 | 57 | 16 | 0 | 112 | 168 | 30 | 86 | 4.60e-25 | 103 |
MS.gene018922.t1 | AT4G24060 | 62.121 | 66 | 25 | 0 | 100 | 165 | 41 | 106 | 4.60e-25 | 105 |
MS.gene018922.t1 | AT2G28510 | 71.186 | 59 | 17 | 0 | 114 | 172 | 50 | 108 | 5.31e-25 | 104 |
MS.gene018922.t1 | AT3G61850 | 65.079 | 63 | 22 | 0 | 107 | 169 | 57 | 119 | 6.13e-25 | 104 |
MS.gene018922.t1 | AT3G61850 | 65.079 | 63 | 22 | 0 | 107 | 169 | 69 | 131 | 6.29e-25 | 105 |
MS.gene018922.t1 | AT3G45610 | 61.905 | 63 | 24 | 0 | 108 | 170 | 36 | 98 | 7.78e-25 | 102 |
MS.gene018922.t1 | AT2G28810 | 58.667 | 75 | 27 | 1 | 93 | 163 | 54 | 128 | 2.46e-24 | 103 |
MS.gene018922.t1 | AT1G51700 | 57.333 | 75 | 28 | 1 | 112 | 182 | 33 | 107 | 3.81e-24 | 99.8 |
MS.gene018922.t1 | AT2G28810 | 58.667 | 75 | 27 | 1 | 93 | 163 | 71 | 145 | 3.85e-24 | 103 |
MS.gene018922.t1 | AT1G28310 | 74.074 | 54 | 14 | 0 | 112 | 165 | 27 | 80 | 5.53e-24 | 102 |
MS.gene018922.t1 | AT1G28310 | 74.074 | 54 | 14 | 0 | 112 | 165 | 51 | 104 | 9.26e-24 | 102 |
MS.gene018922.t1 | AT4G00940 | 67.797 | 59 | 19 | 0 | 107 | 165 | 63 | 121 | 1.40e-23 | 100 |
MS.gene018922.t1 | AT4G00940 | 67.797 | 59 | 19 | 0 | 107 | 165 | 63 | 121 | 1.40e-23 | 100 |
MS.gene018922.t1 | AT4G00940 | 67.797 | 59 | 19 | 0 | 107 | 165 | 63 | 121 | 1.40e-23 | 100 |
MS.gene018922.t1 | AT3G55370 | 55.714 | 70 | 31 | 0 | 108 | 177 | 72 | 141 | 1.63e-23 | 100 |
MS.gene018922.t1 | AT3G21270 | 73.585 | 53 | 14 | 0 | 112 | 164 | 29 | 81 | 1.69e-23 | 98.2 |
MS.gene018922.t1 | AT5G60850 | 62.121 | 66 | 25 | 0 | 100 | 165 | 39 | 104 | 1.69e-23 | 100 |
MS.gene018922.t1 | AT3G55370 | 55.714 | 70 | 31 | 0 | 108 | 177 | 72 | 141 | 1.75e-23 | 101 |
MS.gene018922.t1 | AT1G21340 | 62.295 | 61 | 22 | 1 | 114 | 173 | 40 | 100 | 1.78e-23 | 99.4 |
MS.gene018922.t1 | AT1G47655 | 77.551 | 49 | 11 | 0 | 112 | 160 | 29 | 77 | 2.33e-23 | 97.8 |
MS.gene018922.t1 | AT2G37590 | 57.576 | 66 | 28 | 0 | 100 | 165 | 77 | 142 | 2.43e-23 | 100 |
MS.gene018922.t1 | AT3G55370 | 55.714 | 70 | 31 | 0 | 108 | 177 | 117 | 186 | 2.52e-23 | 101 |
MS.gene018922.t1 | AT1G07640 | 71.698 | 53 | 15 | 0 | 112 | 164 | 21 | 73 | 2.79e-23 | 99.4 |
MS.gene018922.t1 | AT5G66940 | 48.315 | 89 | 43 | 1 | 86 | 171 | 3 | 91 | 2.83e-23 | 98.2 |
MS.gene018922.t1 | AT1G07640 | 71.698 | 53 | 15 | 0 | 112 | 164 | 77 | 129 | 3.17e-23 | 100 |
MS.gene018922.t1 | AT3G52440 | 68.421 | 57 | 18 | 0 | 114 | 170 | 27 | 83 | 3.79e-23 | 98.2 |
MS.gene018922.t1 | AT1G07640 | 71.698 | 53 | 15 | 0 | 112 | 164 | 85 | 137 | 3.92e-23 | 100 |
MS.gene018922.t1 | AT1G64620 | 63.934 | 61 | 22 | 0 | 100 | 160 | 37 | 97 | 4.06e-23 | 100 |
MS.gene018922.t1 | AT3G52440 | 68.421 | 57 | 18 | 0 | 114 | 170 | 46 | 102 | 5.01e-23 | 98.6 |
MS.gene018922.t1 | AT2G46590 | 69.811 | 53 | 16 | 0 | 107 | 159 | 63 | 115 | 6.76e-23 | 99.8 |
MS.gene018922.t1 | AT2G46590 | 69.811 | 53 | 16 | 0 | 107 | 159 | 75 | 127 | 8.40e-23 | 99.8 |
MS.gene018922.t1 | AT5G65590 | 70.370 | 54 | 16 | 0 | 112 | 165 | 41 | 94 | 1.07e-22 | 98.6 |
MS.gene018922.t1 | AT5G02460 | 59.091 | 66 | 27 | 0 | 100 | 165 | 83 | 148 | 2.32e-22 | 99.0 |
MS.gene018922.t1 | AT5G62940 | 73.469 | 49 | 13 | 0 | 114 | 162 | 75 | 123 | 2.49e-21 | 95.5 |
MS.gene018922.t1 | AT4G21050 | 57.971 | 69 | 29 | 0 | 97 | 165 | 9 | 77 | 2.68e-21 | 92.0 |
MS.gene018922.t1 | AT4G38000 | 64.286 | 56 | 19 | 1 | 111 | 166 | 40 | 94 | 9.23e-21 | 91.7 |
MS.gene018922.t1 | AT4G21040 | 63.462 | 52 | 19 | 0 | 114 | 165 | 27 | 78 | 1.76e-18 | 84.7 |
MS.gene018922.t1 | AT4G21080 | 61.538 | 52 | 20 | 0 | 114 | 165 | 27 | 78 | 1.06e-17 | 82.8 |
MS.gene018922.t1 | AT4G21030 | 59.091 | 44 | 18 | 0 | 114 | 157 | 23 | 66 | 1.53e-11 | 63.9 |
Find 101 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACACATCCATTTCTTTGTTT+TGG | 0.257358 | 3.1:+28178954 | None:intergenic |
GCAAGGCATGTCAAAGATAT+TGG | 0.258763 | 3.1:-28179625 | MS.gene018922:CDS |
TCTCAATTCTTCGGAGAAAA+TGG | 0.261398 | 3.1:-28179378 | MS.gene018922:CDS |
GAATAGGGGTGGTATGATTA+AGG | 0.274373 | 3.1:-28178841 | MS.gene018922:CDS |
TCAGCATCTTTATCTGCTTC+AGG | 0.276517 | 3.1:+28179932 | None:intergenic |
TGTCACAGTTTCAAAGTCTA+TGG | 0.284931 | 3.1:-28179306 | MS.gene018922:CDS |
AAGCTGCAAAGAGTTCAATT+TGG | 0.294104 | 3.1:-28178893 | MS.gene018922:CDS |
GAACTCTTTGCAGCTTCATT+TGG | 0.306321 | 3.1:+28178900 | None:intergenic |
TTCCCAAGCGTTGGAGATTT+CGG | 0.327194 | 3.1:+28179050 | None:intergenic |
TAAGAATGAAGGTTTGAATA+GGG | 0.329266 | 3.1:-28178856 | MS.gene018922:CDS |
GCAAGAATTGTTTCTCCTAA+TGG | 0.336437 | 3.1:-28179491 | MS.gene018922:CDS |
GCGCCGGAATTCCATGTATA+AGG | 0.337826 | 3.1:+28179191 | None:intergenic |
TCATTACCACAGCAAAATAA+TGG | 0.365655 | 3.1:-28179254 | MS.gene018922:CDS |
AGCTGCAAAGAGTTCAATTT+GGG | 0.368742 | 3.1:-28178892 | MS.gene018922:CDS |
TTAAGAATGAAGGTTTGAAT+AGG | 0.377391 | 3.1:-28178857 | MS.gene018922:CDS |
TGAAGATGATGAGTACCATT+AGG | 0.379458 | 3.1:+28179476 | None:intergenic |
GTGATTCTTCTGTTTGCAAA+TGG | 0.382048 | 3.1:+28178976 | None:intergenic |
TTCTTGATCTCTGCGGCATC+TGG | 0.383443 | 3.1:+28179884 | None:intergenic |
AATGGTAGAGTCCTCAGCTT+TGG | 0.387317 | 3.1:-28179440 | MS.gene018922:CDS |
GAGTAGACCTTGGAGTTGTC+GGG | 0.390817 | 3.1:+28179072 | None:intergenic |
TGGCCTTATACATGGAATTC+CGG | 0.391224 | 3.1:-28179194 | MS.gene018922:CDS |
GGAGTAGACCTTGGAGTTGT+CGG | 0.407777 | 3.1:+28179071 | None:intergenic |
TCTTGAGCGTTGTTGTTGTT+TGG | 0.409763 | 3.1:+28179758 | None:intergenic |
AACCAAGGAACATTCCAAAA+AGG | 0.412700 | 3.1:+28179110 | None:intergenic |
GCGCTGTTGCAGCGTGGACA+CGG | 0.414640 | 3.1:+28179704 | None:intergenic |
AGAAATGTTCCGGTCGGTGC+AGG | 0.415448 | 3.1:-28179584 | MS.gene018922:CDS |
GTCAAATGATCTCAATTCTT+CGG | 0.423186 | 3.1:-28179387 | MS.gene018922:CDS |
TCAAACCTCTCCAATGTTGA+TGG | 0.423970 | 3.1:-28178784 | MS.gene018922:CDS |
ATGGTAGAGTCCTCAGCTTT+GGG | 0.430451 | 3.1:-28179439 | MS.gene018922:CDS |
GAATCACCAAAACAAAGAAA+TGG | 0.432133 | 3.1:-28178960 | MS.gene018922:CDS |
TTCTTATTTAAGAGTTCTCA+TGG | 0.441058 | 3.1:+28178727 | None:intergenic |
GGGAAGAAGATTCTTTGTCC+TGG | 0.444941 | 3.1:-28181389 | MS.gene018922:CDS |
CATGTATGACTAGTGCTCCT+TGG | 0.447113 | 3.1:-28179214 | MS.gene018922:CDS |
TGGAACCATGAGAAATGTTC+CGG | 0.449214 | 3.1:-28179594 | MS.gene018922:CDS |
ACACTTGGAATTAAGAATGA+AGG | 0.464706 | 3.1:-28178867 | MS.gene018922:CDS |
TTCCTTCTCCCTGCACCGAC+CGG | 0.469734 | 3.1:+28179575 | None:intergenic |
ATCTCTGCGGCATCTGGTGG+AGG | 0.473653 | 3.1:+28179890 | None:intergenic |
CTTAACGACACTCGAAATAA+CGG | 0.475197 | 3.1:-28179353 | MS.gene018922:CDS |
GGAAGAAGATTCTTTGTCCT+GGG | 0.478047 | 3.1:-28181388 | MS.gene018922:CDS |
CTCCGAAATCTCCAACGCTT+GGG | 0.478239 | 3.1:-28179052 | MS.gene018922:CDS |
CTTTGTCCTGGGGAAGGTGA+AGG | 0.481016 | 3.1:-28181377 | MS.gene018922:CDS |
AGTGATCTAGCTAAAGCTGC+AGG | 0.482293 | 3.1:+28178756 | None:intergenic |
CCACAAACTTTGTGTCCTCC+AGG | 0.482373 | 3.1:-28179158 | MS.gene018922:CDS |
TTCCGGTCGGTGCAGGGAGA+AGG | 0.485518 | 3.1:-28179577 | MS.gene018922:CDS |
AACAATTCAGCAGCAACATT+GGG | 0.489579 | 3.1:-28179854 | MS.gene018922:CDS |
CTCGAGTGTTTCCCAAGCGT+TGG | 0.495617 | 3.1:+28179041 | None:intergenic |
TAAAATGACATGGGAAATCC+TGG | 0.496063 | 3.1:+28179140 | None:intergenic |
GTGCTCCTTGGCCTTATACA+TGG | 0.498856 | 3.1:-28179202 | MS.gene018922:CDS |
CCTGGAGGACACAAAGTTTG+TGG | 0.502884 | 3.1:+28179158 | None:intergenic |
ACTCCGAAATCTCCAACGCT+TGG | 0.504756 | 3.1:-28179053 | MS.gene018922:CDS |
AGTTCAATTTGGGAAACACT+TGG | 0.509045 | 3.1:-28178882 | MS.gene018922:CDS |
TTGATCTCTGCGGCATCTGG+TGG | 0.510926 | 3.1:+28179887 | None:intergenic |
TAGAGTCCTCAGCTTTGGGT+TGG | 0.513593 | 3.1:-28179435 | MS.gene018922:CDS |
CGCTGTTGCAGCGTGGACAC+GGG | 0.514091 | 3.1:+28179705 | None:intergenic |
TGTCAAAGATATTGGACTGC+AGG | 0.517622 | 3.1:-28179617 | MS.gene018922:CDS |
GGACACGGGAGTAATTTGTC+TGG | 0.517983 | 3.1:+28179719 | None:intergenic |
GGTGAAGGTCTTATCACTGC+TGG | 0.522409 | 3.1:-28181362 | MS.gene018922:CDS |
CAACAATTCAGCAGCAACAT+TGG | 0.525068 | 3.1:-28179855 | MS.gene018922:CDS |
CTTCAAAATTTGAAAACCAA+TGG | 0.530626 | 3.1:-28179458 | MS.gene018922:CDS |
GAAGTTTCTTCATCTATGGA+AGG | 0.537934 | 3.1:+28179812 | None:intergenic |
GACATTGAATCATAGATATG+TGG | 0.538845 | 3.1:+28179407 | None:intergenic |
AAGATTCTTTGTCCTGGGGA+AGG | 0.542784 | 3.1:-28181383 | MS.gene018922:CDS |
AAGAATGAAGGTTTGAATAG+GGG | 0.550009 | 3.1:-28178855 | MS.gene018922:CDS |
AAAGCTGAGGACTCTACCAT+TGG | 0.551075 | 3.1:+28179442 | None:intergenic |
GGACACAAAGTTTGTGGCGA+GGG | 0.554181 | 3.1:+28179164 | None:intergenic |
CAAAGATATTGGACTGCAGG+TGG | 0.561249 | 3.1:-28179614 | MS.gene018922:CDS |
GGAGATTTCGGAGTAGACCT+TGG | 0.566151 | 3.1:+28179062 | None:intergenic |
TTGTGGCGAGGGAATTGCGC+CGG | 0.571745 | 3.1:+28179175 | None:intergenic |
GGAGTATGAGCGGGAAACCA+AGG | 0.573870 | 3.1:+28179095 | None:intergenic |
CAACGCTTGGGAAACACTCG+AGG | 0.576028 | 3.1:-28179040 | MS.gene018922:CDS |
GAATTCCATGTATAAGGCCA+AGG | 0.578932 | 3.1:+28179197 | None:intergenic |
TCAAAGTCTATGGAGGAAAG+TGG | 0.579037 | 3.1:-28179296 | MS.gene018922:CDS |
CAAGGAGCACTAGTCATACA+TGG | 0.583891 | 3.1:+28179215 | None:intergenic |
GCAGGGTTAGCCATCAACAT+TGG | 0.587131 | 3.1:+28178774 | None:intergenic |
AGTAGACCTTGGAGTTGTCG+GGG | 0.589059 | 3.1:+28179073 | None:intergenic |
AGGAGCAGGGTAAAATGACA+TGG | 0.595195 | 3.1:+28179130 | None:intergenic |
ACCGACCGGAACATTTCTCA+TGG | 0.607090 | 3.1:+28179589 | None:intergenic |
AATGAAGGTTTGAATAGGGG+TGG | 0.610382 | 3.1:-28178852 | MS.gene018922:CDS |
GAAATGTTCCGGTCGGTGCA+GGG | 0.612559 | 3.1:-28179583 | MS.gene018922:CDS |
CACAGTTTCAAAGTCTATGG+AGG | 0.616952 | 3.1:-28179303 | MS.gene018922:CDS |
TGGTGAGGAATATGTTTCGC+CGG | 0.624242 | 3.1:-28181342 | MS.gene018922:intron |
TGCATCAAGAGCCTCAGAGA+TGG | 0.626336 | 3.1:+28179514 | None:intergenic |
GTTAGCCATCAACATTGGAG+AGG | 0.627108 | 3.1:+28178779 | None:intergenic |
ATAAGACCTTCACCTTCCCC+AGG | 0.629983 | 3.1:+28181371 | None:intergenic |
GTGATCTAGCTAAAGCTGCA+GGG | 0.636623 | 3.1:+28178757 | None:intergenic |
CTAGTCATACATGGAACTTG+AGG | 0.637687 | 3.1:+28179224 | None:intergenic |
ACCATGAGAAATGTTCCGGT+CGG | 0.637920 | 3.1:-28179590 | MS.gene018922:CDS |
ACATTGGAGAGGTTTGAACA+TGG | 0.639471 | 3.1:+28178790 | None:intergenic |
GAAGAAGATTCTTTGTCCTG+GGG | 0.642296 | 3.1:-28181387 | MS.gene018922:CDS |
AGGTCTTATCACTGCTGGTG+AGG | 0.644456 | 3.1:-28181357 | MS.gene018922:CDS |
GAGCCTCAGAGATGGTGATG+TGG | 0.657067 | 3.1:+28179522 | None:intergenic |
GTAGACCTTGGAGTTGTCGG+GGG | 0.661697 | 3.1:+28179074 | None:intergenic |
AGGACACAAAGTTTGTGGCG+AGG | 0.667462 | 3.1:+28179163 | None:intergenic |
GATGATCCAACCCAAAGCTG+AGG | 0.671324 | 3.1:+28179429 | None:intergenic |
AACGCTTGGGAAACACTCGA+GGG | 0.675892 | 3.1:-28179039 | MS.gene018922:CDS |
GTTGTCGTTCTTGATCTCTG+CGG | 0.679992 | 3.1:+28179877 | None:intergenic |
GGAGCAGGGTAAAATGACAT+GGG | 0.680900 | 3.1:+28179131 | None:intergenic |
TCGCCACATCACCATCTCTG+AGG | 0.699550 | 3.1:-28179525 | MS.gene018922:CDS |
GTGTCCGCGCTGTTGCAGCG+TGG | 0.703298 | 3.1:+28179698 | None:intergenic |
AATGACATGGGAAATCCTGG+AGG | 0.743399 | 3.1:+28179143 | None:intergenic |
GTGTCCACGCTGCAACAGCG+CGG | 0.758797 | 3.1:-28179702 | MS.gene018922:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTGAAAAATATATATTG+AGG | + | chr3.1:28179817-28179836 | None:intergenic | 10.0% |
!!! | GAAATTTTTTTTTGTAAAAA+AGG | + | chr3.1:28179253-28179272 | None:intergenic | 10.0% |
!!! | TAATGATTTTTATATGATTA+AGG | - | chr3.1:28178981-28179000 | MS.gene018922:CDS | 10.0% |
!!! | TTTTTTGATAAATTAAAGTA+TGG | - | chr3.1:28178936-28178955 | MS.gene018922:CDS | 10.0% |
!! | TATTTGTTTGATCTTATTAT+AGG | - | chr3.1:28179135-28179154 | MS.gene018922:CDS | 15.0% |
!!! | TAGTAGTATTTAGATTTTTA+GGG | - | chr3.1:28179330-28179349 | MS.gene018922:CDS | 15.0% |
!!! | TTGATTTATTTTTGATGTTT+TGG | - | chr3.1:28179511-28179530 | MS.gene018922:CDS | 15.0% |
!!! | TTTTAATTTTTACATGAAGT+TGG | - | chr3.1:28179467-28179486 | MS.gene018922:CDS | 15.0% |
!! | AAAAAATAAAAATCAGCATG+TGG | - | chr3.1:28179205-28179224 | MS.gene018922:CDS | 20.0% |
!! | AAACATTGTGTCAAATTAAT+AGG | - | chr3.1:28180202-28180221 | MS.gene018922:intron | 20.0% |
!! | ATATTGTCTCAAATAATTAG+CGG | - | chr3.1:28180124-28180143 | MS.gene018922:intron | 20.0% |
!! | TACAAAAAAAAATTTCCACA+TGG | - | chr3.1:28179257-28179276 | MS.gene018922:CDS | 20.0% |
!!! | GTAGTAGTATTTAGATTTTT+AGG | - | chr3.1:28179329-28179348 | MS.gene018922:CDS | 20.0% |
!!! | TTTTCTGATTAAAGAAATTC+AGG | - | chr3.1:28179373-28179392 | MS.gene018922:CDS | 20.0% |
! | AATTTCAGTCAAATATACTG+AGG | - | chr3.1:28179579-28179598 | MS.gene018922:CDS | 25.0% |
! | CTTCAAAATTTGAAAACCAA+TGG | - | chr3.1:28180701-28180720 | MS.gene018922:intron | 25.0% |
! | TAAGAATGAAGGTTTGAATA+GGG | - | chr3.1:28181303-28181322 | MS.gene018922:intron | 25.0% |
! | TGAAAAAATCATTAACCATG+TGG | + | chr3.1:28179275-28179294 | None:intergenic | 25.0% |
! | TTAAGAATGAAGGTTTGAAT+AGG | - | chr3.1:28181302-28181321 | MS.gene018922:intron | 25.0% |
! | TTCAGATTTGGAAAAATGTT+TGG | - | chr3.1:28180049-28180068 | MS.gene018922:intron | 25.0% |
! | TTTAGTAACTCATATGAGTT+AGG | + | chr3.1:28179868-28179887 | None:intergenic | 25.0% |
!! | ACTACACAGATTTTCAAAAA+GGG | + | chr3.1:28179314-28179333 | None:intergenic | 25.0% |
!! | TACTACACAGATTTTCAAAA+AGG | + | chr3.1:28179315-28179334 | None:intergenic | 25.0% |
!! | TCATCAATTCTCAATGTTTT+AGG | + | chr3.1:28181238-28181257 | None:intergenic | 25.0% |
!!! | TTGTTTGTTGTGGTTTTAAT+CGG | + | chr3.1:28179561-28179580 | None:intergenic | 25.0% |
!!! | TTTTGAAGTTTCTTCATCTA+TGG | + | chr3.1:28180354-28180373 | None:intergenic | 25.0% |
AAGAATGAAGGTTTGAATAG+GGG | - | chr3.1:28181304-28181323 | MS.gene018922:intron | 30.0% | |
ACAAGAAGAACATCAAGAAA+AGG | + | chr3.1:28179954-28179973 | None:intergenic | 30.0% | |
ACACTTGGAATTAAGAATGA+AGG | - | chr3.1:28181292-28181311 | MS.gene018922:intron | 30.0% | |
AGAAGAAAAAGAAACAGAGA+AGG | - | chr3.1:28178907-28178926 | MS.gene018922:CDS | 30.0% | |
ATCATTAGCATCTACAATTG+CGG | + | chr3.1:28178968-28178987 | None:intergenic | 30.0% | |
CTGTTTCCAAATCTATGTTT+CGG | + | chr3.1:28179429-28179448 | None:intergenic | 30.0% | |
GAATCACCAAAACAAAGAAA+TGG | - | chr3.1:28181199-28181218 | MS.gene018922:intron | 30.0% | |
GAATTATGTACTTATGCTCT+TGG | - | chr3.1:28180009-28180028 | MS.gene018922:intron | 30.0% | |
GACATTGAATCATAGATATG+TGG | + | chr3.1:28180755-28180774 | None:intergenic | 30.0% | |
GTCAAATGATCTCAATTCTT+CGG | - | chr3.1:28180772-28180791 | MS.gene018922:intron | 30.0% | |
TCATTACCACAGCAAAATAA+TGG | - | chr3.1:28180905-28180924 | MS.gene018922:intron | 30.0% | |
TCCCAAAAAGCTTAATTTCA+GGG | + | chr3.1:28178754-28178773 | None:intergenic | 30.0% | |
TTACTTCCGAAACATAGATT+TGG | - | chr3.1:28179420-28179439 | MS.gene018922:CDS | 30.0% | |
TTCAACTATATACTGCTCAT+AGG | + | chr3.1:28179710-28179729 | None:intergenic | 30.0% | |
TTCCCAAAAAGCTTAATTTC+AGG | + | chr3.1:28178755-28178774 | None:intergenic | 30.0% | |
! | ACCCTGAAATTAAGCTTTTT+GGG | - | chr3.1:28178750-28178769 | MS.gene018922:CDS | 30.0% |
! | GCTTTTCAATCAAAGAAAGA+TGG | - | chr3.1:28181340-28181359 | MS.gene018922:intron | 30.0% |
! | TGAATCACTTTGTTCGTTTT+CGG | + | chr3.1:28180378-28180397 | None:intergenic | 30.0% |
! | TTGACTGAAATTGTTTGTTG+TGG | + | chr3.1:28179571-28179590 | None:intergenic | 30.0% |
!! | ACACATCCATTTCTTTGTTT+TGG | + | chr3.1:28181208-28181227 | None:intergenic | 30.0% |
!! | ATGAAACCATTATTTTGCTG+TGG | + | chr3.1:28180914-28180933 | None:intergenic | 30.0% |
AACAATTCAGCAGCAACATT+GGG | - | chr3.1:28180305-28180324 | MS.gene018922:intron | 35.0% | |
AACCAAGGAACATTCCAAAA+AGG | + | chr3.1:28181052-28181071 | None:intergenic | 35.0% | |
AAGCTGCAAAGAGTTCAATT+TGG | - | chr3.1:28181266-28181285 | MS.gene018922:intron | 35.0% | |
ACTATATACTGCTCATAGGA+AGG | + | chr3.1:28179706-28179725 | None:intergenic | 35.0% | |
AGCTGCAAAGAGTTCAATTT+GGG | - | chr3.1:28181267-28181286 | MS.gene018922:intron | 35.0% | |
AGTTCAATTTGGGAAACACT+TGG | - | chr3.1:28181277-28181296 | MS.gene018922:intron | 35.0% | |
ATCAGCATGTGGTAATTGAT+TGG | - | chr3.1:28179216-28179235 | MS.gene018922:CDS | 35.0% | |
CAGGACTAATACTTCAGATT+TGG | - | chr3.1:28180037-28180056 | MS.gene018922:intron | 35.0% | |
CTTAACGACACTCGAAATAA+CGG | - | chr3.1:28180806-28180825 | MS.gene018922:intron | 35.0% | |
GAAGTTTCTTCATCTATGGA+AGG | + | chr3.1:28180350-28180369 | None:intergenic | 35.0% | |
GATGTAGAAGAAGAAACAGA+TGG | - | chr3.1:28178851-28178870 | MS.gene018922:CDS | 35.0% | |
GTGATTCTTCTGTTTGCAAA+TGG | + | chr3.1:28181186-28181205 | None:intergenic | 35.0% | |
TAAAATGACATGGGAAATCC+TGG | + | chr3.1:28181022-28181041 | None:intergenic | 35.0% | |
TCTCAATTCTTCGGAGAAAA+TGG | - | chr3.1:28180781-28180800 | MS.gene018922:intron | 35.0% | |
TGAAGATGATGAGTACCATT+AGG | + | chr3.1:28180686-28180705 | None:intergenic | 35.0% | |
TGTCACAGTTTCAAAGTCTA+TGG | - | chr3.1:28180853-28180872 | MS.gene018922:intron | 35.0% | |
! | GACCCTGAAATTAAGCTTTT+TGG | - | chr3.1:28178749-28178768 | MS.gene018922:CDS | 35.0% |
! | GCAAGAATTGTTTCTCCTAA+TGG | - | chr3.1:28180668-28180687 | MS.gene018922:intron | 35.0% |
!!! | TCATCTATGGAAGGTGTTTT+CGG | + | chr3.1:28180341-28180360 | None:intergenic | 35.0% |
AATGAAGGTTTGAATAGGGG+TGG | - | chr3.1:28181307-28181326 | MS.gene018922:intron | 40.0% | |
ACATTGGAGAGGTTTGAACA+TGG | + | chr3.1:28181372-28181391 | None:intergenic | 40.0% | |
ACTTATGCTCTTGGATATGC+AGG | - | chr3.1:28180018-28180037 | MS.gene018922:intron | 40.0% | |
CAACAATTCAGCAGCAACAT+TGG | - | chr3.1:28180304-28180323 | MS.gene018922:intron | 40.0% | |
CACAGTTTCAAAGTCTATGG+AGG | - | chr3.1:28180856-28180875 | MS.gene018922:intron | 40.0% | |
CTAGTCATACATGGAACTTG+AGG | + | chr3.1:28180938-28180957 | None:intergenic | 40.0% | |
GAACATTCCAAAAAGGAGCA+GGG | + | chr3.1:28181045-28181064 | None:intergenic | 40.0% | |
GAACTCTTTGCAGCTTCATT+TGG | + | chr3.1:28181262-28181281 | None:intergenic | 40.0% | |
GAAGAAGATTCTTTGTCCTG+GGG | - | chr3.1:28178772-28178791 | MS.gene018922:CDS | 40.0% | |
GAATAGGGGTGGTATGATTA+AGG | - | chr3.1:28181318-28181337 | MS.gene018922:intron | 40.0% | |
GAATTCCATGTATAAGGCCA+AGG | + | chr3.1:28180965-28180984 | None:intergenic | 40.0% | |
GCAAGGCATGTCAAAGATAT+TGG | - | chr3.1:28180534-28180553 | MS.gene018922:intron | 40.0% | |
GGAAGAAGATTCTTTGTCCT+GGG | - | chr3.1:28178771-28178790 | MS.gene018922:CDS | 40.0% | |
GTACATGTTTAGTATCACCG+TGG | + | chr3.1:28179081-28179100 | None:intergenic | 40.0% | |
GTGCATGTCTGATATTACAG+TGG | - | chr3.1:28179026-28179045 | MS.gene018922:CDS | 40.0% | |
TATATACTGCGACGAATCCA+CGG | - | chr3.1:28179061-28179080 | MS.gene018922:CDS | 40.0% | |
TCAAACCTCTCCAATGTTGA+TGG | - | chr3.1:28181375-28181394 | MS.gene018922:CDS | 40.0% | |
TCAAAGTCTATGGAGGAAAG+TGG | - | chr3.1:28180863-28180882 | MS.gene018922:intron | 40.0% | |
TCAGCATCTTTATCTGCTTC+AGG | + | chr3.1:28180230-28180249 | None:intergenic | 40.0% | |
TGGAACCATGAGAAATGTTC+CGG | - | chr3.1:28180565-28180584 | MS.gene018922:intron | 40.0% | |
TGTCAAAGATATTGGACTGC+AGG | - | chr3.1:28180542-28180561 | MS.gene018922:intron | 40.0% | |
! | AACTATTGTATGTGTCGCTG+TGG | + | chr3.1:28180090-28180109 | None:intergenic | 40.0% |
! | CATTTTACCCTGCTCCTTTT+TGG | - | chr3.1:28181035-28181054 | MS.gene018922:intron | 40.0% |
! | TCTTGAGCGTTGTTGTTGTT+TGG | + | chr3.1:28180404-28180423 | None:intergenic | 40.0% |
!! | TGGCCTTATACATGGAATTC+CGG | - | chr3.1:28180965-28180984 | MS.gene018922:intron | 40.0% |
!!! | CATCTATGGAAGGTGTTTTC+GGG | + | chr3.1:28180340-28180359 | None:intergenic | 40.0% |
!!! | CTCCTTTTTGGAATGTTCCT+TGG | - | chr3.1:28181047-28181066 | MS.gene018922:intron | 40.0% |
AAAGCTGAGGACTCTACCAT+TGG | + | chr3.1:28180720-28180739 | None:intergenic | 45.0% | |
AAGATTCTTTGTCCTGGGGA+AGG | - | chr3.1:28178776-28178795 | MS.gene018922:CDS | 45.0% | |
AATGACATGGGAAATCCTGG+AGG | + | chr3.1:28181019-28181038 | None:intergenic | 45.0% | |
AATGGTAGAGTCCTCAGCTT+TGG | - | chr3.1:28180719-28180738 | MS.gene018922:intron | 45.0% | |
ACCATGAGAAATGTTCCGGT+CGG | - | chr3.1:28180569-28180588 | MS.gene018922:intron | 45.0% | |
AGGAGCAGGGTAAAATGACA+TGG | + | chr3.1:28181032-28181051 | None:intergenic | 45.0% | |
AGTGATCTAGCTAAAGCTGC+AGG | + | chr3.1:28181406-28181425 | None:intergenic | 45.0% | |
ATGGTAGAGTCCTCAGCTTT+GGG | - | chr3.1:28180720-28180739 | MS.gene018922:intron | 45.0% | |
CAAAGATATTGGACTGCAGG+TGG | - | chr3.1:28180545-28180564 | MS.gene018922:intron | 45.0% | |
CATGCCTTGCAAAAATAGCG+CGG | + | chr3.1:28180524-28180543 | None:intergenic | 45.0% | |
CATGTATGACTAGTGCTCCT+TGG | - | chr3.1:28180945-28180964 | MS.gene018922:intron | 45.0% | |
GGAACATTCCAAAAAGGAGC+AGG | + | chr3.1:28181046-28181065 | None:intergenic | 45.0% | |
GGAGCAGGGTAAAATGACAT+GGG | + | chr3.1:28181031-28181050 | None:intergenic | 45.0% | |
GGGAAGAAGATTCTTTGTCC+TGG | - | chr3.1:28178770-28178789 | MS.gene018922:CDS | 45.0% | |
GTCAAATATACTGAGGCAGC+AGG | - | chr3.1:28179648-28179667 | MS.gene018922:CDS | 45.0% | |
GTGATCTAGCTAAAGCTGCA+GGG | + | chr3.1:28181405-28181424 | None:intergenic | 45.0% | |
GTTAGCCATCAACATTGGAG+AGG | + | chr3.1:28181383-28181402 | None:intergenic | 45.0% | |
GTTGTCGTTCTTGATCTCTG+CGG | + | chr3.1:28180285-28180304 | None:intergenic | 45.0% | |
TGGTGAGGAATATGTTTCGC+CGG | - | chr3.1:28178817-28178836 | MS.gene018922:CDS | 45.0% | |
!! | CAAGGAGCACTAGTCATACA+TGG | + | chr3.1:28180947-28180966 | None:intergenic | 45.0% |
!! | TTCCCAAGCGTTGGAGATTT+CGG | + | chr3.1:28181112-28181131 | None:intergenic | 45.0% |
AACGCTTGGGAAACACTCGA+GGG | - | chr3.1:28181120-28181139 | MS.gene018922:intron | 50.0% | |
ACCGACCGGAACATTTCTCA+TGG | + | chr3.1:28180573-28180592 | None:intergenic | 50.0% | |
ACTCCGAAATCTCCAACGCT+TGG | - | chr3.1:28181106-28181125 | MS.gene018922:intron | 50.0% | |
AGGACACAAAGTTTGTGGCG+AGG | + | chr3.1:28180999-28181018 | None:intergenic | 50.0% | |
AGTAGACCTTGGAGTTGTCG+GGG | + | chr3.1:28181089-28181108 | None:intergenic | 50.0% | |
ATAAGACCTTCACCTTCCCC+AGG | + | chr3.1:28178791-28178810 | None:intergenic | 50.0% | |
CCACAAACTTTGTGTCCTCC+AGG | - | chr3.1:28181001-28181020 | MS.gene018922:intron | 50.0% | |
CCTGGAGGACACAAAGTTTG+TGG | + | chr3.1:28181004-28181023 | None:intergenic | 50.0% | |
CTCCGAAATCTCCAACGCTT+GGG | - | chr3.1:28181107-28181126 | MS.gene018922:intron | 50.0% | |
GAGTAGACCTTGGAGTTGTC+GGG | + | chr3.1:28181090-28181109 | None:intergenic | 50.0% | |
GATGATCCAACCCAAAGCTG+AGG | + | chr3.1:28180733-28180752 | None:intergenic | 50.0% | |
GCGCCGGAATTCCATGTATA+AGG | + | chr3.1:28180971-28180990 | None:intergenic | 50.0% | |
GGACACAAAGTTTGTGGCGA+GGG | + | chr3.1:28180998-28181017 | None:intergenic | 50.0% | |
GGAGATTTCGGAGTAGACCT+TGG | + | chr3.1:28181100-28181119 | None:intergenic | 50.0% | |
GGAGTAGACCTTGGAGTTGT+CGG | + | chr3.1:28181091-28181110 | None:intergenic | 50.0% | |
TGAGGAATATGTTTCGCCGG+TGG | - | chr3.1:28178820-28178839 | MS.gene018922:CDS | 50.0% | |
TGCATCAAGAGCCTCAGAGA+TGG | + | chr3.1:28180648-28180667 | None:intergenic | 50.0% | |
TTCTTGATCTCTGCGGCATC+TGG | + | chr3.1:28180278-28180297 | None:intergenic | 50.0% | |
! | AGGTCTTATCACTGCTGGTG+AGG | - | chr3.1:28178802-28178821 | MS.gene018922:CDS | 50.0% |
! | GGACACGGGAGTAATTTGTC+TGG | + | chr3.1:28180443-28180462 | None:intergenic | 50.0% |
! | GGTGAAGGTCTTATCACTGC+TGG | - | chr3.1:28178797-28178816 | MS.gene018922:CDS | 50.0% |
!! | GCAGGGTTAGCCATCAACAT+TGG | + | chr3.1:28181388-28181407 | None:intergenic | 50.0% |
!! | GTGCTCCTTGGCCTTATACA+TGG | - | chr3.1:28180957-28180976 | MS.gene018922:intron | 50.0% |
!! | TAGAGTCCTCAGCTTTGGGT+TGG | - | chr3.1:28180724-28180743 | MS.gene018922:intron | 50.0% |
!!! | TCAGCCGCGCTATTTTTGCA+AGG | - | chr3.1:28180517-28180536 | MS.gene018922:intron | 50.0% |
AGAAATGTTCCGGTCGGTGC+AGG | - | chr3.1:28180575-28180594 | MS.gene018922:intron | 55.0% | |
ATACTCCCCCGACAACTCCA+AGG | - | chr3.1:28181080-28181099 | MS.gene018922:intron | 55.0% | |
CAACGCTTGGGAAACACTCG+AGG | - | chr3.1:28181119-28181138 | MS.gene018922:intron | 55.0% | |
CTCGAGTGTTTCCCAAGCGT+TGG | + | chr3.1:28181121-28181140 | None:intergenic | 55.0% | |
CTTTGTCCTGGGGAAGGTGA+AGG | - | chr3.1:28178782-28178801 | MS.gene018922:CDS | 55.0% | |
GAAATGTTCCGGTCGGTGCA+GGG | - | chr3.1:28180576-28180595 | MS.gene018922:intron | 55.0% | |
GGAATATGTTTCGCCGGTGG+CGG | - | chr3.1:28178823-28178842 | MS.gene018922:CDS | 55.0% | |
GGAGTATGAGCGGGAAACCA+AGG | + | chr3.1:28181067-28181086 | None:intergenic | 55.0% | |
GTAGACCTTGGAGTTGTCGG+GGG | + | chr3.1:28181088-28181107 | None:intergenic | 55.0% | |
TCGCCACATCACCATCTCTG+AGG | - | chr3.1:28180634-28180653 | MS.gene018922:intron | 55.0% | |
TTGATCTCTGCGGCATCTGG+TGG | + | chr3.1:28180275-28180294 | None:intergenic | 55.0% | |
! | AGTTGTCGGGGGAGTATGAG+CGG | + | chr3.1:28181077-28181096 | None:intergenic | 55.0% |
! | GAGCCTCAGAGATGGTGATG+TGG | + | chr3.1:28180640-28180659 | None:intergenic | 55.0% |
ATCTCTGCGGCATCTGGTGG+AGG | + | chr3.1:28180272-28180291 | None:intergenic | 60.0% | |
TCTACATCCATCGCCGCCAC+CGG | + | chr3.1:28178839-28178858 | None:intergenic | 60.0% | |
TTGTGGCGAGGGAATTGCGC+CGG | + | chr3.1:28180987-28181006 | None:intergenic | 60.0% | |
! | GTTGTCGGGGGAGTATGAGC+GGG | + | chr3.1:28181076-28181095 | None:intergenic | 60.0% |
! | TTCCTTCTCCCTGCACCGAC+CGG | + | chr3.1:28180587-28180606 | None:intergenic | 60.0% |
CGCTGTTGCAGCGTGGACAC+GGG | + | chr3.1:28180457-28180476 | None:intergenic | 65.0% | |
GCGCTGTTGCAGCGTGGACA+CGG | + | chr3.1:28180458-28180477 | None:intergenic | 65.0% | |
GTGTCCACGCTGCAACAGCG+CGG | - | chr3.1:28180457-28180476 | MS.gene018922:intron | 65.0% | |
TTCCGGTCGGTGCAGGGAGA+AGG | - | chr3.1:28180582-28180601 | MS.gene018922:intron | 65.0% | |
GTGTCCGCGCTGTTGCAGCG+TGG | + | chr3.1:28180464-28180483 | None:intergenic | 70.0% | |
! | TGTTTCGCCGGTGGCGGCGA+TGG | - | chr3.1:28178829-28178848 | MS.gene018922:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 28178734 | 28181447 | 28178734 | ID=MS.gene018922 |
chr3.1 | mRNA | 28178734 | 28181447 | 28178734 | ID=MS.gene018922.t1;Parent=MS.gene018922 |
chr3.1 | exon | 28181343 | 28181447 | 28181343 | ID=MS.gene018922.t1.exon1;Parent=MS.gene018922.t1 |
chr3.1 | CDS | 28181343 | 28181447 | 28181343 | ID=cds.MS.gene018922.t1;Parent=MS.gene018922.t1 |
chr3.1 | exon | 28178734 | 28179957 | 28178734 | ID=MS.gene018922.t1.exon2;Parent=MS.gene018922.t1 |
chr3.1 | CDS | 28178734 | 28179957 | 28178734 | ID=cds.MS.gene018922.t1;Parent=MS.gene018922.t1 |
Gene Sequence |
Protein sequence |