Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018929.t1 | KEH33323.1 | 89 | 483 | 38 | 3 | 1 | 482 | 1 | 469 | 1.30E-243 | 852 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018929.t1 | Q10EL1 | 52.5 | 387 | 153 | 7 | 38 | 404 | 63 | 438 | 3.2e-97 | 357.1 |
| MS.gene018929.t1 | Q10EL1 | 49.0 | 49 | 25 | 0 | 433 | 481 | 649 | 697 | 1.2e-06 | 56.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018929.t1 | A0A072UW95 | 89.0 | 483 | 38 | 3 | 1 | 482 | 1 | 469 | 9.4e-244 | 852.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene018929.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018929.t1 | MTR_3g435590 | 89.027 | 483 | 38 | 3 | 1 | 482 | 1 | 469 | 0.0 | 877 |
| MS.gene018929.t1 | MTR_3g029590 | 65.927 | 496 | 103 | 6 | 1 | 431 | 1 | 495 | 0.0 | 550 |
| MS.gene018929.t1 | MTR_3g029590 | 66.071 | 56 | 18 | 1 | 427 | 481 | 626 | 681 | 7.55e-15 | 77.8 |
| MS.gene018929.t1 | MTR_3g435680 | 61.124 | 427 | 93 | 11 | 94 | 482 | 5 | 396 | 3.06e-161 | 462 |
| MS.gene018929.t1 | MTR_7g092070 | 57.975 | 395 | 140 | 8 | 31 | 404 | 33 | 422 | 4.29e-138 | 415 |
| MS.gene018929.t1 | MTR_0728s0020 | 46.022 | 465 | 170 | 8 | 29 | 425 | 15 | 466 | 2.33e-127 | 384 |
| MS.gene018929.t1 | MTR_1g050438 | 46.004 | 463 | 169 | 8 | 31 | 425 | 1 | 450 | 4.99e-127 | 382 |
| MS.gene018929.t1 | MTR_5g082830 | 48.930 | 327 | 142 | 4 | 43 | 366 | 28 | 332 | 1.55e-100 | 316 |
| MS.gene018929.t1 | MTR_1g075890 | 48.308 | 325 | 158 | 5 | 42 | 366 | 30 | 344 | 2.86e-90 | 288 |
| MS.gene018929.t1 | MTR_5g071070 | 45.455 | 363 | 170 | 6 | 42 | 396 | 32 | 374 | 5.97e-90 | 289 |
| MS.gene018929.t1 | MTR_3g070880 | 43.750 | 320 | 127 | 3 | 43 | 362 | 8 | 274 | 6.16e-86 | 273 |
| MS.gene018929.t1 | MTR_5g071070 | 47.588 | 311 | 136 | 5 | 94 | 396 | 1 | 292 | 3.78e-81 | 264 |
| MS.gene018929.t1 | MTR_3g464260 | 38.415 | 328 | 152 | 5 | 31 | 358 | 11 | 288 | 5.70e-62 | 211 |
| MS.gene018929.t1 | MTR_3g464280 | 35.714 | 308 | 129 | 5 | 47 | 354 | 19 | 257 | 7.44e-49 | 175 |
| MS.gene018929.t1 | MTR_8g102100 | 60.833 | 120 | 46 | 1 | 247 | 365 | 77 | 196 | 7.00e-48 | 169 |
| MS.gene018929.t1 | MTR_6g090380 | 65.421 | 107 | 37 | 0 | 247 | 353 | 99 | 205 | 9.17e-48 | 169 |
| MS.gene018929.t1 | MTR_3g103960 | 53.237 | 139 | 62 | 3 | 241 | 376 | 43 | 181 | 2.90e-45 | 159 |
| MS.gene018929.t1 | MTR_2g090605 | 62.136 | 103 | 39 | 0 | 251 | 353 | 77 | 179 | 1.01e-41 | 154 |
| MS.gene018929.t1 | MTR_4g078660 | 48.201 | 139 | 66 | 2 | 221 | 353 | 24 | 162 | 1.15e-41 | 151 |
| MS.gene018929.t1 | MTR_3g464290 | 63.542 | 96 | 34 | 1 | 230 | 324 | 79 | 174 | 3.51e-36 | 140 |
| MS.gene018929.t1 | MTR_3g464270 | 50.833 | 120 | 58 | 1 | 250 | 368 | 8 | 127 | 1.62e-35 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018929.t1 | AT2G41900 | 53.465 | 404 | 168 | 5 | 2 | 390 | 3 | 401 | 1.39e-130 | 395 |
| MS.gene018929.t1 | AT5G12850 | 51.302 | 384 | 144 | 9 | 41 | 394 | 38 | 408 | 2.15e-116 | 358 |
| MS.gene018929.t1 | AT3G55980 | 46.273 | 322 | 144 | 3 | 45 | 364 | 30 | 324 | 4.23e-93 | 294 |
| MS.gene018929.t1 | AT5G58620 | 45.593 | 329 | 160 | 5 | 42 | 366 | 11 | 324 | 7.56e-93 | 294 |
| MS.gene018929.t1 | AT3G55980 | 46.273 | 322 | 144 | 3 | 45 | 364 | 97 | 391 | 2.50e-92 | 294 |
| MS.gene018929.t1 | AT2G40140 | 42.893 | 394 | 186 | 10 | 41 | 430 | 29 | 387 | 7.66e-92 | 291 |
| MS.gene018929.t1 | AT2G40140 | 42.893 | 394 | 186 | 10 | 41 | 430 | 29 | 387 | 7.66e-92 | 291 |
| MS.gene018929.t1 | AT5G07500 | 60.156 | 128 | 51 | 0 | 233 | 360 | 34 | 161 | 2.11e-51 | 175 |
| MS.gene018929.t1 | AT2G25900 | 63.551 | 107 | 39 | 0 | 247 | 353 | 86 | 192 | 1.14e-47 | 167 |
| MS.gene018929.t1 | AT2G25900 | 63.551 | 107 | 39 | 0 | 247 | 353 | 86 | 192 | 1.14e-47 | 167 |
| MS.gene018929.t1 | AT4G29190 | 56.391 | 133 | 57 | 1 | 225 | 357 | 54 | 185 | 2.10e-46 | 165 |
| MS.gene018929.t1 | AT2G19810 | 56.589 | 129 | 55 | 1 | 225 | 353 | 53 | 180 | 4.12e-45 | 162 |
| MS.gene018929.t1 | AT1G03790 | 53.521 | 142 | 58 | 3 | 229 | 366 | 64 | 201 | 2.73e-42 | 155 |
| MS.gene018929.t1 | AT5G44260 | 55.556 | 126 | 51 | 2 | 229 | 353 | 42 | 163 | 9.13e-41 | 150 |
Find 109 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTGTAGGTGAACTTTCT+AGG | 0.217092 | 3.1:+28362328 | None:intergenic |
| TCTCCACCTTCATCTGCTTT+AGG | 0.260645 | 3.1:-28363141 | MS.gene018929:CDS |
| AAACCTGATTGGTTCGTAAA+TGG | 0.274231 | 3.1:-28361857 | MS.gene018929:CDS |
| CAATTCCTATTTCTAAAATC+AGG | 0.292610 | 3.1:+28362295 | None:intergenic |
| TTCTGTCCTCGAGAACAATT+TGG | 0.296380 | 3.1:+28362938 | None:intergenic |
| TTCTCTTGAGGATGGTAAAA+AGG | 0.301619 | 3.1:+28362367 | None:intergenic |
| CTTCCGCTGTCTTGTGAAAA+GGG | 0.344829 | 3.1:-28362583 | MS.gene018929:CDS |
| ACCTGGTGTGTCCGTCAAAA+TGG | 0.347353 | 3.1:-28362970 | MS.gene018929:CDS |
| GCTTCCGCTGTCTTGTGAAA+AGG | 0.357025 | 3.1:-28362584 | MS.gene018929:CDS |
| TATATGCTGTTTCGTATATC+AGG | 0.367270 | 3.1:+28362469 | None:intergenic |
| TATCTTAGTTGACAAGAGAT+TGG | 0.368449 | 3.1:+28361756 | None:intergenic |
| AGCTTATGGGGAACGACAAT+TGG | 0.370548 | 3.1:+28362679 | None:intergenic |
| CGAGGACAGAACCGCTTTGA+TGG | 0.377143 | 3.1:-28362926 | MS.gene018929:CDS |
| CTGTTTCTCACAGCCCTGTC+CGG | 0.377249 | 3.1:-28361939 | MS.gene018929:CDS |
| TATGCAAATGGCCTCTTTGA+TGG | 0.380891 | 3.1:-28361989 | MS.gene018929:CDS |
| TCAGGAATTGATGGATCAAT+TGG | 0.382999 | 3.1:+28362487 | None:intergenic |
| AGATGAATTTCGCATGTATT+CGG | 0.386064 | 3.1:-28362440 | MS.gene018929:CDS |
| TTTCACGATTTCGAGCTTAT+GGG | 0.393900 | 3.1:+28362666 | None:intergenic |
| AGCAGATGCAGCTGATCTAA+TGG | 0.394681 | 3.1:+28362114 | None:intergenic |
| GATTGGACCCAAGATATATC+AGG | 0.394954 | 3.1:+28361773 | None:intergenic |
| TTGAAGAGCCTGATATATCT+TGG | 0.396118 | 3.1:-28361781 | MS.gene018929:CDS |
| TTTCCATTTACGAACCAATC+AGG | 0.402841 | 3.1:+28361854 | None:intergenic |
| ATACTTTCATCTTCAGAGGC+TGG | 0.429494 | 3.1:-28362865 | MS.gene018929:CDS |
| TCTAAGTGGGGATCTCATAC+TGG | 0.434509 | 3.1:-28361881 | MS.gene018929:CDS |
| CACTGAAATGGTACCCGGAC+AGG | 0.437315 | 3.1:+28361925 | None:intergenic |
| ATCTATTGTGTGGATGCTAA+TGG | 0.442376 | 3.1:-28362730 | MS.gene018929:CDS |
| TTCGTAAATGGAAATGACTT+TGG | 0.444455 | 3.1:-28361845 | MS.gene018929:CDS |
| CTCATACTGGTAAACCTGAT+TGG | 0.450604 | 3.1:-28361868 | MS.gene018929:CDS |
| TTTCGTATATCAGGAATTGA+TGG | 0.454148 | 3.1:+28362478 | None:intergenic |
| GCAGCCATGTCCATGACAAT+AGG | 0.459445 | 3.1:+28362091 | None:intergenic |
| GCTGATGAGCCTGTTGATGA+TGG | 0.474997 | 3.1:-28362610 | MS.gene018929:CDS |
| ATCGTGCATACACTCATGAT+TGG | 0.479539 | 3.1:-28362399 | MS.gene018929:CDS |
| AGATACAAAGGCTGTGCAAA+AGG | 0.480808 | 3.1:+28362013 | None:intergenic |
| AACAGACCGACTCACTGAAA+TGG | 0.484349 | 3.1:+28361913 | None:intergenic |
| ATTGTTTCCATGCTGAAAAG+AGG | 0.484399 | 3.1:+28361805 | None:intergenic |
| AGGCTTGTGCGATACTGATC+TGG | 0.489915 | 3.1:+28362217 | None:intergenic |
| CTCCTTCGTGCATTCTCTTG+AGG | 0.491168 | 3.1:+28362355 | None:intergenic |
| CGCACAAGCCTTTGCAAAGA+GGG | 0.495365 | 3.1:-28362205 | MS.gene018929:CDS |
| GGAAGCGAACCATCATCAAC+AGG | 0.501605 | 3.1:+28362601 | None:intergenic |
| CCACCTTCATCTGCTTTAGG+AGG | 0.503254 | 3.1:-28363138 | MS.gene018929:CDS |
| ACAGCTGTGTCGGTAAACTT+TGG | 0.503937 | 3.1:+28362538 | None:intergenic |
| AGAAGCATGTTCAAGTAAGC+TGG | 0.506422 | 3.1:+28363059 | None:intergenic |
| CCTTTGTATCTATATGCAAA+TGG | 0.509335 | 3.1:-28362001 | MS.gene018929:CDS |
| CTGTGCTGCTTCGAGTGGTA+CGG | 0.514258 | 3.1:-28362800 | MS.gene018929:CDS |
| TGTTAACTCCTCGTCTAAGT+GGG | 0.516543 | 3.1:-28361894 | MS.gene018929:CDS |
| TGAAGAGCCTGATATATCTT+GGG | 0.518053 | 3.1:-28361780 | MS.gene018929:CDS |
| AATTCCTATTTCTAAAATCA+GGG | 0.524886 | 3.1:+28362296 | None:intergenic |
| TGTTTCTCACAGCCCTGTCC+GGG | 0.526425 | 3.1:-28361938 | MS.gene018929:CDS |
| GAAATAGGAATTGCAGACGC+GGG | 0.527252 | 3.1:-28362285 | MS.gene018929:CDS |
| TTTGGAGCCACAGGAGAGGA+TGG | 0.530352 | 3.1:+28362556 | None:intergenic |
| CTGTTAACTCCTCGTCTAAG+TGG | 0.534143 | 3.1:-28361895 | MS.gene018929:CDS |
| CGGGTACCATTTCAGTGAGT+CGG | 0.535432 | 3.1:-28361919 | MS.gene018929:CDS |
| CTCATGGAGTATTCGAGACC+TGG | 0.539512 | 3.1:-28362246 | MS.gene018929:CDS |
| AGCTGTAGGTGAACTTTCTA+GGG | 0.540690 | 3.1:+28362329 | None:intergenic |
| TCGGTAAACTTTGGAGCCAC+AGG | 0.542025 | 3.1:+28362547 | None:intergenic |
| AACTAGTACCCTCTTTGCAA+AGG | 0.543250 | 3.1:+28362197 | None:intergenic |
| GCTTATACTTTCATCTTCAG+AGG | 0.545789 | 3.1:-28362869 | MS.gene018929:CDS |
| TAGAATATCAATACTCCCAC+AGG | 0.547853 | 3.1:+28362894 | None:intergenic |
| TGCTCCTATTGTCATGGACA+TGG | 0.553647 | 3.1:-28362095 | MS.gene018929:CDS |
| TTCACGATTTCGAGCTTATG+GGG | 0.556465 | 3.1:+28362667 | None:intergenic |
| ATACTGATCTGGATGTAGCC+AGG | 0.556939 | 3.1:+28362228 | None:intergenic |
| TTCGTGCATTCTCTTGAGGA+TGG | 0.557083 | 3.1:+28362359 | None:intergenic |
| CGACTCACTGAAATGGTACC+CGG | 0.566357 | 3.1:+28361920 | None:intergenic |
| AAAGGCTGTGCAAAAGGTGA+TGG | 0.567762 | 3.1:+28362019 | None:intergenic |
| AGTTACATGAAGTCGGCACC+TGG | 0.570971 | 3.1:-28362987 | MS.gene018929:CDS |
| TGCATCTGCTCCTATTGTCA+TGG | 0.581920 | 3.1:-28362101 | MS.gene018929:CDS |
| CTATTTCTAAAATCAGGGCA+TGG | 0.583052 | 3.1:+28362301 | None:intergenic |
| TTGATGGTGGCAGCATCCTG+TGG | 0.583783 | 3.1:-28362910 | MS.gene018929:CDS |
| AGCAGCACAGTGAAGAGCAG+TGG | 0.584568 | 3.1:+28362813 | None:intergenic |
| AGGGCATGGCACACAGCTGT+AGG | 0.585274 | 3.1:+28362315 | None:intergenic |
| ATTTCGCATGTATTCGGTCA+AGG | 0.587008 | 3.1:-28362434 | MS.gene018929:CDS |
| ACTGAAATGGTACCCGGACA+GGG | 0.589963 | 3.1:+28361926 | None:intergenic |
| GGATGCTAATGGAAACCGTC+CGG | 0.590775 | 3.1:-28362719 | MS.gene018929:CDS |
| TGATGGTGGCAGCATCCTGT+GGG | 0.591002 | 3.1:-28362909 | MS.gene018929:CDS |
| GGGGTCTCCATCCTCTCCTG+TGG | 0.592440 | 3.1:-28362563 | MS.gene018929:CDS |
| GATCTAATGGAAGCATGCGA+TGG | 0.592544 | 3.1:+28362127 | None:intergenic |
| GAACCTCCTAAAGCAGATGA+AGG | 0.597322 | 3.1:+28363135 | None:intergenic |
| GATATGTGTGAATATGCTCA+TGG | 0.598080 | 3.1:-28362262 | MS.gene018929:CDS |
| GGAAGAACAATAACATCCAC+CGG | 0.599918 | 3.1:+28362700 | None:intergenic |
| TTCCGCTGTCTTGTGAAAAG+GGG | 0.600730 | 3.1:-28362582 | MS.gene018929:CDS |
| GCTGCAACGAGCCTTTGTCG+TGG | 0.600822 | 3.1:-28362070 | MS.gene018929:CDS |
| CCATTTGCATATAGATACAA+AGG | 0.602439 | 3.1:+28362001 | None:intergenic |
| TGCATACACTCATGATTGGA+CGG | 0.607703 | 3.1:-28362395 | MS.gene018929:CDS |
| GCCTCGCAGTTACATGAAGT+CGG | 0.617445 | 3.1:-28362994 | MS.gene018929:CDS |
| CCTCCTAAAGCAGATGAAGG+TGG | 0.621591 | 3.1:+28363138 | None:intergenic |
| GGACAGAACCGCTTTGATGG+TGG | 0.626702 | 3.1:-28362923 | MS.gene018929:CDS |
| TTCAGAACTAACAGCTGTGT+CGG | 0.628333 | 3.1:+28362528 | None:intergenic |
| TAATAGCCAAATTGTTCTCG+AGG | 0.633027 | 3.1:-28362944 | MS.gene018929:CDS |
| CTTCACTGTGCTGCTTCGAG+TGG | 0.634753 | 3.1:-28362805 | MS.gene018929:CDS |
| GCTAATTGAAGGATGTGCGG+TGG | 0.636952 | 3.1:-28363198 | None:intergenic |
| GGGTACTAGTTGTAACCGAA+AGG | 0.639928 | 3.1:-28362185 | MS.gene018929:CDS |
| TTGATAGTGAACCACGACAA+AGG | 0.649293 | 3.1:+28362059 | None:intergenic |
| TAAAGCAGATGAAGGTGGAG+AGG | 0.650587 | 3.1:+28363143 | None:intergenic |
| TGTATGCACGATGACAAAGA+AGG | 0.653054 | 3.1:+28362410 | None:intergenic |
| GAACAATAACATCCACCGGA+CGG | 0.659004 | 3.1:+28362704 | None:intergenic |
| TGCTAATGGAAACCGTCCGG+TGG | 0.659107 | 3.1:-28362716 | MS.gene018929:CDS |
| TCGCACAAGCCTTTGCAAAG+AGG | 0.659587 | 3.1:-28362206 | MS.gene018929:CDS |
| AAACTTTGGAGCCACAGGAG+AGG | 0.663839 | 3.1:+28362552 | None:intergenic |
| GTTAACTCCTCGTCTAAGTG+GGG | 0.664476 | 3.1:-28361893 | MS.gene018929:CDS |
| TGGTGCTGACATCTATTGTG+TGG | 0.667410 | 3.1:-28362740 | MS.gene018929:CDS |
| AAATAGGAATTGCAGACGCG+GGG | 0.674949 | 3.1:-28362284 | MS.gene018929:CDS |
| AGAAATAGGAATTGCAGACG+CGG | 0.678930 | 3.1:-28362286 | MS.gene018929:CDS |
| TGTGCTGCTGACCATCAAAG+AGG | 0.681128 | 3.1:+28361978 | None:intergenic |
| TTAGCTAATTGAAGGATGTG+CGG | 0.684464 | 3.1:-28363201 | None:intergenic |
| ATACATGCGAAATTCATCTG+TGG | 0.693580 | 3.1:+28362444 | None:intergenic |
| ATGAGATCCCCACTTAGACG+AGG | 0.708111 | 3.1:+28361886 | None:intergenic |
| GCCGACTTCATGTAACTGCG+AGG | 0.720852 | 3.1:+28362993 | None:intergenic |
| GGATGCTGCCACCATCAAAG+CGG | 0.735185 | 3.1:+28362915 | None:intergenic |
| ATCCTCAAGAGAATGCACGA+AGG | 0.738867 | 3.1:-28362357 | MS.gene018929:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCCTATTTCTAAAATCA+GGG | + | chr3.1:28362653-28362672 | None:intergenic | 20.0% |
| !!! | ATTGGATATTTTTTCTTTTC+TGG | + | chr3.1:28362444-28362463 | None:intergenic | 20.0% |
| !!! | CAATTCCTATTTCTAAAATC+AGG | + | chr3.1:28362654-28362673 | None:intergenic | 25.0% |
| AGATGAATTTCGCATGTATT+CGG | - | chr3.1:28362506-28362525 | MS.gene018929:CDS | 30.0% | |
| CCATTTGCATATAGATACAA+AGG | + | chr3.1:28362948-28362967 | None:intergenic | 30.0% | |
| CCTTTGTATCTATATGCAAA+TGG | - | chr3.1:28362945-28362964 | MS.gene018929:CDS | 30.0% | |
| TTCGTAAATGGAAATGACTT+TGG | - | chr3.1:28363101-28363120 | MS.gene018929:CDS | 30.0% | |
| TTTCGTATATCAGGAATTGA+TGG | + | chr3.1:28362471-28362490 | None:intergenic | 30.0% | |
| ! | CTGGTGTAAATTTTTCTTGT+GGG | - | chr3.1:28362100-28362119 | MS.gene018929:CDS | 30.0% |
| !! | TATATGCTGTTTCGTATATC+AGG | + | chr3.1:28362480-28362499 | None:intergenic | 30.0% |
| ATACATGCGAAATTCATCTG+TGG | + | chr3.1:28362505-28362524 | None:intergenic | 35.0% | |
| ATCTATTGTGTGGATGCTAA+TGG | - | chr3.1:28362216-28362235 | MS.gene018929:CDS | 35.0% | |
| ATTGTTTCCATGCTGAAAAG+AGG | + | chr3.1:28363144-28363163 | None:intergenic | 35.0% | |
| GATATGTGTGAATATGCTCA+TGG | - | chr3.1:28362684-28362703 | MS.gene018929:CDS | 35.0% | |
| GCTTATACTTTCATCTTCAG+AGG | - | chr3.1:28362077-28362096 | MS.gene018929:CDS | 35.0% | |
| TAATAGCCAAATTGTTCTCG+AGG | - | chr3.1:28362002-28362021 | MS.gene018929:CDS | 35.0% | |
| TAGAATATCAATACTCCCAC+AGG | + | chr3.1:28362055-28362074 | None:intergenic | 35.0% | |
| TGAAGAGCCTGATATATCTT+GGG | - | chr3.1:28363166-28363185 | MS.gene018929:CDS | 35.0% | |
| TTCTCTTGAGGATGGTAAAA+AGG | + | chr3.1:28362582-28362601 | None:intergenic | 35.0% | |
| TTGAAGAGCCTGATATATCT+TGG | - | chr3.1:28363165-28363184 | MS.gene018929:CDS | 35.0% | |
| TTTCACGATTTCGAGCTTAT+GGG | + | chr3.1:28362283-28362302 | None:intergenic | 35.0% | |
| TTTCCATTTACGAACCAATC+AGG | + | chr3.1:28363095-28363114 | None:intergenic | 35.0% | |
| ! | AGATATACCTCTTTTCAGCA+TGG | - | chr3.1:28363134-28363153 | MS.gene018929:CDS | 35.0% |
| ! | GCTGGTGTAAATTTTTCTTG+TGG | - | chr3.1:28362099-28362118 | MS.gene018929:CDS | 35.0% |
| ! | GGCTATTATGTCCATTTTGA+CGG | + | chr3.1:28361990-28362009 | None:intergenic | 35.0% |
| ! | TCAGGAATTGATGGATCAAT+TGG | + | chr3.1:28362462-28362481 | None:intergenic | 35.0% |
| ! | TTTTCACGATTTCGAGCTTA+TGG | + | chr3.1:28362284-28362303 | None:intergenic | 35.0% |
| !! | AAACCTGATTGGTTCGTAAA+TGG | - | chr3.1:28363089-28363108 | MS.gene018929:CDS | 35.0% |
| !! | CATGCCCTGATTTTAGAAAT+AGG | - | chr3.1:28362646-28362665 | MS.gene018929:CDS | 35.0% |
| !! | CTATTTCTAAAATCAGGGCA+TGG | + | chr3.1:28362648-28362667 | None:intergenic | 35.0% |
| !! | GTAAAACTGCTTTTATCAGC+TGG | - | chr3.1:28362186-28362205 | MS.gene018929:CDS | 35.0% |
| AACTAGTACCCTCTTTGCAA+AGG | + | chr3.1:28362752-28362771 | None:intergenic | 40.0% | |
| AGAAATAGGAATTGCAGACG+CGG | - | chr3.1:28362660-28362679 | MS.gene018929:CDS | 40.0% | |
| AGATACAAAGGCTGTGCAAA+AGG | + | chr3.1:28362936-28362955 | None:intergenic | 40.0% | |
| AGCTGTAGGTGAACTTTCTA+GGG | + | chr3.1:28362620-28362639 | None:intergenic | 40.0% | |
| ATACTTTCATCTTCAGAGGC+TGG | - | chr3.1:28362081-28362100 | MS.gene018929:CDS | 40.0% | |
| ATCGTGCATACACTCATGAT+TGG | - | chr3.1:28362547-28362566 | MS.gene018929:CDS | 40.0% | |
| ATTTCGCATGTATTCGGTCA+AGG | - | chr3.1:28362512-28362531 | MS.gene018929:CDS | 40.0% | |
| CTCATACTGGTAAACCTGAT+TGG | - | chr3.1:28363078-28363097 | MS.gene018929:CDS | 40.0% | |
| GATTGGACCCAAGATATATC+AGG | + | chr3.1:28363176-28363195 | None:intergenic | 40.0% | |
| GGAAGAACAATAACATCCAC+CGG | + | chr3.1:28362249-28362268 | None:intergenic | 40.0% | |
| TATGCAAATGGCCTCTTTGA+TGG | - | chr3.1:28362957-28362976 | MS.gene018929:CDS | 40.0% | |
| TGCATACACTCATGATTGGA+CGG | - | chr3.1:28362551-28362570 | MS.gene018929:CDS | 40.0% | |
| TGTATGCACGATGACAAAGA+AGG | + | chr3.1:28362539-28362558 | None:intergenic | 40.0% | |
| TGTTAACTCCTCGTCTAAGT+GGG | - | chr3.1:28363052-28363071 | MS.gene018929:CDS | 40.0% | |
| TTCACGATTTCGAGCTTATG+GGG | + | chr3.1:28362282-28362301 | None:intergenic | 40.0% | |
| TTCAGAACTAACAGCTGTGT+CGG | + | chr3.1:28362421-28362440 | None:intergenic | 40.0% | |
| TTCTGTCCTCGAGAACAATT+TGG | + | chr3.1:28362011-28362030 | None:intergenic | 40.0% | |
| ! | AGAAGCATGTTCAAGTAAGC+TGG | + | chr3.1:28361890-28361909 | None:intergenic | 40.0% |
| ! | GTGCAAAAAAGCACACCTTT+CGG | + | chr3.1:28362779-28362798 | None:intergenic | 40.0% |
| !! | TTGATAGTGAACCACGACAA+AGG | + | chr3.1:28362890-28362909 | None:intergenic | 40.0% |
| AAAGGCTGTGCAAAAGGTGA+TGG | + | chr3.1:28362930-28362949 | None:intergenic | 45.0% | |
| AAATAGGAATTGCAGACGCG+GGG | - | chr3.1:28362662-28362681 | MS.gene018929:CDS | 45.0% | |
| AGCAGATGCAGCTGATCTAA+TGG | + | chr3.1:28362835-28362854 | None:intergenic | 45.0% | |
| AGCTTATGGGGAACGACAAT+TGG | + | chr3.1:28362270-28362289 | None:intergenic | 45.0% | |
| ATACTGATCTGGATGTAGCC+AGG | + | chr3.1:28362721-28362740 | None:intergenic | 45.0% | |
| ATCCTCAAGAGAATGCACGA+AGG | - | chr3.1:28362589-28362608 | MS.gene018929:CDS | 45.0% | |
| CAGCTGTAGGTGAACTTTCT+AGG | + | chr3.1:28362621-28362640 | None:intergenic | 45.0% | |
| CTGTTAACTCCTCGTCTAAG+TGG | - | chr3.1:28363051-28363070 | MS.gene018929:CDS | 45.0% | |
| CTTCCGCTGTCTTGTGAAAA+GGG | - | chr3.1:28362363-28362382 | MS.gene018929:CDS | 45.0% | |
| GAAATAGGAATTGCAGACGC+GGG | - | chr3.1:28362661-28362680 | MS.gene018929:CDS | 45.0% | |
| GAACAATAACATCCACCGGA+CGG | + | chr3.1:28362245-28362264 | None:intergenic | 45.0% | |
| GAACCTCCTAAAGCAGATGA+AGG | + | chr3.1:28361814-28361833 | None:intergenic | 45.0% | |
| GGGTACTAGTTGTAACCGAA+AGG | - | chr3.1:28362761-28362780 | MS.gene018929:CDS | 45.0% | |
| GTTAACTCCTCGTCTAAGTG+GGG | - | chr3.1:28363053-28363072 | MS.gene018929:CDS | 45.0% | |
| TAAAGCAGATGAAGGTGGAG+AGG | + | chr3.1:28361806-28361825 | None:intergenic | 45.0% | |
| TCTAAGTGGGGATCTCATAC+TGG | - | chr3.1:28363065-28363084 | MS.gene018929:CDS | 45.0% | |
| TCTCCACCTTCATCTGCTTT+AGG | - | chr3.1:28361805-28361824 | MS.gene018929:CDS | 45.0% | |
| TGCATCTGCTCCTATTGTCA+TGG | - | chr3.1:28362845-28362864 | MS.gene018929:CDS | 45.0% | |
| TGCTCCTATTGTCATGGACA+TGG | - | chr3.1:28362851-28362870 | MS.gene018929:CDS | 45.0% | |
| TTCCGCTGTCTTGTGAAAAG+GGG | - | chr3.1:28362364-28362383 | MS.gene018929:CDS | 45.0% | |
| TTCGTGCATTCTCTTGAGGA+TGG | + | chr3.1:28362590-28362609 | None:intergenic | 45.0% | |
| ! | AACAGACCGACTCACTGAAA+TGG | + | chr3.1:28363036-28363055 | None:intergenic | 45.0% |
| ! | ACAGCTGTGTCGGTAAACTT+TGG | + | chr3.1:28362411-28362430 | None:intergenic | 45.0% |
| ! | GATCTAATGGAAGCATGCGA+TGG | + | chr3.1:28362822-28362841 | None:intergenic | 45.0% |
| !! | TGGTGCTGACATCTATTGTG+TGG | - | chr3.1:28362206-28362225 | MS.gene018929:CDS | 45.0% |
| ACCTGGTGTGTCCGTCAAAA+TGG | - | chr3.1:28361976-28361995 | MS.gene018929:CDS | 50.0% | |
| ACTGAAATGGTACCCGGACA+GGG | + | chr3.1:28363023-28363042 | None:intergenic | 50.0% | |
| AGGCTTGTGCGATACTGATC+TGG | + | chr3.1:28362732-28362751 | None:intergenic | 50.0% | |
| AGTTACATGAAGTCGGCACC+TGG | - | chr3.1:28361959-28361978 | MS.gene018929:CDS | 50.0% | |
| ATGAGATCCCCACTTAGACG+AGG | + | chr3.1:28363063-28363082 | None:intergenic | 50.0% | |
| CCTCCTAAAGCAGATGAAGG+TGG | + | chr3.1:28361811-28361830 | None:intergenic | 50.0% | |
| CGACTCACTGAAATGGTACC+CGG | + | chr3.1:28363029-28363048 | None:intergenic | 50.0% | |
| CGCACAAGCCTTTGCAAAGA+GGG | - | chr3.1:28362741-28362760 | MS.gene018929:CDS | 50.0% | |
| CGGGTACCATTTCAGTGAGT+CGG | - | chr3.1:28363027-28363046 | MS.gene018929:CDS | 50.0% | |
| CTCCTTCGTGCATTCTCTTG+AGG | + | chr3.1:28362594-28362613 | None:intergenic | 50.0% | |
| GCAGCCATGTCCATGACAAT+AGG | + | chr3.1:28362858-28362877 | None:intergenic | 50.0% | |
| GCCTCGCAGTTACATGAAGT+CGG | - | chr3.1:28361952-28361971 | MS.gene018929:CDS | 50.0% | |
| GCTTCCGCTGTCTTGTGAAA+AGG | - | chr3.1:28362362-28362381 | MS.gene018929:CDS | 50.0% | |
| GGAAGCGAACCATCATCAAC+AGG | + | chr3.1:28362348-28362367 | None:intergenic | 50.0% | |
| GGATGCTAATGGAAACCGTC+CGG | - | chr3.1:28362227-28362246 | MS.gene018929:CDS | 50.0% | |
| TCGCACAAGCCTTTGCAAAG+AGG | - | chr3.1:28362740-28362759 | MS.gene018929:CDS | 50.0% | |
| ! | CCACCTTCATCTGCTTTAGG+AGG | - | chr3.1:28361808-28361827 | MS.gene018929:CDS | 50.0% |
| ! | CTCATGGAGTATTCGAGACC+TGG | - | chr3.1:28362700-28362719 | MS.gene018929:CDS | 50.0% |
| ! | GACCCCTTTTCACAAGACAG+CGG | + | chr3.1:28362369-28362388 | None:intergenic | 50.0% |
| ! | GCTGATGAGCCTGTTGATGA+TGG | - | chr3.1:28362336-28362355 | MS.gene018929:CDS | 50.0% |
| ! | TGTGCTGCTGACCATCAAAG+AGG | + | chr3.1:28362971-28362990 | None:intergenic | 50.0% |
| !! | AAACTTTGGAGCCACAGGAG+AGG | + | chr3.1:28362397-28362416 | None:intergenic | 50.0% |
| !! | TCCATTTTGACGGACACACC+AGG | + | chr3.1:28361980-28361999 | None:intergenic | 50.0% |
| !! | TCGGTAAACTTTGGAGCCAC+AGG | + | chr3.1:28362402-28362421 | None:intergenic | 50.0% |
| AGCAGCACAGTGAAGAGCAG+TGG | + | chr3.1:28362136-28362155 | None:intergenic | 55.0% | |
| CACTGAAATGGTACCCGGAC+AGG | + | chr3.1:28363024-28363043 | None:intergenic | 55.0% | |
| CGAGGACAGAACCGCTTTGA+TGG | - | chr3.1:28362020-28362039 | MS.gene018929:CDS | 55.0% | |
| GGACAGAACCGCTTTGATGG+TGG | - | chr3.1:28362023-28362042 | MS.gene018929:CDS | 55.0% | |
| GGATGCTGCCACCATCAAAG+CGG | + | chr3.1:28362034-28362053 | None:intergenic | 55.0% | |
| TGCTAATGGAAACCGTCCGG+TGG | - | chr3.1:28362230-28362249 | MS.gene018929:CDS | 55.0% | |
| TGTTTCTCACAGCCCTGTCC+GGG | - | chr3.1:28363008-28363027 | MS.gene018929:CDS | 55.0% | |
| ! | CTGTTTCTCACAGCCCTGTC+CGG | - | chr3.1:28363007-28363026 | MS.gene018929:CDS | 55.0% |
| ! | GCCGACTTCATGTAACTGCG+AGG | + | chr3.1:28361956-28361975 | None:intergenic | 55.0% |
| ! | TTTGGAGCCACAGGAGAGGA+TGG | + | chr3.1:28362393-28362412 | None:intergenic | 55.0% |
| !! | CTGTGCTGCTTCGAGTGGTA+CGG | - | chr3.1:28362146-28362165 | MS.gene018929:CDS | 55.0% |
| !! | CTTCACTGTGCTGCTTCGAG+TGG | - | chr3.1:28362141-28362160 | MS.gene018929:CDS | 55.0% |
| !! | TGATGGTGGCAGCATCCTGT+GGG | - | chr3.1:28362037-28362056 | MS.gene018929:CDS | 55.0% |
| !! | TTGATGGTGGCAGCATCCTG+TGG | - | chr3.1:28362036-28362055 | MS.gene018929:CDS | 55.0% |
| AGGGCATGGCACACAGCTGT+AGG | + | chr3.1:28362634-28362653 | None:intergenic | 60.0% | |
| GCTGCAACGAGCCTTTGTCG+TGG | - | chr3.1:28362876-28362895 | MS.gene018929:CDS | 60.0% | |
| GGGGTCTCCATCCTCTCCTG+TGG | - | chr3.1:28362383-28362402 | MS.gene018929:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 28361760 | 28363208 | 28361760 | ID=MS.gene018929 |
| chr3.1 | mRNA | 28361760 | 28363208 | 28361760 | ID=MS.gene018929.t1;Parent=MS.gene018929 |
| chr3.1 | exon | 28361760 | 28363208 | 28361760 | ID=MS.gene018929.t1.exon1;Parent=MS.gene018929.t1 |
| chr3.1 | CDS | 28361760 | 28363208 | 28361760 | ID=cds.MS.gene018929.t1;Parent=MS.gene018929.t1 |
| Gene Sequence |
| Protein sequence |
