AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018931

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018931.t1 MTR_3g435680 84.826 402 44 2 36 426 1 396 0.0 685
MS.gene018931.t1 MTR_3g435590 52.998 517 104 10 1 426 1 469 2.27e-166 476
MS.gene018931.t1 MTR_3g029590 60.934 407 84 10 40 375 93 495 6.69e-137 409
MS.gene018931.t1 MTR_3g029590 61.818 55 20 1 372 425 627 681 3.74e-12 68.6
MS.gene018931.t1 MTR_7g092070 48.529 408 141 10 40 380 95 500 1.41e-106 331
MS.gene018931.t1 MTR_1g050438 41.985 393 159 9 40 369 64 450 2.03e-89 283
MS.gene018931.t1 MTR_0728s0020 41.985 393 159 9 40 369 80 466 5.90e-89 282
MS.gene018931.t1 MTR_5g082830 43.917 337 142 12 40 345 78 398 2.26e-73 243
MS.gene018931.t1 MTR_5g071070 45.490 255 106 6 144 365 115 369 3.03e-67 225
MS.gene018931.t1 MTR_5g071070 40.000 325 137 10 78 365 148 451 1.74e-66 225
MS.gene018931.t1 MTR_3g070880 38.973 331 144 8 40 360 58 340 1.03e-64 216
MS.gene018931.t1 MTR_1g075890 66.187 139 45 1 154 290 206 344 8.91e-64 217
MS.gene018931.t1 MTR_8g102100 57.042 142 59 1 171 312 77 216 1.26e-49 173
MS.gene018931.t1 MTR_6g090380 68.224 107 34 0 171 277 99 205 2.34e-48 169
MS.gene018931.t1 MTR_3g103960 52.817 142 59 4 170 309 48 183 6.51e-46 160
MS.gene018931.t1 MTR_2g090605 60.360 111 44 0 175 285 77 187 1.31e-43 157
MS.gene018931.t1 MTR_4g078660 58.879 107 44 0 171 277 56 162 2.30e-42 152
MS.gene018931.t1 MTR_3g464260 50.000 146 46 2 154 297 183 303 3.55e-42 156
MS.gene018931.t1 MTR_3g464270 44.828 174 85 3 174 346 8 171 2.77e-41 150
MS.gene018931.t1 MTR_3g464290 55.208 96 40 2 156 248 79 174 2.47e-30 122
MS.gene018931.t1 MTR_3g464280 43.704 135 40 2 154 286 165 265 3.12e-28 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018931.t1 AT2G41900 50.575 348 120 10 40 345 96 433 2.36e-91 291
MS.gene018931.t1 AT5G12850 48.864 352 131 10 40 345 89 437 3.70e-86 277
MS.gene018931.t1 AT5G58620 54.167 216 78 6 154 353 186 396 2.16e-70 233
MS.gene018931.t1 AT3G55980 43.000 300 141 9 40 328 78 358 1.76e-64 217
MS.gene018931.t1 AT2G40140 42.336 274 103 5 68 328 137 368 4.67e-64 216
MS.gene018931.t1 AT2G40140 42.336 274 103 5 68 328 137 368 4.67e-64 216
MS.gene018931.t1 AT3G55980 43.000 300 141 9 40 328 145 425 5.74e-64 217
MS.gene018931.t1 AT2G25900 66.355 107 36 0 171 277 86 192 1.53e-49 171
MS.gene018931.t1 AT2G25900 66.355 107 36 0 171 277 86 192 1.53e-49 171
MS.gene018931.t1 AT4G29190 47.701 174 83 2 157 329 60 226 7.31e-47 165
MS.gene018931.t1 AT1G03790 52.174 161 71 3 134 290 43 201 1.27e-46 165
MS.gene018931.t1 AT2G19810 63.551 107 39 0 171 277 74 180 2.31e-45 161
MS.gene018931.t1 AT5G07500 57.759 116 49 0 162 277 39 154 3.79e-45 157
MS.gene018931.t1 AT5G44260 58.871 124 48 2 155 277 42 163 9.26e-43 154

Find 100 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAGTATTGATACTTTAA+AGG 0.196866 3.1:-28377371 MS.gene018931:CDS
CCTTTATCATCTGCTGAAAA+TGG 0.235234 3.1:-28377124 MS.gene018931:CDS
TTCTCATAAGGATGGTAAAA+AGG 0.298159 3.1:+28376914 None:intergenic
ATCAAAGTCATTTCCGTTAA+CGG 0.344707 3.1:+28376331 None:intergenic
TCTTGGAACATATTTCTTCC+TGG 0.349675 3.1:+28376485 None:intergenic
GATCCAGTGGACACATATAT+TGG 0.363755 3.1:+28376674 None:intergenic
TATCTTAGTTGAGAATAGAT+TGG 0.376314 3.1:+28376243 None:intergenic
GTGAAGAGCCTGATCTATCT+TGG 0.390741 3.1:-28376268 MS.gene018931:CDS
GCAGCATTTACACCAGCCTT+TGG 0.400910 3.1:+28377334 None:intergenic
AGGAGCAGATGCAGCTGATC+GGG 0.402058 3.1:+28376637 None:intergenic
TCATCTTCATCTGCGGTAGA+AGG 0.405205 3.1:-28377463 MS.gene018931:CDS
GTAAATGCTGCTGATGCTGC+TGG 0.405634 3.1:-28377322 MS.gene018931:CDS
CCATTTGCAAAAGGAGATAA+AGG 0.408677 3.1:+28376548 None:intergenic
AGAATGGTGCGATACCGATC+TGG 0.414981 3.1:+28376764 None:intergenic
TGTTAACTCCGGTCCTAAGC+GGG 0.415579 3.1:-28376381 MS.gene018931:CDS
AGCTGTAGGTGAACTTTCTA+AGG 0.419982 3.1:+28376876 None:intergenic
GGAGATAAAGGCAGTGCAAA+AGG 0.432094 3.1:+28376560 None:intergenic
ATTGTGAAAACAAGTCTTGA+AGG 0.440368 3.1:-28377226 MS.gene018931:CDS
TTTCCGTTAACGGACCAATC+AGG 0.440403 3.1:+28376341 None:intergenic
GCAGCCATGTCCATGACATT+AGG 0.440412 3.1:+28376617 None:intergenic
AAACCTGATTGGTCCGTTAA+CGG 0.446692 3.1:-28376344 MS.gene018931:CDS
CACCAACATGGCACCAGGAC+GGG 0.447567 3.1:+28376412 None:intergenic
TCTACACTAGGAAGTGCAAT+TGG 0.451987 3.1:+28377028 None:intergenic
CTCCTTCGAGCATTCTCATA+AGG 0.454231 3.1:+28376902 None:intergenic
ACTTTAAAGGTTACACCGTC+AGG 0.455897 3.1:-28377358 MS.gene018931:CDS
CCCATACTGCAAAACCTGAT+TGG 0.461512 3.1:-28376355 MS.gene018931:CDS
ACAGCTGTGTCGGTAAACTT+TGG 0.463128 3.1:+28377079 None:intergenic
GCAGTATGGGATCCCCGCTT+AGG 0.464105 3.1:+28376368 None:intergenic
ATCGTGCATACTCTCATGAT+TGG 0.468172 3.1:-28376946 MS.gene018931:CDS
AGCTGGCCAAGCATTATATG+AGG 0.470374 3.1:+28376517 None:intergenic
TGTTTCTCACAGCCCCGTCC+TGG 0.471928 3.1:-28376425 MS.gene018931:CDS
GAAAACAAGTCTTGAAGGAC+TGG 0.473587 3.1:-28377221 MS.gene018931:CDS
AGTACCATCTTTGCAGAGAA+TGG 0.480755 3.1:+28376748 None:intergenic
GATGAAGATGACGAAATTGA+AGG 0.481890 3.1:+28377475 None:intergenic
AATATGTTCCAAGACATTCA+TGG 0.483668 3.1:-28376476 MS.gene018931:CDS
CGCACCATTCTCTGCAAAGA+TGG 0.486710 3.1:-28376752 MS.gene018931:CDS
TGTCTGTATGGCTGATTCAA+TGG 0.488364 3.1:-28377407 MS.gene018931:CDS
TCAATGGTGGATGCGTCCTA+TGG 0.492857 3.1:-28377391 MS.gene018931:CDS
ATTGTTTCCATGCTCAAAAG+AGG 0.495896 3.1:+28376292 None:intergenic
CTCATGGACTATTCGAGACC+TGG 0.504397 3.1:-28376793 MS.gene018931:CDS
GATGCAGCTGATCGGGGTAA+AGG 0.505671 3.1:+28376644 None:intergenic
TGAAGAGCCTGATCTATCTT+GGG 0.506674 3.1:-28376267 MS.gene018931:CDS
TGGCCAGCTCTTCACTTACC+AGG 0.516218 3.1:-28376503 MS.gene018931:CDS
ATACCGATCTGGGTGTAGCC+AGG 0.517913 3.1:+28376775 None:intergenic
GGAGAGATGCCATTTGCAAA+AGG 0.518357 3.1:+28376539 None:intergenic
GATAATTGTGAATTTGCTCA+TGG 0.522724 3.1:-28376809 MS.gene018931:CDS
GATTGGACCCAAGATAGATC+AGG 0.523337 3.1:+28376260 None:intergenic
ACCAACATGGCACCAGGACG+GGG 0.527883 3.1:+28376413 None:intergenic
TTTGGAGCCACAGGAGAGGA+TGG 0.530352 3.1:+28377097 None:intergenic
AAAGGCAGTGCAAAAGGAGC+TGG 0.531657 3.1:+28376566 None:intergenic
CGACTCACCAACATGGCACC+AGG 0.537419 3.1:+28376407 None:intergenic
CTTCCTGGTAAGTGAAGAGC+TGG 0.537605 3.1:+28376500 None:intergenic
TCTCTCCCTCATATAATGCT+TGG 0.540002 3.1:-28376523 MS.gene018931:CDS
CGTCCAATATATGTGTCCAC+TGG 0.540039 3.1:-28376677 MS.gene018931:CDS
GCTGCTGACCATGAATGTCT+TGG 0.541101 3.1:+28376468 None:intergenic
CAATGGTGGATGCGTCCTAT+GGG 0.541671 3.1:-28377390 MS.gene018931:CDS
TCGGTAAACTTTGGAGCCAC+AGG 0.542025 3.1:+28377088 None:intergenic
TCAGTTAATTGAAAGATGTA+CGG 0.542243 3.1:-28377520 None:intergenic
ATGGGATCCCCGCTTAGGAC+CGG 0.543236 3.1:+28376373 None:intergenic
TAGGAGCAGATGCAGCTGAT+CGG 0.547990 3.1:+28376636 None:intergenic
GAATGGTGCGATACCGATCT+GGG 0.555264 3.1:+28376765 None:intergenic
GATAAAGGGGCAGCTGAATG+AGG 0.555896 3.1:+28377139 None:intergenic
TAAAGTATCAATACTCCCAT+AGG 0.557279 3.1:+28377375 None:intergenic
GAAATAACATTAACATCCAC+CGG 0.559063 3.1:+28377262 None:intergenic
ACACCGTCAGGTCCAAAGGC+TGG 0.559090 3.1:-28377346 MS.gene018931:CDS
GCCCCGTCCTGGTGCCATGT+TGG 0.569100 3.1:-28376414 MS.gene018931:CDS
ATCAATTGTGTGGATGCTGA+TGG 0.582815 3.1:-28377292 MS.gene018931:CDS
AGGGCATGGCACACAGCTGT+AGG 0.585274 3.1:+28376862 None:intergenic
TCACCAACATGGCACCAGGA+CGG 0.585854 3.1:+28376411 None:intergenic
GGTTACACCGTCAGGTCCAA+AGG 0.586163 3.1:-28377350 MS.gene018931:CDS
TTCGAGCATTCTCATAAGGA+TGG 0.587046 3.1:+28376906 None:intergenic
CTGGTGCCATGTTGGTGAGT+CGG 0.587689 3.1:-28376406 MS.gene018931:CDS
GGATGCTGATGGAAACCGTC+CGG 0.589068 3.1:-28377281 MS.gene018931:CDS
TGCATCTGCTCCTAATGTCA+TGG 0.589356 3.1:-28376627 MS.gene018931:CDS
CTGTATGGCTGATTCAATGG+TGG 0.593449 3.1:-28377404 MS.gene018931:CDS
TGGTACTAGTTGTGACCGAA+AGG 0.594642 3.1:-28376732 MS.gene018931:CDS
TGTAGAATTAACAGCTGTGT+CGG 0.595082 3.1:+28377069 None:intergenic
TGCTCCTAATGTCATGGACA+TGG 0.600640 3.1:-28376621 MS.gene018931:CDS
ACACCAGCCTTTGGACCTGA+CGG 0.604092 3.1:+28377343 None:intergenic
CTGTTAACTCCGGTCCTAAG+CGG 0.604685 3.1:-28376382 MS.gene018931:CDS
CTTGATGAATTAACAGATAG+CGG 0.605690 3.1:+28377163 None:intergenic
GTGAGTCGGTCTGTTAACTC+CGG 0.607880 3.1:-28376392 MS.gene018931:CDS
AGACCTGGCTACACCCAGAT+CGG 0.613127 3.1:-28376778 MS.gene018931:CDS
TACATGCTGCTTTCTACACT+AGG 0.613651 3.1:+28377016 None:intergenic
TAACATTAACATCCACCGGA+CGG 0.614488 3.1:+28377266 None:intergenic
GCTGGCCAAGCATTATATGA+GGG 0.615943 3.1:+28376518 None:intergenic
TGGATCTCCATCCTCTCCTG+TGG 0.628993 3.1:-28377104 MS.gene018931:CDS
AATTTCGTCATCTTCATCTG+CGG 0.629046 3.1:-28377470 MS.gene018931:CDS
TAAAGGAACAGCAGATCCAG+TGG 0.630564 3.1:+28376661 None:intergenic
AGTATGCACGATGACAAAGA+AGG 0.634741 3.1:+28376957 None:intergenic
GTTAACTCCGGTCCTAAGCG+GGG 0.637836 3.1:-28376380 MS.gene018931:CDS
TGCTGATGGAAACCGTCCGG+TGG 0.644021 3.1:-28377278 MS.gene018931:CDS
AACAGACCGACTCACCAACA+TGG 0.650102 3.1:+28376400 None:intergenic
ATCCTTATGAGAATGCTCGA+AGG 0.652618 3.1:-28376904 MS.gene018931:CDS
GTTAATTGAAAGATGTACGG+TGG 0.654833 3.1:-28377517 None:intergenic
GGAGCAGATGCAGCTGATCG+GGG 0.658028 3.1:+28376638 None:intergenic
AAACTTTGGAGCCACAGGAG+AGG 0.663839 3.1:+28377093 None:intergenic
GAACAATCGATATCAGCACC+AGG 0.675991 3.1:+28377190 None:intergenic
TGGCGCTGATATCAATTGTG+TGG 0.679251 3.1:-28377302 MS.gene018931:CDS
ATACATGCGAAATTCATCTG+TGG 0.700612 3.1:+28376991 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCCCCTTTTTTAAAATCA+GGG + chr3.1:28376912-28376931 None:intergenic 25.0%
AATATGTTCCAAGACATTCA+TGG - chr3.1:28377276-28377295 MS.gene018931:CDS 30.0%
ATCAAAGTCATTTCCGTTAA+CGG + chr3.1:28377424-28377443 None:intergenic 30.0%
ATTGTGAAAACAAGTCTTGA+AGG - chr3.1:28376526-28376545 MS.gene018931:CDS 30.0%
CTTGATGAATTAACAGATAG+CGG + chr3.1:28376592-28376611 None:intergenic 30.0%
GAAAAATCTAACTGTCTGTA+TGG - chr3.1:28376333-28376352 MS.gene018931:CDS 30.0%
GAAATAACATTAACATCCAC+CGG + chr3.1:28376493-28376512 None:intergenic 30.0%
TTCTCATAAGGATGGTAAAA+AGG + chr3.1:28376841-28376860 None:intergenic 30.0%
! ATTTTCAGCAGATGATAAAG+GGG + chr3.1:28376629-28376648 None:intergenic 30.0%
! CATTTTCAGCAGATGATAAA+GGG + chr3.1:28376630-28376649 None:intergenic 30.0%
! GATAATTGTGAATTTGCTCA+TGG - chr3.1:28376943-28376962 MS.gene018931:CDS 30.0%
! TAAAGTATCAATACTCCCAT+AGG + chr3.1:28376380-28376399 None:intergenic 30.0%
!! ATGCCCTGATTTTAAAAAAG+GGG - chr3.1:28376906-28376925 MS.gene018931:CDS 30.0%
!! CATGCCCTGATTTTAAAAAA+GGG - chr3.1:28376905-28376924 MS.gene018931:CDS 30.0%
!! TGGGAGTATTGATACTTTAA+AGG - chr3.1:28376381-28376400 MS.gene018931:CDS 30.0%
!!! CAATCCCCTTTTTTAAAATC+AGG + chr3.1:28376913-28376932 None:intergenic 30.0%
!!! GAAGGAGATTTTGATTTGTT+AGG + chr3.1:28376262-28376281 None:intergenic 30.0%
AATTTCGTCATCTTCATCTG+CGG - chr3.1:28376282-28376301 MS.gene018931:CDS 35.0%
ATACATGCGAAATTCATCTG+TGG + chr3.1:28376764-28376783 None:intergenic 35.0%
ATTGTTTCCATGCTCAAAAG+AGG + chr3.1:28377463-28377482 None:intergenic 35.0%
CCATTTGCAAAAGGAGATAA+AGG + chr3.1:28377207-28377226 None:intergenic 35.0%
CCTTTATCATCTGCTGAAAA+TGG - chr3.1:28376628-28376647 MS.gene018931:CDS 35.0%
GATGAAGATGACGAAATTGA+AGG + chr3.1:28376280-28376299 None:intergenic 35.0%
TCTTGGAACATATTTCTTCC+TGG + chr3.1:28377270-28377289 None:intergenic 35.0%
TGTAGAATTAACAGCTGTGT+CGG + chr3.1:28376686-28376705 None:intergenic 35.0%
! AGATATACCTCTTTTGAGCA+TGG - chr3.1:28377453-28377472 MS.gene018931:CDS 35.0%
! CCATTTTCAGCAGATGATAA+AGG + chr3.1:28376631-28376650 None:intergenic 35.0%
! CCTTTATCTCCTTTTGCAAA+TGG - chr3.1:28377204-28377223 MS.gene018931:CDS 35.0%
! TCTTTTGAGCATGGAAACAA+TGG - chr3.1:28377462-28377481 MS.gene018931:CDS 35.0%
!! CCATGCCCTGATTTTAAAAA+AGG - chr3.1:28376904-28376923 MS.gene018931:CDS 35.0%
!!! CCTTTTTTAAAATCAGGGCA+TGG + chr3.1:28376907-28376926 None:intergenic 35.0%
AGCTGTAGGTGAACTTTCTA+AGG + chr3.1:28376879-28376898 None:intergenic 40.0%
AGGATGGTAAAAAGGACACT+CGG + chr3.1:28376833-28376852 None:intergenic 40.0%
AGTACCATCTTTGCAGAGAA+TGG + chr3.1:28377007-28377026 None:intergenic 40.0%
AGTATGCACGATGACAAAGA+AGG + chr3.1:28376798-28376817 None:intergenic 40.0%
ATCAATTGTGTGGATGCTGA+TGG - chr3.1:28376460-28376479 MS.gene018931:CDS 40.0%
ATCCTTATGAGAATGCTCGA+AGG - chr3.1:28376848-28376867 MS.gene018931:CDS 40.0%
ATCGTGCATACTCTCATGAT+TGG - chr3.1:28376806-28376825 MS.gene018931:CDS 40.0%
GAAAACAAGTCTTGAAGGAC+TGG - chr3.1:28376531-28376550 MS.gene018931:CDS 40.0%
GATCCAGTGGACACATATAT+TGG + chr3.1:28377081-28377100 None:intergenic 40.0%
TAACATTAACATCCACCGGA+CGG + chr3.1:28376489-28376508 None:intergenic 40.0%
TCTCTCCCTCATATAATGCT+TGG - chr3.1:28377229-28377248 MS.gene018931:CDS 40.0%
TGAAGAGCCTGATCTATCTT+GGG - chr3.1:28377485-28377504 MS.gene018931:CDS 40.0%
TTCGAGCATTCTCATAAGGA+TGG + chr3.1:28376849-28376868 None:intergenic 40.0%
! AAACCTGATTGGTCCGTTAA+CGG - chr3.1:28377408-28377427 MS.gene018931:CDS 40.0%
! ACCAATCAGGTTTTGCAGTA+TGG + chr3.1:28377401-28377420 None:intergenic 40.0%
! ACTTTAAAGGTTACACCGTC+AGG - chr3.1:28376394-28376413 MS.gene018931:CDS 40.0%
! CCAATCAGGTTTTGCAGTAT+GGG + chr3.1:28377400-28377419 None:intergenic 40.0%
! GTGCAAAAAAGCACACCTTT+CGG + chr3.1:28377038-28377057 None:intergenic 40.0%
! TCTACACTAGGAAGTGCAAT+TGG + chr3.1:28376727-28376746 None:intergenic 40.0%
! TGTCTGTATGGCTGATTCAA+TGG - chr3.1:28376345-28376364 MS.gene018931:CDS 40.0%
!! TACATGCTGCTTTCTACACT+AGG + chr3.1:28376739-28376758 None:intergenic 40.0%
AGCTGGCCAAGCATTATATG+AGG + chr3.1:28377238-28377257 None:intergenic 45.0%
CCCATACTGCAAAACCTGAT+TGG - chr3.1:28377397-28377416 MS.gene018931:CDS 45.0%
CGTCCAATATATGTGTCCAC+TGG - chr3.1:28377075-28377094 MS.gene018931:CDS 45.0%
CTCCTTCGAGCATTCTCATA+AGG + chr3.1:28376853-28376872 None:intergenic 45.0%
GAACAATCGATATCAGCACC+AGG + chr3.1:28376565-28376584 None:intergenic 45.0%
GATTGGACCCAAGATAGATC+AGG + chr3.1:28377495-28377514 None:intergenic 45.0%
GCTGGCCAAGCATTATATGA+GGG + chr3.1:28377237-28377256 None:intergenic 45.0%
GGAGATAAAGGCAGTGCAAA+AGG + chr3.1:28377195-28377214 None:intergenic 45.0%
GTGAAGAGCCTGATCTATCT+TGG - chr3.1:28377484-28377503 MS.gene018931:CDS 45.0%
TAAAGGAACAGCAGATCCAG+TGG + chr3.1:28377094-28377113 None:intergenic 45.0%
TCATCTTCATCTGCGGTAGA+AGG - chr3.1:28376289-28376308 MS.gene018931:CDS 45.0%
TGCATCTGCTCCTAATGTCA+TGG - chr3.1:28377125-28377144 MS.gene018931:CDS 45.0%
TGCTCCTAATGTCATGGACA+TGG - chr3.1:28377131-28377150 MS.gene018931:CDS 45.0%
TGGTACTAGTTGTGACCGAA+AGG - chr3.1:28377020-28377039 MS.gene018931:CDS 45.0%
! ACAGCTGTGTCGGTAAACTT+TGG + chr3.1:28376676-28376695 None:intergenic 45.0%
! CTGTATGGCTGATTCAATGG+TGG - chr3.1:28376348-28376367 MS.gene018931:CDS 45.0%
! GGAGAGATGCCATTTGCAAA+AGG + chr3.1:28377216-28377235 None:intergenic 45.0%
! TTTCCGTTAACGGACCAATC+AGG + chr3.1:28377414-28377433 None:intergenic 45.0%
!! TGGCGCTGATATCAATTGTG+TGG - chr3.1:28376450-28376469 MS.gene018931:CDS 45.0%
!!! GAAGGACTGGTTTTATCACC+TGG - chr3.1:28376544-28376563 MS.gene018931:CDS 45.0%
AAAGGCAGTGCAAAAGGAGC+TGG + chr3.1:28377189-28377208 None:intergenic 50.0%
AGAATGGTGCGATACCGATC+TGG + chr3.1:28376991-28377010 None:intergenic 50.0%
CGCACCATTCTCTGCAAAGA+TGG - chr3.1:28377000-28377019 MS.gene018931:CDS 50.0%
CTGTTAACTCCGGTCCTAAG+CGG - chr3.1:28377370-28377389 MS.gene018931:CDS 50.0%
CTTCCTGGTAAGTGAAGAGC+TGG + chr3.1:28377255-28377274 None:intergenic 50.0%
GAATGGTGCGATACCGATCT+GGG + chr3.1:28376990-28377009 None:intergenic 50.0%
GATAAAGGGGCAGCTGAATG+AGG + chr3.1:28376616-28376635 None:intergenic 50.0%
GCAGCATTTACACCAGCCTT+TGG + chr3.1:28376421-28376440 None:intergenic 50.0%
GCAGCCATGTCCATGACATT+AGG + chr3.1:28377138-28377157 None:intergenic 50.0%
GCTGCTGACCATGAATGTCT+TGG + chr3.1:28377287-28377306 None:intergenic 50.0%
GTAAATGCTGCTGATGCTGC+TGG - chr3.1:28376430-28376449 MS.gene018931:CDS 50.0%
GTGAGTCGGTCTGTTAACTC+CGG - chr3.1:28377360-28377379 MS.gene018931:CDS 50.0%
TAGGAGCAGATGCAGCTGAT+CGG + chr3.1:28377119-28377138 None:intergenic 50.0%
TGTTAACTCCGGTCCTAAGC+GGG - chr3.1:28377371-28377390 MS.gene018931:CDS 50.0%
! AACAGACCGACTCACCAACA+TGG + chr3.1:28377355-28377374 None:intergenic 50.0%
! CTCATGGACTATTCGAGACC+TGG - chr3.1:28376959-28376978 MS.gene018931:CDS 50.0%
! GCTGCATCGAGCTTTTATCG+TGG - chr3.1:28377156-28377175 MS.gene018931:CDS 50.0%
!! AAACTTTGGAGCCACAGGAG+AGG + chr3.1:28376662-28376681 None:intergenic 50.0%
!! CAATGGTGGATGCGTCCTAT+GGG - chr3.1:28376362-28376381 MS.gene018931:CDS 50.0%
!! TCAATGGTGGATGCGTCCTA+TGG - chr3.1:28376361-28376380 MS.gene018931:CDS 50.0%
!! TCGGTAAACTTTGGAGCCAC+AGG + chr3.1:28376667-28376686 None:intergenic 50.0%
ACACCAGCCTTTGGACCTGA+CGG + chr3.1:28376412-28376431 None:intergenic 55.0%
AGACCTGGCTACACCCAGAT+CGG - chr3.1:28376974-28376993 MS.gene018931:CDS 55.0%
AGGAGCAGATGCAGCTGATC+GGG + chr3.1:28377118-28377137 None:intergenic 55.0%
ATACCGATCTGGGTGTAGCC+AGG + chr3.1:28376980-28376999 None:intergenic 55.0%
GATGCAGCTGATCGGGGTAA+AGG + chr3.1:28377111-28377130 None:intergenic 55.0%
GGATGCTGATGGAAACCGTC+CGG - chr3.1:28376471-28376490 MS.gene018931:CDS 55.0%
GGTTACACCGTCAGGTCCAA+AGG - chr3.1:28376402-28376421 MS.gene018931:CDS 55.0%
GTTAACTCCGGTCCTAAGCG+GGG - chr3.1:28377372-28377391 MS.gene018931:CDS 55.0%
TCACCAACATGGCACCAGGA+CGG + chr3.1:28377344-28377363 None:intergenic 55.0%
TGGATCTCCATCCTCTCCTG+TGG - chr3.1:28376648-28376667 MS.gene018931:CDS 55.0%
TGGCCAGCTCTTCACTTACC+AGG - chr3.1:28377249-28377268 MS.gene018931:CDS 55.0%
! TTTGGAGCCACAGGAGAGGA+TGG + chr3.1:28376658-28376677 None:intergenic 55.0%
!! CTGGTGCCATGTTGGTGAGT+CGG - chr3.1:28377346-28377365 MS.gene018931:CDS 55.0%
ACACCGTCAGGTCCAAAGGC+TGG - chr3.1:28376406-28376425 MS.gene018931:CDS 60.0%
ACCAACATGGCACCAGGACG+GGG + chr3.1:28377342-28377361 None:intergenic 60.0%
AGGGCATGGCACACAGCTGT+AGG + chr3.1:28376893-28376912 None:intergenic 60.0%
ATGGGATCCCCGCTTAGGAC+CGG + chr3.1:28377382-28377401 None:intergenic 60.0%
CACCAACATGGCACCAGGAC+GGG + chr3.1:28377343-28377362 None:intergenic 60.0%
CGACTCACCAACATGGCACC+AGG + chr3.1:28377348-28377367 None:intergenic 60.0%
GCAGTATGGGATCCCCGCTT+AGG + chr3.1:28377387-28377406 None:intergenic 60.0%
GGAGCAGATGCAGCTGATCG+GGG + chr3.1:28377117-28377136 None:intergenic 60.0%
TGCTGATGGAAACCGTCCGG+TGG - chr3.1:28376474-28376493 MS.gene018931:CDS 60.0%
TGTTTCTCACAGCCCCGTCC+TGG - chr3.1:28377327-28377346 MS.gene018931:CDS 60.0%
!! GCCCCGTCCTGGTGCCATGT+TGG - chr3.1:28377338-28377357 MS.gene018931:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 28376247 28377527 28376247 ID=MS.gene018931
chr3.1 mRNA 28376247 28377527 28376247 ID=MS.gene018931.t1;Parent=MS.gene018931
chr3.1 exon 28376247 28377527 28376247 ID=MS.gene018931.t1.exon1;Parent=MS.gene018931.t1
chr3.1 CDS 28376247 28377527 28376247 ID=cds.MS.gene018931.t1;Parent=MS.gene018931.t1
Gene Sequence

>MS.gene018931

ATGTACGGTGGTCCTAACAAATCAAAATCTCCTTCAATTTCGTCATCTTCATCTGCGGTAGAAGGTTCAAATAACGTCAATGACATGAAAAATCTAACTGTCTGTATGGCTGATTCAATGGTGGATGCGTCCTATGGGAGTATTGATACTTTAAAGGTTACACCGTCAGGTCCAAAGGCTGGTGTAAATGCTGCTGATGCTGCTGGCGCTGATATCAATTGTGTGGATGCTGATGGAAACCGTCCGGTGGATGTTAATGTTATTTCTCATAAGCTCGAAATTGTGAAAACAAGTCTTGAAGGACTGGTTTTATCACCTGGTGCTGATATCGATTGTTCTCTTCCGCTATCTGTTAATTCATCAAGTCCTCATTCAGCTGCCCCTTTATCATCTGCTGAAAATGGATCTCCATCCTCTCCTGTGGCTCCAAAGTTTACCGACACAGCTGTTAATTCTACATCAGAAAAGAAAGAATATCCAATTGCACTTCCTAGTGTAGAAAGCAGCATGTACGCCACAGATGAATTTCGCATGTATTCGTTTAAGATCCTTCTTTGTCATCGTGCATACTCTCATGATTGGACCGAGTGTCCTTTTTACCATCCTTATGAGAATGCTCGAAGGAGAGACCTTAGAAAGTTCACCTACAGCTGTGTGCCATGCCCTGATTTTAAAAAAGGGGATTGCAAACGTGCAGATAATTGTGAATTTGCTCATGGACTATTCGAGACCTGGCTACACCCAGATCGGTATCGCACCATTCTCTGCAAAGATGGTACTAGTTGTGACCGAAAGGTGTGCTTTTTTGCACATGTAGCTGAAGAGCTGCGTCCAATATATGTGTCCACTGGATCTGCTGTTCCTTTACCCCGATCAGCTGCATCTGCTCCTAATGTCATGGACATGGCTGCTGCATCGAGCTTTTATCGTGGTTTGCTACCAGCTCCTTTTGCACTGCCTTTATCTCCTTTTGCAAATGGCATCTCTCCCTCATATAATGCTTGGCCAGCTCTTCACTTACCAGGAAGAAATATGTTCCAAGACATTCATGGTCAGCAGCATATGCTAAACGACATAAGCTGTTTCTCACAGCCCCGTCCTGGTGCCATGTTGGTGAGTCGGTCTGTTAACTCCGGTCCTAAGCGGGGATCCCATACTGCAAAACCTGATTGGTCCGTTAACGGAAATGACTTTGATCGATCGCAAAGATATACCTCTTTTGAGCATGGAAACAATGGTGAAGAGCCTGATCTATCTTGGGTCCAATCTATTCTCAACTAA
Protein sequence

>MS.gene018931.t1

MYGGPNKSKSPSISSSSSAVEGSNNVNDMKNLTVCMADSMVDASYGSIDTLKVTPSGPKAGVNAADAAGADINCVDADGNRPVDVNVISHKLEIVKTSLEGLVLSPGADIDCSLPLSVNSSSPHSAAPLSSAENGSPSSPVAPKFTDTAVNSTSEKKEYPIALPSVESSMYATDEFRMYSFKILLCHRAYSHDWTECPFYHPYENARRRDLRKFTYSCVPCPDFKKGDCKRADNCEFAHGLFETWLHPDRYRTILCKDGTSCDRKVCFFAHVAEELRPIYVSTGSAVPLPRSAASAPNVMDMAAASSFYRGLLPAPFALPLSPFANGISPSYNAWPALHLPGRNMFQDIHGQQHMLNDISCFSQPRPGAMLVSRSVNSGPKRGSHTAKPDWSVNGNDFDRSQRYTSFEHGNNGEEPDLSWVQSILN