AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018945

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018945.t1 MTR_3g039990 92.308 234 18 0 1 234 78 311 1.76e-161 449
MS.gene018945.t1 MTR_0140s0030 45.387 271 97 8 1 234 78 334 9.05e-60 191
MS.gene018945.t1 MTR_0489s0020 45.387 271 97 8 1 234 78 334 9.05e-60 191
MS.gene018945.t1 MTR_7g010210 46.400 250 99 10 1 224 77 317 8.95e-51 168
MS.gene018945.t1 MTR_6g012180 42.562 242 101 6 1 216 77 306 1.10e-43 149
MS.gene018945.t1 MTR_7g010210 58.571 140 35 4 1 118 77 215 2.31e-41 142
MS.gene018945.t1 MTR_7g087130 32.281 285 107 9 1 225 77 335 1.57e-23 97.1
MS.gene018945.t1 MTR_7g076740 69.767 43 13 0 1 43 78 120 2.96e-15 73.6
MS.gene018945.t1 MTR_7g011170 42.697 89 39 3 2 78 78 166 4.19e-15 73.2
MS.gene018945.t1 MTR_6g012690 71.429 42 12 0 2 43 78 119 1.08e-14 72.4
MS.gene018945.t1 MTR_4g082290 71.429 42 12 0 2 43 78 119 1.24e-14 72.8
MS.gene018945.t1 MTR_4g082230 71.429 42 12 0 2 43 78 119 1.31e-14 72.4
MS.gene018945.t1 MTR_1g100653 70.732 41 12 0 2 42 78 118 2.23e-14 71.2
MS.gene018945.t1 MTR_8g027345 64.583 48 17 0 1 48 77 124 2.45e-14 71.2
MS.gene018945.t1 MTR_5g078140 69.767 43 13 0 1 43 77 119 2.51e-14 71.2
MS.gene018945.t1 MTR_3g065440 56.140 57 25 0 1 57 77 133 2.64e-14 71.2
MS.gene018945.t1 MTR_5g079670 67.442 43 14 0 1 43 76 118 3.63e-14 69.3
MS.gene018945.t1 MTR_3g074520 62.791 43 16 0 2 44 78 120 4.73e-14 70.9
MS.gene018945.t1 MTR_5g007370 65.116 43 15 0 1 43 77 119 4.92e-14 70.1
MS.gene018945.t1 MTR_2g034790 67.500 40 13 0 1 40 77 116 8.87e-14 69.7
MS.gene018945.t1 MTR_2g011660 66.667 42 14 0 2 43 79 120 1.28e-13 69.3
MS.gene018945.t1 MTR_4g125520 55.357 56 25 0 1 56 77 132 1.81e-13 68.6
MS.gene018945.t1 MTR_4g478180 66.667 42 14 0 2 43 79 120 1.85e-13 68.9
MS.gene018945.t1 MTR_8g031360 70.000 40 12 0 1 40 79 118 1.89e-13 68.6
MS.gene018945.t1 MTR_5g079120 59.259 54 20 1 1 54 126 177 2.23e-13 68.6
MS.gene018945.t1 MTR_4g485530 66.667 42 14 0 1 42 77 118 2.75e-13 66.6
MS.gene018945.t1 MTR_4g091490 64.286 42 15 0 2 43 79 120 2.93e-13 68.6
MS.gene018945.t1 MTR_7g117730 68.293 41 13 0 1 41 77 117 3.20e-13 67.4
MS.gene018945.t1 MTR_1g076150 55.000 60 24 1 2 61 78 134 3.48e-13 67.4
MS.gene018945.t1 MTR_4g121460 65.000 40 14 0 1 40 77 116 3.73e-13 68.2
MS.gene018945.t1 MTR_2g097910 50.000 56 28 0 1 56 85 140 5.11e-13 67.4
MS.gene018945.t1 MTR_2g089620 65.854 41 14 0 2 42 78 118 5.33e-13 67.4
MS.gene018945.t1 MTR_4g073420 67.500 40 13 0 1 40 77 116 5.53e-13 67.0
MS.gene018945.t1 MTR_8g020490 71.429 42 12 0 1 42 73 114 9.59e-13 66.2
MS.gene018945.t1 MTR_4g065017 52.727 55 26 0 2 56 83 137 1.10e-12 66.6
MS.gene018945.t1 MTR_5g029840 62.791 43 16 0 1 43 77 119 1.14e-12 66.6
MS.gene018945.t1 MTR_4g102380 65.116 43 15 0 1 43 77 119 1.45e-12 65.9
MS.gene018945.t1 MTR_3g083540 64.583 48 15 1 1 48 106 151 1.74e-12 65.9
MS.gene018945.t1 MTR_3g097450 65.000 40 14 0 1 40 77 116 1.79e-12 65.9
MS.gene018945.t1 MTR_5g079220 67.500 40 13 0 1 40 86 125 1.86e-12 65.5
MS.gene018945.t1 MTR_8g098860 61.905 42 16 0 1 42 77 118 2.27e-12 65.9
MS.gene018945.t1 MTR_0197s0010 62.791 43 16 0 1 43 66 108 3.87e-12 63.9
MS.gene018945.t1 MTR_4g100720 65.116 43 15 0 1 43 78 120 4.24e-12 62.8
MS.gene018945.t1 MTR_5g079290 65.000 40 14 0 1 40 82 121 4.86e-12 64.3
MS.gene018945.t1 MTR_6g009430 62.791 43 16 0 1 43 77 119 5.75e-12 64.7
MS.gene018945.t1 MTR_5g078910 65.000 40 14 0 1 40 72 111 6.80e-12 64.3
MS.gene018945.t1 MTR_8g095390 62.500 40 15 0 1 40 77 116 7.49e-12 64.3
MS.gene018945.t1 MTR_1g112760 66.667 42 14 0 1 42 78 119 9.84e-12 62.8
MS.gene018945.t1 MTR_7g115650 58.537 41 17 0 2 42 78 118 1.05e-11 62.4
MS.gene018945.t1 MTR_1g043050 65.000 40 14 0 1 40 77 116 1.08e-11 63.2
MS.gene018945.t1 MTR_3g028740 60.976 41 16 0 1 41 87 127 1.23e-11 63.5
MS.gene018945.t1 MTR_8g017340 62.500 40 15 0 1 40 78 117 1.72e-11 63.5
MS.gene018945.t1 MTR_4g105130 45.205 73 28 2 1 61 77 149 2.02e-11 63.2
MS.gene018945.t1 MTR_0001s0360 65.000 40 14 0 1 40 72 111 2.27e-11 62.4
MS.gene018945.t1 MTR_2g096380 61.538 39 15 0 1 39 8 46 2.42e-11 60.8
MS.gene018945.t1 MTR_5g078800 65.000 40 14 0 1 40 72 111 2.90e-11 62.0
MS.gene018945.t1 MTR_3g077110 64.286 42 15 0 1 42 77 118 4.83e-11 62.0
MS.gene018945.t1 MTR_0247s0040 67.568 37 12 0 1 37 72 108 5.34e-11 60.1
MS.gene018945.t1 MTR_1g085040 57.143 49 18 1 1 49 77 122 5.56e-11 62.0
MS.gene018945.t1 MTR_7g109320 50.000 60 28 1 5 62 81 140 5.62e-11 61.6
MS.gene018945.t1 MTR_2g096380 61.538 39 15 0 1 39 71 109 7.18e-11 60.5
MS.gene018945.t1 MTR_7g017260 65.000 40 14 0 1 40 92 131 7.63e-11 60.8
MS.gene018945.t1 MTR_1g017000 62.500 40 15 0 1 40 78 117 7.99e-11 60.5
MS.gene018945.t1 MTR_2g096380 61.538 39 15 0 1 39 52 90 8.50e-11 60.1
MS.gene018945.t1 MTR_7g096930 53.704 54 24 1 2 55 78 130 9.82e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018945.t1 AT1G74650 41.697 271 96 8 1 228 1 252 4.06e-50 164
MS.gene018945.t1 AT1G74650 41.697 271 96 8 1 228 77 328 4.60e-48 161
MS.gene018945.t1 AT3G47600 41.699 259 87 9 1 214 71 310 3.50e-45 154
MS.gene018945.t1 AT3G47600 41.699 259 87 9 1 214 77 316 1.42e-44 152
MS.gene018945.t1 AT5G62470 39.146 281 86 9 2 216 77 338 1.93e-41 144
MS.gene018945.t1 AT5G62470 39.146 281 86 9 2 216 78 339 2.17e-41 144
MS.gene018945.t1 AT1G74650 39.231 260 96 8 12 228 7 247 2.22e-41 142
MS.gene018945.t1 AT3G28910 48.485 165 42 5 1 127 1 160 2.90e-39 136
MS.gene018945.t1 AT3G28910 48.485 165 42 5 1 127 77 236 8.12e-38 134
MS.gene018945.t1 AT1G08810 47.619 126 36 3 1 125 77 173 7.37e-26 102
MS.gene018945.t1 AT1G08810 43.478 115 35 3 12 125 5 90 1.41e-19 83.6
MS.gene018945.t1 AT1G08810 43.478 115 35 3 12 125 5 90 1.41e-19 83.6
MS.gene018945.t1 AT5G15310 34.752 141 74 5 2 129 78 213 4.57e-16 75.1
MS.gene018945.t1 AT5G15310 37.405 131 64 5 2 119 78 203 4.62e-16 76.3
MS.gene018945.t1 AT3G01140 46.667 90 35 3 2 78 78 167 5.26e-16 76.3
MS.gene018945.t1 AT5G15310 37.405 131 64 5 2 119 78 203 5.28e-16 75.9
MS.gene018945.t1 AT3G01140 46.667 90 35 3 2 78 121 210 8.30e-16 75.9
MS.gene018945.t1 AT4G17785 71.795 39 11 0 2 40 79 117 9.41e-14 69.7
MS.gene018945.t1 AT4G17785 71.795 39 11 0 2 40 79 117 1.01e-13 69.7
MS.gene018945.t1 AT3G02940 71.795 39 11 0 2 40 78 116 1.16e-13 69.3
MS.gene018945.t1 AT3G02940 71.795 39 11 0 2 40 78 116 1.28e-13 69.3
MS.gene018945.t1 AT3G02940 71.795 39 11 0 2 40 78 116 1.28e-13 69.3
MS.gene018945.t1 AT1G66230 63.636 44 16 0 1 44 77 120 1.35e-13 68.9
MS.gene018945.t1 AT5G16600 66.667 42 14 0 2 43 78 119 1.69e-13 68.9
MS.gene018945.t1 AT3G13540 70.000 40 12 0 1 40 88 127 1.71e-13 68.2
MS.gene018945.t1 AT3G61250 70.000 40 12 0 1 40 77 116 1.86e-13 68.6
MS.gene018945.t1 AT4G05100 64.286 42 15 0 2 43 79 120 2.45e-13 68.6
MS.gene018945.t1 AT5G16770 74.359 39 10 0 2 40 78 116 2.54e-13 68.6
MS.gene018945.t1 AT5G16770 74.359 39 10 0 2 40 78 116 2.54e-13 68.6
MS.gene018945.t1 AT4G38620 54.839 62 23 2 1 59 77 136 2.71e-13 68.2
MS.gene018945.t1 AT5G16770 74.359 39 10 0 2 40 78 116 2.83e-13 68.6
MS.gene018945.t1 AT5G16770 74.359 39 10 0 2 40 78 116 2.83e-13 68.6
MS.gene018945.t1 AT4G12350 65.116 43 15 0 1 43 77 119 3.41e-13 67.8
MS.gene018945.t1 AT5G54230 66.667 42 14 0 2 43 78 119 3.60e-13 68.2
MS.gene018945.t1 AT4G21440 64.286 42 15 0 2 43 78 119 5.27e-13 67.8
MS.gene018945.t1 AT1G22640 65.000 40 14 0 1 40 20 59 6.55e-13 65.9
MS.gene018945.t1 AT5G65230 69.231 39 12 0 2 40 78 116 7.39e-13 67.0
MS.gene018945.t1 AT5G14750 67.500 40 13 0 1 40 20 59 7.66e-13 64.3
MS.gene018945.t1 AT5G14750 67.500 40 13 0 1 40 20 59 7.66e-13 64.3
MS.gene018945.t1 AT5G62320 61.364 44 17 0 1 44 85 128 1.25e-12 65.9
MS.gene018945.t1 AT5G49330 52.000 50 24 0 1 50 77 126 1.34e-12 66.6
MS.gene018945.t1 AT3G27920 53.571 56 21 1 1 51 79 134 1.42e-12 65.5
MS.gene018945.t1 AT2G16720 65.000 40 14 0 1 40 77 116 1.52e-12 65.9
MS.gene018945.t1 AT5G14750 67.500 40 13 0 1 40 47 86 1.57e-12 63.9
MS.gene018945.t1 AT1G34670 61.905 42 16 0 2 43 78 119 1.67e-12 66.2
MS.gene018945.t1 AT1G22640 65.000 40 14 0 1 40 77 116 1.80e-12 65.5
MS.gene018945.t1 AT4G28110 60.976 41 16 0 2 42 78 118 1.93e-12 65.5
MS.gene018945.t1 AT4G09460 65.000 40 14 0 1 40 77 116 2.14e-12 65.1
MS.gene018945.t1 AT4G34990 65.000 40 14 0 1 40 77 116 2.45e-12 65.1
MS.gene018945.t1 AT5G14750 67.500 40 13 0 1 40 81 120 2.75e-12 63.9
MS.gene018945.t1 AT1G63910 61.905 42 16 0 1 42 77 118 3.09e-12 65.5
MS.gene018945.t1 AT1G18570 68.293 41 13 0 2 42 79 119 3.11e-12 65.5
MS.gene018945.t1 AT5G40330 67.500 40 13 0 1 40 77 116 3.16e-12 64.3
MS.gene018945.t1 AT2G31180 57.692 52 21 1 2 52 78 129 3.17e-12 64.7
MS.gene018945.t1 AT5G61420 65.000 40 14 0 1 40 77 116 3.29e-12 65.5
MS.gene018945.t1 AT3G23250 65.000 40 14 0 2 41 21 60 3.66e-12 64.3
MS.gene018945.t1 AT5G52600 66.667 39 13 0 1 39 77 115 4.15e-12 63.5
MS.gene018945.t1 AT5G07700 62.500 40 15 0 1 40 77 116 6.02e-12 64.7
MS.gene018945.t1 AT5G07700 62.500 40 15 0 1 40 77 116 6.02e-12 64.7
MS.gene018945.t1 AT1G56160 66.667 39 13 0 2 40 80 118 6.49e-12 64.3
MS.gene018945.t1 AT5G12870 54.348 46 21 0 1 46 83 128 7.89e-12 63.9
MS.gene018945.t1 AT1G74430 68.293 41 13 0 2 42 78 118 8.65e-12 63.5
MS.gene018945.t1 AT5G60890 68.293 41 13 0 2 42 78 118 9.21e-12 63.9
MS.gene018945.t1 AT4G22680 62.791 43 16 0 1 43 77 119 9.60e-12 63.5
MS.gene018945.t1 AT1G35515 60.000 40 16 0 1 40 77 116 1.04e-11 62.8
MS.gene018945.t1 AT5G35550 64.286 42 15 0 1 42 82 123 1.07e-11 63.2
MS.gene018945.t1 AT5G35550 64.286 42 15 0 1 42 79 120 1.28e-11 63.2
MS.gene018945.t1 AT3G08500 60.976 41 16 0 1 41 95 135 1.30e-11 63.5
MS.gene018945.t1 AT3G23250 65.000 40 14 0 2 41 78 117 1.37e-11 63.2
MS.gene018945.t1 AT5G10280 64.103 39 14 0 2 40 78 116 1.41e-11 63.5
MS.gene018945.t1 AT1G06180 69.231 39 12 0 2 40 78 116 1.77e-11 62.4
MS.gene018945.t1 AT5G07690 65.000 40 14 0 1 40 77 116 1.80e-11 63.2
MS.gene018945.t1 AT5G15310 32.800 125 66 4 8 119 5 124 1.94e-11 62.4
MS.gene018945.t1 AT2G47460 60.000 40 16 0 1 40 77 116 1.98e-11 63.2
MS.gene018945.t1 AT1G09540 61.905 42 16 0 1 42 77 118 2.05e-11 63.2
MS.gene018945.t1 AT2G47190 37.000 100 58 2 1 99 85 180 2.46e-11 62.4
MS.gene018945.t1 AT5G61420 66.667 36 12 0 5 40 2 37 2.57e-11 62.4
MS.gene018945.t1 AT5G26660 61.905 42 16 0 1 42 46 87 2.62e-11 62.8
MS.gene018945.t1 AT5G23000 67.500 40 13 0 1 40 78 117 2.88e-11 62.8
MS.gene018945.t1 AT5G26660 61.905 42 16 0 1 42 77 118 3.07e-11 62.8
MS.gene018945.t1 AT3G12820 63.415 41 15 0 2 42 32 72 3.50e-11 60.8
MS.gene018945.t1 AT5G56110 62.500 40 15 0 1 40 77 116 4.09e-11 62.0
MS.gene018945.t1 AT5G59780 61.538 39 15 0 1 39 8 46 4.41e-11 60.1
MS.gene018945.t1 AT1G66370 64.103 39 14 0 1 39 73 111 4.54e-11 61.2
MS.gene018945.t1 AT3G53200 64.103 39 14 0 1 39 41 79 4.60e-11 60.8
MS.gene018945.t1 AT3G13890 60.000 40 16 0 1 40 77 116 4.82e-11 62.0
MS.gene018945.t1 AT3G13890 60.000 40 16 0 1 40 86 125 5.43e-11 62.0
MS.gene018945.t1 AT1G25340 42.667 75 33 2 1 72 78 145 5.82e-11 61.2
MS.gene018945.t1 AT1G25340 42.667 75 33 2 1 72 83 150 6.57e-11 61.2
MS.gene018945.t1 AT3G46130 61.538 39 15 0 1 39 8 46 7.01e-11 60.1
MS.gene018945.t1 AT3G12820 63.415 41 15 0 2 42 80 120 7.25e-11 60.8
MS.gene018945.t1 AT3G62610 62.500 40 15 0 1 40 77 116 7.53e-11 61.6
MS.gene018945.t1 AT1G74080 60.976 41 16 0 2 42 78 118 7.99e-11 61.2
MS.gene018945.t1 AT1G25340 42.667 75 33 2 1 72 78 145 9.28e-11 60.8
MS.gene018945.t1 AT4G01680 63.415 41 15 0 1 41 77 117 9.35e-11 60.5

Find 34 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCATTGTCTGTTCTTTC+TGG 0.086645 3.3:-28216308 None:intergenic
TTGAGAACAATCAGAATTTA+AGG 0.139704 3.3:-28216738 None:intergenic
TCAAGTCCCTCTCATGTTTA+TGG 0.172493 3.3:+28216841 MS.gene018945:CDS
AAATTCAAGAAACTCCTTTA+TGG 0.223423 3.3:+28216622 MS.gene018945:CDS
AACTCCTTTATGGTAGTTAC+AGG 0.269651 3.3:+28216632 MS.gene018945:CDS
AACTCTATTCCTCAAGTAAA+AGG 0.271006 3.3:+28216410 MS.gene018945:CDS
CTCTCATGTTTATGGAGAAT+TGG 0.317349 3.3:+28216849 MS.gene018945:CDS
TGAGAGGGACTTGAGTTTCC+TGG 0.318683 3.3:-28216832 None:intergenic
GGGACTTGAGTTTCCTGGAT+TGG 0.393504 3.3:-28216827 None:intergenic
GTCTGTTCTTTCTGGAAGAT+AGG 0.396054 3.3:-28216300 None:intergenic
TCCTCAAGTAAAAGGTCAAT+GGG 0.432698 3.3:+28216418 MS.gene018945:CDS
TTCCTCAAGTAAAAGGTCAA+TGG 0.439466 3.3:+28216417 MS.gene018945:CDS
AGATCCTGTAACTACCATAA+AGG 0.458848 3.3:-28216636 None:intergenic
CTTAAGAAGATCAATCAAAC+AGG 0.475240 3.3:+28216365 MS.gene018945:CDS
TGAGCAGCCTCTTCATCAAA+AGG 0.486075 3.3:-28216872 None:intergenic
TAGCTAGATTACTCGAAAAG+TGG 0.506269 3.3:+28216567 MS.gene018945:CDS
TATTTCCTAAAAGTGCTTGA+AGG 0.508273 3.3:-28215526 None:intergenic
TTTCAGTGTTTGATGCATAT+GGG 0.509030 3.3:-28216541 None:intergenic
AGATCTAATGAACGTTTCAA+TGG 0.514885 3.3:+28216904 MS.gene018945:CDS
ACTATTGGAATACACATTTG+AGG 0.515179 3.3:+28216336 MS.gene018945:CDS
TCAATGGAGGAAAATACAGC+AGG 0.530896 3.3:+28216920 MS.gene018945:CDS
TGATTGTTCTCAATCTGTGT+CGG 0.532600 3.3:+28216748 MS.gene018945:CDS
ATATGAAAGTAAGCCAATCC+AGG 0.545648 3.3:+28216814 MS.gene018945:CDS
ACTTCAAACAGATATCCATA+TGG 0.546568 3.3:+28216448 MS.gene018945:CDS
TTCCTAAAAGTGCTTGAAGG+TGG 0.549309 3.3:-28215523 None:intergenic
TCAACAAAGAATCAAATACT+TGG 0.570464 3.3:-28216706 None:intergenic
TCTAATGAACGTTTCAATGG+AGG 0.584068 3.3:+28216907 MS.gene018945:CDS
ACAGGATCTAGTTCTAGTGA+AGG 0.595194 3.3:+28216650 MS.gene018945:CDS
TTCAGTGTTTGATGCATATG+GGG 0.607862 3.3:-28216540 None:intergenic
GGATCTAGTTCTAGTGAAGG+AGG 0.624680 3.3:+28216653 MS.gene018945:CDS
AATTCTCCATAAACATGAGA+GGG 0.633240 3.3:-28216847 None:intergenic
CAATTCTCCATAAACATGAG+AGG 0.644962 3.3:-28216848 None:intergenic
CAATGGAGGAAAATACAGCA+GGG 0.659954 3.3:+28216921 MS.gene018945:CDS
GGCAAAACAAGCTTTGTGTG+AGG 0.680287 3.3:+28216469 MS.gene018945:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAAGCAAAAAAAAAA+TGG - chr3.3:28216237-28216256 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGCAAAA+AGG - chr3.3:28216118-28216137 None:intergenic 10.0%
!! TTAATTCATGTGTAAAATTT+GGG - chr3.3:28215728-28215747 None:intergenic 15.0%
!!! ATAATTCATTTTCAACAATT+TGG - chr3.3:28215786-28215805 None:intergenic 15.0%
!!! TTTTTGTTTATAAGACAAAT+TGG - chr3.3:28215690-28215709 None:intergenic 15.0%
!! ACATATGAATTTATGTAGAT+GGG + chr3.3:28216265-28216284 MS.gene018945:intron 20.0%
!! CTTAATTCATGTGTAAAATT+TGG - chr3.3:28215729-28215748 None:intergenic 20.0%
!! TAAAGCAAAAAAAAAATGGT+GGG - chr3.3:28216233-28216252 None:intergenic 20.0%
!! TTAAAGCAAAAAAAAAATGG+TGG - chr3.3:28216234-28216253 None:intergenic 20.0%
!!! ATTTTACACATGAATTAAGT+CGG + chr3.3:28215730-28215749 MS.gene018945:intron 20.0%
!!! TAGATTTTCCTTTTAAGTTT+GGG + chr3.3:28216010-28216029 MS.gene018945:intron 20.0%
!!! TTAGATTTTCCTTTTAAGTT+TGG + chr3.3:28216009-28216028 MS.gene018945:intron 20.0%
!!! TTTTTTTTTTGCAAAAAGGT+TGG - chr3.3:28216114-28216133 None:intergenic 20.0%
! AAAGCAAAAAAAAAATGGTG+GGG - chr3.3:28216232-28216251 None:intergenic 25.0%
! AAATTCAAGAAACTCCTTTA+TGG + chr3.3:28216622-28216641 MS.gene018945:CDS 25.0%
! ACAATGACATCAAAAACTAT+TGG + chr3.3:28216321-28216340 MS.gene018945:CDS 25.0%
! GACATATGAATTTATGTAGA+TGG + chr3.3:28216264-28216283 MS.gene018945:intron 25.0%
! GTGAAATAAAAGATGAGATT+AGG - chr3.3:28215559-28215578 None:intergenic 25.0%
! TCAACAAAGAATCAAATACT+TGG - chr3.3:28216709-28216728 None:intergenic 25.0%
! TCGTCTATGAAAATGAAATT+TGG + chr3.3:28215891-28215910 MS.gene018945:intron 25.0%
! TTGAGAACAATCAGAATTTA+AGG - chr3.3:28216741-28216760 None:intergenic 25.0%
!! TTCATTTTCAACAATTTGGA+TGG - chr3.3:28215782-28215801 None:intergenic 25.0%
!!! AAAAGTATTGCAAAAGAATC+TGG - chr3.3:28215596-28215615 None:intergenic 25.0%
!!! GTTTGATTTTCAGCTAAAAT+AGG - chr3.3:28216518-28216537 None:intergenic 25.0%
AACTCTATTCCTCAAGTAAA+AGG + chr3.3:28216410-28216429 MS.gene018945:CDS 30.0%
AATTCTCCATAAACATGAGA+GGG - chr3.3:28216850-28216869 None:intergenic 30.0%
ACTATTGGAATACACATTTG+AGG + chr3.3:28216336-28216355 MS.gene018945:CDS 30.0%
ACTTCAAACAGATATCCATA+TGG + chr3.3:28216448-28216467 MS.gene018945:CDS 30.0%
AGAAAAAAGTTACTTGGCAA+TGG + chr3.3:28216775-28216794 MS.gene018945:CDS 30.0%
AGATCTAATGAACGTTTCAA+TGG + chr3.3:28216904-28216923 MS.gene018945:CDS 30.0%
ATTACTAAGATCGTCCAATT+TGG + chr3.3:28215831-28215850 MS.gene018945:intron 30.0%
CCTTACAAGATGATATTGTA+CGG + chr3.3:28216157-28216176 MS.gene018945:intron 30.0%
CTTAAGAAGATCAATCAAAC+AGG + chr3.3:28216365-28216384 MS.gene018945:CDS 30.0%
CTTACAAGATGATATTGTAC+GGG + chr3.3:28216158-28216177 MS.gene018945:intron 30.0%
GAAAAAAGTTACTTGGCAAT+GGG + chr3.3:28216776-28216795 MS.gene018945:CDS 30.0%
GAATCTGGAAATAAAAGAGA+AGG - chr3.3:28215581-28215600 None:intergenic 30.0%
GATGAAAAAACCCGAAAATT+CGG + chr3.3:28216589-28216608 MS.gene018945:CDS 30.0%
GGTTGAAGAAAAAAGTTACT+TGG + chr3.3:28216769-28216788 MS.gene018945:CDS 30.0%
TGTTTATAAGACAAATTGGC+TGG - chr3.3:28215686-28215705 None:intergenic 30.0%
TTTCAGTGTTTGATGCATAT+GGG - chr3.3:28216544-28216563 None:intergenic 30.0%
! AGCTACTTTAGAAATAGAGA+TGG + chr3.3:28215975-28215994 MS.gene018945:intron 30.0%
! CTCTCTTCTTGAATGAATTT+TGG + chr3.3:28216069-28216088 MS.gene018945:intron 30.0%
! TTTTCAACAATTTGGATGGA+AGG - chr3.3:28215778-28215797 None:intergenic 30.0%
! TTTTCAGCTAAAATAGGTGT+TGG - chr3.3:28216512-28216531 None:intergenic 30.0%
! TTTTCAGTGTTTGATGCATA+TGG - chr3.3:28216545-28216564 None:intergenic 30.0%
!! ATTTCTAAAGTAGCTAGTCT+TGG - chr3.3:28215970-28215989 None:intergenic 30.0%
!! CTTCTTGAATGAATTTTGGT+TGG + chr3.3:28216073-28216092 MS.gene018945:intron 30.0%
!! TATTTCCTAAAAGTGCTTGA+AGG - chr3.3:28215529-28215548 None:intergenic 30.0%
!! TTCAAGCACTTTTAGGAAAT+AGG + chr3.3:28215528-28215547 MS.gene018945:CDS 30.0%
AACTCCTTTATGGTAGTTAC+AGG + chr3.3:28216632-28216651 MS.gene018945:CDS 35.0%
AAGAGAGCAGAAGAAACAAA+AGG - chr3.3:28216056-28216075 None:intergenic 35.0%
AGAGAGCAGAAGAAACAAAA+GGG - chr3.3:28216055-28216074 None:intergenic 35.0%
AGATCCTGTAACTACCATAA+AGG - chr3.3:28216639-28216658 None:intergenic 35.0%
ATATGAAAGTAAGCCAATCC+AGG + chr3.3:28216814-28216833 MS.gene018945:CDS 35.0%
ATGTCATTGTCTGTTCTTTC+TGG - chr3.3:28216311-28216330 None:intergenic 35.0%
CAATTCTCCATAAACATGAG+AGG - chr3.3:28216851-28216870 None:intergenic 35.0%
CCAAAACTCCCAAACTTAAA+AGG - chr3.3:28216021-28216040 None:intergenic 35.0%
CCGTACAATATCATCTTGTA+AGG - chr3.3:28216160-28216179 None:intergenic 35.0%
CTCTCATGTTTATGGAGAAT+TGG + chr3.3:28216849-28216868 MS.gene018945:CDS 35.0%
GTCCAATTTGGATATTGTTG+CGG + chr3.3:28215843-28215862 MS.gene018945:intron 35.0%
TACCGCAACAATATCCAAAT+TGG - chr3.3:28215848-28215867 None:intergenic 35.0%
TAGCTAGATTACTCGAAAAG+TGG + chr3.3:28216567-28216586 MS.gene018945:CDS 35.0%
TCCTCAAGTAAAAGGTCAAT+GGG + chr3.3:28216418-28216437 MS.gene018945:CDS 35.0%
TCTAATGAACGTTTCAATGG+AGG + chr3.3:28216907-28216926 MS.gene018945:CDS 35.0%
TGATTGTTCTCAATCTGTGT+CGG + chr3.3:28216748-28216767 MS.gene018945:CDS 35.0%
TTCAGTGTTTGATGCATATG+GGG - chr3.3:28216543-28216562 None:intergenic 35.0%
TTCCTCAAGTAAAAGGTCAA+TGG + chr3.3:28216417-28216436 MS.gene018945:CDS 35.0%
! TGTTGTGTCATCCGAATTTT+CGG - chr3.3:28216603-28216622 None:intergenic 35.0%
!!! ACAAAGCTTGTTTTGCCATA+TGG - chr3.3:28216466-28216485 None:intergenic 35.0%
!!! CCTTTTAAGTTTGGGAGTTT+TGG + chr3.3:28216018-28216037 MS.gene018945:intron 35.0%
AGCAGAAGAAACAAAAGGGA+GGG - chr3.3:28216051-28216070 None:intergenic 40.0%
CAACAATTTGGATGGAAGGA+CGG - chr3.3:28215774-28215793 None:intergenic 40.0%
CAATGGAGGAAAATACAGCA+GGG + chr3.3:28216921-28216940 MS.gene018945:CDS 40.0%
TCAAGTCCCTCTCATGTTTA+TGG + chr3.3:28216841-28216860 MS.gene018945:CDS 40.0%
TCAATGGAGGAAAATACAGC+AGG + chr3.3:28216920-28216939 MS.gene018945:CDS 40.0%
TGCAAAAAGGTTGGATGCAA+AGG - chr3.3:28216105-28216124 None:intergenic 40.0%
! ATCCACCTTCAAGCACTTTT+AGG + chr3.3:28215521-28215540 MS.gene018945:CDS 40.0%
! GTCTGTTCTTTCTGGAAGAT+AGG - chr3.3:28216303-28216322 None:intergenic 40.0%
! GTTGTGTCATCCGAATTTTC+GGG - chr3.3:28216602-28216621 None:intergenic 40.0%
! TCCCATTGACCTTTTACTTG+AGG - chr3.3:28216422-28216441 None:intergenic 40.0%
!! ACAGGATCTAGTTCTAGTGA+AGG + chr3.3:28216650-28216669 MS.gene018945:CDS 40.0%
!! TAGCTAGTCTTGGTGAATTC+TGG - chr3.3:28215960-28215979 None:intergenic 40.0%
!! TTCCTAAAAGTGCTTGAAGG+TGG - chr3.3:28215526-28215545 None:intergenic 40.0%
!!! GAATTGGCCTTTTGATGAAG+AGG + chr3.3:28216865-28216884 MS.gene018945:CDS 40.0%
GAGCAGAAGAAACAAAAGGG+AGG - chr3.3:28216052-28216071 None:intergenic 45.0%
GCAGAAGAAACAAAAGGGAG+GGG - chr3.3:28216050-28216069 None:intergenic 45.0%
TGAGCAGCCTCTTCATCAAA+AGG - chr3.3:28216875-28216894 None:intergenic 45.0%
! GGCAAAACAAGCTTTGTGTG+AGG + chr3.3:28216469-28216488 MS.gene018945:CDS 45.0%
!! GGATCTAGTTCTAGTGAAGG+AGG + chr3.3:28216653-28216672 MS.gene018945:CDS 45.0%
GAAACAAAAGGGAGGGGACT+AGG - chr3.3:28216044-28216063 None:intergenic 50.0%
GGGACTTGAGTTTCCTGGAT+TGG - chr3.3:28216830-28216849 None:intergenic 50.0%
TGAGAGGGACTTGAGTTTCC+TGG - chr3.3:28216835-28216854 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 28215515 28216952 28215515 ID=MS.gene018945
chr3.3 mRNA 28215515 28216952 28215515 ID=MS.gene018945.t1;Parent=MS.gene018945
chr3.3 exon 28215515 28215549 28215515 ID=MS.gene018945.t1.exon1;Parent=MS.gene018945.t1
chr3.3 CDS 28215515 28215549 28215515 ID=cds.MS.gene018945.t1;Parent=MS.gene018945.t1
chr3.3 exon 28216283 28216952 28216283 ID=MS.gene018945.t1.exon2;Parent=MS.gene018945.t1
chr3.3 CDS 28216283 28216952 28216283 ID=cds.MS.gene018945.t1;Parent=MS.gene018945.t1
Gene Sequence

>MS.gene018945

ATGATAATCCACCTTCAAGCACTTTTAGGAAATAGGTACTACCTAATCTCATCTTTTATTTCACCTTCTCTTTTATTTCCAGATTCTTTTGCAATACTTTTTATTCTAAAGTTTGACAACTTAAGTGATAAACTTGAAATTTTTTCTTGAAATGTTTAGTTCTATAAACCAGCCAATTTGTCTTATAAACAAAAATTTGACTTTTTATTTCCCAAATTTTACACATGAATTAAGTCGGTGATGATTGCAAACTGTACCGTCCTTCCATCCAAATTGTTGAAAATGAATTATAGCTCAATCTAACAATTGAGATTTGATTACTAAGATCGTCCAATTTGGATATTGTTGCGGTATAACATTCATAAACATTAAAAGTTCGTCTATGAAAATGAAATTTGGTCTGAAAATATGCTTATAAGTAACGACATAGAGATTTGATGTACCAGAATTCACCAAGACTAGCTACTTTAGAAATAGAGATGGCTTGTCTATTTTTAGATTTTCCTTTTAAGTTTGGGAGTTTTGGCCTAGTCCCCTCCCTTTTGTTTCTTCTGCTCTCTTCTTGAATGAATTTTGGTTGGTTTGCTCCTTTGCATCCAACCTTTTTGCAAAAAAAAAAAAAAAAAGTAACAACACTTCTCACCTTACAAGATGATATTGTACGGGTTGAGCTAGTTTACTTCAAGTTCTAAGAATTAAAAGCAATAGATAGATCCCCACCATTTTTTTTTTGCTTTAATTAATTTTCTGACATATGAATTTATGTAGATGGGCTGCTATAGCTTCCTATCTTCCAGAAAGAACAGACAATGACATCAAAAACTATTGGAATACACATTTGAGGAAAAAGCTTAAGAAGATCAATCAAACAGGTGATGATAATGAAATAGAAGAAAACTCTATTCCTCAAGTAAAAGGTCAATGGGAGAGAAGACTTCAAACAGATATCCATATGGCAAAACAAGCTTTGTGTGAGGCACTTTCTCTTGACAAACCAACACCTATTTTAGCTGAAAATCAAACTTCCCCATATGCATCAAACACTGAAAACATAGCTAGATTACTCGAAAAGTGGATGAAAAAACCCGAAAATTCGGATGACACAACAAATTCAAGAAACTCCTTTATGGTAGTTACAGGATCTAGTTCTAGTGAAGGAGGACAGAATACTATAGCATGCAAACAAAAAGACCAAGTATTTGATTCTTTGTTGAGTTTTAATTCCTTAAATTCTGATTGTTCTCAATCTGTGTCGGTTGAAGAAAAAAGTTACTTGGCAATGGGTTCTTGCTTCTTTCAATATGAAAGTAAGCCAATCCAGGAAACTCAAGTCCCTCTCATGTTTATGGAGAATTGGCCTTTTGATGAAGAGGCTGCTCAGTGCAATGAAGATCTAATGAACGTTTCAATGGAGGAAAATACAGCAGGGTTGTTTTAG
Protein sequence

>MS.gene018945.t1

MIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLRKKLKKINQTGDDNEIEENSIPQVKGQWERRLQTDIHMAKQALCEALSLDKPTPILAENQTSPYASNTENIARLLEKWMKKPENSDDTTNSRNSFMVVTGSSSSEGGQNTIACKQKDQVFDSLLSFNSLNSDCSQSVSVEEKSYLAMGSCFFQYESKPIQETQVPLMFMENWPFDEEAAQCNEDLMNVSMEENTAGLF