AlfalfaGEDB | MS.gene018969

M. sativa cultivar XinJiangDaYe / MS.gene018969

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018969.t1	XP_013459385.1	100	92	0	0	1	92	1	92	2.20E-38	167.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018969.t1	Q9CA64	75.3	93	22	1	1	92	1	93	1.0e-28	127.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018969.t1	I3STA1	100.0	92	0	0	1	92	1	92	1.6e-38	167.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene018969.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018969.t1	MTR_3g438070	100.000	92	0	0	1	92	1	92	3.41e-60	178
MS.gene018969.t1	MTR_7g010120	72.340	94	23	2	1	92	1	93	9.01e-38	122
MS.gene018969.t1	MTR_5g039180	72.727	77	19	1	17	91	17	93	2.66e-33	110
MS.gene018969.t1	MTR_6g011670	73.077	78	19	1	17	92	15	92	1.58e-32	108
MS.gene018969.t1	MTR_7g059260	48.611	72	37	0	8	79	3	74	2.92e-11	54.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene018969.t1	AT3G47710	73.118	93	23	2	1	92	1	92	2.65e-39	125
MS.gene018969.t1	AT1G74500	77.922	77	16	1	17	92	17	93	9.44e-36	117
MS.gene018969.t1	AT1G26945	79.730	74	13	1	19	90	19	92	1.49e-34	114
MS.gene018969.t1	AT3G28857	65.957	94	27	3	1	91	1	92	1.45e-32	108
MS.gene018969.t1	AT5G39860	69.231	78	21	2	17	91	15	92	9.71e-30	102
MS.gene018969.t1	AT5G15160	66.667	75	22	2	19	90	18	92	2.48e-27	95.9

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Find 15 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATCATGGATCTGATCGT+CGG	0.643584	3.3:+29382521	None:intergenic
AGATGTCTAGCAGGAGGTCA+CGG	0.593324	3.3:-29382575	MS.gene018969:CDS
ATATCAGGTTTCAGCTTCGA+GGG	0.550730	3.3:-29381532	MS.gene018969:intron
CACGGCAAACGAGTAGCTCG+AGG	0.663514	3.3:-29382551	MS.gene018969:CDS
CTAGCAGGAGGTCACGGTCA+CGG	0.620916	3.3:-29382569	MS.gene018969:CDS
GAGCTCCTATTGCGAATCTC+TGG	0.433126	3.3:+29382474	None:intergenic
GCAACTTGGAGACAAGATCA+TGG	0.561243	3.3:+29382508	None:intergenic
GCTCAGACAAACGCTCACTT+AGG	0.559789	3.3:+29381457	None:intergenic
TATATCAGGTTTCAGCTTCG+AGG	0.481740	3.3:-29381533	MS.gene018969:intron
TCGCAATAGGAGCTCTGACA+AGG	0.593557	3.3:-29382466	MS.gene018969:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACTAGAGTAAGTATAAGA+GGG	-	chr3.3:29382210-29382229	MS.gene018969:intron	30.0%
ACATCAACAATTCTTGTAGA+TGG	+	chr3.3:29382350-29382369	None:intergenic	30.0%
ACCATACTTATTCACCTTTA+AGG	-	chr3.3:29382023-29382042	MS.gene018969:intron	30.0%
ACCTTAAAGGTGAATAAGTA+TGG	+	chr3.3:29382027-29382046	None:intergenic	30.0%
CATCAACAATTCTTGTAGAT+GGG	+	chr3.3:29382349-29382368	None:intergenic	30.0%
GGATAATGCATAATATATGC+AGG	-	chr3.3:29381978-29381997	MS.gene018969:intron	30.0%
TACACTAGAGTAAGTATAAG+AGG	-	chr3.3:29382209-29382228	MS.gene018969:intron	30.0%
AACTTAATCCTATAGGTCCA+GGG	-	chr3.3:29382243-29382262	MS.gene018969:intron	35.0%
AGCTCAGAAGGATTTCTTTA+CGG	+	chr3.3:29381942-29381961	None:intergenic	35.0%
ATATAGGCCTAACAAATACG+AGG	-	chr3.3:29382290-29382309	MS.gene018969:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	29381398	29382595	29381398	ID=MS.gene018969
chr3.3	mRNA	29381398	29382595	29381398	ID=MS.gene018969.t1;Parent=MS.gene018969
chr3.3	exon	29382467	29382595	29382467	ID=MS.gene018969.t1.exon1;Parent=MS.gene018969.t1
chr3.3	CDS	29382467	29382595	29382467	ID=cds.MS.gene018969.t1;Parent=MS.gene018969.t1
chr3.3	exon	29381398	29381547	29381398	ID=MS.gene018969.t1.exon2;Parent=MS.gene018969.t1
chr3.3	CDS	29381398	29381547	29381398	ID=cds.MS.gene018969.t1;Parent=MS.gene018969.t1

Gene Sequence

>MS.gene018969

ATGTCTAGCAGGAGGTCACGGTCACGGCAAACGAGTAGCTCGAGGAATATCACCGACGATCAGATCCATGATCTTGTCTCCAAGTTGCAGCAACTTCTTCCAGAGATTCGCAATAGGAGCTCTGACAAGGTTTGCTCCTACATATTATTTGTTTCCTAGTCATAATCAAAAGACTAGAGTATTTATTTTTGCTTCGTTTTTTGCTTAATTACATTCATATTATTCAATTAATGTGATTTTGTTGCTTAAATACACTACCATTATTTTTTATAAAAGTCATTGGTAAGAGATAAGTAGAAAAAAGTAAATGAAAACTATAATGATGATGAGAAGAATCTAAGCTCGTAACTACCATATACTATATTTTTAATACATAGAAGAGATTAGTTTTATAGCGGATCAAAGAATCTAAGCTTGTAGAGATACCCTATTAATCTACCGGAGAGTCAGCTCTAACTATGGTGGACTCCTAAAAGCTCACAAAACAGCTCTTAATATAATTTTGCTTATAAAAAAACAAAATTTAATTGAATAAAAAAAACCGTAAAGAAATCCTTCTGAGCTTAGTTCATTTGGTAAGGGATAATGCATAATATATGCAGGGACCGGAGTTCAAACCCCAGACACCATACTTATTCACCTTTAAGGTCTCTAGCCCCTAGGCTAATTGGGACCGGAGTTCGAACCCCAGACACCATACTTATTCACCTTTAAGGTCTCTGGCACCTAGGATAATTGACCAAGAAAAAAAAAAAAAAAAAACTTGAAAGGTGCAAGAGTGATTTTGTCATTTTTAAGCATCATAAATAAATACACTAGAGTAAGTATAAGAGGGTATTTAAACCAACTTAATCCTATAGGTCCAGGGACATACCAAAAAAAAGGAACAACAATATAGGCCTAACAAATACGAGGGGATTAAGTACTTCTATCTAGCACCAGTTTTTTCCCATCTACAAGAATTGTTGATGTTTTCAATTTTTAACTATATATTTTAAGAGAATAGTTAAATATATAGCATTTACTAAATTGAATTTTACTATATCAGGTTTCAGCTTCGAGGGTGTTGCAGGAGACTTGCAACTATATTAGAAACTTGAACAGAGAAGTTGACGACCTAAGTGAGCGTTTGTCTGAGCTATTGGCTACGACAGACACAGCACAAGCAGCAATAATTAGAAATTTACTTATGCAATAG

Protein sequence

>MS.gene018969.t1

MSSRRSRSRQTSSSRNITDDQIHDLVSKLQQLLPEIRNRSSDKVSASRVLQETCNYIRNLNREVDDLSERLSELLATTDTAQAAIIRNLLMQ