AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01906

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01906.t1 MTR_2g023340 75.728 206 41 3 151 352 31 231 1.29e-94 282
MS.gene01906.t1 MTR_2g023340 57.561 205 33 4 1 156 1 200 9.29e-66 208
MS.gene01906.t1 MTR_7g113680 47.727 176 82 5 186 354 133 305 7.26e-50 169
MS.gene01906.t1 MTR_7g113680 42.038 157 68 4 36 175 138 288 9.69e-30 116
MS.gene01906.t1 MTR_1g082660 59.167 120 47 2 186 305 82 199 1.87e-45 156
MS.gene01906.t1 MTR_1g082660 48.148 135 45 5 34 150 85 212 2.89e-31 119
MS.gene01906.t1 MTR_3g099180 65.657 99 34 0 187 285 37 135 2.42e-41 144
MS.gene01906.t1 MTR_3g099180 45.455 121 48 2 36 142 41 157 2.51e-25 102
MS.gene01906.t1 MTR_3g099180 65.657 99 34 0 187 285 37 135 2.65e-41 144
MS.gene01906.t1 MTR_3g099180 45.455 121 48 2 36 142 41 157 2.59e-25 102
MS.gene01906.t1 MTR_2g081600 51.648 91 43 1 204 293 21 111 1.25e-22 92.0
MS.gene01906.t1 MTR_2g081600 39.560 91 40 1 49 124 21 111 1.34e-12 64.3
MS.gene01906.t1 MTR_2g081630 58.228 79 32 1 204 281 21 99 1.29e-22 92.0
MS.gene01906.t1 MTR_2g081630 44.304 79 29 1 49 112 21 99 1.23e-12 64.3
MS.gene01906.t1 MTR_3g012030 42.308 78 45 0 206 283 9 86 1.81e-11 64.7
MS.gene01906.t1 MTR_8g041420 39.744 78 47 0 206 283 9 86 6.35e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01906.t1 AT1G54830 48.193 166 77 3 186 350 51 208 7.55e-46 156
MS.gene01906.t1 AT1G54830 50.820 122 43 3 36 142 56 175 4.91e-28 109
MS.gene01906.t1 AT1G54830 48.193 166 77 3 186 350 51 208 7.55e-46 156
MS.gene01906.t1 AT1G54830 50.820 122 43 3 36 142 56 175 4.91e-28 109
MS.gene01906.t1 AT1G54830 48.193 166 77 3 186 350 51 208 7.55e-46 156
MS.gene01906.t1 AT1G54830 50.820 122 43 3 36 142 56 175 4.91e-28 109
MS.gene01906.t1 AT1G08970 52.096 167 65 6 187 347 62 219 4.33e-45 154
MS.gene01906.t1 AT1G08970 52.991 117 34 3 36 138 66 175 4.83e-28 109
MS.gene01906.t1 AT1G08970 52.096 167 65 6 187 347 62 219 4.33e-45 154
MS.gene01906.t1 AT1G08970 52.991 117 34 3 36 138 66 175 4.83e-28 109
MS.gene01906.t1 AT1G08970 52.096 167 65 6 187 347 62 219 4.33e-45 154
MS.gene01906.t1 AT1G08970 52.991 117 34 3 36 138 66 175 4.83e-28 109
MS.gene01906.t1 AT1G08970 52.096 167 65 6 187 347 62 219 4.33e-45 154
MS.gene01906.t1 AT1G08970 52.991 117 34 3 36 138 66 175 4.83e-28 109
MS.gene01906.t1 AT1G56170 51.389 144 62 1 184 327 55 190 1.48e-44 152
MS.gene01906.t1 AT1G56170 47.154 123 46 4 34 140 60 179 1.41e-27 107
MS.gene01906.t1 AT1G56170 51.389 144 62 1 184 327 55 190 1.48e-44 152
MS.gene01906.t1 AT1G56170 47.154 123 46 4 34 140 60 179 1.41e-27 107
MS.gene01906.t1 AT5G63470 49.068 161 69 2 187 339 60 215 2.97e-42 147
MS.gene01906.t1 AT5G63470 45.968 124 50 2 36 142 64 187 8.85e-27 107
MS.gene01906.t1 AT5G63470 49.068 161 69 2 187 339 60 215 2.97e-42 147
MS.gene01906.t1 AT5G63470 45.968 124 50 2 36 142 64 187 8.85e-27 107
MS.gene01906.t1 AT3G48590 48.734 158 71 2 187 339 47 199 4.20e-42 147
MS.gene01906.t1 AT3G48590 45.455 121 52 1 36 142 51 171 7.74e-28 109
MS.gene01906.t1 AT5G50480 45.946 148 68 3 183 321 35 179 1.87e-35 128
MS.gene01906.t1 AT5G50480 43.590 117 46 4 43 142 47 160 7.21e-22 92.4
MS.gene01906.t1 AT5G27910 53.061 98 43 1 182 279 16 110 3.12e-29 111
MS.gene01906.t1 AT5G27910 37.594 133 55 4 45 161 31 151 8.60e-16 75.1
MS.gene01906.t1 AT5G50490 42.857 112 61 1 174 285 8 116 2.88e-25 101
MS.gene01906.t1 AT5G50490 37.209 86 40 1 45 116 31 116 2.00e-12 65.5
MS.gene01906.t1 AT5G50470 37.500 144 80 3 183 319 44 184 6.64e-23 95.5
MS.gene01906.t1 AT5G50470 37.069 116 53 2 45 140 58 173 2.74e-13 68.6
MS.gene01906.t1 AT5G38140 39.806 103 60 1 180 282 44 144 6.32e-21 89.7

Find 75 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCTTAATCCTTGTTAA+AGG 0.176954 2.1:-65217897 None:intergenic
ATTGGGACACTTTCTCTTCT+TGG 0.187927 2.1:-65218164 None:intergenic
ATTGGGACACCTTCTCTTCT+TGG 0.200965 2.1:-65219188 None:intergenic
AATGGAGCGTGACATATTTA+TGG 0.230451 2.1:+65218136 MS.gene01906:CDS
AATGGAGCGTGACATATTTA+TGG 0.230451 2.1:+65219160 MS.gene01906:CDS
TTTCTTGCTTTCTTTGGGTT+TGG 0.260736 2.1:-65219344 None:intergenic
GGCATGTGAAATGTTTATTA+TGG 0.268895 2.1:+65217980 MS.gene01906:intron
GGCATGTGAAATGTTTATTA+TGG 0.268895 2.1:+65219004 MS.gene01906:CDS
TGCCTCCACACGGATGCTTA+TGG 0.278314 2.1:+65219253 MS.gene01906:CDS
ATCGATGATTTCAAAACTAA+TGG 0.318284 2.1:+65217870 MS.gene01906:CDS
TAATAAGGAACATTTCCTAT+TGG 0.333389 2.1:-65218182 None:intergenic
GCCTCCACACGGATGCTTAT+GGG 0.341965 2.1:+65219254 MS.gene01906:CDS
AAGGAACATATATTCCCTAT+TGG 0.345891 2.1:-65219206 None:intergenic
AATAAGGAACATTTCCTATT+GGG 0.368793 2.1:-65218181 None:intergenic
ATCTTCTTAATCCTTGCTAA+TGG 0.378288 2.1:-65218921 None:intergenic
GGAAACATTGGATTAGCAAA+AGG 0.383920 2.1:-65219323 None:intergenic
AGAAGAGAAGGTGTCCCAAT+AGG 0.387819 2.1:+65219191 MS.gene01906:CDS
TTCTTTGGGTTTGGAAACAT+TGG 0.395372 2.1:-65219335 None:intergenic
GCCGGCATAGGCACATAATA+AGG 0.398907 2.1:-65218197 None:intergenic
GCCGGCATAGGCACATAATA+AGG 0.398907 2.1:-65219225 None:intergenic
ACTGTTGATTTCAAAAGTAA+TGG 0.437192 2.1:+65218894 MS.gene01906:CDS
AGGAACATATATTCCCTATT+GGG 0.437588 2.1:-65219205 None:intergenic
ATGGAGCGTGACATATTTAT+GGG 0.438860 2.1:+65218137 MS.gene01906:CDS
ATGGAGCGTGACATATTTAT+GGG 0.438860 2.1:+65219161 MS.gene01906:CDS
GAAACATTGGATTAGCAAAA+GGG 0.448257 2.1:-65219322 None:intergenic
GAAGAGAAGGTGTCCCAATA+GGG 0.451739 2.1:+65219192 MS.gene01906:CDS
AGAAGAGAAAGTGTCCCAAT+AGG 0.459132 2.1:+65218167 MS.gene01906:CDS
TCCTTATTATGTGCCTATGC+CGG 0.483112 2.1:+65218196 MS.gene01906:CDS
TCCTTATTATGTGCCTATGC+CGG 0.483112 2.1:+65219224 MS.gene01906:CDS
CATGCCTTAGCAAACAGAAT+AGG 0.486382 2.1:-65218987 None:intergenic
CCTAGTTGATATTGTCCCTA+GGG 0.487741 2.1:+65218106 MS.gene01906:CDS
CCTAGTTGATATTGTCCCTA+GGG 0.487741 2.1:+65219130 MS.gene01906:CDS
CTCTACTCAAGTAGGATGAA+AGG 0.497261 2.1:-65218773 None:intergenic
TGGAGCTAGCAACAAGGTCA+TGG 0.501489 2.1:+65218000 MS.gene01906:CDS
TGGAGCTAGCAACAAGGTCA+TGG 0.501489 2.1:+65219024 MS.gene01906:CDS
TCAACCAACGTAATTACAAC+GGG 0.501937 2.1:+65219288 MS.gene01906:CDS
TCTACTCAAGTAGGATGAAA+GGG 0.502919 2.1:-65218772 None:intergenic
AAGATCATGAAAACAGAAGA+AGG 0.505724 2.1:+65217915 MS.gene01906:CDS
AAGATCATGAAAACAGAAGA+AGG 0.505724 2.1:+65218939 MS.gene01906:CDS
CCATTTCCTTGTGTTTGTGT+CGG 0.510791 2.1:-65217655 None:intergenic
CCCTAGGGACAATATCAACT+AGG 0.511793 2.1:-65218106 None:intergenic
CCCTAGGGACAATATCAACT+AGG 0.511793 2.1:-65219130 None:intergenic
CCGACACAAACACAAGGAAA+TGG 0.516181 2.1:+65217655 MS.gene01906:CDS
GAGTTGAACTCTACTCAAGT+AGG 0.528625 2.1:-65218781 None:intergenic
GGCACCTATTCTGTTTGCTA+AGG 0.530640 2.1:+65218983 MS.gene01906:CDS
CCGTGTGGAGGCATATGAGC+CGG 0.534035 2.1:-65219243 None:intergenic
TACTGAGGTGGCATATGAGC+CGG 0.534480 2.1:-65218215 None:intergenic
CTAATGGCTTACCTTTAACA+AGG 0.540251 2.1:+65217886 MS.gene01906:CDS
AAAAGACACAAGAGGAAGGA+AGG 0.546935 2.1:+65217623 MS.gene01906:CDS
ATGCCACCTCAGTATGATGC+AGG 0.555708 2.1:+65218224 MS.gene01906:CDS
TCCTAGTTGATATTGTCCCT+AGG 0.558927 2.1:+65218105 MS.gene01906:CDS
TCCTAGTTGATATTGTCCCT+AGG 0.558927 2.1:+65219129 MS.gene01906:CDS
TCCCATAAGCATCCGTGTGG+AGG 0.573460 2.1:-65219255 None:intergenic
GGTGGCATATGAGCCGGCAT+AGG 0.576392 2.1:-65218209 None:intergenic
GGAGGCATATGAGCCGGCAT+AGG 0.579113 2.1:-65219237 None:intergenic
GGAGCTAGCAACAAGGTCAT+GGG 0.582315 2.1:+65218001 MS.gene01906:CDS
GGAGCTAGCAACAAGGTCAT+GGG 0.582315 2.1:+65219025 MS.gene01906:CDS
GTAATGGCTTGCCATTAGCA+AGG 0.597965 2.1:+65218910 MS.gene01906:CDS
GATCAAAAGACACAAGAGGA+AGG 0.602500 2.1:+65217619 MS.gene01906:CDS
GCTGCCCGTTGTAATTACGT+TGG 0.611424 2.1:-65219292 None:intergenic
ATGGGTATACCAAGAAGAGA+AGG 0.611937 2.1:+65219179 MS.gene01906:CDS
CTCAACCAACGTAATTACAA+CGG 0.619206 2.1:+65219287 MS.gene01906:CDS
CATGGATCAAAAGACACAAG+AGG 0.636214 2.1:+65217615 None:intergenic
AAGGTCATGGGCTAATACAG+AGG 0.637560 2.1:+65218013 MS.gene01906:CDS
AAGGTCATGGGCTAATACAG+AGG 0.637560 2.1:+65219037 MS.gene01906:CDS
ATTGGATTAGCAAAAGGGTG+TGG 0.642492 2.1:-65219317 None:intergenic
CCGGCTCATATGCCTCCACA+CGG 0.643904 2.1:+65219243 MS.gene01906:CDS
GGATTAGCAAAAGGGTGTGG+TGG 0.678099 2.1:-65219314 None:intergenic
AGTGAGTATGATATCAGCTG+AGG 0.690629 2.1:+65218962 MS.gene01906:CDS
TTATTATGGAGCTAGCAACA+AGG 0.697305 2.1:+65217994 MS.gene01906:CDS
TTATTATGGAGCTAGCAACA+AGG 0.697305 2.1:+65219018 MS.gene01906:CDS
GATACACCGACACAAACACA+AGG 0.704612 2.1:+65217649 MS.gene01906:CDS
GGACCTGCATCATACTGAGG+TGG 0.712395 2.1:-65218227 None:intergenic
TCTTCCCATAAGCATCCGTG+TGG 0.713204 2.1:-65219258 None:intergenic
GATGGACCTGCATCATACTG+AGG 0.765521 2.1:-65218230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATTAAATTATTGCA+AGG - chr2.1:65218541-65218560 None:intergenic 15.0%
!!! ATTTTTCAAAATCAACATAA+TGG - chr2.1:65218373-65218392 None:intergenic 15.0%
!! CATAGTTTAAACAATTCAAT+CGG - chr2.1:65218461-65218480 None:intergenic 20.0%
!!! CTATTTAGTTTGATTGATTT+TGG - chr2.1:65218710-65218729 None:intergenic 20.0%
!!! TATAGAAATGTTTTGAAAAG+AGG - chr2.1:65218506-65218525 None:intergenic 20.0%
!!! TTTGATACATATTGTTGTTA+TGG - chr2.1:65218629-65218648 None:intergenic 20.0%
! AATAAGGAACATTTCCTATT+GGG - chr2.1:65218184-65218203 None:intergenic 25.0%
! ATCGATGATTTCAAAACTAA+TGG + chr2.1:65217870-65217889 MS.gene01906:CDS 25.0%
! ATCTTCTTAATCCTTGTTAA+AGG - chr2.1:65217900-65217919 None:intergenic 25.0%
! GAATTGTTTAAACTATGACT+TGG + chr2.1:65218464-65218483 MS.gene01906:intron 25.0%
! TAATAAGGAACATTTCCTAT+TGG - chr2.1:65218185-65218204 None:intergenic 25.0%
!!! ACTGTTGATTTCAAAAGTAA+TGG + chr2.1:65218894-65218913 MS.gene01906:CDS 25.0%
!!! ATTCTTGTTGTTTTTGTTGT+CGG - chr2.1:65218821-65218840 None:intergenic 25.0%
!!! CTATTTGGTTTAATTGGTTT+TGG - chr2.1:65217687-65217706 None:intergenic 25.0%
AAGATCATGAAAACAGAAGA+AGG + chr2.1:65217915-65217934 MS.gene01906:CDS 30.0%
AAGGAACATATATTCCCTAT+TGG - chr2.1:65219209-65219228 None:intergenic 30.0%
AGGAACATATATTCCCTATT+GGG - chr2.1:65219208-65219227 None:intergenic 30.0%
ATCTTCTTAATCCTTGCTAA+TGG - chr2.1:65218924-65218943 None:intergenic 30.0%
GGCATGTGAAATGTTTATTA+TGG + chr2.1:65217980-65217999 MS.gene01906:intron 30.0%
TATGTATCAAAACACACAAG+AGG + chr2.1:65218638-65218657 MS.gene01906:intron 30.0%
! AGAAAAAACTTGGCATCTTT+TGG + chr2.1:65217821-65217840 MS.gene01906:CDS 30.0%
! GAAAAAACTTGGCATCTTTT+GGG + chr2.1:65217822-65217841 MS.gene01906:CDS 30.0%
! GTGACACTATTTGGTTTAAT+TGG - chr2.1:65217693-65217712 None:intergenic 30.0%
!! GAAACATTGGATTAGCAAAA+GGG - chr2.1:65219325-65219344 None:intergenic 30.0%
!! GAAACATTTGATTTGCAAGA+GGG - chr2.1:65218328-65218347 None:intergenic 30.0%
!!! TTCATTTTGTTTTGACCAGA+AGG - chr2.1:65218862-65218881 None:intergenic 30.0%
AATGGAGCGTGACATATTTA+TGG + chr2.1:65218136-65218155 MS.gene01906:CDS 35.0%
AATGTTTCCAATCCAAAAGC+AGG + chr2.1:65218340-65218359 MS.gene01906:intron 35.0%
AGAAAAAACTTGACACCTTC+TGG + chr2.1:65218844-65218863 MS.gene01906:CDS 35.0%
ATGGAGCGTGACATATTTAT+GGG + chr2.1:65218137-65218156 MS.gene01906:CDS 35.0%
ATTCTTGGAGGACTATATGA+TGG - chr2.1:65218251-65218270 None:intergenic 35.0%
CAAGAACTGCAGAAAAAACT+TGG + chr2.1:65217811-65217830 MS.gene01906:CDS 35.0%
CATCAACAGTGTGAAACAAA+GGG - chr2.1:65217723-65217742 None:intergenic 35.0%
CTAATGGCTTACCTTTAACA+AGG + chr2.1:65217886-65217905 MS.gene01906:CDS 35.0%
CTCAACCAACGTAATTACAA+CGG + chr2.1:65219287-65219306 MS.gene01906:CDS 35.0%
TCAACCAACGTAATTACAAC+GGG + chr2.1:65219288-65219307 MS.gene01906:CDS 35.0%
TCTACTCAAGTAGGATGAAA+GGG - chr2.1:65218775-65218794 None:intergenic 35.0%
TCTACTCATGTAGGATGAAA+AGG - chr2.1:65217752-65217771 None:intergenic 35.0%
TTATTATGGAGCTAGCAACA+AGG + chr2.1:65217994-65218013 MS.gene01906:CDS 35.0%
! TTCTTTGGGTTTGGAAACAT+TGG - chr2.1:65219338-65219357 None:intergenic 35.0%
! TTTCTTGCTTTCTTTGGGTT+TGG - chr2.1:65219347-65219366 None:intergenic 35.0%
!! AATGGTCATTTTCCTGCTTT+TGG - chr2.1:65218355-65218374 None:intergenic 35.0%
!! GGAAACATTGGATTAGCAAA+AGG - chr2.1:65219326-65219345 None:intergenic 35.0%
!! GGAAACATTTGATTTGCAAG+AGG - chr2.1:65218329-65218348 None:intergenic 35.0%
!! TCATTTTCCTGCTTTTGGAT+TGG - chr2.1:65218350-65218369 None:intergenic 35.0%
AAAACACACAAGAGGAACGA+AGG + chr2.1:65218646-65218665 MS.gene01906:intron 40.0%
AAAAGACACAAGAGGAAGGA+AGG + chr2.1:65217623-65217642 MS.gene01906:CDS 40.0%
AACTCCAAGAATTCTCTCAC+CGG + chr2.1:65217776-65217795 MS.gene01906:intron 40.0%
AGTCCTCCAAGAATGCTTAT+GGG + chr2.1:65218257-65218276 MS.gene01906:intron 40.0%
AGTGAGTATGATATCAGCTG+AGG + chr2.1:65217938-65217957 MS.gene01906:intron 40.0%
ATGGGTATACCAAGAAGAGA+AGG + chr2.1:65218155-65218174 MS.gene01906:CDS 40.0%
ATTGGGACACTTTCTCTTCT+TGG - chr2.1:65218167-65218186 None:intergenic 40.0%
CACCTGCAGTGTAAAACAAA+GGG - chr2.1:65218746-65218765 None:intergenic 40.0%
CATGCCTTAGCAAACAGAAT+AGG - chr2.1:65217966-65217985 None:intergenic 40.0%
CCATTTCCTTGTGTTTGTGT+CGG - chr2.1:65217658-65217677 None:intergenic 40.0%
CTCTACTCAAGTAGGATGAA+AGG - chr2.1:65218776-65218795 None:intergenic 40.0%
GAGTTGAACTCTACTCAAGT+AGG - chr2.1:65218784-65218803 None:intergenic 40.0%
GATCAAAAGACACAAGAGGA+AGG + chr2.1:65217619-65217638 MS.gene01906:CDS 40.0%
GCATCAACAGTGTGAAACAA+AGG - chr2.1:65217724-65217743 None:intergenic 40.0%
TAGTCCTCCAAGAATGCTTA+TGG + chr2.1:65218256-65218275 MS.gene01906:intron 40.0%
TCAATCAGCCTCATAACAAC+AGG + chr2.1:65218291-65218310 MS.gene01906:intron 40.0%
TCCTTATTATGTGCCTATGC+CGG + chr2.1:65218196-65218215 MS.gene01906:CDS 40.0%
TGTCCCTAGGGAAAAAACAA+TGG + chr2.1:65218118-65218137 MS.gene01906:CDS 40.0%
TTATGAGGCTGATTGAGAGA+AGG - chr2.1:65218287-65218306 None:intergenic 40.0%
! CCTAGTTGATATTGTCCCTA+GGG + chr2.1:65218106-65218125 MS.gene01906:CDS 40.0%
! TCCTAGTTGATATTGTCCCT+AGG + chr2.1:65218105-65218124 MS.gene01906:CDS 40.0%
!! AGAAGAGAAAGTGTCCCAAT+AGG + chr2.1:65218167-65218186 MS.gene01906:CDS 40.0%
!! ATTGGATTAGCAAAAGGGTG+TGG - chr2.1:65219320-65219339 None:intergenic 40.0%
!! GTTCTTGTTGTTTCTGTTGC+CGG - chr2.1:65217798-65217817 None:intergenic 40.0%
!!! GCTCCATTGTTTTTTCCCTA+GGG - chr2.1:65218124-65218143 None:intergenic 40.0%
!!! GTTGTCGGTGAGAGATTTTT+TGG - chr2.1:65218806-65218825 None:intergenic 40.0%
ATTGGGACACCTTCTCTTCT+TGG - chr2.1:65219191-65219210 None:intergenic 45.0%
CCAACACAAACACAAGCAAG+TGG + chr2.1:65218678-65218697 MS.gene01906:intron 45.0%
CCACTTGCTTGTGTTTGTGT+TGG - chr2.1:65218681-65218700 None:intergenic 45.0%
CCCTAGGGACAATATCAACT+AGG - chr2.1:65218109-65218128 None:intergenic 45.0%
CCGACACAAACACAAGGAAA+TGG + chr2.1:65217655-65217674 MS.gene01906:CDS 45.0%
GAGTTGAGCTCTACTCATGT+AGG - chr2.1:65217761-65217780 None:intergenic 45.0%
GATACACCGACACAAACACA+AGG + chr2.1:65217649-65217668 MS.gene01906:CDS 45.0%
GCACCTGCAGTGTAAAACAA+AGG - chr2.1:65218747-65218766 None:intergenic 45.0%
GGCGAGATAGTGACACTATT+TGG - chr2.1:65217702-65217721 None:intergenic 45.0%
GGTGTTCCCATAAGCATTCT+TGG - chr2.1:65218266-65218285 None:intergenic 45.0%
GTTCCCATAAGCATTCTTGG+AGG - chr2.1:65218263-65218282 None:intergenic 45.0%
! AAGGTCATGGGCTAATACAG+AGG + chr2.1:65218013-65218032 MS.gene01906:CDS 45.0%
! GGCACCTATTCTGTTTGCTA+AGG + chr2.1:65217959-65217978 MS.gene01906:intron 45.0%
! GTAATGGCTTGCCATTAGCA+AGG + chr2.1:65218910-65218929 MS.gene01906:CDS 45.0%
! TGATTTGCAAGAGGGTGTGA+GGG - chr2.1:65218320-65218339 None:intergenic 45.0%
!! AGAAGAGAAGGTGTCCCAAT+AGG + chr2.1:65219191-65219210 MS.gene01906:CDS 45.0%
!! GAAGAGAAGGTGTCCCAATA+GGG + chr2.1:65219192-65219211 MS.gene01906:CDS 45.0%
!! TTGATTTGCAAGAGGGTGTG+AGG - chr2.1:65218321-65218340 None:intergenic 45.0%
!!! CGCTCCATTGTTTTTTCCCT+AGG - chr2.1:65218125-65218144 None:intergenic 45.0%
ATGCCACCTCAGTATGATGC+AGG + chr2.1:65218224-65218243 MS.gene01906:CDS 50.0%
GATGGACCTGCATCATACTG+AGG - chr2.1:65218233-65218252 None:intergenic 50.0%
GCCGGCATAGGCACATAATA+AGG - chr2.1:65218200-65218219 None:intergenic 50.0%
GCTGCCCGTTGTAATTACGT+TGG - chr2.1:65219295-65219314 None:intergenic 50.0%
GGAGCTAGCAACAAGGTCAT+GGG + chr2.1:65218001-65218020 MS.gene01906:CDS 50.0%
GTTGCCGGTGAGAGAATTCT+TGG - chr2.1:65217783-65217802 None:intergenic 50.0%
TACTGAGGTGGCATATGAGC+CGG - chr2.1:65218218-65218237 None:intergenic 50.0%
TCTTCCCATAAGCATCCGTG+TGG - chr2.1:65219261-65219280 None:intergenic 50.0%
TGGAGCTAGCAACAAGGTCA+TGG + chr2.1:65218000-65218019 MS.gene01906:CDS 50.0%
! GGATTAGCAAAAGGGTGTGG+TGG - chr2.1:65219317-65219336 None:intergenic 50.0%
!!! CGCCCTTTGTTTTACACTGC+AGG + chr2.1:65218741-65218760 MS.gene01906:intron 50.0%
GAGGGCTGCCTGTTGTTATG+AGG - chr2.1:65218302-65218321 None:intergenic 55.0%
GCCTCCACACGGATGCTTAT+GGG + chr2.1:65219254-65219273 MS.gene01906:CDS 55.0%
GGACCTGCATCATACTGAGG+TGG - chr2.1:65218230-65218249 None:intergenic 55.0%
TCCCATAAGCATCCGTGTGG+AGG - chr2.1:65219258-65219277 None:intergenic 55.0%
TGCCTCCACACGGATGCTTA+TGG + chr2.1:65219253-65219272 MS.gene01906:CDS 55.0%
CCGGCTCATATGCCTCCACA+CGG + chr2.1:65219243-65219262 MS.gene01906:CDS 60.0%
GGTGGCATATGAGCCGGCAT+AGG - chr2.1:65218212-65218231 None:intergenic 60.0%
! CCGTGTGGAGGCATATGAGC+CGG - chr2.1:65219246-65219265 None:intergenic 60.0%
! GGAGGCATATGAGCCGGCAT+AGG - chr2.1:65219240-65219259 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 65217616 65219370 65217616 ID=MS.gene01906
chr2.1 mRNA 65217616 65219370 65217616 ID=MS.gene01906.t1;Parent=MS.gene01906
chr2.1 exon 65217616 65217676 65217616 ID=MS.gene01906.t1.exon1;Parent=MS.gene01906.t1
chr2.1 CDS 65217616 65217676 65217616 ID=cds.MS.gene01906.t1;Parent=MS.gene01906.t1
chr2.1 exon 65217805 65217938 65217805 ID=MS.gene01906.t1.exon2;Parent=MS.gene01906.t1
chr2.1 CDS 65217805 65217938 65217805 ID=cds.MS.gene01906.t1;Parent=MS.gene01906.t1
chr2.1 exon 65217981 65218245 65217981 ID=MS.gene01906.t1.exon3;Parent=MS.gene01906.t1
chr2.1 CDS 65217981 65218245 65217981 ID=cds.MS.gene01906.t1;Parent=MS.gene01906.t1
chr2.1 exon 65218763 65219370 65218763 ID=MS.gene01906.t1.exon4;Parent=MS.gene01906.t1
chr2.1 CDS 65218763 65219370 65218763 ID=cds.MS.gene01906.t1;Parent=MS.gene01906.t1
Gene Sequence

>MS.gene01906

ATGGATCAAAAGACACAAGAGGAAGGAAGGAATGATACACCGACACAAACACAAGGAAATGGTGAGAACCAAAACCAATTAAACCAAATAGTGTCACTATCTCGCCCTTTGTTTCACACTGTTGATGCTTCTGCCTTTTCATCCTACATGAGTAGAGCTCAACTCCAAGAATTCTCTCACCGGCAACAGAAACAACAAGAACTGCAGAAAAAACTTGGCATCTTTTGGGAAAACAAAATGATGAAATTGTGAAGATCGATGATTTCAAAACTAATGGCTTACCTTTAACAAGGATTAAGAAGATCATGAAAACAGAAGAAGGAGTGAGTATGATATCAGCTGAGGCACCTATTCTGTTTGCTAAGGCATGTGAAATGTTTATTATGGAGCTAGCAACAAGGTCATGGGCTAATACAGAGGTGAACAAAAGAAAGACACTTCAAAAGAGTGACATTGCATCTGCTGTCTCAAGTAATGAAGTGTTTGATTTCCTAGTTGATATTGTCCCTAGGGAAAAAACAATGGAGCGTGACATATTTATGGGTATACCAAGAAGAGAAAGTGTCCCAATAGGAAATGTTCCTTATTATGTGCCTATGCCGGCTCATATGCCACCTCAGTATGATGCAGGTCCATCATATAGTCCTCCAAGAATGCTTATGGGAACACCTTCTCTCAATCAGCCTCATAACAACAGGCAGCCCTCACACCCTCTTGCAAATCAAATGTTTCCAATCCAAAAGCAGGAAAATGACCATTATGTTGATTTTGAAAAATTATTTGTATTAAAAAAAACATTTTCTTACTTTGTTTATTTGTCATCTAGTTCAATTACAGTTGAACCGATTGAATTGTTTAAACTATGACTTGGAAATTCGATTTCAACTCCTCTTTTCAAAACATTTCTATATACTAACAGTTTCCTTGCAATAATTTAATTTTCTTTTCAATAATGCTTTGATTTTGTTTCTTCTGCATCTAAATGATCAAAGAATATATATTTTGTAGTTCCATAACAACAATATGTATCAAAACACACAAGAGGAACGAAGGAATGATACACCAACACAAACACAAGCAAGTGGCGAGAACCAAAATCAATCAAACTAAATAGCGTCACTATCTCGCCCTTTGTTTTACACTGCAGGTGCTTCTACCCTTTCATCCTACTTGAGTAGAGTTCAACTCCAAAAAATCTCTCACCGACAACAAAAACAACAAGAATTGCAGAAAAAACTTGACACCTTCTGGTCAAAACAAAATGAAGAAGTTCAGAAGACTGTTGATTTCAAAAGTAATGGCTTGCCATTAGCAAGGATTAAGAAGATCATGAAAACAGAAGAAGGAGTGAGTATGATATCAGCTGAGGCACCTATTCTGTTTGCTAAGGCATGTGAAATGTTTATTATGGAGCTAGCAACAAGGTCATGGGCTAATACAGAGGTGAACAAAAGAAAGACACTTCAAAAGAGTGACATTGCATCTGCTGTCTCAAGTAATGAAGTGTTTGATTTCCTAGTTGATATTGTCCCTAGGGAAAAAACAATGGAGCGTGACATATTTATGGGTATACCAAGAAGAGAAGGTGTCCCAATAGGGAATATATGTTCCTTATTATGTGCCTATGCCGGCTCATATGCCTCCACACGGATGCTTATGGGAAGATATCTTCTCAACCAACGTAATTACAACGGGCAGCCACCACACCCTTTTGCTAATCCAATGTTTCCAAACCCAAAGAAAGCAAGAAAATGA
Protein sequence

>MS.gene01906.t1

MDQKTQEEGRNDTPTQTQGNETTRTAEKTWHLLGKQNDEIVKIDDFKTNGLPLTRIKKIMKTEEGACEMFIMELATRSWANTEVNKRKTLQKSDIASAVSSNEVFDFLVDIVPREKTMERDIFMGIPRRESVPIGNVPYYVPMPAHMPPQYDAGASTLSSYLSRVQLQKISHRQQKQQELQKKLDTFWSKQNEEVQKTVDFKSNGLPLARIKKIMKTEEGVSMISAEAPILFAKACEMFIMELATRSWANTEVNKRKTLQKSDIASAVSSNEVFDFLVDIVPREKTMERDIFMGIPRREGVPIGNICSLLCAYAGSYASTRMLMGRYLLNQRNYNGQPPHPFANPMFPNPKKARK