AlfalfaGEDB | MS.gene019084

M. sativa cultivar XinJiangDaYe / MS.gene019084

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00954.23 PF07714.20 PF08276.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019084.t1	XP_013442779.1	82.5	560	97	1	1	559	155	714	1.10E-259	905.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019084.t1	O81832	49.5	560	242	4	1	559	162	681	1.0e-155	551.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019084.t1	A0A072TTD3	82.5	560	97	1	1	559	155	714	8.3e-260	905.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene019084.t1	MTR_0090s0020	81.786	560	101	1	1	559	155	714	971
MS.gene019084.t1	MTR_0090s0020	81.786	560	101	1	1	559	155	714	971
MS.gene019084.t1	MTR_0090s0020	81.786	560	101	1	1	559	155	714	970
MS.gene019084.t1	MTR_0090s0020	80.354	509	99	1	1	508	155	663	870
MS.gene019084.t1	MTR_5g055070	67.742	558	179	1	1	557	156	713	808
MS.gene019084.t1	MTR_5g055070	67.742	558	179	1	1	557	156	713	808
MS.gene019084.t1	MTR_5g067250	68.093	561	167	5	1	557	164	716	773
MS.gene019084.t1	MTR_8g465980	67.023	561	173	3	1	559	157	707	771
MS.gene019084.t1	MTR_5g055070	64.273	557	158	1	1	557	156	671	760
MS.gene019084.t1	MTR_3g007650	60.801	574	206	8	1	559	172	741	706

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019084.t1	AT4G27290	50.352	568	271	4	1	559	162	727	0.0	573
MS.gene019084.t1	AT4G27290	49.643	560	241	4	1	559	162	681	0.0	553
MS.gene019084.t1	AT4G21380	47.241	580	279	7	1	558	167	741	3.35e-180	530
MS.gene019084.t1	AT1G11340	48.542	583	268	11	1	559	223	797	1.49e-177	521
MS.gene019084.t1	AT1G11340	48.542	583	268	11	1	559	155	729	4.91e-177	521
MS.gene019084.t1	AT1G65800	47.160	581	279	8	1	559	165	739	3.34e-174	514
MS.gene019084.t1	AT1G65790	47.931	580	276	8	1	559	161	735	3.20e-173	511
MS.gene019084.t1	AT4G27300	50.176	568	261	11	1	559	162	716	9.23e-172	507
MS.gene019084.t1	AT1G11410	46.667	585	281	9	1	559	43	622	1.82e-170	501
MS.gene019084.t1	AT1G11410	46.667	585	281	9	1	559	134	713	2.38e-169	501

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Find 103 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTTATATGTTCGAA+TGG	0.566797	3.4:-37773341	MS.gene019084:CDS
AAAAGGCTTTCAAGGAGTTC+TGG	0.405912	3.4:-37771598	MS.gene019084:CDS
AAATCAGATGTATTTAGCTT+TGG	0.395433	3.4:-37770945	MS.gene019084:CDS
AACAGTGGAATGCAATGGAC+TGG	0.537795	3.4:-37773621	MS.gene019084:CDS
AACCGACAATACTACTGTTT+TGG	0.308892	3.4:+37772889	None:intergenic
AACTATCTTGTGGTAAGATT+TGG	0.307810	3.4:+37773740	None:intergenic
AACTCTATAGGACAGCACCA+TGG	0.671553	3.4:-37773963	MS.gene019084:CDS
AAGCTTGGGGAAGGCGGTTT+TGG	0.213522	3.4:-37771786	MS.gene019084:CDS
AAGGCTCAACAAAACTCTAT+AGG	0.438625	3.4:-37773975	MS.gene019084:CDS
AATCCATCAGTGGCATATTC+TGG	0.347641	3.4:+37770978	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTATCTTGTGGTAAGATT+TGG	+	chr3.4:37771234-37771253	None:intergenic	30.0%
AGAAAATAGAGAAGATCACA+AGG	-	chr3.4:37773063-37773082	MS.gene019084:intron	30.0%
ATAATCGCAGGTGATAAAAA+TGG	-	chr3.4:37772054-37772073	MS.gene019084:intron	30.0%
ATCTCCATCAATAAGACAAT+AGG	+	chr3.4:37772465-37772484	None:intergenic	30.0%
ATTCCTTAACCAATACTCTT+AGG	+	chr3.4:37772550-37772569	None:intergenic	30.0%
ATTGTAGCTTGATCAAAGAT+GGG	+	chr3.4:37773131-37773150	None:intergenic	30.0%
CAAATAATGGTTGTTCTATC+TGG	-	chr3.4:37771569-37771588	MS.gene019084:CDS	30.0%
CGAAATCTTGTTAAAGTTGT+TGG	-	chr3.4:37773451-37773470	MS.gene019084:CDS	30.0%
CTAATACATTACTTATGCAG+AGG	-	chr3.4:37771976-37771995	MS.gene019084:intron	30.0%
CTATGTGTCAATGTTTAGAT+GGG	-	chr3.4:37771308-37771327	MS.gene019084:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	37770863	37774130	37770863	ID=MS.gene019084
chr3.4	mRNA	37770863	37774130	37770863	ID=MS.gene019084.t1;Parent=MS.gene019084
chr3.4	exon	37773326	37774130	37773326	ID=MS.gene019084.t1.exon1;Parent=MS.gene019084.t1
chr3.4	CDS	37773326	37774130	37773326	ID=cds.MS.gene019084.t1;Parent=MS.gene019084.t1
chr3.4	exon	37772816	37772929	37772816	ID=MS.gene019084.t1.exon2;Parent=MS.gene019084.t1
chr3.4	CDS	37772816	37772929	37772816	ID=cds.MS.gene019084.t1;Parent=MS.gene019084.t1
chr3.4	exon	37771773	37771930	37771773	ID=MS.gene019084.t1.exon3;Parent=MS.gene019084.t1
chr3.4	CDS	37771773	37771930	37771773	ID=cds.MS.gene019084.t1;Parent=MS.gene019084.t1
chr3.4	exon	37771443	37771653	37771443	ID=MS.gene019084.t1.exon4;Parent=MS.gene019084.t1
chr3.4	CDS	37771443	37771653	37771443	ID=cds.MS.gene019084.t1;Parent=MS.gene019084.t1
chr3.4	exon	37771091	37771328	37771091	ID=MS.gene019084.t1.exon5;Parent=MS.gene019084.t1
chr3.4	CDS	37771091	37771328	37771091	ID=cds.MS.gene019084.t1;Parent=MS.gene019084.t1
chr3.4	exon	37770863	37771013	37770863	ID=MS.gene019084.t1.exon6;Parent=MS.gene019084.t1
chr3.4	CDS	37770863	37771013	37770863	ID=cds.MS.gene019084.t1;Parent=MS.gene019084.t1

Gene Sequence

>MS.gene019084

ATGAAGACTGGATGGGACAAAAAAAGGGGTCTTGAGAGGCGTTTAACTGCATGGAAAAATTGGGATGATCCATCTTTAGGTGAGCTTTCTTCAGCTATGGTATTAACTCCAAACCCTGAAAGCTTTATGTGGAAAGGCTCAACAAAACTCTATAGGACAGCACCATGGACCGGTCCTCGATCTAGTGGAATAATTGGATTCAAAGAAAATCCACTTTTTAATTTTGAGTTTGTCAACAATGAAGACGAGGTATATTATATGTTCACACTCAAGAATAGTTCTGTGGTTTCGATAATTGTTTTTAACGAAACAGTTTCCCTTCGTCAACGCCTCATTTGGATTCCAGAATCCAAAATATGGAAGATTTACCAAATCTTACCACAAGATAGTTGTGATGCATACAATGTCTGTGGGGAAAATGGACAGTGTGTGCTTGATGCATCACCTATGTGTCAATGTTTAGATGGGTTTAAGGCGAAATCGCCACAACAGTGGAATGCAATGGACTGGACAGGTGGATGTGTGCGTAATGGTAATTGGAGTTGTGGGGACAAAAAGAGAGATGGGTTTAAAAGAATTGTTGGGATGAAAATGCCAGATACTACACATTCTTGGATTGATGAGAAAATGACACTTGAAGATTGCAAGGCTAGATGTTTGCAAAATTGTTCTTGCACTGCTTACTCAAGTTTAGACTCAACTGGAACAAATAATGGTTGTTCTATCTGGTTTGGTGATCTTCTTGATCTGAGAGTTTCACCAAGTGGAAAAGATTTATATGTTCGAATGGACGCTTCATATATTGGTACGTAAAGGCTTTCATAGTTTTTTTTTTTTTTTTAACAATGATATGTGTACACCTGATAGTAGCTAACACTCATATAACAACATTCTCTTTTCAACATTTTTTCCAACATTCACTCTTTTATATAGTGAAATTTATGTGAGTCTCATCACTTTATGTAAGACCCATTTCTAATGCACAGGGCATATATGAAGTTCATCTGAGAAGAAAGTGAGTGTTCGAGAAAATTGGAAAGAGAGTGTTGGTAACACTACTCTAAATGTATACACTCCACACGATGCGCACTATACATTTTTCTTTTGTTAATACTAATACATTACTTATGCAGAGGATCATTGATTTTGTTTGGAAATCACATCACATGTGCTTTGTTTCTCTCTTGACCCATAATCGCAGGTGATAAAAATGGGCATACCAAAACAGTAGTATTGTCGGTTTCAATTACAATTTCAGTAGTCCTTGTGATGTTGGCATTCACCTACATTTATATAACAAAGGCAAAGTATAAAGGTAAGTTTCTTAGCCATACGAACTTTTATATTTCTCAAGATTATGAAACTAATGAATTGGACACATTAAATATATCTCACAGACACGGTGTATAATTGAAAAGAGTGCGAAAATACTGAGTACTGCTATCTGAAATTAATTTTGCTCTCATGACTTTAAGTGAAATCTATTTTTAAAATGTAGTTTCGATATTAATTCCATGCATTAAGTGAATAATTGAGAGTGTTCATAACATTTATCATAGTTAAATATTCAATGCAATTTTATTAGAATAAAAGGTGAATCCTATTGTCTTATTGATGGAGATTAGTCGCTTAACTAACATGTAAACTCCATATAATGATAATAAGGGTCTTGCTAATTACATGTCCTAAGAGTATTGGTTAAGGAATCCAGTAATAGAAATTTTGCCTCGGAAACATGAACTTTTACTTGTGTCTTGGCAATAATCATATCGCTTTTTGATGCAAACTTACTAATTTTAATACCTTAATCAATGCCTCAAGGGCACTCATTAGCATTCGACTAAAATAGTAATAATACATTATATATCAAAATGACGTTTTGTTTTAAATTATATATTTTTTCTTCAAAAATTATATTAGTTAAAAAAAATATAGACGTAATGTTGTTTCATGTGCTAACTTTTCAATCAAGTTACATTTTGTTTTAACAGGAAATGATAAATGAACAACCCTTTTGGTTGTTCACACCGTATTTTGCTACGGTTAGGTAATATAAGTTGAATTTTTTAAACATTTTGTTTTACCTTGGAATGCGTGCCAGCTTGAATTGTGCCTTCAGGGTTATACGGTGTGGAATAAGTTGTAGGTTTTGGGTTGCTAAAATAACACTCCTCTTGTTTTAAATGGCATTGATTAAAAGAGAAAATAGAGAAGATCACAAGGTCAGAAGAGAATGATGAAGAAACACATGAAGATTTTGAGCTTCCCATCTTTGATCAAGCTACAATACGCAAGGCAACAAATAACTTCTCTTATGACAACAAGCTTGGGGAAGGCGGTTTTGGACCAGTATACAAGGTAAATTTATGCCATGTTTTTATTGTGTGAATAACTTACAAAATTTCTAGTAGTATGGATAAAATAGAAACAGTGAAATTCATTATTTATAAAAAAATTCAATTATAAATAATATATAGGGTACATTGCTCGATGGACAAGAAATTGCTGTCAAAAGGCTTTCAAGGAGTTCTGGACAAGGACAAAAGGAGTTTAAAAATGAAGTTATATTATGTGCTAAACTTCAACACCGAAATCTTGTTAAAGTTGTTGGTTGTTGTATCGAAGGAGATGAGAAAATGTTGATCTATGAATACATGCTCAATAAAAGTCTCGATTCATTTCTTTTTGGTTAGTATTTTTTTTTTTTTTTGCGAAGTGTAATATTTGATCTAACATAAACTTAGTAAAATTTTTTGTTGTTGCAAAGAAATGATTAATGAACTTATTGAACACTTTTTTCAGATACATTTTCGAGTAAATTGTTAGATTGGTCTACACGCTTTAACATTTTATTTGGAATTGCTCGGGGTCTTCTTTATCTTCATCAAGATTCAAGATTAAGGATCATACACAGAGATCTAAAAGTCAGTAATATTTTATTAGACAGTGATATGAACCCAAAAATTTCAGATTTTGGCTTAGCTAGAATGTGTGGAGGTGATCAAATCGAGGGGAGAACAAACAGAATAGTTGGCACATAGTAAGTATCTTAAAACATAATAACTTATTTGTATAAATAATTAAACATCTGAAAATTTATTGGTTGTTTCCTTGCAGCGGTTATATGGCACCAGAATATGCCACTGATGGATTATTTTCTATAAAATCAGATGTATTTAGCTTTGGCGTATTGTTGTTAGAAATTATTAGTGGAAAGAAAAACAGGGCACTTAGCTATCAAGAAAACGATCATAATCTTATTGGATAT

Protein sequence

>MS.gene019084.t1

MKTGWDKKRGLERRLTAWKNWDDPSLGELSSAMVLTPNPESFMWKGSTKLYRTAPWTGPRSSGIIGFKENPLFNFEFVNNEDEVYYMFTLKNSSVVSIIVFNETVSLRQRLIWIPESKIWKIYQILPQDSCDAYNVCGENGQCVLDASPMCQCLDGFKAKSPQQWNAMDWTGGCVRNGNWSCGDKKRDGFKRIVGMKMPDTTHSWIDEKMTLEDCKARCLQNCSCTAYSSLDSTGTNNGCSIWFGDLLDLRVSPSGKDLYVRMDASYIGDKNGHTKTVVLSVSITISVVLVMLAFTYIYITKAKYKEKIEKITRSEENDEETHEDFELPIFDQATIRKATNNFSYDNKLGEGGFGPVYKGTLLDGQEIAVKRLSRSSGQGQKEFKNEVILCAKLQHRNLVKVVGCCIEGDEKMLIYEYMLNKSLDSFLFDTFSSKLLDWSTRFNILFGIARGLLYLHQDSRLRIIHRDLKVSNILLDSDMNPKISDFGLARMCGGDQIEGRTNRIVGTYGYMAPEYATDGLFSIKSDVFSFGVLLLEIISGKKNRALSYQENDHNLIGY