Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019128.t1 | XP_013459310.1 | 99.3 | 298 | 2 | 0 | 3 | 300 | 26 | 323 | 7.50E-149 | 536.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019128.t1 | O48946 | 51.8 | 166 | 74 | 4 | 3 | 167 | 28 | 188 | 9.6e-36 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019128.t1 | A0A072UVE3 | 99.3 | 298 | 2 | 0 | 3 | 300 | 26 | 323 | 5.4e-149 | 536.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene019128.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019128.t1 | MTR_3g436010 | 99.329 | 298 | 2 | 0 | 3 | 300 | 26 | 323 | 0.0 | 613 |
| MS.gene019128.t1 | MTR_3g436010 | 98.684 | 228 | 3 | 0 | 3 | 230 | 26 | 253 | 4.81e-171 | 474 |
| MS.gene019128.t1 | MTR_3g107520 | 60.843 | 166 | 60 | 3 | 4 | 167 | 30 | 192 | 3.22e-48 | 172 |
| MS.gene019128.t1 | MTR_3g030040 | 31.579 | 228 | 125 | 5 | 4 | 218 | 11 | 220 | 1.43e-29 | 119 |
| MS.gene019128.t1 | MTR_1g098550 | 55.422 | 83 | 37 | 0 | 9 | 91 | 38 | 120 | 1.74e-27 | 112 |
| MS.gene019128.t1 | MTR_1g098550 | 55.422 | 83 | 37 | 0 | 9 | 91 | 34 | 116 | 1.82e-27 | 112 |
| MS.gene019128.t1 | MTR_8g037260 | 33.071 | 254 | 130 | 12 | 4 | 222 | 11 | 259 | 2.50e-27 | 112 |
| MS.gene019128.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 7.00e-27 | 110 |
| MS.gene019128.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 7.71e-27 | 110 |
| MS.gene019128.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 2.78e-25 | 106 |
| MS.gene019128.t1 | MTR_4g130510 | 63.380 | 71 | 26 | 0 | 2 | 72 | 25 | 95 | 6.41e-25 | 105 |
| MS.gene019128.t1 | MTR_8g092590 | 35.196 | 179 | 96 | 5 | 4 | 167 | 29 | 202 | 4.10e-24 | 102 |
| MS.gene019128.t1 | MTR_8g063270 | 59.155 | 71 | 29 | 0 | 2 | 72 | 25 | 95 | 7.21e-24 | 102 |
| MS.gene019128.t1 | MTR_7g057160 | 50.000 | 132 | 60 | 1 | 170 | 295 | 40 | 171 | 9.57e-24 | 95.5 |
| MS.gene019128.t1 | MTR_2g035780 | 50.000 | 84 | 41 | 1 | 5 | 87 | 28 | 111 | 1.01e-23 | 101 |
| MS.gene019128.t1 | MTR_7g106680 | 30.396 | 227 | 112 | 7 | 2 | 228 | 8 | 188 | 1.95e-21 | 95.1 |
| MS.gene019128.t1 | MTR_3g007770 | 53.731 | 67 | 31 | 0 | 6 | 72 | 31 | 97 | 1.02e-19 | 89.7 |
| MS.gene019128.t1 | MTR_8g086600 | 38.710 | 62 | 38 | 0 | 11 | 72 | 6 | 67 | 9.92e-12 | 65.9 |
| MS.gene019128.t1 | MTR_2g016630 | 43.548 | 62 | 32 | 1 | 14 | 72 | 9 | 70 | 7.48e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019128.t1 | AT5G11260 | 72.519 | 131 | 35 | 1 | 168 | 297 | 33 | 163 | 6.98e-56 | 178 |
| MS.gene019128.t1 | AT5G11260 | 72.174 | 115 | 31 | 1 | 168 | 281 | 33 | 147 | 2.50e-50 | 164 |
| MS.gene019128.t1 | AT4G32410 | 59.639 | 166 | 61 | 4 | 3 | 167 | 28 | 188 | 9.18e-49 | 174 |
| MS.gene019128.t1 | AT2G25540 | 59.091 | 132 | 50 | 2 | 4 | 134 | 23 | 151 | 1.13e-44 | 162 |
| MS.gene019128.t1 | AT3G17609 | 55.372 | 121 | 47 | 3 | 170 | 285 | 23 | 141 | 2.85e-33 | 119 |
| MS.gene019128.t1 | AT3G17609 | 54.867 | 113 | 44 | 3 | 178 | 285 | 2 | 112 | 1.60e-30 | 111 |
| MS.gene019128.t1 | AT3G17609 | 63.750 | 80 | 29 | 0 | 206 | 285 | 48 | 127 | 1.31e-28 | 107 |
| MS.gene019128.t1 | AT3G17609 | 63.750 | 80 | 29 | 0 | 206 | 285 | 47 | 126 | 1.33e-28 | 107 |
| MS.gene019128.t1 | AT5G05170 | 39.326 | 178 | 88 | 6 | 4 | 164 | 10 | 184 | 9.93e-28 | 113 |
| MS.gene019128.t1 | AT5G17420 | 60.563 | 71 | 28 | 0 | 2 | 72 | 25 | 95 | 1.04e-26 | 110 |
| MS.gene019128.t1 | AT5G09870 | 40.123 | 162 | 88 | 5 | 4 | 164 | 29 | 182 | 6.40e-24 | 102 |
| MS.gene019128.t1 | AT4G39350 | 56.522 | 69 | 30 | 0 | 4 | 72 | 29 | 97 | 8.02e-23 | 99.0 |
| MS.gene019128.t1 | AT5G64740 | 57.971 | 69 | 29 | 0 | 4 | 72 | 29 | 97 | 3.48e-22 | 97.4 |
| MS.gene019128.t1 | AT5G44030 | 42.529 | 87 | 48 | 1 | 8 | 92 | 17 | 103 | 5.60e-20 | 90.9 |
| MS.gene019128.t1 | AT5G44030 | 42.529 | 87 | 48 | 1 | 8 | 92 | 17 | 103 | 8.32e-20 | 90.1 |
| MS.gene019128.t1 | AT2G21770 | 54.545 | 66 | 30 | 0 | 7 | 72 | 32 | 97 | 1.50e-19 | 89.4 |
| MS.gene019128.t1 | AT4G18780 | 33.333 | 111 | 64 | 2 | 13 | 122 | 8 | 109 | 2.36e-13 | 70.9 |
Find 75 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCATTCAAATTCTTTA+AGG | 0.156035 | 3.3:-35761286 | None:intergenic |
| TGCTGGTCCTGAACGTGTTC+AGG | 0.203346 | 3.3:+35763173 | MS.gene019128:CDS |
| AAGATGATGTCGACGATTTA+AGG | 0.228388 | 3.3:+35761590 | MS.gene019128:CDS |
| TAGCCGTTTGCTTTCTTTGT+CGG | 0.302350 | 3.3:-35763235 | None:intergenic |
| AACTCTGTACCTGGTTGCTT+TGG | 0.303795 | 3.3:-35762378 | None:intergenic |
| CTAATTTCATTCAGCATTGT+TGG | 0.308963 | 3.3:-35764139 | None:intergenic |
| GCTGACCTCTCTTCATCTTC+TGG | 0.318002 | 3.3:+35761673 | MS.gene019128:CDS |
| GCAAGCAAGGGAGAGGAAAA+AGG | 0.332419 | 3.3:+35763409 | MS.gene019128:CDS |
| GCAGATTCACCTCCCATATC+TGG | 0.342040 | 3.3:-35763114 | None:intergenic |
| GCAAACTACATCAGGTCCTT+TGG | 0.365962 | 3.3:+35762317 | MS.gene019128:CDS |
| TTTACGAGAGGCTGATGTTC+CGG | 0.366238 | 3.3:-35763136 | None:intergenic |
| TGACCATTCAAATTCTTTAA+GGG | 0.374526 | 3.3:-35761285 | None:intergenic |
| GATCAGAAGAGTGCCAGATA+TGG | 0.377906 | 3.3:+35763101 | MS.gene019128:CDS |
| CGTTTGCTTTCTTTGTCGGC+TGG | 0.382290 | 3.3:-35763231 | None:intergenic |
| TCTTGCATTGTGGACATGAT+TGG | 0.409151 | 3.3:-35761431 | None:intergenic |
| TTAAGGAATGAGGTCAAGTA+TGG | 0.424236 | 3.3:+35761607 | MS.gene019128:CDS |
| GCTGGTCCTGAACGTGTTCA+GGG | 0.433822 | 3.3:+35763174 | MS.gene019128:CDS |
| CAAACTACATCAGGTCCTTT+GGG | 0.435196 | 3.3:+35762318 | MS.gene019128:CDS |
| CCATCTCACAAATGGACAAC+TGG | 0.446482 | 3.3:+35761720 | MS.gene019128:CDS |
| CAAAATCCCCATCTCACAAA+TGG | 0.448984 | 3.3:+35761712 | MS.gene019128:CDS |
| CAGTTGTCCATTTGTGAGAT+GGG | 0.452668 | 3.3:-35761719 | None:intergenic |
| AAACCCTTAAAGAATTTGAA+TGG | 0.465051 | 3.3:+35761282 | MS.gene019128:CDS |
| CCAGTTGTCCATTTGTGAGA+TGG | 0.468711 | 3.3:-35761720 | None:intergenic |
| GTTTGCTTTCTTTGTCGGCT+GGG | 0.469429 | 3.3:-35763230 | None:intergenic |
| CAATCTGTGCAAACTACATC+AGG | 0.479607 | 3.3:+35762309 | MS.gene019128:CDS |
| ATCAGAAGAGTGCCAGATAT+GGG | 0.480465 | 3.3:+35763102 | MS.gene019128:CDS |
| AAAGGCACTGGTTCAACTGC+TGG | 0.500784 | 3.3:+35763156 | MS.gene019128:CDS |
| GAGTTTCAGCTCAGCAAGCA+AGG | 0.505240 | 3.3:+35763396 | MS.gene019128:CDS |
| TGCTAAGGCAGGATGGCAAT+GGG | 0.509509 | 3.3:+35761642 | MS.gene019128:CDS |
| ATTCTTGTTATGAATACGAA+TGG | 0.515816 | 3.3:+35761397 | MS.gene019128:CDS |
| CAGCCGACAAAGAAAGCAAA+CGG | 0.518077 | 3.3:+35763232 | MS.gene019128:CDS |
| AAGAAAGCAAACGGCTAAAG+AGG | 0.525143 | 3.3:+35763241 | MS.gene019128:CDS |
| ATGCTAAGGCAGGATGGCAA+TGG | 0.525935 | 3.3:+35761641 | MS.gene019128:CDS |
| CAAATATGTGGTGATACTGT+TGG | 0.528030 | 3.3:+35761315 | MS.gene019128:CDS |
| CAGCTCAGCAAGCAAGGGAG+AGG | 0.533112 | 3.3:+35763402 | MS.gene019128:CDS |
| TCAGATGATCCTCGAGTGAA+AGG | 0.541668 | 3.3:+35761556 | MS.gene019128:intron |
| CTGGTCCTGAACGTGTTCAG+GGG | 0.549744 | 3.3:+35763175 | MS.gene019128:CDS |
| CAAGGAAATAATGCTAAGGC+AGG | 0.555264 | 3.3:+35761631 | MS.gene019128:CDS |
| AACACAACAGCTAGCAGGAG+AGG | 0.559475 | 3.3:+35764102 | MS.gene019128:CDS |
| TGGTTGCTTTGGATCAACAT+AGG | 0.561478 | 3.3:-35762367 | None:intergenic |
| AAAGGCATACTTGAGTGACT+TGG | 0.562983 | 3.3:+35763427 | MS.gene019128:CDS |
| TCAGCCTCTCGTAAAGGCAC+TGG | 0.570711 | 3.3:+35763144 | MS.gene019128:CDS |
| TGAAGAACACAACAGCTAGC+AGG | 0.571660 | 3.3:+35764097 | MS.gene019128:CDS |
| GGAACATCAGCCTCTCGTAA+AGG | 0.572244 | 3.3:+35763138 | MS.gene019128:CDS |
| GAGAGGGTCAAAAGAAGAGA+GGG | 0.574495 | 3.3:+35763202 | MS.gene019128:CDS |
| AGCAGGAGAGGAAGCAATGG+TGG | 0.577077 | 3.3:+35764114 | MS.gene019128:CDS |
| GAAATAATGCTAAGGCAGGA+TGG | 0.579382 | 3.3:+35761635 | MS.gene019128:CDS |
| GCTAGCAGGAGAGGAAGCAA+TGG | 0.581690 | 3.3:+35764111 | MS.gene019128:CDS |
| TCATCACCTCCTTTCACTCG+AGG | 0.584150 | 3.3:-35761565 | None:intergenic |
| AGTTGTCCATTTGTGAGATG+GGG | 0.584444 | 3.3:-35761718 | None:intergenic |
| AATGAGGTCAAGTATGGTCA+AGG | 0.586685 | 3.3:+35761613 | MS.gene019128:CDS |
| ACTGTTGGATTAACAGCCAC+CGG | 0.592728 | 3.3:+35761330 | MS.gene019128:CDS |
| AGTTTCAGCTCAGCAAGCAA+GGG | 0.593359 | 3.3:+35763397 | MS.gene019128:CDS |
| TGGTCAAGGAAATAATGCTA+AGG | 0.601648 | 3.3:+35761627 | MS.gene019128:CDS |
| GGTCAAATCTGTCAAATATG+TGG | 0.604762 | 3.3:+35761303 | MS.gene019128:CDS |
| TTGAATCTAGTCTTGCATTG+TGG | 0.607208 | 3.3:-35761441 | None:intergenic |
| CATAACAAGAATAACAAAGT+GGG | 0.607961 | 3.3:-35761386 | None:intergenic |
| TGTCGACGATTTAAGGAATG+AGG | 0.608917 | 3.3:+35761597 | MS.gene019128:CDS |
| GGAGAGGGTCAAAAGAAGAG+AGG | 0.610866 | 3.3:+35763201 | MS.gene019128:CDS |
| GCAAGCAACAAAGACTTCGC+CGG | 0.615968 | 3.3:-35761349 | None:intergenic |
| TGGTCCTGAACGTGTTCAGG+GGG | 0.619644 | 3.3:+35763176 | MS.gene019128:CDS |
| TATGTTGATCCAAAGCAACC+AGG | 0.626073 | 3.3:+35762369 | MS.gene019128:CDS |
| AGCAACAAAGACTTCGCCGG+TGG | 0.627106 | 3.3:-35761346 | None:intergenic |
| TGAACCAGTGCCTTTACGAG+AGG | 0.628738 | 3.3:-35763148 | None:intergenic |
| TCATAACAAGAATAACAAAG+TGG | 0.629424 | 3.3:-35761387 | None:intergenic |
| ACTAGATTCAAAAGTCACAA+AGG | 0.638228 | 3.3:+35761453 | MS.gene019128:CDS |
| GATATGGGAGGTGAATCTGC+CGG | 0.641842 | 3.3:+35763117 | MS.gene019128:CDS |
| CATGTCCAGAAGATGAAGAG+AGG | 0.650710 | 3.3:-35761678 | None:intergenic |
| AAAATGGTAATAGGCTACTG+AGG | 0.657428 | 3.3:+35763369 | MS.gene019128:intron |
| GATGATCCTCGAGTGAAAGG+AGG | 0.657821 | 3.3:+35761559 | MS.gene019128:intron |
| ACAAGAATAACAAAGTGGGA+AGG | 0.660604 | 3.3:-35761382 | None:intergenic |
| TGAGTATCAGAAGTAGCACA+TGG | 0.676546 | 3.3:-35762288 | None:intergenic |
| AGAAGAGTGCCAGATATGGG+AGG | 0.694389 | 3.3:+35763105 | MS.gene019128:CDS |
| AAAGTGGGAAGGAACACTCG+TGG | 0.715900 | 3.3:-35761371 | None:intergenic |
| TCCAGGTCTTGAGAGTGACG+AGG | 0.727846 | 3.3:+35763077 | MS.gene019128:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAAAGGAATTCTAT+CGG | - | chr3.3:35762809-35762828 | None:intergenic | 15.0% |
| !! | GTTTAAGAAAGTAAAATTTA+TGG | + | chr3.3:35762051-35762070 | MS.gene019128:intron | 15.0% |
| !! | TACATAGAAATTTATATACA+TGG | + | chr3.3:35763817-35763836 | MS.gene019128:intron | 15.0% |
| !! | TCTATGTAAATTAATATTGA+TGG | - | chr3.3:35763805-35763824 | None:intergenic | 15.0% |
| !! | TTAACTTATATATTCACAAT+TGG | + | chr3.3:35761811-35761830 | MS.gene019128:intron | 15.0% |
| !!! | ATACTAATTGTATCTTTTTA+TGG | + | chr3.3:35762246-35762265 | MS.gene019128:intron | 15.0% |
| !!! | ATTAAATGTGAGATAATTTT+TGG | + | chr3.3:35762204-35762223 | MS.gene019128:intron | 15.0% |
| !!! | TGATTTGAACTTTTTAAAAT+CGG | + | chr3.3:35761984-35762003 | MS.gene019128:intron | 15.0% |
| !! | AAAGTTTATGCATATTGAAA+AGG | - | chr3.3:35762498-35762517 | None:intergenic | 20.0% |
| !! | AATAAAATGGTAATCTTGAT+TGG | + | chr3.3:35763008-35763027 | MS.gene019128:intron | 20.0% |
| !! | AATTCACAAATGAGAAATTT+CGG | - | chr3.3:35763982-35764001 | None:intergenic | 20.0% |
| !! | ATAGAAGTAAAAGTCTTTAT+AGG | + | chr3.3:35762552-35762571 | MS.gene019128:intron | 20.0% |
| !! | CATCACATGAATAAATAAAA+TGG | + | chr3.3:35762995-35763014 | MS.gene019128:intron | 20.0% |
| !! | GAAATTTATATACATGGTTA+AGG | + | chr3.3:35763823-35763842 | MS.gene019128:intron | 20.0% |
| !! | TCACTTAAATTGTATATGAT+TGG | + | chr3.3:35764060-35764079 | MS.gene019128:intron | 20.0% |
| !! | TCTTAATTTAGACAATGAAA+AGG | - | chr3.3:35762618-35762637 | None:intergenic | 20.0% |
| !! | TGAACTAGAATATTCAAATT+TGG | - | chr3.3:35764006-35764025 | None:intergenic | 20.0% |
| !!! | ACATTTTTTTGTTTGTTGAA+AGG | + | chr3.3:35764025-35764044 | MS.gene019128:intron | 20.0% |
| !!! | TAATCATGATGTAAAAGTTT+TGG | - | chr3.3:35763691-35763710 | None:intergenic | 20.0% |
| !!! | TTGTAATTTGTTTGTTACAT+TGG | + | chr3.3:35763337-35763356 | MS.gene019128:intron | 20.0% |
| ! | AAACCCTTAAAGAATTTGAA+TGG | + | chr3.3:35761282-35761301 | MS.gene019128:CDS | 25.0% |
| ! | AAAGAACAATAACATCATGA+TGG | - | chr3.3:35763624-35763643 | None:intergenic | 25.0% |
| ! | AACATTAAAAGTGAAGAAGT+AGG | - | chr3.3:35761862-35761881 | None:intergenic | 25.0% |
| ! | AAGAACAATAACATCATGAT+GGG | - | chr3.3:35763623-35763642 | None:intergenic | 25.0% |
| ! | AGGAATATAGAGAATAATCA+CGG | + | chr3.3:35763758-35763777 | MS.gene019128:intron | 25.0% |
| ! | AGTAAAATATCAGAGTGATA+AGG | - | chr3.3:35763924-35763943 | None:intergenic | 25.0% |
| ! | ATTCACAAATGAGAAATTTC+GGG | - | chr3.3:35763981-35764000 | None:intergenic | 25.0% |
| ! | CATAACAAGAATAACAAAGT+GGG | - | chr3.3:35761389-35761408 | None:intergenic | 25.0% |
| ! | GTTCAAAAGTTTACTAAAAC+TGG | - | chr3.3:35762642-35762661 | None:intergenic | 25.0% |
| ! | TCATAACAAGAATAACAAAG+TGG | - | chr3.3:35761390-35761409 | None:intergenic | 25.0% |
| ! | TGACCATTCAAATTCTTTAA+GGG | - | chr3.3:35761288-35761307 | None:intergenic | 25.0% |
| ! | TGATGTTATTGTTCTTTAGA+TGG | + | chr3.3:35763627-35763646 | MS.gene019128:intron | 25.0% |
| ! | TTGACCATTCAAATTCTTTA+AGG | - | chr3.3:35761289-35761308 | None:intergenic | 25.0% |
| !! | AATTTTCAGACTCTTGAATT+CGG | + | chr3.3:35761758-35761777 | MS.gene019128:intron | 25.0% |
| !! | ATAAGTTAACACATTTTTGC+AGG | - | chr3.3:35761800-35761819 | None:intergenic | 25.0% |
| !! | ATGTTTTCTTATGTTGAGAA+TGG | + | chr3.3:35763880-35763899 | MS.gene019128:intron | 25.0% |
| !! | ATTCTTGTTATGAATACGAA+TGG | + | chr3.3:35761397-35761416 | MS.gene019128:CDS | 25.0% |
| !! | TTCCATTTTCTCATTATTAC+CGG | + | chr3.3:35762925-35762944 | MS.gene019128:intron | 25.0% |
| !!! | ATAAAATACTAGCATTGACA+CGG | - | chr3.3:35762966-35762985 | None:intergenic | 25.0% |
| !!! | TAATTTGTTTGTTACATTGG+TGG | + | chr3.3:35763340-35763359 | MS.gene019128:intron | 25.0% |
| !!! | TCTAGAATATTGCTTTAGAA+AGG | + | chr3.3:35763738-35763757 | MS.gene019128:intron | 25.0% |
| !!! | TTCTATTGTGAGTATTTTGA+AGG | - | chr3.3:35762538-35762557 | None:intergenic | 25.0% |
| AAAATATCAGAGTGATAAGG+AGG | - | chr3.3:35763921-35763940 | None:intergenic | 30.0% | |
| AAATGCTATGAATCAATCAC+AGG | - | chr3.3:35763316-35763335 | None:intergenic | 30.0% | |
| ACTAGATTCAAAAGTCACAA+AGG | + | chr3.3:35761453-35761472 | MS.gene019128:CDS | 30.0% | |
| AGAACAATAACATCATGATG+GGG | - | chr3.3:35763622-35763641 | None:intergenic | 30.0% | |
| ATGAATCAATCACAGGAAAA+AGG | - | chr3.3:35763309-35763328 | None:intergenic | 30.0% | |
| CAAACCCAAGTAAATTATCT+AGG | - | chr3.3:35763034-35763053 | None:intergenic | 30.0% | |
| GACACAGAAAAACAAAATTG+TGG | - | chr3.3:35762580-35762599 | None:intergenic | 30.0% | |
| TAATCACGGAATCTTATCAA+TGG | + | chr3.3:35763772-35763791 | MS.gene019128:intron | 30.0% | |
| TTCACAAATGAGAAATTTCG+GGG | - | chr3.3:35763980-35763999 | None:intergenic | 30.0% | |
| TTGGCCTAGATAATTTACTT+GGG | + | chr3.3:35763027-35763046 | MS.gene019128:intron | 30.0% | |
| TTGTTGAAAGGACATATTCT+AGG | + | chr3.3:35764037-35764056 | MS.gene019128:intron | 30.0% | |
| ! | ACTTTTGAACAAACACTTGT+AGG | + | chr3.3:35762652-35762671 | MS.gene019128:intron | 30.0% |
| ! | ATTGGCCTAGATAATTTACT+TGG | + | chr3.3:35763026-35763045 | MS.gene019128:intron | 30.0% |
| ! | ATTTTGAGCTAAGATGTAGA+CGG | + | chr3.3:35762120-35762139 | MS.gene019128:intron | 30.0% |
| ! | TCTTTTTATGGTTAGATGTC+TGG | + | chr3.3:35762258-35762277 | MS.gene019128:intron | 30.0% |
| ! | TGCTACACTACAATCATTTT+AGG | - | chr3.3:35762406-35762425 | None:intergenic | 30.0% |
| !! | TAAAGGCATTGTGATGTAAT+TGG | - | chr3.3:35763561-35763580 | None:intergenic | 30.0% |
| AAAATGGTAATAGGCTACTG+AGG | + | chr3.3:35763369-35763388 | MS.gene019128:intron | 35.0% | |
| AAGATGATGTCGACGATTTA+AGG | + | chr3.3:35761590-35761609 | MS.gene019128:CDS | 35.0% | |
| AATTTCGGGGGATATAATGA+TGG | - | chr3.3:35763967-35763986 | None:intergenic | 35.0% | |
| ACAAGAATAACAAAGTGGGA+AGG | - | chr3.3:35761385-35761404 | None:intergenic | 35.0% | |
| ATCCACATTCATCTTGTTCA+TGG | - | chr3.3:35761535-35761554 | None:intergenic | 35.0% | |
| CAAATATGTGGTGATACTGT+TGG | + | chr3.3:35761315-35761334 | MS.gene019128:CDS | 35.0% | |
| CAACAGGAGGGATAAATTAA+AGG | - | chr3.3:35762820-35762839 | None:intergenic | 35.0% | |
| CACCGGTAATAATGAGAAAA+TGG | - | chr3.3:35762930-35762949 | None:intergenic | 35.0% | |
| GAAAAAGGAGTTAGAGTTCA+TGG | - | chr3.3:35763294-35763313 | None:intergenic | 35.0% | |
| GGTCAAATCTGTCAAATATG+TGG | + | chr3.3:35761303-35761322 | MS.gene019128:CDS | 35.0% | |
| GTGTAGCATATCACATTTCA+TGG | + | chr3.3:35762418-35762437 | MS.gene019128:intron | 35.0% | |
| TCACAAATGAGAAATTTCGG+GGG | - | chr3.3:35763979-35763998 | None:intergenic | 35.0% | |
| TGGCGTGTAAAAATGGTAAT+AGG | + | chr3.3:35763360-35763379 | MS.gene019128:intron | 35.0% | |
| TGGTCAAGGAAATAATGCTA+AGG | + | chr3.3:35761627-35761646 | MS.gene019128:CDS | 35.0% | |
| TTAAGGAATGAGGTCAAGTA+TGG | + | chr3.3:35761607-35761626 | MS.gene019128:CDS | 35.0% | |
| TTTACTTGGGTTTGAACTCT+TGG | + | chr3.3:35763040-35763059 | MS.gene019128:intron | 35.0% | |
| ! | ACACAATGATGACGAGATAA+AGG | - | chr3.3:35763578-35763597 | None:intergenic | 35.0% |
| ! | CTGAAGTGTTAGTATCACAT+GGG | - | chr3.3:35762854-35762873 | None:intergenic | 35.0% |
| ! | TCTGAAGTGTTAGTATCACA+TGG | - | chr3.3:35762855-35762874 | None:intergenic | 35.0% |
| ! | TTTTGAGCTAAGATGTAGAC+GGG | + | chr3.3:35762121-35762140 | MS.gene019128:intron | 35.0% |
| !! | GTATTTTGAAGGAACTGGAA+AGG | - | chr3.3:35762527-35762546 | None:intergenic | 35.0% |
| !! | TGTGAGTATTTTGAAGGAAC+TGG | - | chr3.3:35762532-35762551 | None:intergenic | 35.0% |
| !! | TTGAATCTAGTCTTGCATTG+TGG | - | chr3.3:35761444-35761463 | None:intergenic | 35.0% |
| AAGAAAGCAAACGGCTAAAG+AGG | + | chr3.3:35763241-35763260 | MS.gene019128:CDS | 40.0% | |
| AAGAGGATTACTGGTGCTTA+TGG | - | chr3.3:35762784-35762803 | None:intergenic | 40.0% | |
| AAGGAATTCTATCGGTCAAG+AGG | - | chr3.3:35762801-35762820 | None:intergenic | 40.0% | |
| AATGAGGTCAAGTATGGTCA+AGG | + | chr3.3:35761613-35761632 | MS.gene019128:CDS | 40.0% | |
| AGTTGTCCATTTGTGAGATG+GGG | - | chr3.3:35761721-35761740 | None:intergenic | 40.0% | |
| ATTATTACCGGTGTCCTGTT+AGG | + | chr3.3:35762937-35762956 | MS.gene019128:intron | 40.0% | |
| CAAAATCCCCATCTCACAAA+TGG | + | chr3.3:35761712-35761731 | MS.gene019128:CDS | 40.0% | |
| CAAACTACATCAGGTCCTTT+GGG | + | chr3.3:35762318-35762337 | MS.gene019128:CDS | 40.0% | |
| CAAGGAAATAATGCTAAGGC+AGG | + | chr3.3:35761631-35761650 | MS.gene019128:CDS | 40.0% | |
| CAATCTGTGCAAACTACATC+AGG | + | chr3.3:35762309-35762328 | MS.gene019128:CDS | 40.0% | |
| CAGTTGTCCATTTGTGAGAT+GGG | - | chr3.3:35761722-35761741 | None:intergenic | 40.0% | |
| GAAATAATGCTAAGGCAGGA+TGG | + | chr3.3:35761635-35761654 | MS.gene019128:CDS | 40.0% | |
| TAGCCGTTTGCTTTCTTTGT+CGG | - | chr3.3:35763238-35763257 | None:intergenic | 40.0% | |
| TATGTTGATCCAAAGCAACC+AGG | + | chr3.3:35762369-35762388 | MS.gene019128:CDS | 40.0% | |
| TCATGGCAAATTCTGATGAG+AGG | - | chr3.3:35761518-35761537 | None:intergenic | 40.0% | |
| TCTTGCATTGTGGACATGAT+TGG | - | chr3.3:35761434-35761453 | None:intergenic | 40.0% | |
| TGAGTATCAGAAGTAGCACA+TGG | - | chr3.3:35762291-35762310 | None:intergenic | 40.0% | |
| TGCCATGAACAAGATGAATG+TGG | + | chr3.3:35761530-35761549 | MS.gene019128:intron | 40.0% | |
| TGTCGACGATTTAAGGAATG+AGG | + | chr3.3:35761597-35761616 | MS.gene019128:CDS | 40.0% | |
| TTTAGATGGAATGCATGAGC+TGG | + | chr3.3:35763641-35763660 | MS.gene019128:intron | 40.0% | |
| ! | AAAGGCATACTTGAGTGACT+TGG | + | chr3.3:35763427-35763446 | MS.gene019128:CDS | 40.0% |
| ! | ACATTTTCGGATTGACCCAA+AGG | - | chr3.3:35762336-35762355 | None:intergenic | 40.0% |
| ! | CTTCAGATTGAAAGCATGTC+CGG | + | chr3.3:35762868-35762887 | MS.gene019128:intron | 40.0% |
| ! | GGGATATAATGATGGTTTGG+TGG | - | chr3.3:35763959-35763978 | None:intergenic | 40.0% |
| ! | GTTTGAACTCTTGGTGACTT+TGG | + | chr3.3:35763049-35763068 | MS.gene019128:intron | 40.0% |
| ! | TGGTTGCTTTGGATCAACAT+AGG | - | chr3.3:35762370-35762389 | None:intergenic | 40.0% |
| ! | TTTTAGGCTAACTCTGTACC+TGG | - | chr3.3:35762390-35762409 | None:intergenic | 40.0% |
| !! | AAGGTTAGCTTGTGATCACA+TGG | + | chr3.3:35761472-35761491 | MS.gene019128:intron | 40.0% |
| !! | ACATTGGTGGCGTGTAAAAA+TGG | + | chr3.3:35763353-35763372 | MS.gene019128:intron | 40.0% |
| !! | ATAATGATGGTTTGGTGGCA+GGG | - | chr3.3:35763954-35763973 | None:intergenic | 40.0% |
| !! | ATCAGAAGAGTGCCAGATAT+GGG | + | chr3.3:35763102-35763121 | MS.gene019128:CDS | 40.0% |
| !! | TATAATGATGGTTTGGTGGC+AGG | - | chr3.3:35763955-35763974 | None:intergenic | 40.0% |
| AACTCTGTACCTGGTTGCTT+TGG | - | chr3.3:35762381-35762400 | None:intergenic | 45.0% | |
| ACTGTTGGATTAACAGCCAC+CGG | + | chr3.3:35761330-35761349 | MS.gene019128:CDS | 45.0% | |
| AGTTTCAGCTCAGCAAGCAA+GGG | + | chr3.3:35763397-35763416 | MS.gene019128:CDS | 45.0% | |
| ATGGGTGAGTACTACACAAC+AGG | - | chr3.3:35762836-35762855 | None:intergenic | 45.0% | |
| CAGCCGACAAAGAAAGCAAA+CGG | + | chr3.3:35763232-35763251 | MS.gene019128:CDS | 45.0% | |
| CATGTCCAGAAGATGAAGAG+AGG | - | chr3.3:35761681-35761700 | None:intergenic | 45.0% | |
| CCAGTTGTCCATTTGTGAGA+TGG | - | chr3.3:35761723-35761742 | None:intergenic | 45.0% | |
| CCATCTCACAAATGGACAAC+TGG | + | chr3.3:35761720-35761739 | MS.gene019128:CDS | 45.0% | |
| CGGGGGATATAATGATGGTT+TGG | - | chr3.3:35763962-35763981 | None:intergenic | 45.0% | |
| CTATCGGTCAAGAGGATTAC+TGG | - | chr3.3:35762793-35762812 | None:intergenic | 45.0% | |
| GAGAGGGTCAAAAGAAGAGA+GGG | + | chr3.3:35763202-35763221 | MS.gene019128:CDS | 45.0% | |
| GCAAACTACATCAGGTCCTT+TGG | + | chr3.3:35762317-35762336 | MS.gene019128:CDS | 45.0% | |
| GTGAGTACTACACAACAGGA+GGG | - | chr3.3:35762832-35762851 | None:intergenic | 45.0% | |
| TCAGATGATCCTCGAGTGAA+AGG | + | chr3.3:35761556-35761575 | MS.gene019128:intron | 45.0% | |
| TGAAGAACACAACAGCTAGC+AGG | + | chr3.3:35764097-35764116 | MS.gene019128:CDS | 45.0% | |
| TGGTGACTTTGGCATAATCC+AGG | + | chr3.3:35763060-35763079 | MS.gene019128:intron | 45.0% | |
| TTTACGAGAGGCTGATGTTC+CGG | - | chr3.3:35763139-35763158 | None:intergenic | 45.0% | |
| ! | ACATCATGATGGGGATGCTT+TGG | - | chr3.3:35763613-35763632 | None:intergenic | 45.0% |
| ! | GGCACGTGAGTGAACATTTT+CGG | - | chr3.3:35762349-35762368 | None:intergenic | 45.0% |
| ! | GTTTGCTTTCTTTGTCGGCT+GGG | - | chr3.3:35763233-35763252 | None:intergenic | 45.0% |
| !! | GATCAGAAGAGTGCCAGATA+TGG | + | chr3.3:35763101-35763120 | MS.gene019128:CDS | 45.0% |
| !! | TAATGATGGTTTGGTGGCAG+GGG | - | chr3.3:35763953-35763972 | None:intergenic | 45.0% |
| AAAGTGGGAAGGAACACTCG+TGG | - | chr3.3:35761374-35761393 | None:intergenic | 50.0% | |
| AACACAACAGCTAGCAGGAG+AGG | + | chr3.3:35764102-35764121 | MS.gene019128:CDS | 50.0% | |
| ATGCTAAGGCAGGATGGCAA+TGG | + | chr3.3:35761641-35761660 | MS.gene019128:CDS | 50.0% | |
| CAGAGTGATAAGGAGGTCGA+GGG | - | chr3.3:35763914-35763933 | None:intergenic | 50.0% | |
| CATTGACACGGACACCTAAC+AGG | - | chr3.3:35762954-35762973 | None:intergenic | 50.0% | |
| CGTTTGCTTTCTTTGTCGGC+TGG | - | chr3.3:35763234-35763253 | None:intergenic | 50.0% | |
| GAGTTTCAGCTCAGCAAGCA+AGG | + | chr3.3:35763396-35763415 | MS.gene019128:CDS | 50.0% | |
| GATATGGGAGGTGAATCTGC+CGG | + | chr3.3:35763117-35763136 | MS.gene019128:CDS | 50.0% | |
| GATGATCCTCGAGTGAAAGG+AGG | + | chr3.3:35761559-35761578 | MS.gene019128:intron | 50.0% | |
| GCAAGCAACAAAGACTTCGC+CGG | - | chr3.3:35761352-35761371 | None:intergenic | 50.0% | |
| GCAAGCAAGGGAGAGGAAAA+AGG | + | chr3.3:35763409-35763428 | MS.gene019128:CDS | 50.0% | |
| GCAGATTCACCTCCCATATC+TGG | - | chr3.3:35763117-35763136 | None:intergenic | 50.0% | |
| GCTGACCTCTCTTCATCTTC+TGG | + | chr3.3:35761673-35761692 | MS.gene019128:CDS | 50.0% | |
| GGAACATCAGCCTCTCGTAA+AGG | + | chr3.3:35763138-35763157 | MS.gene019128:CDS | 50.0% | |
| GGAGAGGGTCAAAAGAAGAG+AGG | + | chr3.3:35763201-35763220 | MS.gene019128:CDS | 50.0% | |
| GGTGAGTACTACACAACAGG+AGG | - | chr3.3:35762833-35762852 | None:intergenic | 50.0% | |
| TCAGAGTGATAAGGAGGTCG+AGG | - | chr3.3:35763915-35763934 | None:intergenic | 50.0% | |
| TCATCACCTCCTTTCACTCG+AGG | - | chr3.3:35761568-35761587 | None:intergenic | 50.0% | |
| TGAACCAGTGCCTTTACGAG+AGG | - | chr3.3:35763151-35763170 | None:intergenic | 50.0% | |
| TGCTAAGGCAGGATGGCAAT+GGG | + | chr3.3:35761642-35761661 | MS.gene019128:CDS | 50.0% | |
| ! | CACGTGTCATTGTCAGACAC+CGG | - | chr3.3:35762890-35762909 | None:intergenic | 50.0% |
| !! | AAAGGCACTGGTTCAACTGC+TGG | + | chr3.3:35763156-35763175 | MS.gene019128:CDS | 50.0% |
| !! | AGAAGAGTGCCAGATATGGG+AGG | + | chr3.3:35763105-35763124 | MS.gene019128:CDS | 50.0% |
| !! | GCGAGTTTCTGAAACAGTCG+AGG | - | chr3.3:35762748-35762767 | None:intergenic | 50.0% |
| ACGGACACCTAACAGGACAC+CGG | - | chr3.3:35762947-35762966 | None:intergenic | 55.0% | |
| AGCAACAAAGACTTCGCCGG+TGG | - | chr3.3:35761349-35761368 | None:intergenic | 55.0% | |
| AGCAGGAGAGGAAGCAATGG+TGG | + | chr3.3:35764114-35764133 | MS.gene019128:CDS | 55.0% | |
| CTGGTCCTGAACGTGTTCAG+GGG | + | chr3.3:35763175-35763194 | MS.gene019128:CDS | 55.0% | |
| GCTAGCAGGAGAGGAAGCAA+TGG | + | chr3.3:35764111-35764130 | MS.gene019128:CDS | 55.0% | |
| GCTGGTCCTGAACGTGTTCA+GGG | + | chr3.3:35763174-35763193 | MS.gene019128:CDS | 55.0% | |
| TCCAGGTCTTGAGAGTGACG+AGG | + | chr3.3:35763077-35763096 | MS.gene019128:intron | 55.0% | |
| TCCTCGTCACTCTCAAGACC+TGG | - | chr3.3:35763081-35763100 | None:intergenic | 55.0% | |
| TGCTGGTCCTGAACGTGTTC+AGG | + | chr3.3:35763173-35763192 | MS.gene019128:CDS | 55.0% | |
| TGGTCCTGAACGTGTTCAGG+GGG | + | chr3.3:35763176-35763195 | MS.gene019128:CDS | 55.0% | |
| ! | TCAGCCTCTCGTAAAGGCAC+TGG | + | chr3.3:35763144-35763163 | MS.gene019128:CDS | 55.0% |
| CAGCTCAGCAAGCAAGGGAG+AGG | + | chr3.3:35763402-35763421 | MS.gene019128:CDS | 60.0% | |
| !! | TGATGGTTTGGTGGCAGGGG+TGG | - | chr3.3:35763950-35763969 | None:intergenic | 60.0% |
| ACGTGTTCAGGGGGCTGGAG+AGG | + | chr3.3:35763185-35763204 | MS.gene019128:CDS | 65.0% | |
| CCAGCCCCCTGAACACGTTC+AGG | - | chr3.3:35763183-35763202 | None:intergenic | 65.0% | |
| CCTGAACGTGTTCAGGGGGC+TGG | + | chr3.3:35763180-35763199 | MS.gene019128:CDS | 65.0% | |
| CGTGTTCAGGGGGCTGGAGA+GGG | + | chr3.3:35763186-35763205 | MS.gene019128:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 35761273 | 35764155 | 35761273 | ID=MS.gene019128 |
| chr3.3 | mRNA | 35761273 | 35764155 | 35761273 | ID=MS.gene019128.t1;Parent=MS.gene019128 |
| chr3.3 | exon | 35761273 | 35761474 | 35761273 | ID=MS.gene019128.t1.exon1;Parent=MS.gene019128.t1 |
| chr3.3 | CDS | 35761273 | 35761474 | 35761273 | ID=cds.MS.gene019128.t1;Parent=MS.gene019128.t1 |
| chr3.3 | exon | 35761560 | 35761741 | 35761560 | ID=MS.gene019128.t1.exon2;Parent=MS.gene019128.t1 |
| chr3.3 | CDS | 35761560 | 35761741 | 35761560 | ID=cds.MS.gene019128.t1;Parent=MS.gene019128.t1 |
| chr3.3 | exon | 35762273 | 35762390 | 35762273 | ID=MS.gene019128.t1.exon3;Parent=MS.gene019128.t1 |
| chr3.3 | CDS | 35762273 | 35762390 | 35762273 | ID=cds.MS.gene019128.t1;Parent=MS.gene019128.t1 |
| chr3.3 | exon | 35763082 | 35763262 | 35763082 | ID=MS.gene019128.t1.exon4;Parent=MS.gene019128.t1 |
| chr3.3 | CDS | 35763082 | 35763262 | 35763082 | ID=cds.MS.gene019128.t1;Parent=MS.gene019128.t1 |
| chr3.3 | exon | 35763382 | 35763538 | 35763382 | ID=MS.gene019128.t1.exon5;Parent=MS.gene019128.t1 |
| chr3.3 | CDS | 35763382 | 35763538 | 35763382 | ID=cds.MS.gene019128.t1;Parent=MS.gene019128.t1 |
| chr3.3 | exon | 35764093 | 35764155 | 35764093 | ID=MS.gene019128.t1.exon6;Parent=MS.gene019128.t1 |
| chr3.3 | CDS | 35764093 | 35764155 | 35764093 | ID=cds.MS.gene019128.t1;Parent=MS.gene019128.t1 |
| Gene Sequence |
| Protein sequence |
