AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019167


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019167.t1 MTR_3g450310 98.551 69 1 0 1 69 1 69 1.44e-45 147
MS.gene019167.t1 MTR_2g023580 64.407 59 21 0 11 69 47 105 5.45e-23 89.7
MS.gene019167.t1 MTR_8g086410 57.576 66 28 0 4 69 96 161 7.80e-23 92.0
MS.gene019167.t1 MTR_8g086410 57.576 66 28 0 4 69 96 161 7.94e-23 92.0
MS.gene019167.t1 MTR_8g086410 57.576 66 28 0 4 69 94 159 8.11e-23 92.0
MS.gene019167.t1 MTR_0223s0040 66.102 59 20 0 11 69 10 68 1.70e-22 89.4
MS.gene019167.t1 MTR_2g084230 62.295 61 23 0 9 69 87 147 2.55e-22 89.4
MS.gene019167.t1 MTR_2g084230 62.295 61 23 0 9 69 87 147 3.54e-22 89.7
MS.gene019167.t1 MTR_2g016220 59.091 66 27 0 4 69 74 139 4.03e-22 89.7
MS.gene019167.t1 MTR_2g016220 59.091 66 27 0 4 69 74 139 4.11e-22 89.7
MS.gene019167.t1 MTR_2g016220 59.091 66 27 0 4 69 74 139 4.38e-22 89.4
MS.gene019167.t1 MTR_1g112370 61.667 60 23 0 10 69 13 72 8.68e-22 88.2
MS.gene019167.t1 MTR_7g069660 53.623 69 32 0 1 69 53 121 1.50e-21 87.8
MS.gene019167.t1 MTR_1g080330 52.055 73 34 1 4 76 161 232 1.55e-19 81.6
MS.gene019167.t1 MTR_1g080330 56.061 66 28 1 4 69 161 225 2.60e-19 82.0
MS.gene019167.t1 MTR_7g115530 55.172 58 26 0 19 76 218 275 1.83e-18 79.0
MS.gene019167.t1 MTR_7g115530 60.784 51 20 0 19 69 218 268 2.34e-18 78.2
MS.gene019167.t1 MTR_7g115530 55.172 58 26 0 19 76 218 275 2.80e-18 78.6
MS.gene019167.t1 MTR_7g115530 55.172 58 26 0 19 76 218 275 3.56e-18 78.6
MS.gene019167.t1 MTR_7g115530 55.172 58 26 0 19 76 218 275 3.70e-18 79.0
MS.gene019167.t1 MTR_7g115530 60.784 51 20 0 19 69 218 268 3.99e-18 77.8
MS.gene019167.t1 MTR_7g098250 53.448 58 27 0 19 76 262 319 1.30e-17 77.4
MS.gene019167.t1 MTR_5g041350 56.863 51 22 0 19 69 15 65 2.49e-17 76.3
MS.gene019167.t1 MTR_5g027440 41.935 93 42 2 8 93 7 94 1.98e-16 73.2
MS.gene019167.t1 MTR_6g032990 54.902 51 23 0 19 69 42 92 2.29e-16 73.9
MS.gene019167.t1 MTR_2g086450 48.485 66 33 1 4 69 31 95 6.71e-16 72.4
MS.gene019167.t1 MTR_6g444980 62.745 51 19 0 19 69 35 85 7.38e-16 72.4
MS.gene019167.t1 MTR_6g444980 62.745 51 19 0 19 69 35 85 8.47e-16 72.0
MS.gene019167.t1 MTR_6g071625 39.759 83 46 1 18 100 201 279 1.48e-15 71.2
MS.gene019167.t1 MTR_2g027860 44.156 77 41 1 21 95 51 127 4.36e-15 70.1
MS.gene019167.t1 MTR_7g093030 56.604 53 23 0 17 69 210 262 6.07e-15 69.3
MS.gene019167.t1 MTR_7g093030 56.604 53 23 0 17 69 210 262 7.75e-15 69.3
MS.gene019167.t1 MTR_1g090670 60.784 51 20 0 19 69 44 94 7.80e-15 68.9
MS.gene019167.t1 MTR_8g066310 55.769 52 23 0 18 69 172 223 8.03e-15 69.3
MS.gene019167.t1 MTR_1g021520 44.928 69 36 1 1 69 110 176 8.43e-15 68.9
MS.gene019167.t1 MTR_1g053830 48.333 60 31 0 17 76 16 75 9.13e-15 65.1
MS.gene019167.t1 MTR_5g029470 53.846 52 24 0 18 69 218 269 1.68e-14 68.6
MS.gene019167.t1 MTR_3g064840 53.846 52 24 0 18 69 273 324 1.97e-14 68.6
MS.gene019167.t1 MTR_2g027800 58.824 51 21 0 19 69 39 89 2.51e-14 67.8
MS.gene019167.t1 MTR_2g027800 58.824 51 21 0 19 69 39 89 2.57e-14 67.4
MS.gene019167.t1 MTR_7g088070 57.143 49 21 0 21 69 52 100 2.59e-14 67.4
MS.gene019167.t1 MTR_7g088070 46.970 66 35 0 4 69 35 100 2.61e-14 67.4
MS.gene019167.t1 MTR_1g053835 54.717 53 24 0 17 69 256 308 6.05e-14 67.0
MS.gene019167.t1 MTR_1g053800 45.570 79 41 1 21 97 179 257 7.09e-14 66.6
MS.gene019167.t1 MTR_4g081710 50.980 51 25 0 19 69 17 67 1.44e-13 65.9
MS.gene019167.t1 MTR_4g021855 37.624 101 61 2 17 116 166 265 3.81e-13 64.3
MS.gene019167.t1 MTR_7g068600 41.667 96 50 2 6 98 3 95 4.09e-13 63.5
MS.gene019167.t1 MTR_7g093010 53.704 54 25 0 21 74 215 268 6.30e-13 63.9
MS.gene019167.t1 MTR_4g021790 50.847 59 28 1 11 69 160 217 2.41e-12 62.0
MS.gene019167.t1 MTR_4g064730 49.180 61 30 1 9 69 121 180 6.34e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019167.t1 AT2G02060 60.000 70 28 0 4 73 14 83 1.74e-23 91.7
MS.gene019167.t1 AT2G02060 60.000 70 28 0 4 73 14 83 1.74e-23 91.7
MS.gene019167.t1 AT2G40260 61.765 68 25 1 3 69 65 132 9.53e-23 91.7
MS.gene019167.t1 AT1G14600 56.164 73 32 0 2 74 6 78 1.63e-22 89.0
MS.gene019167.t1 AT2G42660 61.017 59 23 0 11 69 42 100 1.02e-21 87.0
MS.gene019167.t1 AT4G04605 58.730 63 26 0 11 73 6 68 2.61e-21 85.1
MS.gene019167.t1 AT2G38300 57.812 64 27 0 6 69 41 104 7.45e-21 85.9
MS.gene019167.t1 AT4G04555 57.627 59 25 0 11 69 6 64 6.09e-18 73.6
MS.gene019167.t1 AT4G04580 52.542 59 28 0 11 69 6 64 1.43e-17 74.3
MS.gene019167.t1 AT3G04030 35.593 118 68 3 1 115 28 140 5.80e-17 75.5
MS.gene019167.t1 AT4G28610 55.357 56 25 0 21 76 227 282 6.06e-17 75.5
MS.gene019167.t1 AT3G04030 35.593 118 68 3 1 115 28 140 7.00e-17 75.5
MS.gene019167.t1 AT4G13640 56.667 60 26 0 19 78 37 96 1.05e-16 73.9
MS.gene019167.t1 AT4G13640 56.667 60 26 0 19 78 37 96 1.12e-16 73.9
MS.gene019167.t1 AT5G45580 55.556 54 24 0 16 69 4 57 1.52e-16 73.2
MS.gene019167.t1 AT5G45580 55.556 54 24 0 16 69 20 73 1.54e-16 73.6
MS.gene019167.t1 AT2G01060 53.623 69 28 2 1 69 1 65 1.70e-16 73.6
MS.gene019167.t1 AT3G24120 62.745 51 19 0 19 69 41 91 2.18e-16 73.2
MS.gene019167.t1 AT3G24120 62.745 51 19 0 19 69 41 91 2.24e-16 73.2
MS.gene019167.t1 AT5G18240 47.826 69 35 1 1 69 28 95 3.70e-16 73.2
MS.gene019167.t1 AT5G18240 47.826 69 35 1 1 69 28 95 3.70e-16 73.2
MS.gene019167.t1 AT5G18240 47.826 69 35 1 1 69 28 95 4.06e-16 73.2
MS.gene019167.t1 AT5G18240 47.826 69 35 1 1 69 28 95 4.06e-16 73.2
MS.gene019167.t1 AT1G79430 62.745 51 19 0 19 69 34 84 4.10e-16 73.2
MS.gene019167.t1 AT5G18240 47.826 69 35 1 1 69 28 95 4.29e-16 73.2
MS.gene019167.t1 AT3G12730 60.784 51 20 0 19 69 23 73 7.85e-16 70.9
MS.gene019167.t1 AT5G42630 46.154 65 33 1 18 82 104 166 3.11e-15 69.3
MS.gene019167.t1 AT2G20400 53.571 56 26 0 21 76 233 288 3.21e-15 70.5
MS.gene019167.t1 AT2G20400 53.571 56 26 0 21 76 233 288 3.30e-15 70.5
MS.gene019167.t1 AT5G42630 46.154 65 33 1 18 82 104 166 5.73e-15 69.3
MS.gene019167.t1 AT1G32240 53.846 52 24 0 18 69 212 263 9.54e-15 69.3
MS.gene019167.t1 AT5G29000 46.479 71 37 1 6 76 219 288 1.05e-14 68.9
MS.gene019167.t1 AT1G32240 53.846 52 24 0 18 69 212 263 1.06e-14 69.3
MS.gene019167.t1 AT5G29000 46.479 71 37 1 6 76 176 245 1.14e-14 68.9
MS.gene019167.t1 AT5G29000 46.479 71 37 1 6 76 176 245 1.14e-14 68.9
MS.gene019167.t1 AT5G29000 46.479 71 37 1 6 76 219 288 1.22e-14 68.9
MS.gene019167.t1 AT5G16560 53.846 52 24 0 18 69 218 269 1.35e-14 68.9
MS.gene019167.t1 AT3G04450 48.333 60 30 1 17 76 237 295 1.42e-14 68.6
MS.gene019167.t1 AT3G04450 48.333 60 30 1 17 76 237 295 1.77e-14 68.6
MS.gene019167.t1 AT3G04450 48.333 60 30 1 17 76 197 255 1.96e-14 68.6
MS.gene019167.t1 AT3G04450 48.333 60 30 1 17 76 197 255 1.96e-14 68.6
MS.gene019167.t1 AT4G17695 50.000 52 26 0 18 69 163 214 2.13e-14 68.2
MS.gene019167.t1 AT2G06020 48.214 56 29 0 14 69 81 136 3.27e-14 67.4
MS.gene019167.t1 AT5G06800 53.571 56 26 0 21 76 194 249 3.91e-14 67.0
MS.gene019167.t1 AT3G13040 57.143 49 21 0 21 69 243 291 6.32e-14 67.0
MS.gene019167.t1 AT3G13040 57.143 49 21 0 21 69 243 291 6.32e-14 67.0
MS.gene019167.t1 AT3G13040 57.143 49 21 0 21 69 243 291 6.32e-14 67.0
MS.gene019167.t1 AT3G04030 33.898 118 69 4 1 115 28 139 6.44e-14 67.0
MS.gene019167.t1 AT5G06800 53.571 56 26 0 21 76 194 249 7.58e-14 66.6
MS.gene019167.t1 AT5G06800 53.571 56 26 0 21 76 194 249 7.65e-14 66.6
MS.gene019167.t1 AT1G69580 49.020 51 26 0 19 69 34 84 1.39e-13 65.9
MS.gene019167.t1 AT1G69580 49.020 51 26 0 19 69 34 84 1.40e-13 65.9
MS.gene019167.t1 AT5G44190 54.717 53 23 1 18 70 146 197 2.76e-11 59.3
MS.gene019167.t1 AT5G44190 55.769 52 22 1 18 69 146 196 5.40e-11 58.5
MS.gene019167.t1 AT3G62670 45.588 68 32 2 17 79 209 276 5.88e-11 58.5

Find 21 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCTTTGGGGTGAACAAC+TGG 0.338441 3.3:-37031639 None:intergenic
ATCATATTCAAAATGTGTTT+AGG 0.358434 3.3:-37029112 None:intergenic
ACAAAGTATTGATGAAGTTC+CGG 0.415452 3.3:-37028772 None:intergenic
GTTCAAACTGTTGAAAGTCT+TGG 0.422209 3.3:+37028793 MS.gene019167:CDS
AACTATTCTTGCACCAACAC+TGG 0.497047 3.3:+37031577 MS.gene019167:CDS
AACAATAATTCTAAGAGAAG+TGG 0.514149 3.3:+37028703 MS.gene019167:CDS
TTGAATATGATGCAAGTGAA+GGG 0.529830 3.3:+37029124 MS.gene019167:CDS
CAAAACAGCCACGCCTTCGA+TGG 0.531209 3.3:+37028746 MS.gene019167:CDS
TTTGAATATGATGCAAGTGA+AGG 0.533245 3.3:+37029123 MS.gene019167:CDS
GGTGAACAACTGGAGCAGAT+TGG 0.536299 3.3:-37031629 None:intergenic
TCCGGTGTCCATCGAAGGCG+TGG 0.541150 3.3:-37028754 None:intergenic
CCATATTAAAAGTCATCTCC+AGG 0.551481 3.3:+37029159 MS.gene019167:CDS
TTTGATAAAATTTACCTTTG+GGG 0.582723 3.3:-37031650 None:intergenic
GAAGTTCCGGTGTCCATCGA+AGG 0.585063 3.3:-37028759 None:intergenic
CAAACTGTTGAAAGTCTTGG+TGG 0.585108 3.3:+37028796 MS.gene019167:CDS
GCTCCAGTTGTTCACCCCAA+AGG 0.588268 3.3:+37031636 MS.gene019167:CDS
ACCAACACTGGAAGAAAACA+AGG 0.606646 3.3:+37031589 MS.gene019167:CDS
GCCACGCCTTCGATGGACAC+CGG 0.606915 3.3:+37028753 MS.gene019167:CDS
TTAGATGTACAGGAACGTGA+AGG 0.615592 3.3:+37031550 MS.gene019167:intron
TAGATGTACAGGAACGTGAA+GGG 0.615844 3.3:+37031551 MS.gene019167:intron
TGAATATGATGCAAGTGAAG+GGG 0.650743 3.3:+37029125 MS.gene019167:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTCTATTAAATTAGTA+AGG + chr3.3:37032361-37032380 MS.gene019167:intron 10.0%
!! ATATTAAATACTATATCAAA+TGG - chr3.3:37030048-37030067 None:intergenic 10.0%
!! ATATTCTATTAAATTAGTAA+GGG + chr3.3:37032362-37032381 MS.gene019167:intron 10.0%
!! TTATTATATGATATCAATAT+AGG - chr3.3:37030387-37030406 None:intergenic 10.0%
!! TTGTATATATTATAATAATG+AGG - chr3.3:37029242-37029261 None:intergenic 10.0%
!!! TATTATATACGTTTTTTTAA+AGG - chr3.3:37031406-37031425 None:intergenic 10.0%
!!! TATTTTTATTTCATTTTAGA+GGG + chr3.3:37032713-37032732 MS.gene019167:intron 10.0%
!!! TTATTTTTATTTCATTTTAG+AGG + chr3.3:37032712-37032731 MS.gene019167:intron 10.0%
!!! TTTCGTTTTTTTTTTTTTTT+TGG - chr3.3:37032496-37032515 None:intergenic 10.0%
!!! TTTTTATTCAAAAAATCAAA+TGG + chr3.3:37031680-37031699 MS.gene019167:intron 10.0%
!! AAAAAAAATAGTGATATGAT+AGG + chr3.3:37032153-37032172 MS.gene019167:intron 15.0%
!! AATATTCACATATTATGAAA+AGG - chr3.3:37029396-37029415 None:intergenic 15.0%
!! ATTATGTATAAGTATTAAGA+CGG + chr3.3:37029024-37029043 MS.gene019167:intron 15.0%
!! ATTTGATAAAATTTACCTTT+GGG - chr3.3:37031654-37031673 None:intergenic 15.0%
!!! ACCAATTTTTACTTATATTT+TGG + chr3.3:37030985-37031004 MS.gene019167:intron 15.0%
!!! AGATTAACTATTATTAGTTT+TGG - chr3.3:37031982-37032001 None:intergenic 15.0%
!!! ATAATCATCATGTTTTATAT+AGG + chr3.3:37028841-37028860 MS.gene019167:intron 15.0%
!!! ATCTAAAATTATTTTAAAGG+TGG - chr3.3:37032389-37032408 None:intergenic 15.0%
!!! CCAATTTTTACTTATATTTT+GGG + chr3.3:37030986-37031005 MS.gene019167:intron 15.0%
!!! GAGATCTAAAATTATTTTAA+AGG - chr3.3:37032392-37032411 None:intergenic 15.0%
!!! GTACAAAATTGAATTTTATT+AGG + chr3.3:37032312-37032331 MS.gene019167:intron 15.0%
!!! TTATTTTCTTCTTTTAATCA+TGG + chr3.3:37028972-37028991 MS.gene019167:intron 15.0%
!!! TTTTCATAATATGTGAATAT+TGG + chr3.3:37029395-37029414 MS.gene019167:intron 15.0%
!!! TTTTCATTCACTTTTTTATT+AGG + chr3.3:37031129-37031148 MS.gene019167:intron 15.0%
!! AAACAAATACATGATTACAT+TGG + chr3.3:37030525-37030544 MS.gene019167:intron 20.0%
!! AAGTATATGTTACCAAAAAA+AGG + chr3.3:37031045-37031064 MS.gene019167:intron 20.0%
!! AATGAGGATTAAATTAATTG+AGG - chr3.3:37029226-37029245 None:intergenic 20.0%
!! ACTATCATTGTTGAATAAAT+AGG + chr3.3:37032247-37032266 MS.gene019167:intron 20.0%
!! AGTAGTAAAGTTATTTAGAT+TGG - chr3.3:37032599-37032618 None:intergenic 20.0%
!! ATCATATTCAAAATGTGTTT+AGG - chr3.3:37029115-37029134 None:intergenic 20.0%
!! ATGAAAATCAATCAAAGAAA+TGG - chr3.3:37032762-37032781 None:intergenic 20.0%
!! ATGATTAACAAAGCATATTA+TGG - chr3.3:37028923-37028942 None:intergenic 20.0%
!! ATTTATTCAACAATGATAGT+TGG - chr3.3:37032247-37032266 None:intergenic 20.0%
!! CAATACCTTAATTACATTAA+GGG - chr3.3:37029820-37029839 None:intergenic 20.0%
!! CATTTGATAAAATTTACCTT+TGG - chr3.3:37031655-37031674 None:intergenic 20.0%
!! CCCAAAATATAAGTAAAAAT+TGG - chr3.3:37030989-37031008 None:intergenic 20.0%
!! GAATATAATAGAACTAAAGT+AGG - chr3.3:37029428-37029447 None:intergenic 20.0%
!! GTAGTAAAGTTATTTAGATT+GGG - chr3.3:37032598-37032617 None:intergenic 20.0%
!! GTCATTAAATTTATGTTCAT+CGG - chr3.3:37030158-37030177 None:intergenic 20.0%
!! TCTTGAAAAAATATGTTCAT+CGG - chr3.3:37030253-37030272 None:intergenic 20.0%
!! TTAAAAGTAAAAATTAGACC+TGG + chr3.3:37029316-37029335 MS.gene019167:intron 20.0%
!! TTTCTGAACGAAATAATTTA+TGG + chr3.3:37031357-37031376 MS.gene019167:intron 20.0%
!! TTTGATAAAATTTACCTTTG+GGG - chr3.3:37031653-37031672 None:intergenic 20.0%
!!! AAACGCATTTTAAAATAATC+TGG - chr3.3:37030554-37030573 None:intergenic 20.0%
!!! AACATATTTTTGATAGACTA+TGG + chr3.3:37029357-37029376 MS.gene019167:intron 20.0%
!!! AAGAAGAGATATAATGTTTT+AGG - chr3.3:37031930-37031949 None:intergenic 20.0%
!!! ACCAATTTTTGCTTATATTT+TGG - chr3.3:37030908-37030927 None:intergenic 20.0%
!!! ACTTTTATATGCTTGAAAAT+CGG + chr3.3:37030827-37030846 MS.gene019167:intron 20.0%
!!! ATCTTTTTATTTTAGGAAAG+AGG - chr3.3:37032430-37032449 None:intergenic 20.0%
!!! ATTTTGTCATCAAAAGTAAA+AGG - chr3.3:37029624-37029643 None:intergenic 20.0%
!!! CAAAGGTAAATTTTATCAAA+TGG + chr3.3:37031653-37031672 MS.gene019167:intron 20.0%
!!! CCAATTTTTGCTTATATTTT+GGG - chr3.3:37030907-37030926 None:intergenic 20.0%
!!! CTCTAACACTTATTTTTTAT+TGG + chr3.3:37030305-37030324 MS.gene019167:intron 20.0%
!!! TATATGTTACATTCTTGTTT+AGG + chr3.3:37031019-37031038 MS.gene019167:intron 20.0%
!!! TCATCAATCTTTTTTTCTTT+AGG + chr3.3:37032797-37032816 MS.gene019167:intron 20.0%
!!! TCTAATATTCACTCTTTTAT+TGG - chr3.3:37031230-37031249 None:intergenic 20.0%
!!! TCTTTTGATAATGAAATCAT+GGG + chr3.3:37029467-37029486 MS.gene019167:intron 20.0%
!!! TCTTTTTATTTTAGGAAAGA+GGG - chr3.3:37032429-37032448 None:intergenic 20.0%
!!! TTAATCATGGTTTTAAATTG+CGG + chr3.3:37028985-37029004 MS.gene019167:intron 20.0%
!!! TTATCACTCCTATTTTTTAA+TGG + chr3.3:37030435-37030454 MS.gene019167:intron 20.0%
!!! TTCTTTTGATAATGAAATCA+TGG + chr3.3:37029466-37029485 MS.gene019167:intron 20.0%
!!! TTGTATTATTTTTGTCTTGT+GGG + chr3.3:37030126-37030145 MS.gene019167:intron 20.0%
!!! TTTTTACTTATATTTTGGGA+CGG + chr3.3:37030990-37031009 MS.gene019167:intron 20.0%
! AAAATCTGTATATCTAACTG+AGG - chr3.3:37029849-37029868 None:intergenic 25.0%
! AAATCTGTATATCTAACTGA+GGG - chr3.3:37029848-37029867 None:intergenic 25.0%
! AATATGAACTTCCAAAAAGT+TGG + chr3.3:37031795-37031814 MS.gene019167:intron 25.0%
! ACCATCCAAAAAAGATTTAA+AGG - chr3.3:37031892-37031911 None:intergenic 25.0%
! AGGATTAAATTAATTGAGGT+TGG - chr3.3:37029222-37029241 None:intergenic 25.0%
! AGGTTGGATCAAATATATAT+GGG - chr3.3:37029206-37029225 None:intergenic 25.0%
! AGTTCTATTATATTCCCTTA+TGG + chr3.3:37029433-37029452 MS.gene019167:intron 25.0%
! ATCCAAAAAAGATTTAAAGG+TGG - chr3.3:37031889-37031908 None:intergenic 25.0%
! ATGATGTCATAGAGAAAATA+AGG + chr3.3:37032188-37032207 MS.gene019167:intron 25.0%
! CAAAAGTTAAGCAAAGTAAA+AGG - chr3.3:37032030-37032049 None:intergenic 25.0%
! CATTCTCTTAACATTATTGA+TGG - chr3.3:37031519-37031538 None:intergenic 25.0%
! CCAATACCTTAATTACATTA+AGG - chr3.3:37029821-37029840 None:intergenic 25.0%
! CCCAAAATATAAGCAAAAAT+TGG + chr3.3:37030904-37030923 MS.gene019167:intron 25.0%
! CCTTAATGTAATTAAGGTAT+TGG + chr3.3:37029818-37029837 MS.gene019167:intron 25.0%
! CTAATCCCTTAATGTAATTA+AGG + chr3.3:37029812-37029831 MS.gene019167:intron 25.0%
! CTTTGGTACCATTAAAAAAT+AGG - chr3.3:37030446-37030465 None:intergenic 25.0%
! TCAACAAAAGTTAATGTATC+TGG - chr3.3:37030966-37030985 None:intergenic 25.0%
! TCAACGAAAGTTAATGTATT+TGG + chr3.3:37030927-37030946 MS.gene019167:intron 25.0%
! TTTAATCAAGGTGAATTCTT+TGG - chr3.3:37030463-37030482 None:intergenic 25.0%
!! AACAATAATTCTAAGAGAAG+TGG + chr3.3:37028703-37028722 MS.gene019167:CDS 25.0%
!! AAGAAAGAGAATTTTCCATA+AGG - chr3.3:37029451-37029470 None:intergenic 25.0%
!! AGAAAGAGAATTTTCCATAA+GGG - chr3.3:37029450-37029469 None:intergenic 25.0%
!! AGGTAAACACTTACTATTTT+TGG + chr3.3:37032290-37032309 MS.gene019167:intron 25.0%
!! ATTTGAGATCTCTTAATTGA+AGG - chr3.3:37028893-37028912 None:intergenic 25.0%
!! TACCTTTGAAAAAATTTGTG+AGG - chr3.3:37032275-37032294 None:intergenic 25.0%
!! TTTGAGATCTCTTAATTGAA+GGG - chr3.3:37028892-37028911 None:intergenic 25.0%
!! TTTGCAAATTAATTTTGCAG+AGG + chr3.3:37029084-37029103 MS.gene019167:intron 25.0%
!!! AACCTCACAAATTTTTTCAA+AGG + chr3.3:37032270-37032289 MS.gene019167:intron 25.0%
!!! ACCTTTAAATCTTTTTTGGA+TGG + chr3.3:37031888-37031907 MS.gene019167:intron 25.0%
!!! CTTTGATTGATTTTCATTTC+TGG + chr3.3:37032765-37032784 MS.gene019167:intron 25.0%
!!! GATGAACATATTTTTTCAAG+AGG + chr3.3:37030252-37030271 MS.gene019167:intron 25.0%
!!! GTTGTATTATTTTTGTCTTG+TGG + chr3.3:37030125-37030144 MS.gene019167:intron 25.0%
!!! TCAAAGAAATGGACTAATAT+AGG - chr3.3:37032751-37032770 None:intergenic 25.0%
!!! TCTCTATACCGTTTTTTTAT+TGG + chr3.3:37031999-37032018 MS.gene019167:intron 25.0%
!!! TCTTCACTTTTTCCTTTTTT+TGG - chr3.3:37031060-37031079 None:intergenic 25.0%
!!! TGGATGCATCTTTTTATTTT+AGG - chr3.3:37032437-37032456 None:intergenic 25.0%
!!! TTTTTGCTTATATTTTGGGA+CGG - chr3.3:37030903-37030922 None:intergenic 25.0%
!!! TTTTTTGGATGGTTCATATT+AGG + chr3.3:37031899-37031918 MS.gene019167:intron 25.0%
!!! TTTTTTTTGGTAGATCATGA+AGG - chr3.3:37032483-37032502 None:intergenic 25.0%
AACGTTTGTGAGATATACAT+GGG - chr3.3:37029589-37029608 None:intergenic 30.0%
AAGAAACAAAATCCAGTCTA+GGG + chr3.3:37029494-37029513 MS.gene019167:intron 30.0%
AAGATGTGTATATCTTGATG+AGG - chr3.3:37030490-37030509 None:intergenic 30.0%
AAGCAATTAGCAATTACCAT+AGG + chr3.3:37030617-37030636 MS.gene019167:intron 30.0%
AATAGAACTAAAGTAGGAAC+AGG - chr3.3:37029422-37029441 None:intergenic 30.0%
ACAATTACAACAGTAGTATG+TGG + chr3.3:37029534-37029553 MS.gene019167:intron 30.0%
ACATGAACTATATATGTACC+TGG - chr3.3:37029180-37029199 None:intergenic 30.0%
AGGCTTGTCCAATAAAAAAA+CGG - chr3.3:37032010-37032029 None:intergenic 30.0%
ATTAGCAATTACCATAGGTT+AGG + chr3.3:37030622-37030641 MS.gene019167:intron 30.0%
CAATAATGTTAAGAGAATGC+TGG + chr3.3:37031520-37031539 MS.gene019167:intron 30.0%
GAGGTTGGATCAAATATATA+TGG - chr3.3:37029207-37029226 None:intergenic 30.0%
GCTAATCTTGAGAATGATTA+CGG + chr3.3:37030870-37030889 MS.gene019167:intron 30.0%
GTTAACATACAGTTGTACTT+CGG - chr3.3:37032088-37032107 None:intergenic 30.0%
TCACATGCTATATATGTAGT+AGG - chr3.3:37032110-37032129 None:intergenic 30.0%
TTAAATTTATGTTCATCGGC+TGG - chr3.3:37030154-37030173 None:intergenic 30.0%
TTGAATATGATGCAAGTGAA+GGG + chr3.3:37029124-37029143 MS.gene019167:CDS 30.0%
TTTAGATTTCCGAACAACAT+AGG - chr3.3:37031271-37031290 None:intergenic 30.0%
TTTGAATATGATGCAAGTGA+AGG + chr3.3:37029123-37029142 MS.gene019167:CDS 30.0%
! CATTCTTTTATACGAGATGA+GGG - chr3.3:37029893-37029912 None:intergenic 30.0%
! CTGGAGATGACTTTTAATAT+GGG - chr3.3:37029161-37029180 None:intergenic 30.0%
! GCATGTTCACGTTTTTATAA+AGG + chr3.3:37030015-37030034 MS.gene019167:intron 30.0%
! TCATTCTTTTATACGAGATG+AGG - chr3.3:37029894-37029913 None:intergenic 30.0%
!! ACAAAGTATTGATGAAGTTC+CGG - chr3.3:37028775-37028794 None:intergenic 30.0%
!! AGTTGAAAAGTTGATGTATG+TGG + chr3.3:37032646-37032665 MS.gene019167:intron 30.0%
!! GAAAGTCTTTTGTTGTGTAA+AGG - chr3.3:37032945-37032964 None:intergenic 30.0%
!! TGATGAGGTGATTTTAATCA+AGG - chr3.3:37030475-37030494 None:intergenic 30.0%
!!! GTCCACCTTTAAATCTTTTT+TGG + chr3.3:37031884-37031903 MS.gene019167:intron 30.0%
AAAGTAACAACGTAGAGAAG+TGG - chr3.3:37029682-37029701 None:intergenic 35.0%
AAGTAACAACGTAGAGAAGT+GGG - chr3.3:37029681-37029700 None:intergenic 35.0%
AATCACACTTACACCAAGTA+TGG - chr3.3:37031296-37031315 None:intergenic 35.0%
AATGTTAAGAGAATGCTGGT+CGG + chr3.3:37031524-37031543 MS.gene019167:intron 35.0%
AGAGAAGTGGGGTTTATAAT+GGG - chr3.3:37029669-37029688 None:intergenic 35.0%
AGCACTAATCCTATGTTGTT+CGG + chr3.3:37031259-37031278 MS.gene019167:intron 35.0%
ATTACCATAGGTTAGGTACA+TGG + chr3.3:37030629-37030648 MS.gene019167:intron 35.0%
ATTGATATTCCTCGATCTGA+AGG - chr3.3:37032910-37032929 None:intergenic 35.0%
CAACGTTTGTGAGATATACA+TGG - chr3.3:37029590-37029609 None:intergenic 35.0%
CCAAACTATATCAGAGACTT+TGG + chr3.3:37032566-37032585 MS.gene019167:intron 35.0%
CCAAAGTCTCTGATATAGTT+TGG - chr3.3:37032569-37032588 None:intergenic 35.0%
CCATATTAAAAGTCATCTCC+AGG + chr3.3:37029159-37029178 MS.gene019167:CDS 35.0%
GAAAAAATATGTTCATCGGC+TGG - chr3.3:37030249-37030268 None:intergenic 35.0%
GAAGAAACAAAATCCAGTCT+AGG + chr3.3:37029493-37029512 MS.gene019167:intron 35.0%
GGAAATCTAAAAGCCATACT+TGG + chr3.3:37031280-37031299 MS.gene019167:intron 35.0%
GTTCAAACTGTTGAAAGTCT+TGG + chr3.3:37028793-37028812 MS.gene019167:CDS 35.0%
TAGAGAAGTGGGGTTTATAA+TGG - chr3.3:37029670-37029689 None:intergenic 35.0%
TGAATATGATGCAAGTGAAG+GGG + chr3.3:37029125-37029144 MS.gene019167:CDS 35.0%
TTACCATAGGTTAGGTACAT+GGG + chr3.3:37030630-37030649 MS.gene019167:intron 35.0%
TTAGCAAATGAAGAGAAGTG+TGG - chr3.3:37030855-37030874 None:intergenic 35.0%
TTGATATTCCTCGATCTGAA+GGG - chr3.3:37032909-37032928 None:intergenic 35.0%
! CCTGGAGATGACTTTTAATA+TGG - chr3.3:37029162-37029181 None:intergenic 35.0%
! GTAAGAGTTCACCAACTTTT+TGG - chr3.3:37031809-37031828 None:intergenic 35.0%
! TGAGATGCTATAAAAGCACA+CGG + chr3.3:37030771-37030790 MS.gene019167:intron 35.0%
! TTTTCTCTTTGTCTTTCGTC+AGG + chr3.3:37030714-37030733 MS.gene019167:intron 35.0%
!!! TACTTATATTTTGGGACGGA+GGG + chr3.3:37030994-37031013 MS.gene019167:intron 35.0%
!!! TTACTTATATTTTGGGACGG+AGG + chr3.3:37030993-37031012 MS.gene019167:intron 35.0%
AACTATTCTTGCACCAACAC+TGG + chr3.3:37031577-37031596 MS.gene019167:CDS 40.0%
ACCAACACTGGAAGAAAACA+AGG + chr3.3:37031589-37031608 MS.gene019167:CDS 40.0%
AGTAACAACGTAGAGAAGTG+GGG - chr3.3:37029680-37029699 None:intergenic 40.0%
CAAACTGTTGAAAGTCTTGG+TGG + chr3.3:37028796-37028815 MS.gene019167:CDS 40.0%
CCATGTTAGACCTCTTCTTT+GGG + chr3.3:37032454-37032473 MS.gene019167:intron 40.0%
CTGCAAAAAATACCCTAGAC+TGG - chr3.3:37029509-37029528 None:intergenic 40.0%
TAGATGTACAGGAACGTGAA+GGG + chr3.3:37031551-37031570 MS.gene019167:intron 40.0%
TCCATGTTAGACCTCTTCTT+TGG + chr3.3:37032453-37032472 MS.gene019167:intron 40.0%
TCGATCTGAAGGGAAATGAA+AGG - chr3.3:37032899-37032918 None:intergenic 40.0%
TTAGATGTACAGGAACGTGA+AGG + chr3.3:37031550-37031569 MS.gene019167:intron 40.0%
TTTCATTTCCCTTCAGATCG+AGG + chr3.3:37032898-37032917 MS.gene019167:intron 40.0%
!! TGGTCGGTTTTTAGATGTAC+AGG + chr3.3:37031540-37031559 MS.gene019167:intron 40.0%
!!! GACGGTGAATTTTTTCGCTA+TGG + chr3.3:37029042-37029061 MS.gene019167:intron 40.0%
!!! TGCTTATATTTTGGGACGGA+AGG - chr3.3:37030899-37030918 None:intergenic 40.0%
AGACCAAGAGAAGAAGATCC+AGG - chr3.3:37029337-37029356 None:intergenic 45.0%
AGACCTGGATCTTCTTCTCT+TGG + chr3.3:37029331-37029350 MS.gene019167:intron 45.0%
ATGCCCATGTACCTAACCTA+TGG - chr3.3:37030636-37030655 None:intergenic 45.0%
CCCAAAGAAGAGGTCTAACA+TGG - chr3.3:37032457-37032476 None:intergenic 45.0%
!! ATGAAGGCATCCCAAAGAAG+AGG - chr3.3:37032467-37032486 None:intergenic 45.0%
!! TTACCTTTGGGGTGAACAAC+TGG - chr3.3:37031642-37031661 None:intergenic 45.0%
!!! GCCTTGTTTTCTTCCAGTGT+TGG - chr3.3:37031593-37031612 None:intergenic 45.0%
!! AAAATGAAATAAAAATAAAA+AGG - chr3.3:37032710-37032729 None:intergenic 5.0%
GGTGAACAACTGGAGCAGAT+TGG - chr3.3:37031632-37031651 None:intergenic 50.0%
!!! GGCGTGGCTGTTTTGATTTG+TGG - chr3.3:37028741-37028760 None:intergenic 50.0%
CAAAACAGCCACGCCTTCGA+TGG + chr3.3:37028746-37028765 MS.gene019167:CDS 55.0%
GAAGTTCCGGTGTCCATCGA+AGG - chr3.3:37028762-37028781 None:intergenic 55.0%
GCTCCAGTTGTTCACCCCAA+AGG + chr3.3:37031636-37031655 MS.gene019167:CDS 55.0%
GCCACGCCTTCGATGGACAC+CGG + chr3.3:37028753-37028772 MS.gene019167:CDS 65.0%
TCCGGTGTCCATCGAAGGCG+TGG - chr3.3:37028757-37028776 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 37028697 37032976 37028697 ID=MS.gene019167
chr3.3 mRNA 37028697 37032976 37028697 ID=MS.gene019167.t1;Parent=MS.gene019167
chr3.3 exon 37028697 37028826 37028697 ID=MS.gene019167.t1.exon1;Parent=MS.gene019167.t1
chr3.3 CDS 37028697 37028826 37028697 ID=cds.MS.gene019167.t1;Parent=MS.gene019167.t1
chr3.3 exon 37029104 37029180 37029104 ID=MS.gene019167.t1.exon2;Parent=MS.gene019167.t1
chr3.3 CDS 37029104 37029180 37029104 ID=cds.MS.gene019167.t1;Parent=MS.gene019167.t1
chr3.3 exon 37031562 37031657 37031562 ID=MS.gene019167.t1.exon3;Parent=MS.gene019167.t1
chr3.3 CDS 37031562 37031657 37031562 ID=cds.MS.gene019167.t1;Parent=MS.gene019167.t1
chr3.3 exon 37032914 37032976 37032914 ID=MS.gene019167.t1.exon4;Parent=MS.gene019167.t1
chr3.3 CDS 37032914 37032976 37032914 ID=cds.MS.gene019167.t1;Parent=MS.gene019167.t1
Gene Sequence

>MS.gene019167

ATGAAGAACAATAATTCTAAGAGAAGTGGTGTAAGAAAATACCACAAATCAAAACAGCCACGCCTTCGATGGACACCGGAACTTCATCAATACTTTGTTCAAACTGTTGAAAGTCTTGGTGGAAAAGATAGTATGTTTTTCTTCATAATCATCATGTTTTATATAGGATTTGCTACTAATTTATTTGACGATCCCTTCAATTAAGAGATCTCAAATATCTTTTCCATAATATGCTTTGTTAATCATCTTTCATATCTTTGTGTTCTATTTTCAGTTTATTTTCTTCTTTTAATCATGGTTTTAAATTGCGGTCGCTGATATGAAAGAATTATGTATAAGTATTAAGACGGTGAATTTTTTCGCTATGGTTTAACGAGTGCTAATAATTTTGCAAATTAATTTTGCAGAGGCTAGTCCTAAACACATTTTGAATATGATGCAAGTGAAGGGGTTGAGAATCTCCCATATTAAAAGTCATCTCCAGGTACATATATAGTTCATGTTCACCCATATATATTTGATCCAACCTCAATTAATTTAATCCTCATTATTATAATATATACAATTATGCAAAACTAATTTATCTATCAATGAAATATATTTTCTTGCTCATTTTCTTTTAAAAGTAAAAATTAGACCTGGATCTTCTTCTCTTGGTCTAACATATTTTTGATAGACTATGGTATCATAATAACTCCTTTTCATAATATGTGAATATTGGACCTGTTCCTACTTTAGTTCTATTATATTCCCTTATGGAAAATTCTCTTTCTTTTGATAATGAAATCATGGGACTGAAGAAACAAAATCCAGTCTAGGGTATTTTTTGCAGTACGTACAATTACAACAGTAGTATGTGGAAACAATGATTTTGTGACTTTTCACAATTCCCATGTATATCTCACAAACGTTGATGATTATCTTCCTTTTACTTTTGATGACAAAATTTCATCGAGACTCATCTTTTATCCCATTATAAACCCCACTTCTCTACGTTGTTACTTTTGTTAAGCTTTTTCACATCGTGTGAGATGAAATTCTGAAATGATCTAGTAATAACTAATTTATTTAACTAGTTAAAAATTATTTTAATCTATGAATGTATTAAAGTGTCACTAATCCCTTAATGTAATTAAGGTATTGGATGACCCTCAGTTAGATATACAGATTTTCATATCATATCTCATATTTGACCCTCATCTCGTATAAAAGAATGAACATCTTAAACATGATTCTAGTAGTCTAATAATAGTGATTCGTGCGACAAATTTTTTAATAGACTTTGAGATTATTTTAGTAATGTTGCAACTAATATTGTGCATGTTCACGTTTTTATAAAGGCTAACATCCATTTGATATAGTATTTAATATCTAATAATTTAATGACATATGTTTTTTATACTTTATTAATTTTAAAATAAATTAAATGTTGTATTATTTTTGTCTTGTGGGTACCAGCCGATGAACATAAATTTAATGACATATGTTTTTTTATACTTTATTAATTTTAAAATAAATTAAATGTTGTATTATTTTTGTCTTGTGGGTACCAGCCGATGAACATATTTTTTCAAGAGGAGTGTTAAAACATTTTTGTTTCAACACTGTCTCTAACACTTATTTTTTATTGGATAAAATTTATATAATTTCAACTATTTTATATGTAACATATTTTTAATGCGTAGAACCTATATTGATATCATATAATAAAAGAGTGAGTGTTAGAGATAGAATGTTTTTATCACTCCTATTTTTTAATGGTACCAAAGAATTCACCTTGATTAAAATCACCTCATCAAGATATACACATCTTCTTTATTAAAAGATTAAACAAATACATGATTACATTGGTTTCCAGATTATTTTAAAATGCGTTTCGTGCATGCGCAATTATATAGATTAAATAATTATGTTTATATGAAGCAATTAGCAATTACCATAGGTTAGGTACATGGGCATTATATGCAATGTGCTAGCTTCACAAAAAAGTAAAATTTAGATACATGAAATGAAATTCTTTTCTCTTTGTCTTTCGTCAGGATCAATGAAAACAAACGTGTTCTAGCTTGCTTTTTGAGATGCTATAAAAGCACACGGCTGTATAAGCTTTAAAAAAAGTCGATTTTTTATACTTTTATATGCTTGAAAATCGGATCCACACTTCTCTTCATTTGCTAATCTTGAGAATGATTACGGACTCCTTCCGTCCCAAAATATAAGCAAAAATTGGTCAACGAAAGTTAATGTATTTGGTACAAATTTTTAACCAGATACATTAACTTTTGTTGACCAATTTTTACTTATATTTTGGGACGGAGGGAGTATATGTTACATTCTTGTTTAGGTAAAAGTATATGTTACCAAAAAAAGGAAAAAGTGAAGAAATATGTCTAATAGAAATACATTACGAACACTATCTTTTCAATATTTGTTTTTCATTCACTTTTTTATTAGGTAAATTAAAACTCATATGAGACTCAATACTTTATTTGAAATCTATTTTAAAGTGTGATATTCATGTTGATTTTATCCAATAAAAGAGTGAATATTAGAGATTGTTGTAGCACTAATCCTATGTTGTTCGGAAATCTAAAAGCCATACTTGGTGTAAGTGTGATTTTATTTTGCACTTAGCTTTCTTTATTCTTCTGCTTTTTAAATTTCTGAACGAAATAATTTATGGTGAAGACTATAAAATCATGTAATCCTTTAAAAAAACGTATATAATATAAAATACAAAAGTTTCTAGATAAATATATTATTTTTAATATATTATACTATGCAAATTTGCACATAATAAAAAATTGCAATATTTATTTCCATCAATAATGTTAAGAGAATGCTGGTCGGTTTTTAGATGTACAGGAACGTGAAGGGACAAACTATTCTTGCACCAACACTGGAAGAAAACAAGGCACAATTCAATCATCTTCCAATCTGCTCCAGTTGTTCACCCCAAAGGTAAATTTTATCAAATGGTGCATTTTTATTCAAAAAATCAAATGGTGCATTTAATATATATGCATGTTTAGAAAAAGTCTAAATATGAACATTTTTTACAATTTCTAGTAAACTTCAATGAAATATTGAGTGCATCTAATATGAACTTCCAAAAAGTTGGTGAACTCTTACTTTTTAAAGTAAATATCAAAATTTTCTTCATTTTTTTTTATTAAAAACGTTAAAAGTCCACCTTTAAATCTTTTTTGGATGGTTCATATTAGGCAAATCCTAAAACATTATATCTCTTCTTCTTTTATTATTATAAAATTTACTATTTTACCAAAACTAATAATAGTTAATCTCTATACCGTTTTTTTATTGGACAAGCCTTTTACTTTGCTTAACTTTTGAGATTATATATTTAAACAAAAGAATTAAAAAAAATCCGAAGTACAACTGTATGTTAACCTACTACATATATAGCATGTGAGTGTATACATCTTTAAACTAAGAAAAAAAAATAGTGATATGATAGGTATGATAGTTTGATGATGTCATAGAGAAAATAAGGTGTTGATAAATAAAAAAATAAAAAATAGAATGTCCAACTATCATTGTTGAATAAATAGGAACCTCACAAATTTTTTCAAAGGTAAACACTTACTATTTTTGGTACAAAATTGAATTTTATTAGGATAAAAAAAGAGAAATAAATGTAATTAATATTCTATTAAATTAGTAAGGGTCCACCTTTAAAATAATTTTAGATCTCTATATTAGATGCATCCCTCTTTCCTAAAATAAAAAGATGCATCCATGTTAGACCTCTTCTTTGGGATGCCTTCATGATCTACCAAAAAAAAAAAAAAAACGAAAGACAATTATTTTGAAAATAGACAATTAATAATCAAATCTATAATACATATCCAAACTATATCAGAGACTTTGGTTTTCTCCCAATCTAAATAACTTTACTACTTTATAATGAAATATAAGTAAAAATGATAGTTGAAAAGTTGATGTATGTGGTTAAAAATGAAATTCACATACCTAAATTTTTCAATTATCCTTTTTATTTTTATTTCATTTTAGAGGGTTTGAAGATTTGCCTATATTAGTCCATTTCTTTGATTGATTTTCATTTCTGGTTTCTTAGTTCATCAATCTTTTTTTCTTTAGGAGCTAATAATCATTACATGCACAAATAATGAAACATTTTTTTTTTATAACATTATGATTATTAACTTCTTTCACATCCTTTCATTTCCCTTCAGATCGAGGAATATCAATCAAGAACTTCAACCTTTACACAACAAAAGACTTTCACAAGCAAGTGA

Protein sequence

>MS.gene019167.t1

MKNNNSKRSGVRKYHKSKQPRLRWTPELHQYFVQTVESLGGKDKASPKHILNMMQVKGLRISHIKSHLQEREGTNYSCTNTGRKQGTIQSSSNLLQLFTPKIEEYQSRTSTFTQQKTFTSK