AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019170.t1 MTR_3g450500 82.067 329 54 1 3 326 47 375 0.0 532
MS.gene019170.t1 MTR_4g007490 70.154 325 91 2 7 326 50 373 4.48e-160 452
MS.gene019170.t1 MTR_2g019840 37.540 309 185 5 14 321 68 369 3.61e-62 202
MS.gene019170.t1 MTR_2g019810 37.705 305 182 5 18 321 60 357 8.01e-61 198
MS.gene019170.t1 MTR_2g437040 37.124 299 182 3 23 321 76 368 1.42e-60 198
MS.gene019170.t1 MTR_2g436460 36.789 299 182 3 23 320 81 373 7.80e-60 196
MS.gene019170.t1 MTR_4g119550 35.430 302 184 4 23 321 85 378 5.62e-59 194
MS.gene019170.t1 MTR_2g437260 32.353 306 199 2 17 320 64 363 3.79e-54 182
MS.gene019170.t1 MTR_2g436400 33.654 312 199 3 11 321 71 375 9.14e-54 181
MS.gene019170.t1 MTR_2g437030 34.884 301 190 4 23 323 162 456 2.24e-53 182
MS.gene019170.t1 MTR_2g437160 33.443 305 195 3 19 321 95 393 9.08e-53 179
MS.gene019170.t1 MTR_2g437080 33.861 316 191 4 14 323 67 370 5.53e-52 176
MS.gene019170.t1 MTR_2g437020 35.417 288 180 3 17 303 69 351 2.75e-51 174
MS.gene019170.t1 MTR_2g437100 32.680 306 201 3 23 326 96 398 4.74e-51 174
MS.gene019170.t1 MTR_4g119580 33.333 312 202 2 14 325 69 374 7.84e-51 173
MS.gene019170.t1 MTR_4g120380 31.290 310 205 3 14 322 69 371 8.36e-51 172
MS.gene019170.t1 MTR_2g437960 31.894 301 196 3 23 320 89 383 1.82e-50 172
MS.gene019170.t1 MTR_2g437960 31.894 301 196 3 23 320 89 383 2.33e-50 173
MS.gene019170.t1 MTR_2g437120 33.007 306 195 4 19 321 83 381 4.06e-50 172
MS.gene019170.t1 MTR_2g437180 32.353 306 198 4 17 320 79 377 1.17e-49 170
MS.gene019170.t1 MTR_2g437060 34.098 305 195 3 17 321 85 383 2.80e-48 167
MS.gene019170.t1 MTR_2g437240 29.377 337 194 4 23 321 66 396 3.61e-48 167
MS.gene019170.t1 MTR_2g436440 31.438 299 199 2 23 321 82 374 1.29e-47 165
MS.gene019170.t1 MTR_2g437150 32.558 301 198 3 23 321 91 388 1.64e-47 165
MS.gene019170.t1 MTR_4g120380 31.142 289 191 3 14 301 69 350 1.63e-46 162
MS.gene019170.t1 MTR_2g076320 32.215 298 199 2 23 320 86 380 2.11e-46 162
MS.gene019170.t1 MTR_2g437170 31.561 301 201 3 23 321 91 388 1.29e-45 160
MS.gene019170.t1 MTR_2g438010 31.126 302 205 3 19 320 102 400 1.52e-45 160
MS.gene019170.t1 MTR_2g437990 31.457 302 203 2 19 320 82 379 2.51e-45 159
MS.gene019170.t1 MTR_2g437200 29.825 342 198 6 17 321 60 396 5.25e-45 158
MS.gene019170.t1 MTR_8g081000 29.412 306 213 1 18 323 85 387 3.45e-43 153
MS.gene019170.t1 MTR_8g081000 29.412 306 213 1 18 323 85 387 3.54e-43 153
MS.gene019170.t1 MTR_8g081000 29.412 306 213 1 18 323 85 387 5.32e-43 153
MS.gene019170.t1 MTR_2g437130 30.195 308 209 2 14 321 68 369 7.67e-42 149
MS.gene019170.t1 MTR_2g438020 27.778 342 205 5 17 321 99 435 1.04e-40 149
MS.gene019170.t1 MTR_8g080990 29.221 308 215 1 19 326 73 377 4.45e-40 144
MS.gene019170.t1 MTR_2g437940 27.723 303 188 3 19 321 81 352 1.95e-33 127
MS.gene019170.t1 MTR_2g437090 33.553 152 101 0 170 321 5 156 1.35e-26 103
MS.gene019170.t1 MTR_2g437160 30.348 201 126 3 135 321 102 302 5.64e-24 100
MS.gene019170.t1 MTR_4g119570 27.165 254 146 3 70 323 17 231 1.10e-23 97.4
MS.gene019170.t1 MTR_2g436370 44.565 92 51 0 24 115 83 174 5.66e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019170.t1 AT5G07900 39.216 306 184 2 18 322 97 401 1.61e-79 248
MS.gene019170.t1 AT1G21150 35.880 301 187 4 23 320 53 350 1.33e-58 192
MS.gene019170.t1 AT1G21150 35.880 301 187 4 23 320 89 386 4.34e-58 192
MS.gene019170.t1 AT1G21150 35.880 301 187 4 23 320 153 450 2.01e-57 192
MS.gene019170.t1 AT1G62010 30.275 327 173 6 23 307 71 384 2.50e-38 140
MS.gene019170.t1 AT1G62120 32.432 333 170 8 18 306 84 405 1.80e-37 139
MS.gene019170.t1 AT1G61970 30.631 333 178 8 17 307 79 400 2.03e-37 138
MS.gene019170.t1 AT1G61970 30.631 333 178 8 17 307 79 400 2.03e-37 138
MS.gene019170.t1 AT1G61970 30.631 333 178 8 17 307 79 400 2.03e-37 138
MS.gene019170.t1 AT1G61970 30.631 333 178 8 17 307 79 400 2.03e-37 138
MS.gene019170.t1 AT1G61970 30.631 333 178 8 17 307 79 400 2.03e-37 138
MS.gene019170.t1 AT1G61970 30.631 333 178 8 17 307 79 400 2.03e-37 138
MS.gene019170.t1 AT1G61970 30.631 333 178 8 17 307 79 400 2.03e-37 138
MS.gene019170.t1 AT1G61980 31.498 327 180 6 16 306 81 399 3.93e-37 137
MS.gene019170.t1 AT1G61980 31.498 327 180 6 16 306 81 399 3.93e-37 137
MS.gene019170.t1 AT1G61980 31.498 327 180 6 16 306 81 399 3.93e-37 137
MS.gene019170.t1 AT5G23930 28.609 381 187 7 15 324 83 449 6.52e-33 127
MS.gene019170.t1 AT1G62150 27.807 374 192 10 17 317 85 453 2.02e-32 125
MS.gene019170.t1 AT1G61990 27.586 348 196 8 18 325 83 414 1.10e-31 123
MS.gene019170.t1 AT1G61990 27.586 348 196 8 18 325 83 414 1.10e-31 123
MS.gene019170.t1 AT5G64950 27.077 325 226 4 8 321 52 376 1.49e-30 119
MS.gene019170.t1 AT3G46950 31.818 264 161 6 10 268 75 324 1.71e-30 120
MS.gene019170.t1 AT1G62085 31.707 246 159 5 10 254 78 315 3.32e-28 114
MS.gene019170.t1 AT1G62085 31.707 246 159 5 10 254 78 315 3.32e-28 114
MS.gene019170.t1 AT1G61960 34.052 232 144 5 12 242 77 300 1.09e-27 112
MS.gene019170.t1 AT1G61960 31.200 125 83 1 204 325 332 456 3.00e-13 70.5
MS.gene019170.t1 AT1G62110 30.189 265 170 7 10 268 75 330 3.41e-25 105
MS.gene019170.t1 AT1G56380 25.148 338 206 12 10 307 50 380 2.56e-20 91.3
MS.gene019170.t1 AT1G56380 25.148 338 206 12 10 307 39 369 2.68e-20 90.9
MS.gene019170.t1 AT1G62490 26.432 227 119 6 16 242 127 305 2.19e-11 64.3

Find 57 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAGTACCTTTATTATTA+TGG 0.157841 3.3:-37065111 MS.gene019170:CDS
GAAAGATTTACCATTGTTAT+TGG 0.167427 3.3:-37065048 MS.gene019170:CDS
TCTTTACATAGATACGTAAT+TGG 0.208101 3.3:+37065867 None:intergenic
AGTGTTCTTAATTAGTATTT+TGG 0.224598 3.3:+37065751 None:intergenic
GAAGTTGAATAACAGCATTT+TGG 0.226972 3.3:+37065915 None:intergenic
AACCATTGAATGATAGTTAA+AGG 0.250245 3.3:+37065616 None:intergenic
TTTACTCACCAAGTTGTTTC+AGG 0.256909 3.3:+37066168 None:intergenic
ATGCTGTTATTCAACTTCTA+AGG 0.272127 3.3:-37065910 MS.gene019170:CDS
TATGAAAACAATGAACTTCT+TGG 0.276128 3.3:-37065273 MS.gene019170:CDS
ATTCAACTTCTAAGGAACTA+TGG 0.305786 3.3:-37065902 MS.gene019170:CDS
GAACGCTACATTGGGAAAAT+TGG 0.307287 3.3:+37065520 None:intergenic
ACCAAGTTGTTTCAGGTTGC+AGG 0.308076 3.3:+37066175 None:intergenic
ATGGTAAATCTTTCTGAAAT+GGG 0.308277 3.3:+37065057 None:intergenic
AATGGTAAATCTTTCTGAAA+TGG 0.311445 3.3:+37065056 None:intergenic
GTCGAGAGATATGTGTCTTT+TGG 0.315308 3.3:-37065342 MS.gene019170:CDS
TTTCTCAGCCATAATAATAA+AGG 0.344392 3.3:+37065103 None:intergenic
CAAAGATGGACAAAGAGAAT+TGG 0.346933 3.3:-37065400 MS.gene019170:CDS
TTGTTATTGGATGCATATAA+AGG 0.358352 3.3:-37065035 MS.gene019170:CDS
ATCTTAATAACTGCACATCT+AGG 0.371337 3.3:+37065170 None:intergenic
GTTAATTCAGTCAAGGAAAT+GGG 0.373577 3.3:-37065470 MS.gene019170:CDS
TCTGAAATCATCATACAATT+CGG 0.401154 3.3:+37065305 None:intergenic
TCAATGTTCCATTTCTCTAC+TGG 0.408911 3.3:-37065546 MS.gene019170:CDS
TGTTAATTCAGTCAAGGAAA+TGG 0.429636 3.3:-37065471 MS.gene019170:CDS
CTTTACATAGATACGTAATT+GGG 0.430873 3.3:+37065868 None:intergenic
GACCTTTAACTATCATTCAA+TGG 0.434376 3.3:-37065618 MS.gene019170:CDS
ATTGGATACCAGTAGAGAAA+TGG 0.437001 3.3:+37065538 None:intergenic
TGCTTGGCGAACGCTACATT+GGG 0.443987 3.3:+37065512 None:intergenic
CAACTTTGATGCGTGGAACA+TGG 0.454740 3.3:-37065640 MS.gene019170:CDS
TGCTATTCTGATCCGTAGCT+TGG 0.455085 3.3:-37065207 MS.gene019170:CDS
AAAGATGGACAAAGAGAATT+GGG 0.462885 3.3:-37065399 MS.gene019170:CDS
CTCAACAAATCTAGAATGCT+TGG 0.472071 3.3:+37065496 None:intergenic
ATGCTTGGCGAACGCTACAT+TGG 0.474402 3.3:+37065511 None:intergenic
AAAATTGAGTTTAGGCAAAA+GGG 0.475271 3.3:+37065808 None:intergenic
ATCTATTATCCCTCGCTATG+AGG 0.491302 3.3:-37065702 MS.gene019170:CDS
AAGCTACGGATCAGAATAGC+AGG 0.501991 3.3:+37065209 None:intergenic
CTTAGTTCGCAATGATAAAG+AGG 0.502291 3.3:-37065669 MS.gene019170:CDS
TCCTGCAACCTGAAACAACT+TGG 0.514164 3.3:-37066176 MS.gene019170:intron
TCTTAATAACTGCACATCTA+GGG 0.530762 3.3:+37065171 None:intergenic
CTTACACCACAAGACATTGT+AGG 0.539834 3.3:-37065236 MS.gene019170:CDS
TCATTCTGTTGCAAACATTG+AGG 0.540275 3.3:-37065591 MS.gene019170:CDS
CAAGCATTCTAGATTTGTTG+AGG 0.550123 3.3:-37065495 MS.gene019170:CDS
TAAGTATCTTCTCCAAGCTA+CGG 0.568984 3.3:+37065195 None:intergenic
ACTTCAAGTAATCGCAAAGA+TGG 0.569887 3.3:-37065414 MS.gene019170:CDS
TGAGGCTGTTAATTCAGTCA+AGG 0.573328 3.3:-37065477 MS.gene019170:CDS
TGGTAAATCTTTCTGAAATG+GGG 0.580242 3.3:+37065058 None:intergenic
TTCTAATGACCTCATAGCGA+GGG 0.596584 3.3:+37065693 None:intergenic
TTAATTCAGTCAAGGAAATG+GGG 0.604956 3.3:-37065469 MS.gene019170:CDS
AACTTCTTGGTGAACGATGT+GGG 0.606341 3.3:-37065260 MS.gene019170:CDS
AAAACAAAATAAGACATCAA+AGG 0.606684 3.3:+37065440 None:intergenic
ATCAGTGGTTGAAACCCCAA+TGG 0.618102 3.3:+37065778 None:intergenic
GTAGTTTCAACTTTGATGCG+TGG 0.626795 3.3:-37065647 MS.gene019170:CDS
GAACTTCTTGGTGAACGATG+TGG 0.641423 3.3:-37065261 MS.gene019170:CDS
GGGCATCCTACAATGTCTTG+TGG 0.642181 3.3:+37065230 None:intergenic
TTATATGCATCCAATAACAA+TGG 0.650321 3.3:+37065038 None:intergenic
CTTCTAATGACCTCATAGCG+AGG 0.650510 3.3:+37065692 None:intergenic
AGTAGAGAAATGGAACATTG+AGG 0.673786 3.3:+37065548 None:intergenic
AGCTACGGATCAGAATAGCA+GGG 0.695511 3.3:+37065210 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAAATAAGACATCAA+AGG + chr3.3:37065774-37065793 None:intergenic 20.0%
!! AAATAGAACACAAAATTGAA+GGG + chr3.3:37065130-37065149 None:intergenic 20.0%
!! CATAAGTACCTTTATTATTA+TGG - chr3.3:37066100-37066119 MS.gene019170:intron 20.0%
!! TGAATCTAGTAATAAGAAAA+TGG + chr3.3:37065095-37065114 None:intergenic 20.0%
!!! AGTGTTCTTAATTAGTATTT+TGG + chr3.3:37065463-37065482 None:intergenic 20.0%
!!! GTGTTCTTAATTAGTATTTT+GGG + chr3.3:37065462-37065481 None:intergenic 20.0%
!!! TAATTTTTTGTTATCAAGCT+TGG - chr3.3:37065482-37065501 MS.gene019170:CDS 20.0%
!!! TATTAAGATTTTGAAGTCAA+GGG - chr3.3:37066055-37066074 MS.gene019170:intron 20.0%
!!! TTATTAAGATTTTGAAGTCA+AGG - chr3.3:37066054-37066073 MS.gene019170:intron 20.0%
!!! TTTGATGTCTTATTTTGTTT+TGG - chr3.3:37065773-37065792 MS.gene019170:CDS 20.0%
! AAAAAACACATGAATTAACG+AGG + chr3.3:37065221-37065240 None:intergenic 25.0%
! AAAAATTGAGTTTAGGCAAA+AGG + chr3.3:37065407-37065426 None:intergenic 25.0%
! AAAATTGAGTTTAGGCAAAA+GGG + chr3.3:37065406-37065425 None:intergenic 25.0%
! AAAGAACGAGAAAAATCATT+GGG + chr3.3:37065153-37065172 None:intergenic 25.0%
! AACCATTGAATGATAGTTAA+AGG + chr3.3:37065598-37065617 None:intergenic 25.0%
! CTTTACATAGATACGTAATT+GGG + chr3.3:37065346-37065365 None:intergenic 25.0%
! GAAAGATTTACCATTGTTAT+TGG - chr3.3:37066163-37066182 MS.gene019170:intron 25.0%
! GAAATAGAACACAAAATTGA+AGG + chr3.3:37065131-37065150 None:intergenic 25.0%
! GATTGCAAAAAATTGAGTTT+AGG + chr3.3:37065414-37065433 None:intergenic 25.0%
! GTAATAAGAAAATGGTACAT+TGG + chr3.3:37065087-37065106 None:intergenic 25.0%
! TATGAAAACAATGAACTTCT+TGG - chr3.3:37065938-37065957 MS.gene019170:CDS 25.0%
! TCTTTACATAGATACGTAAT+TGG + chr3.3:37065347-37065366 None:intergenic 25.0%
! TTATATGCATCCAATAACAA+TGG + chr3.3:37066176-37066195 None:intergenic 25.0%
! TTTCTCAGCCATAATAATAA+AGG + chr3.3:37066111-37066130 None:intergenic 25.0%
!! AAGTTGAATAACAGCATTTT+GGG + chr3.3:37065298-37065317 None:intergenic 25.0%
!! AATGGTAAATCTTTCTGAAA+TGG + chr3.3:37066158-37066177 None:intergenic 25.0%
!! TCTGAAATCATCATACAATT+CGG + chr3.3:37065909-37065928 None:intergenic 25.0%
!! TTGTTATTGGATGCATATAA+AGG - chr3.3:37066176-37066195 MS.gene019170:intron 25.0%
!!! ATGGTAAATCTTTCTGAAAT+GGG + chr3.3:37066157-37066176 None:intergenic 25.0%
!!! ATTAAGATTTTGAAGTCAAG+GGG - chr3.3:37066056-37066075 MS.gene019170:intron 25.0%
!!! CAAAAATCAAGATTTTTGAG+AGG - chr3.3:37065838-37065857 MS.gene019170:CDS 25.0%
!!! GTTTTGAAAAAAGTACAGAA+GGG + chr3.3:37065374-37065393 None:intergenic 25.0%
!!! TCAATTTTTTGCAATCCATT+GGG - chr3.3:37065418-37065437 MS.gene019170:CDS 25.0%
AAAGATGGACAAAGAGAATT+GGG - chr3.3:37065812-37065831 MS.gene019170:CDS 30.0%
ATCTTAATAACTGCACATCT+AGG + chr3.3:37066044-37066063 None:intergenic 30.0%
ATGCTGTTATTCAACTTCTA+AGG - chr3.3:37065301-37065320 MS.gene019170:CDS 30.0%
GAAAGAACGAGAAAAATCAT+TGG + chr3.3:37065154-37065173 None:intergenic 30.0%
GACCTTTAACTATCATTCAA+TGG - chr3.3:37065593-37065612 MS.gene019170:CDS 30.0%
GTTAATTCAGTCAAGGAAAT+GGG - chr3.3:37065741-37065760 MS.gene019170:CDS 30.0%
TCTTAATAACTGCACATCTA+GGG + chr3.3:37066043-37066062 None:intergenic 30.0%
TGTTAATTCAGTCAAGGAAA+TGG - chr3.3:37065740-37065759 MS.gene019170:CDS 30.0%
TTAATTCAGTCAAGGAAATG+GGG - chr3.3:37065742-37065761 MS.gene019170:CDS 30.0%
! ATTCAACTTCTAAGGAACTA+TGG - chr3.3:37065309-37065328 MS.gene019170:CDS 30.0%
! GAAGTTGAATAACAGCATTT+TGG + chr3.3:37065299-37065318 None:intergenic 30.0%
! TATGGCTGAGAAAACATTTT+TGG - chr3.3:37066118-37066137 MS.gene019170:intron 30.0%
!! AAATCAAGATTTTTGAGAGG+TGG - chr3.3:37065841-37065860 MS.gene019170:CDS 30.0%
!! AATCAAGATTTTTGAGAGGT+GGG - chr3.3:37065842-37065861 MS.gene019170:CDS 30.0%
!! TGGTAAATCTTTCTGAAATG+GGG + chr3.3:37066156-37066175 None:intergenic 30.0%
!!! ATTGAGGTTTTGAGAAAACT+TGG - chr3.3:37065636-37065655 MS.gene019170:CDS 30.0%
!!! CAATTTTTTGCAATCCATTG+GGG - chr3.3:37065419-37065438 MS.gene019170:CDS 30.0%
!!! CTCAATTTTTTGCAATCCAT+TGG - chr3.3:37065417-37065436 MS.gene019170:CDS 30.0%
!!! GGTTTTGAAAAAAGTACAGA+AGG + chr3.3:37065375-37065394 None:intergenic 30.0%
ACTTCAAGTAATCGCAAAGA+TGG - chr3.3:37065797-37065816 MS.gene019170:CDS 35.0%
AGTAGAGAAATGGAACATTG+AGG + chr3.3:37065666-37065685 None:intergenic 35.0%
ATTGGATACCAGTAGAGAAA+TGG + chr3.3:37065676-37065695 None:intergenic 35.0%
CAAAGATGGACAAAGAGAAT+TGG - chr3.3:37065811-37065830 MS.gene019170:CDS 35.0%
CAACCTGTTGAAGAGTTTAA+GGG + chr3.3:37065256-37065275 None:intergenic 35.0%
CTTAGTTCGCAATGATAAAG+AGG - chr3.3:37065542-37065561 MS.gene019170:CDS 35.0%
TAAGTATCTTCTCCAAGCTA+CGG + chr3.3:37066019-37066038 None:intergenic 35.0%
TCAACCTGTTGAAGAGTTTA+AGG + chr3.3:37065257-37065276 None:intergenic 35.0%
TCAATGTTCCATTTCTCTAC+TGG - chr3.3:37065665-37065684 MS.gene019170:CDS 35.0%
TCATTCTGTTGCAAACATTG+AGG - chr3.3:37065620-37065639 MS.gene019170:CDS 35.0%
TCTGTTGGAAACCATCATAA+AGG - chr3.3:37065174-37065193 MS.gene019170:CDS 35.0%
! AAGAGTTTAAGGGTTGTTTC+AGG + chr3.3:37065246-37065265 None:intergenic 35.0%
! AGAGTTTAAGGGTTGTTTCA+GGG + chr3.3:37065245-37065264 None:intergenic 35.0%
! ATAACAGCATTTTGGGCATT+AGG + chr3.3:37065291-37065310 None:intergenic 35.0%
! CTCAACAAATCTAGAATGCT+TGG + chr3.3:37065718-37065737 None:intergenic 35.0%
! TAACAGCATTTTGGGCATTA+GGG + chr3.3:37065290-37065309 None:intergenic 35.0%
! TTTACTCACCAAGTTGTTTC+AGG + chr3.3:37065046-37065065 None:intergenic 35.0%
! TTTTCTCGTTCTTTCTCTGT+TGG - chr3.3:37065159-37065178 MS.gene019170:CDS 35.0%
!! ATCAAGATTTTTGAGAGGTG+GGG - chr3.3:37065843-37065862 MS.gene019170:CDS 35.0%
!! CAAGCATTCTAGATTTGTTG+AGG - chr3.3:37065716-37065735 MS.gene019170:CDS 35.0%
!! TAAAGGTGTCACCTTTATGA+TGG + chr3.3:37065188-37065207 None:intergenic 35.0%
!! TAGTATTTTGGGAAGATCAG+TGG + chr3.3:37065451-37065470 None:intergenic 35.0%
!! TCATACAATTCGGCTGTTTT+TGG + chr3.3:37065899-37065918 None:intergenic 35.0%
AACGAGGTTTGACACTGTAA+AGG + chr3.3:37065205-37065224 None:intergenic 40.0%
AACTTCTTGGTGAACGATGT+GGG - chr3.3:37065951-37065970 MS.gene019170:intron 40.0%
ATCTATTATCCCTCGCTATG+AGG - chr3.3:37065509-37065528 MS.gene019170:CDS 40.0%
CAACCCTTAAACTCTTCAAC+AGG - chr3.3:37065250-37065269 MS.gene019170:CDS 40.0%
CTTACACCACAAGACATTGT+AGG - chr3.3:37065975-37065994 MS.gene019170:intron 40.0%
GAACGCTACATTGGGAAAAT+TGG + chr3.3:37065694-37065713 None:intergenic 40.0%
GTAGTTTCAACTTTGATGCG+TGG - chr3.3:37065564-37065583 MS.gene019170:CDS 40.0%
TGAGGCTGTTAATTCAGTCA+AGG - chr3.3:37065734-37065753 MS.gene019170:CDS 40.0%
TTCTAATGACCTCATAGCGA+GGG + chr3.3:37065521-37065540 None:intergenic 40.0%
! GAGTTTAAGGGTTGTTTCAG+GGG + chr3.3:37065244-37065263 None:intergenic 40.0%
! GTCGAGAGATATGTGTCTTT+TGG - chr3.3:37065869-37065888 MS.gene019170:CDS 40.0%
! TTAGGCAAAAGGGTCTTTTC+AGG + chr3.3:37065396-37065415 None:intergenic 40.0%
AAGCTACGGATCAGAATAGC+AGG + chr3.3:37066005-37066024 None:intergenic 45.0%
AGCTACGGATCAGAATAGCA+GGG + chr3.3:37066004-37066023 None:intergenic 45.0%
ATCAGTGGTTGAAACCCCAA+TGG + chr3.3:37065436-37065455 None:intergenic 45.0%
CAACTTTGATGCGTGGAACA+TGG - chr3.3:37065571-37065590 MS.gene019170:CDS 45.0%
CTTCTAATGACCTCATAGCG+AGG + chr3.3:37065522-37065541 None:intergenic 45.0%
GAACTTCTTGGTGAACGATG+TGG - chr3.3:37065950-37065969 MS.gene019170:intron 45.0%
TCCTGCAACCTGAAACAACT+TGG - chr3.3:37065035-37065054 MS.gene019170:CDS 45.0%
TGCTATTCTGATCCGTAGCT+TGG - chr3.3:37066004-37066023 MS.gene019170:intron 45.0%
!! ACCAAGTTGTTTCAGGTTGC+AGG + chr3.3:37065039-37065058 None:intergenic 45.0%
!! AGATTTTTGAGAGGTGGGGT+TGG - chr3.3:37065847-37065866 MS.gene019170:CDS 45.0%
ATGCTTGGCGAACGCTACAT+TGG + chr3.3:37065703-37065722 None:intergenic 50.0%
GGGCATCCTACAATGTCTTG+TGG + chr3.3:37065984-37066003 None:intergenic 50.0%
TGCTTGGCGAACGCTACATT+GGG + chr3.3:37065702-37065721 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 37065019 37066214 37065019 ID=MS.gene019170
chr3.3 mRNA 37065019 37066214 37065019 ID=MS.gene019170.t1;Parent=MS.gene019170
chr3.3 exon 37066177 37066214 37066177 ID=MS.gene019170.t1.exon1;Parent=MS.gene019170.t1
chr3.3 CDS 37066177 37066214 37066177 ID=cds.MS.gene019170.t1;Parent=MS.gene019170.t1
chr3.3 exon 37065019 37065961 37065019 ID=MS.gene019170.t1.exon2;Parent=MS.gene019170.t1
chr3.3 CDS 37065019 37065961 37065019 ID=cds.MS.gene019170.t1;Parent=MS.gene019170.t1
Gene Sequence

>MS.gene019170

ATGGAATCGAGCATAATCCTGCAACCTGAAACAACTTGGTGAGTAAATCATTCATTCATTCATTACCAATGTACCATTTTCTTATTACTAGATTCACTCATCATAGAACCCTTCAATTTTGTGTTCTATTTCCCAATGATTTTTCTCGTTCTTTCTCTGTTGGAAACCATCATAAAGGTGACACCTTTACAGTGTCAAACCTCGTTAATTCATGTGTTTTTTCCCCTGAAACAACCCTTAAACTCTTCAACAGGTTGAAACGCAAAAACCCTAATGCCCAAAATGCTGTTATTCAACTTCTAAGGAACTATGGTTTCTCTGATTCCCAATTACGTATCTATGTAAAGAAACACCCTTCTGTACTTTTTTCAAAACCTGAAAAGACCCTTTTGCCTAAACTCAATTTTTTGCAATCCATTGGGGTTTCAACCACTGATCTTCCCAAAATACTAATTAAGAACACTAATTTTTTGTTATCAAGCTTGGAGAAATCTATTATCCCTCGCTATGAGGTCATTAGAAGCTTAGTTCGCAATGATAAAGAGGTAGTTTCAACTTTGATGCGTGGAACATGGACCTTTAACTATCATTCAATGGTTAATCATTCTGTTGCAAACATTGAGGTTTTGAGAAAACTTGGTGTGCCTCAATGTTCCATTTCTCTACTGGTATCCAATTTTCCCAATGTAGCGTTCGCCAAGCATTCTAGATTTGTTGAGGCTGTTAATTCAGTCAAGGAAATGGGGTTTGATCCTTTGATGTCTTATTTTGTTTTGGCACTTCAAGTAATCGCAAAGATGGACAAAGAGAATTGGGAATCAAAAATCAAGATTTTTGAGAGGTGGGGTTGGTCGAGAGATATGTGTCTTTTGGCTTTCCAAAAACAGCCGAATTGTATGATGATTTCAGAAAAAAAGATTATGAAAACAATGAACTTCTTGGTGAACGATGTGGGTCTTACACCACAAGACATTGTAGGATGCCCTGCTATTCTGATCCGTAGCTTGGAGAAGATACTTATCCCTAGATGTGCAGTTATTAAGATTTTGAAGTCAAGGGGTTTGATAAAGAGTAGTTTGCGCATAAGTACCTTTATTATTATGGCTGAGAAAACATTTTTGGAGCGATATGTAACCCCATTTCAGAAAGATTTACCATTGTTATTGGATGCATATAAAGGTCAGAATTCAGATTGA
Protein sequence

>MS.gene019170.t1

MESSIILQPETTWLKRKNPNAQNAVIQLLRNYGFSDSQLRIYVKKHPSVLFSKPEKTLLPKLNFLQSIGVSTTDLPKILIKNTNFLLSSLEKSIIPRYEVIRSLVRNDKEVVSTLMRGTWTFNYHSMVNHSVANIEVLRKLGVPQCSISLLVSNFPNVAFAKHSRFVEAVNSVKEMGFDPLMSYFVLALQVIAKMDKENWESKIKIFERWGWSRDMCLLAFQKQPNCMMISEKKIMKTMNFLVNDVGLTPQDIVGCPAILIRSLEKILIPRCAVIKILKSRGLIKSSLRISTFIIMAEKTFLERYVTPFQKDLPLLLDAYKGQNSD