AlfalfaGEDB | MS.gene019170

M. sativa cultivar XinJiangDaYe / MS.gene019170

KEGG: K15032
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02536.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019170.t1	KEH33670.1	81.8	329	55	1	3	326	47	375	1.70E-106	396

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019170.t1	A0A072V670	81.8	329	55	1	3	326	47	375	1.2e-106	396.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene019170.t1	TR	mTERF

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019170.t1	MTR_3g450500	82.067	329	54	1	3	326	47	375	0.0	532
MS.gene019170.t1	MTR_4g007490	70.154	325	91	2	7	326	50	373	4.48e-160	452
MS.gene019170.t1	MTR_2g019840	37.540	309	185	5	14	321	68	369	3.61e-62	202
MS.gene019170.t1	MTR_2g019810	37.705	305	182	5	18	321	60	357	8.01e-61	198
MS.gene019170.t1	MTR_2g437040	37.124	299	182	3	23	321	76	368	1.42e-60	198
MS.gene019170.t1	MTR_2g436460	36.789	299	182	3	23	320	81	373	7.80e-60	196
MS.gene019170.t1	MTR_4g119550	35.430	302	184	4	23	321	85	378	5.62e-59	194
MS.gene019170.t1	MTR_2g437260	32.353	306	199	2	17	320	64	363	3.79e-54	182
MS.gene019170.t1	MTR_2g436400	33.654	312	199	3	11	321	71	375	9.14e-54	181
MS.gene019170.t1	MTR_2g437030	34.884	301	190	4	23	323	162	456	2.24e-53	182

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019170.t1	AT5G07900	39.216	306	184	2	18	322	97	401	1.61e-79	248
MS.gene019170.t1	AT1G21150	35.880	301	187	4	23	320	53	350	1.33e-58	192
MS.gene019170.t1	AT1G21150	35.880	301	187	4	23	320	89	386	4.34e-58	192
MS.gene019170.t1	AT1G21150	35.880	301	187	4	23	320	153	450	2.01e-57	192
MS.gene019170.t1	AT1G62010	30.275	327	173	6	23	307	71	384	2.50e-38	140
MS.gene019170.t1	AT1G62120	32.432	333	170	8	18	306	84	405	1.80e-37	139
MS.gene019170.t1	AT1G61970	30.631	333	178	8	17	307	79	400	2.03e-37	138
MS.gene019170.t1	AT1G61970	30.631	333	178	8	17	307	79	400	2.03e-37	138
MS.gene019170.t1	AT1G61970	30.631	333	178	8	17	307	79	400	2.03e-37	138
MS.gene019170.t1	AT1G61970	30.631	333	178	8	17	307	79	400	2.03e-37	138

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 57 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAATAAGACATCAA+AGG	0.606684	3.3:+37065440	None:intergenic
AAAATTGAGTTTAGGCAAAA+GGG	0.475271	3.3:+37065808	None:intergenic
AAAGATGGACAAAGAGAATT+GGG	0.462885	3.3:-37065399	MS.gene019170:CDS
AACCATTGAATGATAGTTAA+AGG	0.250245	3.3:+37065616	None:intergenic
AACTTCTTGGTGAACGATGT+GGG	0.606341	3.3:-37065260	MS.gene019170:CDS
AAGCTACGGATCAGAATAGC+AGG	0.501991	3.3:+37065209	None:intergenic
AATGGTAAATCTTTCTGAAA+TGG	0.311445	3.3:+37065056	None:intergenic
ACCAAGTTGTTTCAGGTTGC+AGG	0.308076	3.3:+37066175	None:intergenic
ACTTCAAGTAATCGCAAAGA+TGG	0.569887	3.3:-37065414	MS.gene019170:CDS
AGCTACGGATCAGAATAGCA+GGG	0.695511	3.3:+37065210	None:intergenic

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATGGACAAAGAGAATT+GGG	-	chr3.3:37065812-37065831	MS.gene019170:CDS	30.0%
ATCTTAATAACTGCACATCT+AGG	+	chr3.3:37066044-37066063	None:intergenic	30.0%
ATGCTGTTATTCAACTTCTA+AGG	-	chr3.3:37065301-37065320	MS.gene019170:CDS	30.0%
GAAAGAACGAGAAAAATCAT+TGG	+	chr3.3:37065154-37065173	None:intergenic	30.0%
GACCTTTAACTATCATTCAA+TGG	-	chr3.3:37065593-37065612	MS.gene019170:CDS	30.0%
GTTAATTCAGTCAAGGAAAT+GGG	-	chr3.3:37065741-37065760	MS.gene019170:CDS	30.0%
TCTTAATAACTGCACATCTA+GGG	+	chr3.3:37066043-37066062	None:intergenic	30.0%
TGTTAATTCAGTCAAGGAAA+TGG	-	chr3.3:37065740-37065759	MS.gene019170:CDS	30.0%
TTAATTCAGTCAAGGAAATG+GGG	-	chr3.3:37065742-37065761	MS.gene019170:CDS	30.0%
ACTTCAAGTAATCGCAAAGA+TGG	-	chr3.3:37065797-37065816	MS.gene019170:CDS	35.0%

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	37065019	37066214	37065019	ID=MS.gene019170
chr3.3	mRNA	37065019	37066214	37065019	ID=MS.gene019170.t1;Parent=MS.gene019170
chr3.3	exon	37066177	37066214	37066177	ID=MS.gene019170.t1.exon1;Parent=MS.gene019170.t1
chr3.3	CDS	37066177	37066214	37066177	ID=cds.MS.gene019170.t1;Parent=MS.gene019170.t1
chr3.3	exon	37065019	37065961	37065019	ID=MS.gene019170.t1.exon2;Parent=MS.gene019170.t1
chr3.3	CDS	37065019	37065961	37065019	ID=cds.MS.gene019170.t1;Parent=MS.gene019170.t1

Gene Sequence

>MS.gene019170

ATGGAATCGAGCATAATCCTGCAACCTGAAACAACTTGGTGAGTAAATCATTCATTCATTCATTACCAATGTACCATTTTCTTATTACTAGATTCACTCATCATAGAACCCTTCAATTTTGTGTTCTATTTCCCAATGATTTTTCTCGTTCTTTCTCTGTTGGAAACCATCATAAAGGTGACACCTTTACAGTGTCAAACCTCGTTAATTCATGTGTTTTTTCCCCTGAAACAACCCTTAAACTCTTCAACAGGTTGAAACGCAAAAACCCTAATGCCCAAAATGCTGTTATTCAACTTCTAAGGAACTATGGTTTCTCTGATTCCCAATTACGTATCTATGTAAAGAAACACCCTTCTGTACTTTTTTCAAAACCTGAAAAGACCCTTTTGCCTAAACTCAATTTTTTGCAATCCATTGGGGTTTCAACCACTGATCTTCCCAAAATACTAATTAAGAACACTAATTTTTTGTTATCAAGCTTGGAGAAATCTATTATCCCTCGCTATGAGGTCATTAGAAGCTTAGTTCGCAATGATAAAGAGGTAGTTTCAACTTTGATGCGTGGAACATGGACCTTTAACTATCATTCAATGGTTAATCATTCTGTTGCAAACATTGAGGTTTTGAGAAAACTTGGTGTGCCTCAATGTTCCATTTCTCTACTGGTATCCAATTTTCCCAATGTAGCGTTCGCCAAGCATTCTAGATTTGTTGAGGCTGTTAATTCAGTCAAGGAAATGGGGTTTGATCCTTTGATGTCTTATTTTGTTTTGGCACTTCAAGTAATCGCAAAGATGGACAAAGAGAATTGGGAATCAAAAATCAAGATTTTTGAGAGGTGGGGTTGGTCGAGAGATATGTGTCTTTTGGCTTTCCAAAAACAGCCGAATTGTATGATGATTTCAGAAAAAAAGATTATGAAAACAATGAACTTCTTGGTGAACGATGTGGGTCTTACACCACAAGACATTGTAGGATGCCCTGCTATTCTGATCCGTAGCTTGGAGAAGATACTTATCCCTAGATGTGCAGTTATTAAGATTTTGAAGTCAAGGGGTTTGATAAAGAGTAGTTTGCGCATAAGTACCTTTATTATTATGGCTGAGAAAACATTTTTGGAGCGATATGTAACCCCATTTCAGAAAGATTTACCATTGTTATTGGATGCATATAAAGGTCAGAATTCAGATTGA

Protein sequence

>MS.gene019170.t1

MESSIILQPETTWLKRKNPNAQNAVIQLLRNYGFSDSQLRIYVKKHPSVLFSKPEKTLLPKLNFLQSIGVSTTDLPKILIKNTNFLLSSLEKSIIPRYEVIRSLVRNDKEVVSTLMRGTWTFNYHSMVNHSVANIEVLRKLGVPQCSISLLVSNFPNVAFAKHSRFVEAVNSVKEMGFDPLMSYFVLALQVIAKMDKENWESKIKIFERWGWSRDMCLLAFQKQPNCMMISEKKIMKTMNFLVNDVGLTPQDIVGCPAILIRSLEKILIPRCAVIKILKSRGLIKSSLRISTFIIMAEKTFLERYVTPFQKDLPLLLDAYKGQNSD