AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019228

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019228.t1 MTR_4g086835 84.861 251 27 1 144 383 160 410 7.88e-142 409
MS.gene019228.t1 MTR_4g086835 84.462 251 27 2 144 383 160 409 2.81e-139 403
MS.gene019228.t1 MTR_5g017980 55.396 139 57 3 244 380 190 325 9.71e-40 144
MS.gene019228.t1 MTR_5g017980 54.676 139 57 4 244 380 189 323 2.35e-37 137
MS.gene019228.t1 MTR_5g017980 54.676 139 57 4 244 380 190 324 2.40e-37 137
MS.gene019228.t1 MTR_4g113140 47.701 174 80 5 162 327 148 318 2.81e-35 134
MS.gene019228.t1 MTR_5g054300 59.596 99 37 1 246 341 197 295 1.49e-29 117
MS.gene019228.t1 MTR_1g093080 40.306 196 86 5 155 341 136 309 2.85e-29 117
MS.gene019228.t1 MTR_1g093080 41.958 143 66 2 155 297 136 261 3.09e-22 95.9
MS.gene019228.t1 MTR_7g089010 47.761 67 34 1 240 306 84 149 6.50e-14 72.0
MS.gene019228.t1 MTR_4g098870 32.479 117 78 1 190 306 253 368 7.53e-14 73.2
MS.gene019228.t1 MTR_4g098870 32.479 117 78 1 190 306 273 388 9.33e-14 73.2
MS.gene019228.t1 MTR_4g098870 32.479 117 78 1 190 306 292 407 1.50e-13 72.4
MS.gene019228.t1 MTR_4g098870 32.479 117 78 1 190 306 253 368 1.55e-13 72.4
MS.gene019228.t1 MTR_4g098870 31.667 120 81 1 187 306 270 388 1.72e-13 72.4
MS.gene019228.t1 MTR_5g014040 41.379 87 50 1 220 306 284 369 1.73e-13 72.0
MS.gene019228.t1 MTR_5g041350 41.667 84 48 1 244 326 12 95 3.63e-13 70.5
MS.gene019228.t1 MTR_1g053830 44.286 70 39 0 245 314 16 85 4.18e-13 65.5
MS.gene019228.t1 MTR_7g115530 61.111 54 21 0 247 300 218 271 4.29e-13 69.7
MS.gene019228.t1 MTR_1g080330 59.259 54 22 0 247 300 175 228 4.56e-13 69.3
MS.gene019228.t1 MTR_7g115530 61.111 54 21 0 247 300 218 271 7.06e-13 69.3
MS.gene019228.t1 MTR_7g115530 61.111 54 21 0 247 300 218 271 7.21e-13 69.7
MS.gene019228.t1 MTR_7g098250 52.308 65 31 0 247 311 262 326 7.67e-13 70.1
MS.gene019228.t1 MTR_1g080330 59.259 54 22 0 247 300 175 228 1.05e-12 69.3
MS.gene019228.t1 MTR_7g115530 61.111 54 21 0 247 300 218 271 1.55e-12 68.9
MS.gene019228.t1 MTR_2g023580 51.613 62 30 0 239 300 47 108 2.27e-12 66.6
MS.gene019228.t1 MTR_4g121020 40.678 118 56 4 244 361 212 315 2.63e-12 68.6
MS.gene019228.t1 MTR_4g121020 40.678 118 56 4 244 361 212 315 2.64e-12 68.6
MS.gene019228.t1 MTR_2g450070 44.872 78 40 3 244 321 210 284 2.70e-12 68.6
MS.gene019228.t1 MTR_2g450070 44.872 78 40 3 244 321 210 284 2.77e-12 68.6
MS.gene019228.t1 MTR_4g121020 40.678 118 56 4 244 361 108 211 3.27e-12 68.2
MS.gene019228.t1 MTR_1g013170 47.059 68 35 1 242 309 186 252 4.60e-12 67.8
MS.gene019228.t1 MTR_4g064730 45.312 64 34 1 243 306 127 189 6.35e-12 66.2
MS.gene019228.t1 MTR_0223s0040 61.224 49 19 0 252 300 23 71 6.81e-12 65.9
MS.gene019228.t1 MTR_8g066310 35.135 148 75 5 234 378 159 288 6.99e-12 66.6
MS.gene019228.t1 MTR_6g005650 68.333 60 15 1 213 272 84 139 9.56e-12 65.5
MS.gene019228.t1 MTR_1g112370 59.184 49 20 0 252 300 27 75 1.12e-11 65.9
MS.gene019228.t1 MTR_7g088070 46.575 73 38 1 239 311 42 113 1.41e-11 65.1
MS.gene019228.t1 MTR_5g014040 39.130 92 50 2 220 306 284 374 1.55e-11 66.2
MS.gene019228.t1 MTR_5g014040 39.130 92 50 2 220 306 244 334 1.78e-11 65.9
MS.gene019228.t1 MTR_4g078810 41.573 89 47 2 243 327 154 241 1.80e-11 65.5
MS.gene019228.t1 MTR_7g115530 59.615 52 21 0 247 298 218 269 1.89e-11 64.3
MS.gene019228.t1 MTR_2g034960 42.353 85 45 2 244 328 208 288 1.90e-11 65.9
MS.gene019228.t1 MTR_3g064840 45.745 94 48 3 220 310 245 338 2.61e-11 65.1
MS.gene019228.t1 MTR_3g106220 41.667 72 41 1 246 317 197 267 2.79e-11 65.5
MS.gene019228.t1 MTR_7g088070 50.794 63 31 0 239 301 42 104 2.87e-11 63.9
MS.gene019228.t1 MTR_6g032990 50.000 58 29 0 244 301 39 96 3.09e-11 64.7
MS.gene019228.t1 MTR_2g027860 56.364 55 24 0 247 301 49 103 3.91e-11 63.9
MS.gene019228.t1 MTR_2g086450 50.000 58 29 0 244 301 42 99 3.95e-11 64.3
MS.gene019228.t1 MTR_1g032570 48.387 62 31 1 245 306 198 258 5.90e-11 64.3
MS.gene019228.t1 MTR_1g032570 48.387 62 31 1 245 306 129 189 5.91e-11 64.3
MS.gene019228.t1 MTR_6g071625 38.235 102 57 2 232 328 182 282 6.15e-11 63.9
MS.gene019228.t1 MTR_7g069660 45.312 64 35 0 237 300 61 124 7.06e-11 63.5
MS.gene019228.t1 MTR_4g081710 42.667 75 42 1 244 317 14 88 7.18e-11 63.5
MS.gene019228.t1 MTR_7g115530 56.604 53 23 0 247 299 218 270 8.09e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019228.t1 AT1G49560 48.193 166 74 4 219 376 164 325 6.06e-36 134
MS.gene019228.t1 AT2G03500 44.693 179 80 4 169 338 159 327 4.33e-35 134
MS.gene019228.t1 AT1G68670 65.591 93 24 1 244 328 212 304 1.79e-33 128
MS.gene019228.t1 AT1G13300 67.416 89 24 2 246 329 180 268 2.27e-32 125
MS.gene019228.t1 AT1G25550 52.941 119 49 2 244 355 206 324 1.65e-31 122
MS.gene019228.t1 AT3G25790 49.580 119 45 3 251 361 200 311 6.48e-29 115
MS.gene019228.t1 AT4G37180 38.776 196 87 5 157 347 146 313 1.64e-28 114
MS.gene019228.t1 AT4G37180 38.776 196 87 5 157 347 139 306 1.97e-28 114
MS.gene019228.t1 AT1G25550 81.481 54 10 0 244 297 206 259 3.89e-24 100
MS.gene019228.t1 AT1G49560 60.759 79 31 0 219 297 164 242 3.02e-23 98.2
MS.gene019228.t1 AT4G37180 40.426 141 65 3 157 297 139 260 1.33e-22 96.7
MS.gene019228.t1 AT3G25790 76.596 47 11 0 251 297 200 246 8.30e-19 85.5
MS.gene019228.t1 AT5G05090 47.761 67 34 1 240 306 74 139 6.36e-14 71.6
MS.gene019228.t1 AT2G40970 47.761 67 34 1 240 306 98 163 6.55e-14 71.2
MS.gene019228.t1 AT3G10760 47.761 67 34 1 240 306 98 163 7.23e-14 72.4
MS.gene019228.t1 AT5G59570 46.875 64 33 1 243 306 137 199 2.90e-13 70.1
MS.gene019228.t1 AT5G59570 46.875 64 33 1 243 306 137 199 2.90e-13 70.1
MS.gene019228.t1 AT3G04450 61.111 54 21 0 247 300 238 291 3.85e-13 70.1
MS.gene019228.t1 AT3G04450 49.296 71 36 0 247 317 238 308 6.36e-13 70.1
MS.gene019228.t1 AT3G04450 49.296 71 36 0 247 317 198 268 7.46e-13 69.7
MS.gene019228.t1 AT3G04450 49.296 71 36 0 247 317 198 268 7.46e-13 69.7
MS.gene019228.t1 AT5G29000 57.143 56 24 0 245 300 229 284 1.49e-12 68.2
MS.gene019228.t1 AT5G58080 42.857 84 38 2 244 318 191 273 1.94e-12 69.3
MS.gene019228.t1 AT2G06020 34.513 113 71 2 204 316 44 153 2.05e-12 67.8
MS.gene019228.t1 AT3G13040 54.386 57 26 0 245 301 239 295 4.33e-12 67.8
MS.gene019228.t1 AT3G13040 54.386 57 26 0 245 301 239 295 4.33e-12 67.8
MS.gene019228.t1 AT3G13040 54.386 57 26 0 245 301 239 295 4.33e-12 67.8
MS.gene019228.t1 AT5G29000 59.259 54 22 0 247 300 231 284 4.87e-12 67.4
MS.gene019228.t1 AT2G01760 50.794 63 30 1 244 306 225 286 5.37e-12 67.4
MS.gene019228.t1 AT4G28610 50.746 67 32 1 247 312 225 291 5.45e-12 67.4
MS.gene019228.t1 AT5G29000 59.259 54 22 0 247 300 188 241 5.52e-12 67.0
MS.gene019228.t1 AT5G29000 59.259 54 22 0 247 300 188 241 5.52e-12 67.0
MS.gene019228.t1 AT2G01760 50.794 63 30 1 244 306 132 193 6.41e-12 66.2
MS.gene019228.t1 AT3G16857 38.655 119 56 3 246 361 166 270 6.46e-12 67.4
MS.gene019228.t1 AT2G01760 50.794 63 30 1 244 306 197 258 6.48e-12 67.0
MS.gene019228.t1 AT3G46640 45.312 64 34 1 243 306 140 202 6.51e-12 66.6
MS.gene019228.t1 AT3G46640 45.312 64 34 1 243 306 140 202 6.51e-12 66.6
MS.gene019228.t1 AT3G16857 38.655 119 56 3 246 361 236 340 6.96e-12 67.4
MS.gene019228.t1 AT3G46640 37.363 91 54 2 243 331 140 229 7.05e-12 66.2
MS.gene019228.t1 AT3G16857 38.655 119 56 3 246 361 236 340 7.77e-12 67.4
MS.gene019228.t1 AT2G38300 46.774 62 33 0 239 300 46 107 9.62e-12 66.2
MS.gene019228.t1 AT1G32240 43.820 89 49 1 234 321 199 287 1.41e-11 65.9
MS.gene019228.t1 AT2G20400 48.571 70 35 1 247 315 231 300 1.67e-11 65.9
MS.gene019228.t1 AT2G20400 51.562 64 30 1 247 310 231 293 2.10e-11 65.5
MS.gene019228.t1 AT1G32240 43.820 89 49 1 234 321 199 287 2.40e-11 65.1
MS.gene019228.t1 AT2G01060 51.562 64 30 1 247 310 15 77 2.74e-11 64.3
MS.gene019228.t1 AT5G18240 51.724 58 28 0 244 301 42 99 2.80e-11 65.1
MS.gene019228.t1 AT5G18240 51.724 58 28 0 244 301 42 99 2.80e-11 65.1
MS.gene019228.t1 AT5G18240 51.724 58 28 0 244 301 42 99 2.89e-11 65.1
MS.gene019228.t1 AT3G04030 50.000 58 29 0 244 301 42 99 2.98e-11 64.7
MS.gene019228.t1 AT5G18240 51.724 58 28 0 244 301 42 99 3.12e-11 64.7
MS.gene019228.t1 AT5G18240 51.724 58 28 0 244 301 42 99 3.12e-11 64.7
MS.gene019228.t1 AT3G04030 50.000 58 29 0 244 301 42 99 3.42e-11 64.7
MS.gene019228.t1 AT2G02060 48.387 62 32 0 239 300 21 82 5.79e-11 62.8
MS.gene019228.t1 AT2G02060 48.387 62 32 0 239 300 21 82 5.79e-11 62.8
MS.gene019228.t1 AT5G45580 44.928 69 38 0 247 315 23 91 5.92e-11 63.2
MS.gene019228.t1 AT1G14600 47.692 65 34 0 236 300 12 76 6.29e-11 62.8
MS.gene019228.t1 AT5G45580 44.928 69 38 0 247 315 7 75 6.30e-11 62.8

Find 94 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTATTTCTTGGAGGTTTA+TGG 0.150361 3.2:+39816470 MS.gene019228:CDS
GGTTCTTCCTTCTCTTCTTT+AGG 0.234160 3.2:-39815175 None:intergenic
GATCAGTCTGTTGTATTTCT+TGG 0.239407 3.2:+39816460 MS.gene019228:CDS
AAAGAATGCCTATTCCTTAC+AGG 0.261765 3.2:-39815196 None:intergenic
TTCAGCCGCAGCAGACTTCT+AGG 0.300158 3.2:+39815346 MS.gene019228:CDS
ATCAGTTCTCTAATTTGCTT+TGG 0.308173 3.2:-39816036 None:intergenic
TTCAATCTTGTAGTAGCAAT+AGG 0.367569 3.2:+39815080 MS.gene019228:CDS
TGGTTACAGAATCTTTGTTT+TGG 0.370943 3.2:+39813500 MS.gene019228:CDS
GATTGAGAAGCAGTTCTAAC+AGG 0.380368 3.2:+39815266 MS.gene019228:CDS
TTTGATGGTGTTGAAATTCA+TGG 0.380570 3.2:+39813471 MS.gene019228:CDS
ACAAATCTTCGGTGCAATTC+CGG 0.386895 3.2:-39815390 None:intergenic
AAGAGTCTGAGGGAAGGATT+TGG 0.407195 3.2:+39815235 MS.gene019228:CDS
TTGAGCTGCGATTCAATTCA+TGG 0.416426 3.2:+39814447 MS.gene019228:intron
CGGCGGAAACGGCGTGGTCG+CGG 0.416993 3.2:-39813027 None:intergenic
AGGAAGAACCTGTAAGGAAT+AGG 0.417532 3.2:+39815188 MS.gene019228:CDS
TTTCTTCTTCCTCTAATCTT+CGG 0.424001 3.2:+39813094 MS.gene019228:CDS
CAGTCTGTTGTATTTCTTGG+AGG 0.429416 3.2:+39816463 MS.gene019228:CDS
AAGGGTAGCAGTACGGCTTC+TGG 0.429606 3.2:+39816523 MS.gene019228:CDS
GGCGAGGACGACGGCGGAAA+CGG 0.431960 3.2:-39813038 None:intergenic
TTCATTTAGCTACAGGATCC+CGG 0.434371 3.2:+39816563 MS.gene019228:CDS
TTGCTACTACAAGATTGAAA+AGG 0.437021 3.2:-39815076 None:intergenic
TTATGATGATGATCTTAAAC+AGG 0.440099 3.2:+39814504 MS.gene019228:CDS
AACAGAAGAATACGCTGAAA+AGG 0.441077 3.2:-39815125 None:intergenic
AGAGAACTGATACAAGTTGA+TGG 0.447103 3.2:+39816048 MS.gene019228:CDS
TCTTCACTTCATCATTAGTC+AGG 0.447623 3.2:-39816071 None:intergenic
ACTAACCTACCGAAGATTAG+AGG 0.448596 3.2:-39813103 None:intergenic
GTTAATGCGTTGCAGAAGCT+TGG 0.458197 3.2:+39815411 MS.gene019228:CDS
TCCCTCAGACTCTTCACCTC+AGG 0.461715 3.2:-39815226 None:intergenic
TGTCCACTTCATTTAGCTAC+AGG 0.467143 3.2:+39816556 MS.gene019228:CDS
TTGATGAATGTGAAACTAGA+TGG 0.478216 3.2:+39814548 MS.gene019228:CDS
GGCGGAAACGGCGTGGTCGC+GGG 0.485583 3.2:-39813026 None:intergenic
GCAACGCATTAACAAATCTT+CGG 0.490115 3.2:-39815401 None:intergenic
TGAGGGAAGGATTTGGTTCG+AGG 0.493121 3.2:+39815242 MS.gene019228:CDS
GCGATTCAATTCATGGGAGT+TGG 0.499887 3.2:+39814454 MS.gene019228:CDS
GAAGTCTGCTGCGGCTGAAG+TGG 0.500174 3.2:-39815342 None:intergenic
TGCTACTACAAGATTGAAAA+GGG 0.504468 3.2:-39815075 None:intergenic
AAGAGAAGGAAGAACCTGTA+AGG 0.506152 3.2:+39815182 MS.gene019228:CDS
CAGTTGGCAATGACCCTCCC+CGG 0.513325 3.2:-39816582 None:intergenic
TCATTTAGCTACAGGATCCC+GGG 0.515125 3.2:+39816564 MS.gene019228:CDS
ATCAGCACCTAAAGAAGAGA+AGG 0.517481 3.2:+39815168 MS.gene019228:CDS
CAGAAGCTTGGAGGTTCTCA+AGG 0.522479 3.2:+39815423 MS.gene019228:CDS
ACAGAAGAATACGCTGAAAA+GGG 0.523683 3.2:-39815124 None:intergenic
CTCTTCCAAGGGTAGCAGTA+CGG 0.527249 3.2:+39816516 MS.gene019228:CDS
GAGTCATTGTATTGTTCTTG+AGG 0.529959 3.2:-39816496 None:intergenic
AGTGTGTTCGATGGCGGAGA+CGG 0.536209 3.2:-39813059 None:intergenic
AGAAGCCGTACTGCTACCCT+TGG 0.538042 3.2:-39816521 None:intergenic
TGATCGGAAAAGTGATCGGC+GGG 0.539323 3.2:+39812933 MS.gene019228:CDS
GAAACGGCGTGGTCGCGGGT+AGG 0.546232 3.2:-39813022 None:intergenic
CTCCTGAGGTGAAGAGTCTG+AGG 0.547301 3.2:+39815224 MS.gene019228:CDS
GGGATTGGATTGAAGATGAT+CGG 0.551638 3.2:+39812917 None:intergenic
ACACAGCTCATGCTGCTGCT+AGG 0.553687 3.2:+39814336 MS.gene019228:CDS
AATGCGTTGCAGAAGCTTGG+AGG 0.554542 3.2:+39815414 MS.gene019228:CDS
TCCATGCTATCACCTTCAGT+TGG 0.560829 3.2:-39816598 None:intergenic
CTAGGAAACAGAGGAGATGT+TGG 0.562978 3.2:+39815364 MS.gene019228:CDS
GGCGGAGACGGCGAGGACGA+CGG 0.570002 3.2:-39813047 None:intergenic
TAGCTACAGGATCCCGGGGA+GGG 0.570786 3.2:+39816569 MS.gene019228:CDS
ACAATACAATGACTCTTCCA+AGG 0.575169 3.2:+39816504 MS.gene019228:CDS
TGAGCTGCGATTCAATTCAT+GGG 0.576505 3.2:+39814448 MS.gene019228:intron
GATAATGTCACAGTTGTCAC+AGG 0.582170 3.2:-39815148 None:intergenic
GATCGGCGGGAGGGTTAGAG+AGG 0.584550 3.2:+39812946 MS.gene019228:CDS
GTTGAAATTCATGGAGCTCA+TGG 0.586021 3.2:+39813480 MS.gene019228:CDS
TGTAGTAGCAATAGGAATGG+TGG 0.590861 3.2:+39815088 MS.gene019228:CDS
GCCAACTGAAGGTGATAGCA+TGG 0.591941 3.2:+39816597 MS.gene019228:CDS
AGTTGGCAATGACCCTCCCC+GGG 0.593531 3.2:-39816581 None:intergenic
ACAGAGGAGATGTTGGTCAC+CGG 0.596435 3.2:+39815371 MS.gene019228:CDS
CGGAAAAGTGATCGGCGGGA+GGG 0.597609 3.2:+39812937 MS.gene019228:CDS
GGAGGGTCATTGCCAACTGA+AGG 0.603075 3.2:+39816586 MS.gene019228:CDS
AGATTAGAGGAAGAAGAAAA+CGG 0.604271 3.2:-39813090 None:intergenic
TGATCAGTACCACTTGCAGT+TGG 0.605218 3.2:-39816442 None:intergenic
CGGAGAGTTCCAACTGCAAG+TGG 0.605354 3.2:+39816433 MS.gene019228:CDS
GATCCTGTAGCTAAATGAAG+TGG 0.611044 3.2:-39816559 None:intergenic
AAGATGATCGGAAAAGTGAT+CGG 0.615466 3.2:+39812929 None:intergenic
GTGGAGATCAGTGTGTTCGA+TGG 0.615722 3.2:-39813068 None:intergenic
TTAGAGGAAGAAGAAAACGG+TGG 0.616708 3.2:-39813087 None:intergenic
TCTTGTAGTAGCAATAGGAA+TGG 0.623566 3.2:+39815085 MS.gene019228:CDS
ATTGAGAAGCAGTTCTAACA+GGG 0.626581 3.2:+39815267 MS.gene019228:CDS
TCCTGAGGTGAAGAGTCTGA+GGG 0.627063 3.2:+39815225 MS.gene019228:CDS
GAGGGAAGGATTTGGTTCGA+GGG 0.630808 3.2:+39815243 MS.gene019228:CDS
GAGATCAGTGTGTTCGATGG+CGG 0.631280 3.2:-39813065 None:intergenic
GAGGTGAAGAGTCTGAGGGA+AGG 0.631423 3.2:+39815229 MS.gene019228:CDS
TCGGAAAAGTGATCGGCGGG+AGG 0.634971 3.2:+39812936 MS.gene019228:CDS
GGAGACGGCGAGGACGACGG+CGG 0.637564 3.2:-39813044 None:intergenic
CAATACAATGACTCTTCCAA+GGG 0.642827 3.2:+39816505 MS.gene019228:CDS
ATCGGCGGGAGGGTTAGAGA+GGG 0.647656 3.2:+39812947 MS.gene019228:CDS
AGCAGACTTCTAGGAAACAG+AGG 0.657415 3.2:+39815355 MS.gene019228:CDS
AGGGAAGGATTTGGTTCGAG+GGG 0.657557 3.2:+39815244 MS.gene019228:CDS
AGAAATACAGATTTCATACA+CGG 0.657784 3.2:+39816413 MS.gene019228:intron
CATTTAGCTACAGGATCCCG+GGG 0.660202 3.2:+39816565 MS.gene019228:CDS
GTTCGATGGCGGAGACGGCG+AGG 0.661359 3.2:-39813054 None:intergenic
GGACGACGGCGGAAACGGCG+TGG 0.666064 3.2:-39813033 None:intergenic
ATGATCGGAAAAGTGATCGG+CGG 0.669379 3.2:+39812932 MS.gene019228:CDS
TTAGCTACAGGATCCCGGGG+AGG 0.681645 3.2:+39816568 MS.gene019228:CDS
TGTTTCCTAGAAGTCTGCTG+CGG 0.688682 3.2:-39815351 None:intergenic
GCTAAATGAAGTGGACACTG+TGG 0.743781 3.2:-39816550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAGAAAATAAATC+AGG - chr3.2:39814049-39814068 None:intergenic 10.0%
!!! ATTATATGATTTACTATTTT+AGG + chr3.2:39814254-39814273 MS.gene019228:intron 10.0%
!!! TTTATTTTCTTATTTTTTGA+AGG + chr3.2:39814051-39814070 MS.gene019228:intron 10.0%
!! AATCTATAATATTTCCAAAT+TGG - chr3.2:39815573-39815592 None:intergenic 15.0%
!! ACTTCAGTTAAATTAAAAAT+AGG - chr3.2:39814752-39814771 None:intergenic 15.0%
!!! AAAATGGTTTATTTTTCAAT+TGG + chr3.2:39813317-39813336 MS.gene019228:intron 15.0%
!!! AAATGGTTTATTTTTCAATT+GGG + chr3.2:39813318-39813337 MS.gene019228:intron 15.0%
!!! ATCATTTAAAATCAATATAG+AGG - chr3.2:39814166-39814185 None:intergenic 15.0%
!! AAAAATTAAAAATGGAGTGT+TGG + chr3.2:39813397-39813416 MS.gene019228:intron 20.0%
!! AAAATAAATCAGGAAAATGA+AGG - chr3.2:39814039-39814058 None:intergenic 20.0%
!! GGGTTGTTAAAAATTAAAAA+TGG + chr3.2:39813389-39813408 MS.gene019228:intron 20.0%
!! GTAATAACATTACATTTGTT+TGG + chr3.2:39815973-39815992 MS.gene019228:intron 20.0%
!! TAACAACAAACAAACAAAAA+AGG - chr3.2:39814125-39814144 None:intergenic 20.0%
!! TATGATCATCTACAATAATT+TGG - chr3.2:39813899-39813918 None:intergenic 20.0%
!! TTGGAAATATTATAGATTAG+TGG + chr3.2:39815575-39815594 MS.gene019228:intron 20.0%
!!! AATTTGTGTTTGATTTTTGT+AGG + chr3.2:39814305-39814324 MS.gene019228:intron 20.0%
!!! ATTATGAATTTAAAACCCTA+AGG + chr3.2:39814795-39814814 MS.gene019228:intron 20.0%
!!! ATTTTCTTATTTTTTGAAGG+TGG + chr3.2:39814054-39814073 MS.gene019228:intron 20.0%
!!! TTTGTTTTGGTTATTAATGA+GGG + chr3.2:39814990-39815009 MS.gene019228:intron 20.0%
!!! TTTTGAACTTTTTGAGTTTT+TGG + chr3.2:39813361-39813380 MS.gene019228:intron 20.0%
!!! TTTTGTTTTGGTTATTAATG+AGG + chr3.2:39814989-39815008 MS.gene019228:intron 20.0%
! AAAAATCTGAGAATTATAGC+TGG + chr3.2:39816635-39816654 MS.gene019228:CDS 25.0%
! AGAAATACAGATTTCATACA+CGG + chr3.2:39816413-39816432 MS.gene019228:intron 25.0%
! ATGAAAAACACCATAAAAAG+AGG - chr3.2:39813935-39813954 None:intergenic 25.0%
! ATGTTAAAAACTGTGTGAAA+AGG + chr3.2:39813280-39813299 MS.gene019228:intron 25.0%
! ATTGTAGATGATCATATCAT+AGG + chr3.2:39813903-39813922 MS.gene019228:intron 25.0%
! CTTTATTAAGCTTAGTTACT+AGG + chr3.2:39816150-39816169 MS.gene019228:intron 25.0%
! TGTTAAAAACTGTGTGAAAA+GGG + chr3.2:39813281-39813300 MS.gene019228:intron 25.0%
! TTGTGTTATAAAGTTTGAAC+TGG + chr3.2:39816358-39816377 MS.gene019228:intron 25.0%
! TTTCTTTAGACAATTTGGAA+TGG + chr3.2:39813869-39813888 MS.gene019228:intron 25.0%
!! AATCCTTAAACTTTTAACAC+TGG - chr3.2:39815627-39815646 None:intergenic 25.0%
!! CAATTTTGCATACATAGTTT+TGG + chr3.2:39815944-39815963 MS.gene019228:intron 25.0%
!! TTATGATGATGATCTTAAAC+AGG + chr3.2:39814504-39814523 MS.gene019228:CDS 25.0%
!!! ACAATCAATTGTTTTATGCT+TGG + chr3.2:39813958-39813977 MS.gene019228:intron 25.0%
!!! CTTTCGTATTTGTTTTGTTT+TGG + chr3.2:39814977-39814996 MS.gene019228:intron 25.0%
!!! GTTTCTTTGTTTTTAATCGA+TGG + chr3.2:39814222-39814241 MS.gene019228:intron 25.0%
!!! TGATAGGCTTATATGTTTTT+TGG - chr3.2:39815903-39815922 None:intergenic 25.0%
!!! TTTTTGAGTTTTTGGAATCT+GGG + chr3.2:39813369-39813388 MS.gene019228:intron 25.0%
AATTGAGAAAGAATTGGCTA+AGG + chr3.2:39814924-39814943 MS.gene019228:intron 30.0%
AATTGCAAAGGCAAATCATT+TGG - chr3.2:39815929-39815948 None:intergenic 30.0%
ACATGCATGTCATTGAATAA+AGG - chr3.2:39813136-39813155 None:intergenic 30.0%
AGATTAGAGGAAGAAGAAAA+CGG - chr3.2:39813093-39813112 None:intergenic 30.0%
ATGCCAGTGTTAAAAGTTTA+AGG + chr3.2:39815621-39815640 MS.gene019228:intron 30.0%
ATGTCATTGAATAAAGGAAG+AGG - chr3.2:39813130-39813149 None:intergenic 30.0%
ATTCAATGACATGCATGTTA+TGG + chr3.2:39813138-39813157 MS.gene019228:intron 30.0%
CTATAGACAAGTCAATTTGT+AGG + chr3.2:39815766-39815785 MS.gene019228:intron 30.0%
CTATGTATGCAAAATTGCAA+AGG - chr3.2:39815941-39815960 None:intergenic 30.0%
GGGAAAATGATACTACAAAA+TGG + chr3.2:39813301-39813320 MS.gene019228:intron 30.0%
TCACAAAAAAGAAACATGCA+AGG - chr3.2:39814191-39814210 None:intergenic 30.0%
TCATCATCATAAATACCATC+TGG - chr3.2:39816274-39816293 None:intergenic 30.0%
TCCAAAAACTTACTTGCAAA+TGG - chr3.2:39816098-39816117 None:intergenic 30.0%
TCTGAGAATTGAGAAAGAAT+TGG + chr3.2:39814918-39814937 MS.gene019228:intron 30.0%
TGCGTAAATTTAGATAAGCA+AGG + chr3.2:39815724-39815743 MS.gene019228:intron 30.0%
TGCTACTACAAGATTGAAAA+GGG - chr3.2:39815078-39815097 None:intergenic 30.0%
TGTGTTCAATTGAATGAGTT+GGG + chr3.2:39813588-39813607 MS.gene019228:intron 30.0%
TTCAATCTTGTAGTAGCAAT+AGG + chr3.2:39815080-39815099 MS.gene019228:CDS 30.0%
TTGATGAATGTGAAACTAGA+TGG + chr3.2:39814548-39814567 MS.gene019228:CDS 30.0%
TTGCTACTACAAGATTGAAA+AGG - chr3.2:39815079-39815098 None:intergenic 30.0%
TTGTATTTCTTGGAGGTTTA+TGG + chr3.2:39816470-39816489 MS.gene019228:CDS 30.0%
TTGTGTTCAATTGAATGAGT+TGG + chr3.2:39813587-39813606 MS.gene019228:intron 30.0%
TTTCTTCTTCCTCTAATCTT+CGG + chr3.2:39813094-39813113 MS.gene019228:CDS 30.0%
TTTGAAGGTGGTGAAATTAT+TGG + chr3.2:39814066-39814085 MS.gene019228:intron 30.0%
! AAAGCAAAGTTTTCTCAAGA+GGG + chr3.2:39814654-39814673 MS.gene019228:intron 30.0%
! AGGCTCTGATATTCAAAATT+TGG - chr3.2:39814423-39814442 None:intergenic 30.0%
! ATAATTCTCGACACACTTTT+AGG + chr3.2:39814846-39814865 MS.gene019228:intron 30.0%
! ATTATAGATTAGTGGATCGA+TGG + chr3.2:39815583-39815602 MS.gene019228:intron 30.0%
! GCTACTTTCTTTAGACAATT+TGG + chr3.2:39813864-39813883 MS.gene019228:intron 30.0%
! GTTCTAGACTTATGAATTAG+TGG + chr3.2:39813745-39813764 MS.gene019228:intron 30.0%
! TAGGTTTGTACCTCTTTTTA+TGG + chr3.2:39813922-39813941 MS.gene019228:intron 30.0%
!! AATTAAAAATGGAGTGTTGG+TGG + chr3.2:39813400-39813419 MS.gene019228:intron 30.0%
!! ACACTCAATTTTGACCAATT+TGG + chr3.2:39815556-39815575 MS.gene019228:intron 30.0%
!! ATCAGTTCTCTAATTTGCTT+TGG - chr3.2:39816039-39816058 None:intergenic 30.0%
!! ATGAGGGTTTTGTATTTGTT+TGG + chr3.2:39815006-39815025 MS.gene019228:intron 30.0%
!! TGAAACTGATTCACTTTTGT+TGG - chr3.2:39814824-39814843 None:intergenic 30.0%
!! TGGTTACAGAATCTTTGTTT+TGG + chr3.2:39813500-39813519 MS.gene019228:CDS 30.0%
!! TTGTGTTTGATTTTTGTAGG+TGG + chr3.2:39814308-39814327 MS.gene019228:intron 30.0%
!! TTTGATGGTGTTGAAATTCA+TGG + chr3.2:39813471-39813490 MS.gene019228:CDS 30.0%
!!! ACTTTACTGTTTTTGTGATG+TGG + chr3.2:39815458-39815477 MS.gene019228:intron 30.0%
!!! CTTTTTGAGTTTTTGGAATC+TGG + chr3.2:39813368-39813387 MS.gene019228:intron 30.0%
!!! TTTGTTTTTAATCGATGGTG+AGG + chr3.2:39814227-39814246 MS.gene019228:intron 30.0%
AAAGAATGCCTATTCCTTAC+AGG - chr3.2:39815199-39815218 None:intergenic 35.0%
AACAGAAGAATACGCTGAAA+AGG - chr3.2:39815128-39815147 None:intergenic 35.0%
AATCTGATCAAGGATTGTTC+CGG - chr3.2:39815815-39815834 None:intergenic 35.0%
ACAATACAATGACTCTTCCA+AGG + chr3.2:39816504-39816523 MS.gene019228:CDS 35.0%
ACAGAAGAATACGCTGAAAA+GGG - chr3.2:39815127-39815146 None:intergenic 35.0%
ACCTACAAGATGAGATTTGA+AGG + chr3.2:39813801-39813820 MS.gene019228:intron 35.0%
AGATAAGCAAGGAGACAAAT+AGG + chr3.2:39815735-39815754 MS.gene019228:intron 35.0%
AGTTACTAGGTGTTTGATGA+TGG + chr3.2:39816163-39816182 MS.gene019228:intron 35.0%
ATGCAAGTATTACATCCTTC+CGG - chr3.2:39813625-39813644 None:intergenic 35.0%
CAATACAATGACTCTTCCAA+GGG + chr3.2:39816505-39816524 MS.gene019228:CDS 35.0%
CTCAATCGCAAATATAAACG+AGG + chr3.2:39816244-39816263 MS.gene019228:intron 35.0%
CTCGTTTATATTTGCGATTG+AGG - chr3.2:39816246-39816265 None:intergenic 35.0%
GAGTCATTGTATTGTTCTTG+AGG - chr3.2:39816499-39816518 None:intergenic 35.0%
GATCAGTCTGTTGTATTTCT+TGG + chr3.2:39816460-39816479 MS.gene019228:CDS 35.0%
GCAAATCATTTGGACTTGAT+AGG - chr3.2:39815919-39815938 None:intergenic 35.0%
GCAACGCATTAACAAATCTT+CGG - chr3.2:39815404-39815423 None:intergenic 35.0%
GGAGGTTATTAATCTGATCA+AGG - chr3.2:39815825-39815844 None:intergenic 35.0%
GGTGATCGATTACATGTTAA+TGG + chr3.2:39813213-39813232 MS.gene019228:intron 35.0%
TAATAAAGCACGCAGTTAAG+AGG - chr3.2:39816138-39816157 None:intergenic 35.0%
TATAAACGAGGTATACCAGA+TGG + chr3.2:39816256-39816275 MS.gene019228:intron 35.0%
TCCTTCAAATCTCATCTTGT+AGG - chr3.2:39813805-39813824 None:intergenic 35.0%
TCTATCCCGAATTCAAATGT+TGG + chr3.2:39815789-39815808 MS.gene019228:intron 35.0%
TCTTATATAGTTGTGCTGTG+AGG + chr3.2:39815526-39815545 MS.gene019228:intron 35.0%
TCTTCACTTCATCATTAGTC+AGG - chr3.2:39816074-39816093 None:intergenic 35.0%
TCTTGTAGTAGCAATAGGAA+TGG + chr3.2:39815085-39815104 MS.gene019228:CDS 35.0%
TGCTAATCCATAGTTTGGTT+GGG - chr3.2:39815846-39815865 None:intergenic 35.0%
TTAGTTCACCAGTGAAGTTA+GGG + chr3.2:39815699-39815718 MS.gene019228:intron 35.0%
TTGAAAACACTGCACAAATG+TGG + chr3.2:39814680-39814699 MS.gene019228:intron 35.0%
! AGAGAACTGATACAAGTTGA+TGG + chr3.2:39816048-39816067 MS.gene019228:CDS 35.0%
! AGGCATTTAGGATTGAGATT+TGG + chr3.2:39816335-39816354 MS.gene019228:intron 35.0%
! ATTGAGAAGCAGTTCTAACA+GGG + chr3.2:39815267-39815286 MS.gene019228:CDS 35.0%
! CAAAGCAAAGTTTTCTCAAG+AGG + chr3.2:39814653-39814672 MS.gene019228:intron 35.0%
! GCCATTTGCAAGTAAGTTTT+TGG + chr3.2:39816094-39816113 MS.gene019228:intron 35.0%
! TCTCTCTCTCTCTATGATTT+TGG + chr3.2:39813192-39813211 MS.gene019228:intron 35.0%
! TGTGTTCTCAGGATTTCTTT+TGG + chr3.2:39814096-39814115 MS.gene019228:intron 35.0%
! TTTAGTTCACCAGTGAAGTT+AGG + chr3.2:39815698-39815717 MS.gene019228:intron 35.0%
!! AACTGATTCACTTTTGTTGG+AGG - chr3.2:39814821-39814840 None:intergenic 35.0%
!! AAGAATTGGCTAAGGTGTTT+TGG + chr3.2:39814932-39814951 MS.gene019228:intron 35.0%
!! ATGCAAATTGCAGGTTTTGA+TGG + chr3.2:39813456-39813475 MS.gene019228:intron 35.0%
!!! TAGGTTCTCACTTTTTACCA+AGG - chr3.2:39814733-39814752 None:intergenic 35.0%
AAGAGAAGGAAGAACCTGTA+AGG + chr3.2:39815182-39815201 MS.gene019228:CDS 40.0%
ACTAACCTACCGAAGATTAG+AGG - chr3.2:39813106-39813125 None:intergenic 40.0%
AGGAAGAACCTGTAAGGAAT+AGG + chr3.2:39815188-39815207 MS.gene019228:CDS 40.0%
AGGTGGTGAAATTATTGGAG+TGG + chr3.2:39814071-39814090 MS.gene019228:intron 40.0%
ATAACCTCCCAACCAAACTA+TGG + chr3.2:39815836-39815855 MS.gene019228:intron 40.0%
ATCAGCACCTAAAGAAGAGA+AGG + chr3.2:39815168-39815187 MS.gene019228:CDS 40.0%
ATCTCATCTTGTGGTGTATG+AGG - chr3.2:39813830-39813849 None:intergenic 40.0%
ATTCACAGTGTCTGGTTATG+AGG + chr3.2:39816315-39816334 MS.gene019228:intron 40.0%
CAGTCTGTTGTATTTCTTGG+AGG + chr3.2:39816463-39816482 MS.gene019228:CDS 40.0%
CTCAATGTGATGCAAATTGC+AGG + chr3.2:39813447-39813466 MS.gene019228:intron 40.0%
CTGCTAATCCATAGTTTGGT+TGG - chr3.2:39815847-39815866 None:intergenic 40.0%
GATAATGTCACAGTTGTCAC+AGG - chr3.2:39815151-39815170 None:intergenic 40.0%
GATCCTGTAGCTAAATGAAG+TGG - chr3.2:39816562-39816581 None:intergenic 40.0%
GGTGGTGAAATTATTGGAGT+GGG + chr3.2:39814072-39814091 MS.gene019228:intron 40.0%
GGTTCTTCCTTCTCTTCTTT+AGG - chr3.2:39815178-39815197 None:intergenic 40.0%
GTTGAAATTCATGGAGCTCA+TGG + chr3.2:39813480-39813499 MS.gene019228:CDS 40.0%
TAATCCATAGTTTGGTTGGG+AGG - chr3.2:39815843-39815862 None:intergenic 40.0%
TGAGCTGCGATTCAATTCAT+GGG + chr3.2:39814448-39814467 MS.gene019228:intron 40.0%
TGCAAGTATTACATCCTTCC+GGG - chr3.2:39813624-39813643 None:intergenic 40.0%
TGTAGTAGCAATAGGAATGG+TGG + chr3.2:39815088-39815107 MS.gene019228:CDS 40.0%
TGTCCACTTCATTTAGCTAC+AGG + chr3.2:39816556-39816575 MS.gene019228:CDS 40.0%
TTAACACTGGCATTCAGTTC+CGG - chr3.2:39815614-39815633 None:intergenic 40.0%
TTAGAGGAAGAAGAAAACGG+TGG - chr3.2:39813090-39813109 None:intergenic 40.0%
TTCATTTAGCTACAGGATCC+CGG + chr3.2:39816563-39816582 MS.gene019228:CDS 40.0%
TTCCGGCCAACATTTGAATT+CGG - chr3.2:39815798-39815817 None:intergenic 40.0%
TTCTTCCTCTAATCTTCGGT+AGG + chr3.2:39813098-39813117 MS.gene019228:intron 40.0%
TTGAATCGCAGCTCAATCAT+AGG - chr3.2:39814443-39814462 None:intergenic 40.0%
TTGAGCTGCGATTCAATTCA+TGG + chr3.2:39814447-39814466 MS.gene019228:intron 40.0%
! ACAAATCTTCGGTGCAATTC+CGG - chr3.2:39815393-39815412 None:intergenic 40.0%
! GATTGAGAAGCAGTTCTAAC+AGG + chr3.2:39815266-39815285 MS.gene019228:CDS 40.0%
! GCATTCTTTTCTAACTCCTG+AGG + chr3.2:39815210-39815229 MS.gene019228:CDS 40.0%
! TGTCTGGTTATGAGGCATTT+AGG + chr3.2:39816323-39816342 MS.gene019228:intron 40.0%
! TGTTTGGTGAACGCTGAAAA+GGG + chr3.2:39815022-39815041 MS.gene019228:intron 40.0%
! TTGTTTGGTGAACGCTGAAA+AGG + chr3.2:39815021-39815040 MS.gene019228:intron 40.0%
!! CAACCAAACTATGGATTAGC+AGG + chr3.2:39815845-39815864 MS.gene019228:intron 40.0%
!!! TTGGCTAAGGTGTTTTGGTT+TGG + chr3.2:39814937-39814956 MS.gene019228:intron 40.0%
AAGAGTCTGAGGGAAGGATT+TGG + chr3.2:39815235-39815254 MS.gene019228:CDS 45.0%
ATGATCGGAAAAGTGATCGG+CGG + chr3.2:39812932-39812951 MS.gene019228:CDS 45.0%
CTAGGAAACAGAGGAGATGT+TGG + chr3.2:39815364-39815383 MS.gene019228:CDS 45.0%
GAGTTGGGAAAATTGTTCCC+CGG + chr3.2:39813603-39813622 MS.gene019228:intron 45.0%
GCAAGTATTACATCCTTCCG+GGG - chr3.2:39813623-39813642 None:intergenic 45.0%
GCGATTCAATTCATGGGAGT+TGG + chr3.2:39814454-39814473 MS.gene019228:CDS 45.0%
GCTAAATGAAGTGGACACTG+TGG - chr3.2:39816553-39816572 None:intergenic 45.0%
GCTTCTCTCATCTCATCTTG+TGG - chr3.2:39813839-39813858 None:intergenic 45.0%
GTATGTGCATTCACAGTGTC+TGG + chr3.2:39816307-39816326 MS.gene019228:intron 45.0%
GTTAATGCGTTGCAGAAGCT+TGG + chr3.2:39815411-39815430 MS.gene019228:CDS 45.0%
TACGCAATCCCTAACTTCAC+TGG - chr3.2:39815710-39815729 None:intergenic 45.0%
TCATTTAGCTACAGGATCCC+GGG + chr3.2:39816564-39816583 MS.gene019228:CDS 45.0%
TCCATGCTATCACCTTCAGT+TGG - chr3.2:39816601-39816620 None:intergenic 45.0%
TCCCGAATTCAAATGTTGGC+CGG + chr3.2:39815793-39815812 MS.gene019228:intron 45.0%
TCCGGCCAACATTTGAATTC+GGG - chr3.2:39815797-39815816 None:intergenic 45.0%
TCTTAACCTTCCGATTCCGA+GGG - chr3.2:39815880-39815899 None:intergenic 45.0%
TGAGATGCTATATGCAACGC+TGG - chr3.2:39813675-39813694 None:intergenic 45.0%
TGATCAGTACCACTTGCAGT+TGG - chr3.2:39816445-39816464 None:intergenic 45.0%
TGTTTCCTAGAAGTCTGCTG+CGG - chr3.2:39815354-39815373 None:intergenic 45.0%
! AGCAGACTTCTAGGAAACAG+AGG + chr3.2:39815355-39815374 MS.gene019228:CDS 45.0%
! CACTTTTGTTGGAGGCCTTA+GGG - chr3.2:39814813-39814832 None:intergenic 45.0%
!! TCACTTTTGTTGGAGGCCTT+AGG - chr3.2:39814814-39814833 None:intergenic 45.0%
AATGCGTTGCAGAAGCTTGG+AGG + chr3.2:39815414-39815433 MS.gene019228:CDS 50.0%
ACAGAGGAGATGTTGGTCAC+CGG + chr3.2:39815371-39815390 MS.gene019228:CDS 50.0%
ACTGCACAAATGTGGCCGTT+GGG + chr3.2:39814688-39814707 MS.gene019228:intron 50.0%
CAGAAGCTTGGAGGTTCTCA+AGG + chr3.2:39815423-39815442 MS.gene019228:CDS 50.0%
CATTTAGCTACAGGATCCCG+GGG + chr3.2:39816565-39816584 MS.gene019228:CDS 50.0%
CTCTTCCAAGGGTAGCAGTA+CGG + chr3.2:39816516-39816535 MS.gene019228:CDS 50.0%
GAGATCAGTGTGTTCGATGG+CGG - chr3.2:39813068-39813087 None:intergenic 50.0%
GCCAACTGAAGGTGATAGCA+TGG + chr3.2:39816597-39816616 MS.gene019228:CDS 50.0%
GCTCGAATGGGTGAATTCCT+TGG + chr3.2:39814713-39814732 MS.gene019228:intron 50.0%
GGGCCTGCTAATCCATAGTT+TGG - chr3.2:39815851-39815870 None:intergenic 50.0%
GTCTTAACCTTCCGATTCCG+AGG - chr3.2:39815881-39815900 None:intergenic 50.0%
GTGGAGATCAGTGTGTTCGA+TGG - chr3.2:39813071-39813090 None:intergenic 50.0%
TCCTGAGGTGAAGAGTCTGA+GGG + chr3.2:39815225-39815244 MS.gene019228:CDS 50.0%
TGATCGGAAAAGTGATCGGC+GGG + chr3.2:39812933-39812952 MS.gene019228:CDS 50.0%
TGGGAAAATTGTTCCCCGGA+AGG + chr3.2:39813607-39813626 MS.gene019228:intron 50.0%
TTGGTGAACGCTGAAAAGGG+AGG + chr3.2:39815025-39815044 MS.gene019228:intron 50.0%
! AGGGAAGGATTTGGTTCGAG+GGG + chr3.2:39815244-39815263 MS.gene019228:CDS 50.0%
! GAGGGAAGGATTTGGTTCGA+GGG + chr3.2:39815243-39815262 MS.gene019228:CDS 50.0%
! TAGTGGATCGATGGATGTGC+CGG + chr3.2:39815592-39815611 MS.gene019228:intron 50.0%
! TGAGGGAAGGATTTGGTTCG+AGG + chr3.2:39815242-39815261 MS.gene019228:CDS 50.0%
!! TTGGAGTGGGTTGTGTTCTC+AGG + chr3.2:39814085-39814104 MS.gene019228:intron 50.0%
AAGGGTAGCAGTACGGCTTC+TGG + chr3.2:39816523-39816542 MS.gene019228:CDS 55.0%
ACACAGCTCATGCTGCTGCT+AGG + chr3.2:39814336-39814355 MS.gene019228:CDS 55.0%
ACCTTCCGATTCCGAGGGAA+AGG - chr3.2:39815875-39815894 None:intergenic 55.0%
ACGGTAGGAAGAGACGACGA+CGG - chr3.2:39815298-39815317 None:intergenic 55.0%
AGAAGCCGTACTGCTACCCT+TGG - chr3.2:39816524-39816543 None:intergenic 55.0%
CACCCATTCGAGCTTCCCAA+CGG - chr3.2:39814706-39814725 None:intergenic 55.0%
CACTGCACAAATGTGGCCGT+TGG + chr3.2:39814687-39814706 MS.gene019228:intron 55.0%
CGGAGAGTTCCAACTGCAAG+TGG + chr3.2:39816433-39816452 MS.gene019228:CDS 55.0%
CTCCTGAGGTGAAGAGTCTG+AGG + chr3.2:39815224-39815243 MS.gene019228:CDS 55.0%
GAGGTGAAGAGTCTGAGGGA+AGG + chr3.2:39815229-39815248 MS.gene019228:CDS 55.0%
GGAGGGTCATTGCCAACTGA+AGG + chr3.2:39816586-39816605 MS.gene019228:CDS 55.0%
TCCCTCAGACTCTTCACCTC+AGG - chr3.2:39815229-39815248 None:intergenic 55.0%
TCCGATTCCGAGGGAAAGGA+GGG - chr3.2:39815871-39815890 None:intergenic 55.0%
TCCTTTCCCTCGGAATCGGA+AGG + chr3.2:39815871-39815890 MS.gene019228:intron 55.0%
TTCAGCCGCAGCAGACTTCT+AGG + chr3.2:39815346-39815365 MS.gene019228:CDS 55.0%
TTCCGATTCCGAGGGAAAGG+AGG - chr3.2:39815872-39815891 None:intergenic 55.0%
!! AGTGTGTTCGATGGCGGAGA+CGG - chr3.2:39813062-39813081 None:intergenic 55.0%
AGTTGGCAATGACCCTCCCC+GGG - chr3.2:39816584-39816603 None:intergenic 60.0%
ATCGGCGGGAGGGTTAGAGA+GGG + chr3.2:39812947-39812966 MS.gene019228:CDS 60.0%
CAGTTGGCAATGACCCTCCC+CGG - chr3.2:39816585-39816604 None:intergenic 60.0%
CGGAAAAGTGATCGGCGGGA+GGG + chr3.2:39812937-39812956 MS.gene019228:CDS 60.0%
GAAGTCTGCTGCGGCTGAAG+TGG - chr3.2:39815345-39815364 None:intergenic 60.0%
GCCCTCCTTTCCCTCGGAAT+CGG + chr3.2:39815867-39815886 MS.gene019228:intron 60.0%
GGCCGTTGGGAAGCTCGAAT+GGG + chr3.2:39814701-39814720 MS.gene019228:intron 60.0%
TAGCAGGCCCTCCTTTCCCT+CGG + chr3.2:39815861-39815880 MS.gene019228:intron 60.0%
TAGCTACAGGATCCCGGGGA+GGG + chr3.2:39816569-39816588 MS.gene019228:CDS 60.0%
TCGGAAAAGTGATCGGCGGG+AGG + chr3.2:39812936-39812955 MS.gene019228:CDS 60.0%
TGGCCGTTGGGAAGCTCGAA+TGG + chr3.2:39814700-39814719 MS.gene019228:intron 60.0%
TGGCGCAAGACGCGCATACT+CGG - chr3.2:39815325-39815344 None:intergenic 60.0%
TTAGCTACAGGATCCCGGGG+AGG + chr3.2:39816568-39816587 MS.gene019228:CDS 60.0%
CGCATACTCGGCTGCACGGT+AGG - chr3.2:39815313-39815332 None:intergenic 65.0%
GACGCGCATACTCGGCTGCA+CGG - chr3.2:39815317-39815336 None:intergenic 65.0%
GATCGGCGGGAGGGTTAGAG+AGG + chr3.2:39812946-39812965 MS.gene019228:CDS 65.0%
GAAACGGCGTGGTCGCGGGT+AGG - chr3.2:39813025-39813044 None:intergenic 70.0%
GGCGAGGACGACGGCGGAAA+CGG - chr3.2:39813041-39813060 None:intergenic 70.0%
!! GTTCGATGGCGGAGACGGCG+AGG - chr3.2:39813057-39813076 None:intergenic 70.0%
CGGCGGAAACGGCGTGGTCG+CGG - chr3.2:39813030-39813049 None:intergenic 75.0%
GGACGACGGCGGAAACGGCG+TGG - chr3.2:39813036-39813055 None:intergenic 75.0%
GGAGACGGCGAGGACGACGG+CGG - chr3.2:39813047-39813066 None:intergenic 75.0%
GGCGGAAACGGCGTGGTCGC+GGG - chr3.2:39813029-39813048 None:intergenic 75.0%
GGCGGAGACGGCGAGGACGA+CGG - chr3.2:39813050-39813069 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 39812932 39816675 39812932 ID=MS.gene019228
chr3.2 mRNA 39812932 39816675 39812932 ID=MS.gene019228.t1;Parent=MS.gene019228
chr3.2 exon 39812932 39813115 39812932 ID=MS.gene019228.t1.exon1;Parent=MS.gene019228.t1
chr3.2 CDS 39812932 39813115 39812932 ID=cds.MS.gene019228.t1;Parent=MS.gene019228.t1
chr3.2 exon 39813469 39813521 39813469 ID=MS.gene019228.t1.exon2;Parent=MS.gene019228.t1
chr3.2 CDS 39813469 39813521 39813469 ID=cds.MS.gene019228.t1;Parent=MS.gene019228.t1
chr3.2 exon 39814327 39814357 39814327 ID=MS.gene019228.t1.exon3;Parent=MS.gene019228.t1
chr3.2 CDS 39814327 39814357 39814327 ID=cds.MS.gene019228.t1;Parent=MS.gene019228.t1
chr3.2 exon 39814452 39814630 39814452 ID=MS.gene019228.t1.exon4;Parent=MS.gene019228.t1
chr3.2 CDS 39814452 39814630 39814452 ID=cds.MS.gene019228.t1;Parent=MS.gene019228.t1
chr3.2 exon 39815043 39815291 39815043 ID=MS.gene019228.t1.exon5;Parent=MS.gene019228.t1
chr3.2 CDS 39815043 39815291 39815043 ID=cds.MS.gene019228.t1;Parent=MS.gene019228.t1
chr3.2 exon 39815327 39815444 39815327 ID=MS.gene019228.t1.exon6;Parent=MS.gene019228.t1
chr3.2 CDS 39815327 39815444 39815327 ID=cds.MS.gene019228.t1;Parent=MS.gene019228.t1
chr3.2 exon 39816028 39816104 39816028 ID=MS.gene019228.t1.exon7;Parent=MS.gene019228.t1
chr3.2 CDS 39816028 39816104 39816028 ID=cds.MS.gene019228.t1;Parent=MS.gene019228.t1
chr3.2 exon 39816415 39816675 39816415 ID=MS.gene019228.t1.exon8;Parent=MS.gene019228.t1
chr3.2 CDS 39816415 39816675 39816415 ID=cds.MS.gene019228.t1;Parent=MS.gene019228.t1
Gene Sequence

>MS.gene019228

ATGATCGGAAAAGTGATCGGCGGGAGGGTTAGAGAGGGAACAAAGAACACGATTTCATCTTCTTCTCTCTATAACGCGTTCTCTGTAAAACCTACCCGCGACCACGCCGTTTCCGCCGTCGTCCTCGCCGTCTCCGCCATCGAACACACTGATCTCCACCGTTTTCTTCTTCCTCTAATCTTCGGTAGGTTAGTTCCTCTTCCTTTATTCAATGACATGCATGTTATGGATTTAGTTGTTTTTGTTTGTTCAGATTTCTCTCTCTCTCTCTCTATGATTTTGGTGATCGATTACATGTTAATGGCTTTGTTCTGTAGAAACTAATTTTTTGTGTGTTTTTATGTTAAAATGTTAAAAACTGTGTGAAAAGGGAAAATGATACTACAAAATGGTTTATTTTTCAATTGGGTTTTCATTATGATGTTAAAGTTTTGAACTTTTTGAGTTTTTGGAATCTGGGTTGTTAAAAATTAAAAATGGAGTGTTGGTGGAGTTGCTGAAAATCAAGTAACATGCTCAATGTGATGCAAATTGCAGGTTTTGATGGTGTTGAAATTCATGGAGCTCATGGTTACAGAATCTTTGTTTTGGTGAGAATAACTACTACTCAAAATTGTTTATATTAGAAACACATTTTCAATCTTTGTTGATGAACTTGTGTTCAATTGAATGAGTTGGGAAAATTGTTCCCCGGAAGGATGTAATACTTGCATACAATAAATGACTGCAGAGCATGTCTGCCAGCGTTGCATATAGCATCTCATTTTGAATTGCATGATAGTTTTTCGCAGTTGTTCTTTAAAATGTGAATGAGTTCTAGACTTATGAATTAGTGGTTAGTAGAATTACTTACAAAATATTTATAATAAACCTACAAGATGAGATTTGAAGGACTCCTCATACACCACAAGATGAGATGAGAGAAGCAATGAGCTACTTTCTTTAGACAATTTGGAATGGAGTGCCAAATTATTGTAGATGATCATATCATAGGTTTGTACCTCTTTTTATGGTGTTTTTCATTTTACAATCAATTGTTTTATGCTTGGTTGATATCACTTTACAGTGATATAGATGATTTTATATGTGATTGTAAAATTGCATCCTTCATTTTCCTGATTTATTTTCTTATTTTTTGAAGGTGGTGAAATTATTGGAGTGGGTTGTGTTCTCAGGATTTCTTTTGGTTTCCTTTTTTGTTTGTTTGTTGTTATAGATGATCTTATATGTGCCTCTATATTGATTTTAAATGATCGCCTTGCATGTTTCTTTTTTGTGATATTCTTTTTAGTTTCTTTGTTTTTAATCGATGGTGAGGTTATATTATATGATTTACTATTTTAGGCATTGTTTGTGTTTTTGATGAAATTTGAAATTTGTGTTTGATTTTTGTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGGTAAATCTTTGAACATATTTTCAATTTTTTGTGTAATTGATTTTTTTATTGTTGAGTTGATTCCAAATTTTGAATATCAGAGCCTATGATTGAGCTGCGATTCAATTCATGGGAGTTGGTGCTGACATAAATTTCAATTTGAATGATTATGATGATGATCTTAAACAGGTTAGAGAATTTTCAAGTATACTTGATGAATGTGAAACTAGATGGAGTATATCATGTAATTTTTCGATATTTTGTTACTTAGACGAAGAATTTATTGAAAGAAGAGTTTGTGCAAATACTTCGTCTACAAAGCAAAGTTTTCTCAAGAGGGAGTTTGAAAACACTGCACAAATGTGGCCGTTGGGAAGCTCGAATGGGTGAATTCCTTGGTAAAAAGTGAGAACCTATTTTTAATTTAACTGAAGTTATTTACTATGATCACATGAGATATTATGAATTTAAAACCCTAAGGCCTCCAACAAAAGTGAATCAGTTTCAACATAATTCTCGACACACTTTTAGGCTCTTTATCGTGTTATGAGAAACATGTATAAGATAATATCATACATGTTTCTGAGAATTGAGAAAGAATTGGCTAAGGTGTTTTGGTTTGGTTATAGAGATTGTGATGCTTTCGTATTTGTTTTGTTTTGGTTATTAATGAGGGTTTTGTATTTGTTTGGTGAACGCTGAAAAGGGAGGAAGAAAATTTGTGACTGTAGCTGAAGACCCTTTTCAATCTTGTAGTAGCAATAGGAATGGTGGAAGTGCTTTTATGCCCTTTTCAGCGTATTCTTCTGTTCCTGTGACAACTGTGACATTATCAGCACCTAAAGAAGAGAAGGAAGAACCTGTAAGGAATAGGCATTCTTTTCTAACTCCTGAGGTGAAGAGTCTGAGGGAAGGATTTGGTTCGAGGGGATTGAGAAGCAGTTCTAACAGGGCAGTTCCGTCGTCGTCTCTTCCTACCGTGCAGCCGAGTATGCGCGTCTTGCGCCACTTCAGCCGCAGCAGACTTCTAGGAAACAGAGGAGATGTTGGTCACCGGAATTGCACCGAAGATTTGTTAATGCGTTGCAGAAGCTTGGAGGTTCTCAAGGTATGAATTTGAAACTTTACTGTTTTTGTGATGTGGCATATGTTTCACTTTCTTAAATTAGAAATGTACATATATTTAATATCTTATATAGTTGTGCTGTGAGGTTTCAAAACACTCAATTTTGACCAATTTGGAAATATTATAGATTAGTGGATCGATGGATGTGCCGGAACTGAATGCCAGTGTTAAAAGTTTAAGGATTTGATGCTTGAAGTTGTGTTGATGTGAAATTTTAAAGAAAATGTTTGTTCTGTTTAGTTCACCAGTGAAGTTAGGGATTGCGTAAATTTAGATAAGCAAGGAGACAAATAGGAGTGTTATCTATAGACAAGTCAATTTGTAGGTCTATCCCGAATTCAAATGTTGGCCGGAACAATCCTTGATCAGATTAATAACCTCCCAACCAAACTATGGATTAGCAGGCCCTCCTTTCCCTCGGAATCGGAAGGTTAAGACCAAAAAACATATAAGCCTATCAAGTCCAAATGATTTGCCTTTGCAATTTTGCATACATAGTTTTGGTATGTTGTAATAACATTACATTTGTTTGGTTCATTTGTCTAATTAGCTGTTTTAACTGCAGCAGCAACTCCAAAGCAAATTAGAGAACTGATACAAGTTGATGGCCTGACTAATGATGAAGTGAAGAGCCATTTGCAAGTAAGTTTTTGGATTTCTTTTTATTTTTCTCCTCTTAACTGCGTGCTTTATTAAGCTTAGTTACTAGGTGTTTGATGATGGTTTATGATATAGTTAATTTAATACAGTATTAATTATATTATGTTGCTATTGAAGTATCCTCAATCGCAAATATAAACGAGGTATACCAGATGGTATTTATGATGATGATGAATATCATATTGTATGTGCATTCACAGTGTCTGGTTATGAGGCATTTAGGATTGAGATTTGGTTGTGTTATAAAGTTTGAACTGGATGTTTGACATATGATTCTTGATTATTATTGCAGAAATACAGATTTCATACACGGAGAGTTCCAACTGCAAGTGGTACTGATCAGTCTGTTGTATTTCTTGGAGGTTTATGGATGCCTCAAGAACAATACAATGACTCTTCCAAGGGTAGCAGTACGGCTTCTGGTTCTCCACAGTGTCCACTTCATTTAGCTACAGGATCCCGGGGAGGGTCATTGCCAACTGAAGGTGATAGCATGGAAGATGACAATGATGAAAAATCTGAGAATTATAGCTGGAAAAGTCATATTCACTGA
Protein sequence

>MS.gene019228.t1

MIGKVIGGRVREGTKNTISSSSLYNAFSVKPTRDHAVSAVVLAVSAIEHTDLHRFLLPLIFGFDGVEIHGAHGYRIFVLVDLTQLMLLLAAIQFMGVGADINFNLNDYDDDLKQVREFSSILDECETRWSISCNFSIFCYLDEEFIERRGGRKFVTVAEDPFQSCSSNRNGGSAFMPFSAYSSVPVTTVTLSAPKEEKEEPVRNRHSFLTPEVKSLREGFGSRGLRSSSNRAYARLAPLQPQQTSRKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELIQVDGLTNDEVKSHLQKYRFHTRRVPTASGTDQSVVFLGGLWMPQEQYNDSSKGSSTASGSPQCPLHLATGSRGGSLPTEGDSMEDDNDEKSENYSWKSHIH