Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019282.t1 | AFK40914.1 | 92.4 | 302 | 23 | 0 | 1 | 302 | 1 | 302 | 1.20E-143 | 519.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019282.t1 | Q9T0D3 | 87.9 | 99 | 12 | 0 | 18 | 116 | 53 | 151 | 6.6e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019282.t1 | B7FM72 | 92.4 | 302 | 23 | 0 | 1 | 302 | 1 | 302 | 8.3e-144 | 519.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene019282.t1 | TF | HSF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019282.t1 | MTR_5g010680 | 95.342 | 365 | 11 | 2 | 1 | 365 | 1 | 359 | 0.0 | 709 |
| MS.gene019282.t1 | MTR_0020s0020 | 45.745 | 376 | 119 | 14 | 5 | 353 | 7 | 324 | 2.86e-81 | 252 |
| MS.gene019282.t1 | MTR_1g100777 | 45.773 | 343 | 117 | 11 | 6 | 347 | 5 | 279 | 3.48e-74 | 232 |
| MS.gene019282.t1 | MTR_3g101870 | 46.087 | 230 | 113 | 4 | 1 | 219 | 1 | 230 | 5.97e-60 | 197 |
| MS.gene019282.t1 | MTR_5g017470 | 45.490 | 255 | 112 | 7 | 17 | 260 | 2 | 240 | 1.58e-59 | 194 |
| MS.gene019282.t1 | MTR_5g089170 | 44.248 | 226 | 101 | 4 | 14 | 239 | 15 | 215 | 7.67e-58 | 189 |
| MS.gene019282.t1 | MTR_7g091370 | 44.724 | 199 | 75 | 3 | 18 | 216 | 16 | 179 | 4.47e-48 | 162 |
| MS.gene019282.t1 | MTR_5g029680 | 72.000 | 100 | 26 | 1 | 22 | 121 | 30 | 127 | 8.65e-46 | 164 |
| MS.gene019282.t1 | MTR_6g043060 | 60.952 | 105 | 41 | 0 | 24 | 128 | 22 | 126 | 9.28e-43 | 151 |
| MS.gene019282.t1 | MTR_7g095680 | 65.957 | 94 | 32 | 0 | 22 | 115 | 47 | 140 | 4.52e-42 | 150 |
| MS.gene019282.t1 | MTR_1g071360 | 67.021 | 94 | 31 | 0 | 22 | 115 | 30 | 123 | 7.23e-42 | 149 |
| MS.gene019282.t1 | MTR_1g071360 | 67.021 | 94 | 31 | 0 | 22 | 115 | 27 | 120 | 1.30e-41 | 149 |
| MS.gene019282.t1 | MTR_8g087540 | 64.356 | 101 | 35 | 1 | 15 | 115 | 4 | 103 | 1.62e-41 | 150 |
| MS.gene019282.t1 | MTR_4g077970 | 63.265 | 98 | 36 | 0 | 24 | 121 | 12 | 109 | 2.27e-40 | 149 |
| MS.gene019282.t1 | MTR_4g088900 | 37.624 | 202 | 89 | 3 | 21 | 218 | 30 | 198 | 3.20e-40 | 141 |
| MS.gene019282.t1 | MTR_8g083100 | 60.577 | 104 | 41 | 0 | 25 | 128 | 23 | 126 | 6.51e-40 | 147 |
| MS.gene019282.t1 | MTR_1g061170 | 62.245 | 98 | 37 | 0 | 18 | 115 | 43 | 140 | 1.74e-39 | 145 |
| MS.gene019282.t1 | MTR_2g100680 | 57.944 | 107 | 45 | 0 | 22 | 128 | 29 | 135 | 1.51e-38 | 143 |
| MS.gene019282.t1 | MTR_3g104550 | 62.500 | 96 | 36 | 0 | 22 | 117 | 44 | 139 | 3.55e-38 | 140 |
| MS.gene019282.t1 | MTR_1g102860 | 63.830 | 94 | 34 | 0 | 22 | 115 | 38 | 131 | 1.56e-37 | 138 |
| MS.gene019282.t1 | MTR_2g100670 | 52.137 | 117 | 56 | 0 | 12 | 128 | 21 | 137 | 3.58e-37 | 136 |
| MS.gene019282.t1 | MTR_6g086805 | 59.184 | 98 | 40 | 0 | 18 | 115 | 5 | 102 | 5.03e-37 | 137 |
| MS.gene019282.t1 | MTR_2g017890 | 51.240 | 121 | 58 | 1 | 11 | 131 | 3 | 122 | 1.79e-36 | 136 |
| MS.gene019282.t1 | MTR_2g100670 | 52.137 | 117 | 56 | 0 | 12 | 128 | 129 | 245 | 3.86e-36 | 136 |
| MS.gene019282.t1 | MTR_8g105780 | 59.140 | 93 | 37 | 1 | 24 | 115 | 22 | 114 | 3.42e-32 | 124 |
| MS.gene019282.t1 | MTR_4g045757 | 54.054 | 74 | 32 | 2 | 11 | 83 | 2 | 74 | 1.69e-19 | 82.4 |
| MS.gene019282.t1 | MTR_5g047190 | 42.857 | 91 | 45 | 2 | 32 | 115 | 1 | 91 | 6.98e-19 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019282.t1 | AT4G11660 | 49.573 | 351 | 134 | 7 | 16 | 355 | 51 | 369 | 3.28e-90 | 276 |
| MS.gene019282.t1 | AT5G62020 | 46.302 | 311 | 116 | 8 | 1 | 305 | 1 | 266 | 9.38e-82 | 251 |
| MS.gene019282.t1 | AT4G36990 | 50.242 | 207 | 86 | 3 | 12 | 218 | 2 | 191 | 1.12e-61 | 199 |
| MS.gene019282.t1 | AT1G46264 | 37.248 | 298 | 172 | 5 | 19 | 306 | 29 | 321 | 4.41e-59 | 195 |
| MS.gene019282.t1 | AT2G41690 | 40.930 | 215 | 110 | 2 | 4 | 218 | 20 | 217 | 1.47e-48 | 164 |
| MS.gene019282.t1 | AT1G32330 | 65.289 | 121 | 38 | 2 | 1 | 121 | 16 | 132 | 6.56e-47 | 166 |
| MS.gene019282.t1 | AT1G32330 | 65.289 | 121 | 38 | 2 | 1 | 121 | 16 | 132 | 6.82e-47 | 166 |
| MS.gene019282.t1 | AT4G17750 | 61.667 | 120 | 46 | 0 | 2 | 121 | 30 | 149 | 1.34e-46 | 166 |
| MS.gene019282.t1 | AT3G02990 | 66.355 | 107 | 34 | 2 | 9 | 115 | 10 | 114 | 8.90e-43 | 155 |
| MS.gene019282.t1 | AT3G22830 | 67.347 | 98 | 32 | 0 | 18 | 115 | 55 | 152 | 6.48e-42 | 151 |
| MS.gene019282.t1 | AT4G13980 | 60.000 | 110 | 38 | 1 | 25 | 128 | 24 | 133 | 2.94e-40 | 148 |
| MS.gene019282.t1 | AT5G16820 | 67.708 | 96 | 30 | 1 | 20 | 115 | 24 | 118 | 7.49e-40 | 147 |
| MS.gene019282.t1 | AT5G16820 | 67.708 | 96 | 30 | 1 | 20 | 115 | 24 | 118 | 7.49e-40 | 147 |
| MS.gene019282.t1 | AT5G43840 | 63.830 | 94 | 34 | 0 | 22 | 115 | 17 | 110 | 2.67e-39 | 141 |
| MS.gene019282.t1 | AT2G26150 | 61.702 | 94 | 36 | 0 | 22 | 115 | 42 | 135 | 4.91e-39 | 142 |
| MS.gene019282.t1 | AT2G26150 | 61.702 | 94 | 36 | 0 | 22 | 115 | 42 | 135 | 4.91e-39 | 142 |
| MS.gene019282.t1 | AT3G63350 | 58.763 | 97 | 40 | 0 | 18 | 114 | 22 | 118 | 1.25e-38 | 139 |
| MS.gene019282.t1 | AT5G03720 | 64.211 | 95 | 33 | 1 | 21 | 115 | 53 | 146 | 5.01e-38 | 141 |
| MS.gene019282.t1 | AT5G03720 | 64.211 | 95 | 33 | 1 | 21 | 115 | 53 | 146 | 5.01e-38 | 141 |
| MS.gene019282.t1 | AT3G51910 | 60.215 | 93 | 37 | 0 | 22 | 114 | 27 | 119 | 1.07e-37 | 137 |
| MS.gene019282.t1 | AT5G54070 | 60.638 | 94 | 37 | 0 | 21 | 114 | 68 | 161 | 1.07e-37 | 138 |
| MS.gene019282.t1 | AT3G24520 | 65.217 | 92 | 32 | 0 | 24 | 115 | 17 | 108 | 1.14e-36 | 135 |
| MS.gene019282.t1 | AT4G18880 | 58.824 | 119 | 46 | 2 | 17 | 135 | 9 | 124 | 3.02e-35 | 133 |
| MS.gene019282.t1 | AT5G45710 | 58.621 | 116 | 44 | 3 | 20 | 135 | 10 | 121 | 1.23e-34 | 130 |
| MS.gene019282.t1 | AT5G45710 | 58.621 | 116 | 44 | 3 | 20 | 135 | 10 | 121 | 1.23e-34 | 130 |
| MS.gene019282.t1 | AT1G67970 | 60.215 | 93 | 36 | 1 | 24 | 115 | 19 | 111 | 9.89e-34 | 129 |
| MS.gene019282.t1 | AT4G18870 | 45.263 | 95 | 49 | 1 | 20 | 111 | 139 | 233 | 1.07e-22 | 97.1 |
| MS.gene019282.t1 | AT4G18870 | 47.191 | 89 | 42 | 3 | 25 | 111 | 14 | 99 | 3.48e-20 | 90.1 |
| MS.gene019282.t1 | AT1G77570 | 39.326 | 89 | 49 | 3 | 25 | 109 | 27 | 114 | 2.99e-13 | 67.0 |
Find 91 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATGTTCCTAAGCTGTTT+GGG | 0.212139 | 5.4:+4926073 | MS.gene019282:CDS |
| TGTAACAGAAGGGAAAATTT+TGG | 0.225929 | 5.4:+4925930 | MS.gene019282:CDS |
| GCTAATGAAACATTCCTTAT+AGG | 0.235307 | 5.4:-4925961 | None:intergenic |
| GTGTTTATTTCTAGGGATTT+CGG | 0.268121 | 5.4:+4925449 | MS.gene019282:intron |
| AAGCTGTTTGGGGTTTCAAT+TGG | 0.272470 | 5.4:+4926084 | MS.gene019282:CDS |
| CCTCATGTTCCTAAGCTGTT+TGG | 0.282001 | 5.4:+4926072 | MS.gene019282:CDS |
| ATGATGAGTAATTATGCTTC+TGG | 0.326687 | 5.4:+4925853 | MS.gene019282:CDS |
| ATGGAACAAGCTTCATAGTT+TGG | 0.332696 | 5.4:+4925245 | MS.gene019282:CDS |
| CCGTTGATGATTTGGTTTCA+TGG | 0.341139 | 5.4:+4925215 | MS.gene019282:CDS |
| ATTGAGTTGACGAACGAAAC+TGG | 0.358502 | 5.4:-4925326 | None:intergenic |
| ATGGTGTCTCCAGCAACTTC+TGG | 0.358649 | 5.4:+4925643 | MS.gene019282:CDS |
| TGATTCTTCCGTTGATGATT+TGG | 0.364300 | 5.4:+4925207 | MS.gene019282:CDS |
| GAAGTTGATGGCGACATTAC+CGG | 0.375837 | 5.4:+4925099 | None:intergenic |
| AGCTGTTTGGGGTTTCAATT+GGG | 0.377393 | 5.4:+4926085 | MS.gene019282:CDS |
| AGCAACTTCTGGTGATGAAC+AGG | 0.397317 | 5.4:+4925654 | MS.gene019282:CDS |
| TTATTGTGTTTGAAATACTT+TGG | 0.401377 | 5.4:-4925298 | None:intergenic |
| TGCTGCGACGGCACGGGGCG+TGG | 0.405775 | 5.4:+4925906 | MS.gene019282:CDS |
| CTTAATGTGGGTGGAGCTGC+TGG | 0.418056 | 5.4:+4926000 | MS.gene019282:CDS |
| TACGAGTGCTGCGACGGCAC+GGG | 0.438079 | 5.4:+4925900 | MS.gene019282:CDS |
| GACGGAGAATGAGGTTGAAC+CGG | 0.444512 | 5.4:+4926122 | MS.gene019282:CDS |
| ACATGAGGTGCCTCAACCTC+TGG | 0.453623 | 5.4:-4926057 | None:intergenic |
| CGGATGATCAAGAGCGTCGT+TGG | 0.460641 | 5.4:+4926274 | MS.gene019282:CDS |
| ATGTGAGACGACGAGTTTGA+TGG | 0.466931 | 5.4:+4926032 | MS.gene019282:CDS |
| GCCATAGCTGTTCCTGCTGC+CGG | 0.467534 | 5.4:-4925565 | None:intergenic |
| TTGGTTTCATGGAATGAAGA+TGG | 0.472004 | 5.4:+4925226 | MS.gene019282:CDS |
| TGTTCATCACCAGAAGTTGC+TGG | 0.476217 | 5.4:-4925652 | None:intergenic |
| GCACCATTGTTCACCGCAAT+CGG | 0.477786 | 5.4:-4925697 | None:intergenic |
| GATTCACCTGTTTGCTCCAC+CGG | 0.494684 | 5.4:-4925118 | None:intergenic |
| ACATTACCGGTGGAGCAAAC+AGG | 0.498008 | 5.4:+4925112 | MS.gene019282:CDS |
| TGAACCGGAGAGAGAGGAAC+GGG | 0.498202 | 5.4:+4926137 | MS.gene019282:CDS |
| GCTGGAGACACCATTCTAAC+CGG | 0.500615 | 5.4:-4925634 | None:intergenic |
| GTTGGAAATTGACGAAATAG+TGG | 0.503816 | 5.4:+4926292 | MS.gene019282:CDS |
| GTCGAATTCATCTCCGATTG+CGG | 0.505685 | 5.4:+4925684 | MS.gene019282:CDS |
| ATTGAAACCCCAAACAGCTT+AGG | 0.506033 | 5.4:-4926081 | None:intergenic |
| CAATTGGGCTTAAACGATGT+AGG | 0.509913 | 5.4:+4926100 | MS.gene019282:CDS |
| TTAGCAAATTCCCACCGGTC+AGG | 0.510367 | 5.4:-4925481 | None:intergenic |
| TCATTCTCTTCAACTAACTC+CGG | 0.512986 | 5.4:-4925754 | None:intergenic |
| TTCGGAAAGTTGTACCTGAC+CGG | 0.514506 | 5.4:+4925467 | MS.gene019282:CDS |
| CTACGAGTGCTGCGACGGCA+CGG | 0.515613 | 5.4:+4925899 | MS.gene019282:CDS |
| ATCTTCTACGAGTGCTGCGA+CGG | 0.517274 | 5.4:+4925894 | MS.gene019282:CDS |
| TGTTCCCGTTCCTCTCTCTC+CGG | 0.518493 | 5.4:-4926141 | None:intergenic |
| TATGGCGGCACCGGTTAGAA+TGG | 0.532149 | 5.4:+4925624 | MS.gene019282:CDS |
| TCATGTTCCTAAGCTGTTTG+GGG | 0.536796 | 5.4:+4926074 | MS.gene019282:CDS |
| AACAGTAGCTATGGCGGCAC+CGG | 0.542259 | 5.4:+4925615 | MS.gene019282:CDS |
| TGAGGTTGAACCGGAGAGAG+AGG | 0.546548 | 5.4:+4926131 | MS.gene019282:CDS |
| CATGAGTTGCACCACTGCGC+CGG | 0.546633 | 5.4:+4925735 | MS.gene019282:CDS |
| CGGTGGGAATTTGCTAATGA+CGG | 0.547176 | 5.4:+4925487 | MS.gene019282:CDS |
| GGTGGAGCAAACAGGTGAAT+CGG | 0.547365 | 5.4:+4925120 | MS.gene019282:CDS |
| GCCGGCAGCAGGAACAGCTA+TGG | 0.547975 | 5.4:+4925564 | MS.gene019282:CDS |
| TAATACTGTAACAGTAGCTA+TGG | 0.548334 | 5.4:+4925606 | MS.gene019282:CDS |
| ACGATGTAGGACGGAGAATG+AGG | 0.556638 | 5.4:+4926113 | MS.gene019282:CDS |
| ACGAGTGCTGCGACGGCACG+GGG | 0.561173 | 5.4:+4925901 | MS.gene019282:CDS |
| TTTGATGGAACCAGAGGTTG+AGG | 0.561367 | 5.4:+4926047 | MS.gene019282:CDS |
| AAATCTCTAGCAAATTCAGC+AGG | 0.569125 | 5.4:-4925271 | None:intergenic |
| TGGTGATGGTGATGGTGACT+CGG | 0.574712 | 5.4:+4926254 | MS.gene019282:CDS |
| TCTCCGATTGCGGTGAACAA+TGG | 0.579507 | 5.4:+4925694 | MS.gene019282:CDS |
| CGGGGCGTGGTTGTAACAGA+AGG | 0.579523 | 5.4:+4925919 | MS.gene019282:CDS |
| AACAGGTGAATCGGCGACGG+CGG | 0.583900 | 5.4:+4925129 | MS.gene019282:CDS |
| AATGAGCTAAGTCAATTGAA+AGG | 0.584859 | 5.4:+4925808 | MS.gene019282:CDS |
| AAGGAATGTTTCATTAGCTG+AGG | 0.585509 | 5.4:+4925966 | MS.gene019282:CDS |
| CCTCGTGATGGTGATGGTGA+TGG | 0.588325 | 5.4:+4926246 | MS.gene019282:CDS |
| ATCAAACTCGTCGTCTCACA+TGG | 0.592517 | 5.4:-4926030 | None:intergenic |
| GCAAACAGGTGAATCGGCGA+CGG | 0.608757 | 5.4:+4925126 | MS.gene019282:CDS |
| AACTTCTGGTGATGAACAGG+TGG | 0.612326 | 5.4:+4925657 | MS.gene019282:CDS |
| AGTTAGTTGAAGAGAATGAA+AGG | 0.612844 | 5.4:+4925758 | MS.gene019282:CDS |
| CCATGAAACCAAATCATCAA+CGG | 0.613347 | 5.4:-4925215 | None:intergenic |
| GGAAAGTTGTACCTGACCGG+TGG | 0.614886 | 5.4:+4925470 | MS.gene019282:CDS |
| TCTGAACCTCGTGATGGTGA+TGG | 0.617342 | 5.4:+4926240 | MS.gene019282:CDS |
| ATTTGCTTCGAGATATTCAG+CGG | 0.621869 | 5.4:+4925530 | MS.gene019282:CDS |
| TTCAACTAACTCCGGCGCAG+TGG | 0.622278 | 5.4:-4925746 | None:intergenic |
| GATGCAAACACAATCCTCGC+AGG | 0.623759 | 5.4:+4926191 | MS.gene019282:CDS |
| GCAGGAGACTGATCGAGGAT+CGG | 0.626303 | 5.4:+4926209 | MS.gene019282:CDS |
| TCCTCGCAGGAGACTGATCG+AGG | 0.628520 | 5.4:+4926204 | MS.gene019282:CDS |
| GAAAGTTGTACCTGACCGGT+GGG | 0.631205 | 5.4:+4925471 | MS.gene019282:CDS |
| TACTGTAACAGTAGCTATGG+CGG | 0.634074 | 5.4:+4925609 | MS.gene019282:CDS |
| AATGTGGGTGGAGCTGCTGG+CGG | 0.634893 | 5.4:+4926003 | MS.gene019282:CDS |
| GGAAAATGTAGTGCTTAATG+TGG | 0.635559 | 5.4:+4925987 | MS.gene019282:CDS |
| TTGAACCGGAGAGAGAGGAA+CGG | 0.637385 | 5.4:+4926136 | MS.gene019282:CDS |
| AATGTAGTGCTTAATGTGGG+TGG | 0.639772 | 5.4:+4925991 | MS.gene019282:CDS |
| GAAAATGTAGTGCTTAATGT+GGG | 0.644997 | 5.4:+4925988 | MS.gene019282:CDS |
| CGTCATTAGCAAATTCCCAC+CGG | 0.646656 | 5.4:-4925486 | None:intergenic |
| GACGAGTTTGATGGAACCAG+AGG | 0.648812 | 5.4:+4926041 | MS.gene019282:CDS |
| CCAAACAGCTTAGGAACATG+AGG | 0.651312 | 5.4:-4926072 | None:intergenic |
| TGGGCTTAAACGATGTAGGA+CGG | 0.657843 | 5.4:+4926104 | MS.gene019282:CDS |
| TCCTCGATCAGTCTCCTGCG+AGG | 0.667916 | 5.4:-4926205 | None:intergenic |
| AGGAACAGCTATGGCGACAG+CGG | 0.668564 | 5.4:+4925573 | MS.gene019282:CDS |
| GGGGCGTGGTTGTAACAGAA+GGG | 0.668865 | 5.4:+4925920 | MS.gene019282:CDS |
| GTTGATGGCGACATTACCGG+TGG | 0.679162 | 5.4:+4925102 | None:intergenic |
| GCTAATGACGGATTTCGACG+AGG | 0.685443 | 5.4:+4925499 | MS.gene019282:CDS |
| GTGAAATCTGAACCTCGTGA+TGG | 0.700758 | 5.4:+4926234 | MS.gene019282:CDS |
| CCATCACCATCACCATCACG+AGG | 0.701913 | 5.4:-4926246 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGAAAGTAAAACAAA+AGG | - | chr5.4:4925403-4925422 | None:intergenic | 15.0% |
| !!! | AAATTTTGTGTTTATTTCTA+GGG | + | chr5.4:4925442-4925461 | MS.gene019282:intron | 15.0% |
| !!! | TAAATTTTGTGTTTATTTCT+AGG | + | chr5.4:4925441-4925460 | MS.gene019282:intron | 15.0% |
| !!! | TTTGTTTTACTTTCTTTTTT+AGG | + | chr5.4:4925403-4925422 | MS.gene019282:intron | 15.0% |
| !!! | TTATTGTGTTTGAAATACTT+TGG | - | chr5.4:4925301-4925320 | None:intergenic | 20.0% |
| AATGAGCTAAGTCAATTGAA+AGG | + | chr5.4:4925808-4925827 | MS.gene019282:CDS | 30.0% | |
| AGTTAGTTGAAGAGAATGAA+AGG | + | chr5.4:4925758-4925777 | MS.gene019282:CDS | 30.0% | |
| ATGATGAGTAATTATGCTTC+TGG | + | chr5.4:4925853-4925872 | MS.gene019282:CDS | 30.0% | |
| GAAAATGTAGTGCTTAATGT+GGG | + | chr5.4:4925988-4926007 | MS.gene019282:CDS | 30.0% | |
| GCTAATGAAACATTCCTTAT+AGG | - | chr5.4:4925964-4925983 | None:intergenic | 30.0% | |
| TAATACTGTAACAGTAGCTA+TGG | + | chr5.4:4925606-4925625 | MS.gene019282:CDS | 30.0% | |
| ! | TGTAACAGAAGGGAAAATTT+TGG | + | chr5.4:4925930-4925949 | MS.gene019282:CDS | 30.0% |
| ! | TTTTGGATCTTTTGCCTATA+AGG | + | chr5.4:4925947-4925966 | MS.gene019282:CDS | 30.0% |
| !! | GTGTTTATTTCTAGGGATTT+CGG | + | chr5.4:4925449-4925468 | MS.gene019282:intron | 30.0% |
| AAATCTCTAGCAAATTCAGC+AGG | - | chr5.4:4925274-4925293 | None:intergenic | 35.0% | |
| AAGGAATGTTTCATTAGCTG+AGG | + | chr5.4:4925966-4925985 | MS.gene019282:CDS | 35.0% | |
| ATGGAACAAGCTTCATAGTT+TGG | + | chr5.4:4925245-4925264 | MS.gene019282:CDS | 35.0% | |
| ATTTGCTTCGAGATATTCAG+CGG | + | chr5.4:4925530-4925549 | MS.gene019282:CDS | 35.0% | |
| CCATGAAACCAAATCATCAA+CGG | - | chr5.4:4925218-4925237 | None:intergenic | 35.0% | |
| GGAAAATGTAGTGCTTAATG+TGG | + | chr5.4:4925987-4926006 | MS.gene019282:CDS | 35.0% | |
| TCATTCTCTTCAACTAACTC+CGG | - | chr5.4:4925757-4925776 | None:intergenic | 35.0% | |
| TTGGTTTCATGGAATGAAGA+TGG | + | chr5.4:4925226-4925245 | MS.gene019282:CDS | 35.0% | |
| ! | TGATACGTTTTCGTCAGAAA+CGG | - | chr5.4:4925178-4925197 | None:intergenic | 35.0% |
| !! | TGATTCTTCCGTTGATGATT+TGG | + | chr5.4:4925207-4925226 | MS.gene019282:CDS | 35.0% |
| AATGTAGTGCTTAATGTGGG+TGG | + | chr5.4:4925991-4926010 | MS.gene019282:CDS | 40.0% | |
| ATTGAAACCCCAAACAGCTT+AGG | - | chr5.4:4926084-4926103 | None:intergenic | 40.0% | |
| CAATTGGGCTTAAACGATGT+AGG | + | chr5.4:4926100-4926119 | MS.gene019282:CDS | 40.0% | |
| CTCATGTTCCTAAGCTGTTT+GGG | + | chr5.4:4926073-4926092 | MS.gene019282:CDS | 40.0% | |
| TACTGTAACAGTAGCTATGG+CGG | + | chr5.4:4925609-4925628 | MS.gene019282:CDS | 40.0% | |
| TCAGCGGAGAAAAATATTGC+CGG | + | chr5.4:4925546-4925565 | MS.gene019282:CDS | 40.0% | |
| TCATGTTCCTAAGCTGTTTG+GGG | + | chr5.4:4926074-4926093 | MS.gene019282:CDS | 40.0% | |
| ! | AAGCTGTTTGGGGTTTCAAT+TGG | + | chr5.4:4926084-4926103 | MS.gene019282:CDS | 40.0% |
| ! | AGCTGTTTGGGGTTTCAATT+GGG | + | chr5.4:4926085-4926104 | MS.gene019282:CDS | 40.0% |
| !! | ATTGAGTTGACGAACGAAAC+TGG | - | chr5.4:4925329-4925348 | None:intergenic | 40.0% |
| !! | CCGTTGATGATTTGGTTTCA+TGG | + | chr5.4:4925215-4925234 | MS.gene019282:CDS | 40.0% |
| AGAAAAATATTGCCGGCAGC+AGG | + | chr5.4:4925553-4925572 | MS.gene019282:CDS | 45.0% | |
| ATCAAACTCGTCGTCTCACA+TGG | - | chr5.4:4926033-4926052 | None:intergenic | 45.0% | |
| ATGTGAGACGACGAGTTTGA+TGG | + | chr5.4:4926032-4926051 | MS.gene019282:CDS | 45.0% | |
| CCAAACAGCTTAGGAACATG+AGG | - | chr5.4:4926075-4926094 | None:intergenic | 45.0% | |
| CCTCATGTTCCTAAGCTGTT+TGG | + | chr5.4:4926072-4926091 | MS.gene019282:CDS | 45.0% | |
| CGTCATTAGCAAATTCCCAC+CGG | - | chr5.4:4925489-4925508 | None:intergenic | 45.0% | |
| GTCGAATTCATCTCCGATTG+CGG | + | chr5.4:4925684-4925703 | MS.gene019282:CDS | 45.0% | |
| GTGAAATCTGAACCTCGTGA+TGG | + | chr5.4:4926234-4926253 | MS.gene019282:CDS | 45.0% | |
| TGGGCTTAAACGATGTAGGA+CGG | + | chr5.4:4926104-4926123 | MS.gene019282:CDS | 45.0% | |
| TGTTCATCACCAGAAGTTGC+TGG | - | chr5.4:4925655-4925674 | None:intergenic | 45.0% | |
| TTCGGAAAGTTGTACCTGAC+CGG | + | chr5.4:4925467-4925486 | MS.gene019282:CDS | 45.0% | |
| TTTGATGGAACCAGAGGTTG+AGG | + | chr5.4:4926047-4926066 | MS.gene019282:CDS | 45.0% | |
| ! | AACTTCTGGTGATGAACAGG+TGG | + | chr5.4:4925657-4925676 | MS.gene019282:CDS | 45.0% |
| ! | AGCAACTTCTGGTGATGAAC+AGG | + | chr5.4:4925654-4925673 | MS.gene019282:CDS | 45.0% |
| !! | CGGTGGGAATTTGCTAATGA+CGG | + | chr5.4:4925487-4925506 | MS.gene019282:CDS | 45.0% |
| ACATTACCGGTGGAGCAAAC+AGG | + | chr5.4:4925112-4925131 | MS.gene019282:CDS | 50.0% | |
| ACGATGTAGGACGGAGAATG+AGG | + | chr5.4:4926113-4926132 | MS.gene019282:CDS | 50.0% | |
| ATGGTGTCTCCAGCAACTTC+TGG | + | chr5.4:4925643-4925662 | MS.gene019282:CDS | 50.0% | |
| GAAAGTTGTACCTGACCGGT+GGG | + | chr5.4:4925471-4925490 | MS.gene019282:CDS | 50.0% | |
| GACGAGTTTGATGGAACCAG+AGG | + | chr5.4:4926041-4926060 | MS.gene019282:CDS | 50.0% | |
| GACGGAGAATGAGGTTGAAC+CGG | + | chr5.4:4926122-4926141 | MS.gene019282:CDS | 50.0% | |
| GATGCAAACACAATCCTCGC+AGG | + | chr5.4:4926191-4926210 | MS.gene019282:CDS | 50.0% | |
| GATTCACCTGTTTGCTCCAC+CGG | - | chr5.4:4925121-4925140 | None:intergenic | 50.0% | |
| GCACCATTGTTCACCGCAAT+CGG | - | chr5.4:4925700-4925719 | None:intergenic | 50.0% | |
| GCTGGAGACACCATTCTAAC+CGG | - | chr5.4:4925637-4925656 | None:intergenic | 50.0% | |
| GGTGGAGCAAACAGGTGAAT+CGG | + | chr5.4:4925120-4925139 | MS.gene019282:CDS | 50.0% | |
| TCTCCGATTGCGGTGAACAA+TGG | + | chr5.4:4925694-4925713 | MS.gene019282:CDS | 50.0% | |
| TTAGCAAATTCCCACCGGTC+AGG | - | chr5.4:4925484-4925503 | None:intergenic | 50.0% | |
| TTGAACCGGAGAGAGAGGAA+CGG | + | chr5.4:4926136-4926155 | MS.gene019282:CDS | 50.0% | |
| ! | ATCTTCTACGAGTGCTGCGA+CGG | + | chr5.4:4925894-4925913 | MS.gene019282:CDS | 50.0% |
| ! | GTTTTCGTCAGAAACGGCGT+CGG | - | chr5.4:4925172-4925191 | None:intergenic | 50.0% |
| ! | TCTGAACCTCGTGATGGTGA+TGG | + | chr5.4:4926240-4926259 | MS.gene019282:CDS | 50.0% |
| !! | GCTAATGACGGATTTCGACG+AGG | + | chr5.4:4925499-4925518 | MS.gene019282:CDS | 50.0% |
| !! | TGGTGATGGTGATGGTGACT+CGG | + | chr5.4:4926254-4926273 | MS.gene019282:CDS | 50.0% |
| AACAGTAGCTATGGCGGCAC+CGG | + | chr5.4:4925615-4925634 | MS.gene019282:CDS | 55.0% | |
| AGGAACAGCTATGGCGACAG+CGG | + | chr5.4:4925573-4925592 | MS.gene019282:CDS | 55.0% | |
| CCATCACCATCACCATCACG+AGG | - | chr5.4:4926249-4926268 | None:intergenic | 55.0% | |
| CTTAATGTGGGTGGAGCTGC+TGG | + | chr5.4:4926000-4926019 | MS.gene019282:CDS | 55.0% | |
| GCAAACAGGTGAATCGGCGA+CGG | + | chr5.4:4925126-4925145 | MS.gene019282:CDS | 55.0% | |
| GCAGGAGACTGATCGAGGAT+CGG | + | chr5.4:4926209-4926228 | MS.gene019282:CDS | 55.0% | |
| GGAAAGTTGTACCTGACCGG+TGG | + | chr5.4:4925470-4925489 | MS.gene019282:CDS | 55.0% | |
| GGGGCGTGGTTGTAACAGAA+GGG | + | chr5.4:4925920-4925939 | MS.gene019282:CDS | 55.0% | |
| TGAACCGGAGAGAGAGGAAC+GGG | + | chr5.4:4926137-4926156 | MS.gene019282:CDS | 55.0% | |
| TGAGGTTGAACCGGAGAGAG+AGG | + | chr5.4:4926131-4926150 | MS.gene019282:CDS | 55.0% | |
| TGTTCCCGTTCCTCTCTCTC+CGG | - | chr5.4:4926144-4926163 | None:intergenic | 55.0% | |
| TTCAACTAACTCCGGCGCAG+TGG | - | chr5.4:4925749-4925768 | None:intergenic | 55.0% | |
| ! | ACATGAGGTGCCTCAACCTC+TGG | - | chr5.4:4926060-4926079 | None:intergenic | 55.0% |
| !! | CCTCGTGATGGTGATGGTGA+TGG | + | chr5.4:4926246-4926265 | MS.gene019282:CDS | 55.0% |
| !! | CGGATGATCAAGAGCGTCGT+TGG | + | chr5.4:4926274-4926293 | MS.gene019282:CDS | 55.0% |
| !! | TATGGCGGCACCGGTTAGAA+TGG | + | chr5.4:4925624-4925643 | MS.gene019282:CDS | 55.0% |
| AACAGGTGAATCGGCGACGG+CGG | + | chr5.4:4925129-4925148 | MS.gene019282:CDS | 60.0% | |
| AATGTGGGTGGAGCTGCTGG+CGG | + | chr5.4:4926003-4926022 | MS.gene019282:CDS | 60.0% | |
| CATGAGTTGCACCACTGCGC+CGG | + | chr5.4:4925735-4925754 | MS.gene019282:CDS | 60.0% | |
| CGGGGCGTGGTTGTAACAGA+AGG | + | chr5.4:4925919-4925938 | MS.gene019282:CDS | 60.0% | |
| GCCATAGCTGTTCCTGCTGC+CGG | - | chr5.4:4925568-4925587 | None:intergenic | 60.0% | |
| TCCTCGATCAGTCTCCTGCG+AGG | - | chr5.4:4926208-4926227 | None:intergenic | 60.0% | |
| TCCTCGCAGGAGACTGATCG+AGG | + | chr5.4:4926204-4926223 | MS.gene019282:CDS | 60.0% | |
| GCCGGCAGCAGGAACAGCTA+TGG | + | chr5.4:4925564-4925583 | MS.gene019282:CDS | 65.0% | |
| ! | CTACGAGTGCTGCGACGGCA+CGG | + | chr5.4:4925899-4925918 | MS.gene019282:CDS | 65.0% |
| ! | TACGAGTGCTGCGACGGCAC+GGG | + | chr5.4:4925900-4925919 | MS.gene019282:CDS | 65.0% |
| ! | ACGAGTGCTGCGACGGCACG+GGG | + | chr5.4:4925901-4925920 | MS.gene019282:CDS | 70.0% |
| ! | TGCTGCGACGGCACGGGGCG+TGG | + | chr5.4:4925906-4925925 | MS.gene019282:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 4925106 | 4926311 | 4925106 | ID=MS.gene019282 |
| chr5.4 | mRNA | 4925106 | 4926311 | 4925106 | ID=MS.gene019282.t1;Parent=MS.gene019282 |
| chr5.4 | exon | 4925106 | 4925354 | 4925106 | ID=MS.gene019282.t1.exon1;Parent=MS.gene019282.t1 |
| chr5.4 | CDS | 4925106 | 4925354 | 4925106 | ID=cds.MS.gene019282.t1;Parent=MS.gene019282.t1 |
| chr5.4 | exon | 4925463 | 4926311 | 4925463 | ID=MS.gene019282.t1.exon2;Parent=MS.gene019282.t1 |
| chr5.4 | CDS | 4925463 | 4926311 | 4925463 | ID=cds.MS.gene019282.t1;Parent=MS.gene019282.t1 |
| Gene Sequence |
| Protein sequence |
