Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019316.t1 | XP_003611074.1 | 90.9 | 252 | 21 | 2 | 1 | 251 | 1 | 251 | 5.90E-123 | 450.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019316.t1 | G7KC16 | 90.9 | 252 | 21 | 2 | 1 | 251 | 1 | 251 | 4.3e-123 | 450.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene019316.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019316.t1 | MTR_5g010120 | 90.873 | 252 | 21 | 2 | 1 | 251 | 1 | 251 | 1.22e-160 | 445 |
| MS.gene019316.t1 | MTR_8g098725 | 49.010 | 202 | 70 | 5 | 65 | 240 | 97 | 291 | 2.84e-53 | 175 |
| MS.gene019316.t1 | MTR_8g098725 | 47.087 | 206 | 72 | 5 | 65 | 240 | 97 | 295 | 2.31e-51 | 170 |
| MS.gene019316.t1 | MTR_2g068730 | 54.545 | 88 | 37 | 1 | 148 | 232 | 136 | 223 | 2.79e-22 | 92.8 |
| MS.gene019316.t1 | MTR_1g044785 | 49.425 | 87 | 39 | 1 | 150 | 236 | 112 | 193 | 2.95e-19 | 84.0 |
| MS.gene019316.t1 | MTR_2g096080 | 40.870 | 115 | 46 | 2 | 129 | 221 | 90 | 204 | 6.87e-19 | 83.2 |
| MS.gene019316.t1 | MTR_1g073350 | 55.556 | 72 | 32 | 0 | 144 | 215 | 288 | 359 | 8.03e-19 | 85.1 |
| MS.gene019316.t1 | MTR_4g061823 | 36.242 | 149 | 67 | 4 | 89 | 221 | 58 | 194 | 2.11e-16 | 76.3 |
| MS.gene019316.t1 | MTR_4g061910 | 36.242 | 149 | 67 | 4 | 89 | 221 | 58 | 194 | 2.11e-16 | 76.3 |
| MS.gene019316.t1 | MTR_1g008220 | 47.126 | 87 | 39 | 2 | 138 | 220 | 194 | 277 | 3.50e-16 | 76.3 |
| MS.gene019316.t1 | MTR_3g091340 | 34.328 | 134 | 72 | 3 | 104 | 222 | 119 | 251 | 1.34e-14 | 71.6 |
| MS.gene019316.t1 | MTR_3g091340 | 34.328 | 134 | 72 | 3 | 104 | 222 | 112 | 244 | 1.37e-14 | 71.6 |
| MS.gene019316.t1 | MTR_3g091340 | 34.328 | 134 | 72 | 3 | 104 | 222 | 148 | 280 | 1.70e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019316.t1 | AT5G41380 | 47.826 | 184 | 74 | 6 | 58 | 221 | 83 | 264 | 1.39e-39 | 139 |
| MS.gene019316.t1 | AT1G63820 | 48.684 | 152 | 55 | 5 | 117 | 248 | 117 | 265 | 1.41e-34 | 125 |
| MS.gene019316.t1 | AT3G12890 | 51.546 | 97 | 44 | 2 | 154 | 250 | 121 | 214 | 1.33e-21 | 90.9 |
| MS.gene019316.t1 | AT1G04500 | 33.484 | 221 | 107 | 8 | 34 | 234 | 137 | 337 | 5.24e-20 | 88.2 |
| MS.gene019316.t1 | AT1G04500 | 33.484 | 221 | 107 | 8 | 34 | 234 | 146 | 346 | 6.08e-20 | 88.2 |
| MS.gene019316.t1 | AT1G04500 | 33.484 | 221 | 107 | 8 | 34 | 234 | 146 | 346 | 6.08e-20 | 88.2 |
| MS.gene019316.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 301 | 357 | 6.16e-18 | 82.8 |
| MS.gene019316.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 302 | 358 | 6.55e-18 | 82.8 |
| MS.gene019316.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 290 | 346 | 7.28e-18 | 82.4 |
| MS.gene019316.t1 | AT2G33350 | 66.667 | 57 | 19 | 0 | 163 | 219 | 310 | 366 | 7.63e-18 | 82.4 |
| MS.gene019316.t1 | AT4G27900 | 47.191 | 89 | 38 | 3 | 138 | 222 | 178 | 261 | 2.24e-15 | 73.9 |
| MS.gene019316.t1 | AT4G27900 | 47.191 | 89 | 38 | 3 | 138 | 222 | 178 | 261 | 2.24e-15 | 73.9 |
| MS.gene019316.t1 | AT5G53420 | 43.182 | 88 | 48 | 2 | 129 | 216 | 177 | 262 | 1.40e-14 | 71.6 |
| MS.gene019316.t1 | AT5G53420 | 43.182 | 88 | 48 | 2 | 129 | 216 | 98 | 183 | 1.96e-14 | 70.1 |
| MS.gene019316.t1 | AT5G53420 | 43.182 | 88 | 48 | 2 | 129 | 216 | 98 | 183 | 1.96e-14 | 70.1 |
| MS.gene019316.t1 | AT5G53420 | 43.182 | 88 | 48 | 2 | 129 | 216 | 98 | 183 | 1.96e-14 | 70.1 |
| MS.gene019316.t1 | AT5G59990 | 42.241 | 116 | 57 | 3 | 136 | 243 | 119 | 232 | 1.99e-13 | 68.2 |
Find 55 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCATGCCATTGGAAATT+TGG | 0.108434 | 5.4:-4531211 | None:intergenic |
| TGTTTGGGCTTGAATGTTTA+TGG | 0.196449 | 5.4:-4530898 | None:intergenic |
| ATTCATGCCATTGGAAATTT+GGG | 0.264246 | 5.4:-4531210 | None:intergenic |
| ATCATCATGAAGACGAGTTC+TGG | 0.270661 | 5.4:+4532086 | MS.gene019316:CDS |
| CAAAGTAGGGCGTTACAATT+TGG | 0.279002 | 5.4:+4531564 | MS.gene019316:CDS |
| GGATCATAAGAGACTTTGTT+TGG | 0.295719 | 5.4:-4530914 | None:intergenic |
| AGCTCCTCTGCATTAACTTT+TGG | 0.308354 | 5.4:-4531117 | None:intergenic |
| GGAAATTTCTCTACTTTGGA+TGG | 0.338370 | 5.4:+4531043 | MS.gene019316:CDS |
| GAACTTCCTCCGGCTTCTCT+TGG | 0.364020 | 5.4:-4531620 | None:intergenic |
| GCTTGGAAATTTCTCTACTT+TGG | 0.370290 | 5.4:+4531039 | MS.gene019316:CDS |
| GTGCAGGGCAGGAGATTTGC+AGG | 0.386511 | 5.4:+4531279 | MS.gene019316:CDS |
| GAAGTTCAACAAGATTATTA+AGG | 0.398859 | 5.4:+4531636 | MS.gene019316:CDS |
| GCACGCCCTTCTTATTTGTC+CGG | 0.412364 | 5.4:-4531260 | None:intergenic |
| GACAAATAAGAAGGGCGTGC+AGG | 0.414492 | 5.4:+4531263 | MS.gene019316:CDS |
| GATTGTCGGCTAGTGTCTTT+CGG | 0.419573 | 5.4:-4531982 | None:intergenic |
| TAAGCTTCAGAAGGAAAATC+AGG | 0.424848 | 5.4:-4531166 | None:intergenic |
| ATTTAGGTTGATTTCATTGA+AGG | 0.428619 | 5.4:+4532225 | MS.gene019316:intron |
| TAATCTTGTTGAACTTCCTC+CGG | 0.431668 | 5.4:-4531630 | None:intergenic |
| GGGAGTCCATCTGTGTGTTA+TGG | 0.434607 | 5.4:-4531189 | None:intergenic |
| GAAAACTGAGGAATGTCAAA+TGG | 0.438264 | 5.4:+4531075 | MS.gene019316:CDS |
| TGTTGTTGTGATCTTAATAG+AGG | 0.449547 | 5.4:-4532263 | None:intergenic |
| GATCATAAGAGACTTTGTTT+GGG | 0.452048 | 5.4:-4530913 | None:intergenic |
| TCTTCTCCAACCAGTGAGCT+TGG | 0.454671 | 5.4:+4531022 | MS.gene019316:CDS |
| ACGTATGCGTGTTCGATTGT+CGG | 0.459741 | 5.4:-4531996 | None:intergenic |
| GAAATTTCTCTACTTTGGAT+GGG | 0.461348 | 5.4:+4531044 | MS.gene019316:CDS |
| ATAAGAAGGGCGTGCAGGGC+AGG | 0.462306 | 5.4:+4531268 | MS.gene019316:CDS |
| GATGAAGTAAACTTCAAAGT+AGG | 0.477302 | 5.4:+4531550 | MS.gene019316:CDS |
| TCATCATGAAGACGAGTTCT+GGG | 0.484075 | 5.4:+4532087 | MS.gene019316:CDS |
| GATCAGAACATGGCAACACC+TGG | 0.484597 | 5.4:+4531517 | MS.gene019316:intron |
| CTGTTTCAATGTAATTGAAA+GGG | 0.489672 | 5.4:-4530943 | None:intergenic |
| ACTGTTTCAATGTAATTGAA+AGG | 0.489675 | 5.4:-4530944 | None:intergenic |
| TTTAGGTTGATTTCATTGAA+GGG | 0.494868 | 5.4:+4532226 | MS.gene019316:intron |
| GGGAGCTCAATTCATGCCAT+TGG | 0.496254 | 5.4:-4531219 | None:intergenic |
| GGCAACACCTGGGTCTCAAA+CGG | 0.500495 | 5.4:+4531528 | MS.gene019316:CDS |
| GATATAGAGCCAAGAGAAGC+CGG | 0.504164 | 5.4:+4531611 | MS.gene019316:CDS |
| ACTTCATCCGTTTGAGACCC+AGG | 0.512208 | 5.4:-4531535 | None:intergenic |
| TCTTCACCGGACAAATAAGA+AGG | 0.514231 | 5.4:+4531254 | MS.gene019316:CDS |
| AGAGAAATTTCCAAGCTCAC+TGG | 0.521246 | 5.4:-4531032 | None:intergenic |
| ACAAATAAGAAGGGCGTGCA+GGG | 0.523958 | 5.4:+4531264 | MS.gene019316:CDS |
| TTACATTGAAACAGTTCAAG+AGG | 0.525691 | 5.4:+4530952 | MS.gene019316:CDS |
| CCCGAAAATAGTTTCTTCAC+CGG | 0.538362 | 5.4:+4531241 | MS.gene019316:CDS |
| ATGAAGTAAACTTCAAAGTA+GGG | 0.543162 | 5.4:+4531551 | MS.gene019316:CDS |
| AAAACTGAGGAATGTCAAAT+GGG | 0.562447 | 5.4:+4531076 | MS.gene019316:CDS |
| AAATTTCCAAGCTCACTGGT+TGG | 0.575257 | 5.4:-4531028 | None:intergenic |
| ATGTAATTGAAAGGGTAATG+AGG | 0.586254 | 5.4:-4530935 | None:intergenic |
| AGCTTACCATAACACACAGA+TGG | 0.590460 | 5.4:+4531183 | MS.gene019316:CDS |
| TTCATGCCATTGGAAATTTG+GGG | 0.622889 | 5.4:-4531209 | None:intergenic |
| CTTCACCGGACAAATAAGAA+GGG | 0.624611 | 5.4:+4531255 | MS.gene019316:CDS |
| TGGACTCCCCAAATTTCCAA+TGG | 0.637971 | 5.4:+4531203 | MS.gene019316:CDS |
| GTGTTATGGTAAGCTTCAGA+AGG | 0.638279 | 5.4:-4531175 | None:intergenic |
| ATCAGAACATGGCAACACCT+GGG | 0.639682 | 5.4:+4531518 | MS.gene019316:intron |
| GACAATCGAACACGCATACG+TGG | 0.645981 | 5.4:+4531998 | MS.gene019316:CDS |
| TGGGTCTCGTTTGAAAACTG+AGG | 0.669045 | 5.4:+4531063 | MS.gene019316:CDS |
| ACTACCAAAAGTTAATGCAG+AGG | 0.669632 | 5.4:+4531113 | MS.gene019316:CDS |
| ATAGAGCCAAGAGAAGCCGG+AGG | 0.708071 | 5.4:+4531614 | MS.gene019316:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCATTTTTTAAATGTA+GGG | + | chr5.4:4531401-4531420 | MS.gene019316:intron | 10.0% |
| !!! | TTTAATTTTATCTGTATTAA+AGG | + | chr5.4:4531481-4531500 | MS.gene019316:intron | 10.0% |
| !! | ACTAGTAATAAAATAATTGA+AGG | + | chr5.4:4531855-4531874 | MS.gene019316:intron | 15.0% |
| !! | ATGATTAAATTAATACGTAT+CGG | - | chr5.4:4531383-4531402 | None:intergenic | 15.0% |
| !! | ATTTAGAAACAAAAAATATG+TGG | - | chr5.4:4531912-4531931 | None:intergenic | 15.0% |
| !! | TTCAGATTAAAAAATGTATA+TGG | + | chr5.4:4531354-4531373 | MS.gene019316:intron | 15.0% |
| !!! | ATTTTTTGTTTCTAAATATG+TGG | + | chr5.4:4531915-4531934 | MS.gene019316:intron | 15.0% |
| !!! | CATTTTCATTTTTTAAATGT+AGG | + | chr5.4:4531400-4531419 | MS.gene019316:intron | 15.0% |
| !!! | TATTATTGAGGTTTTTATTT+AGG | + | chr5.4:4532209-4532228 | MS.gene019316:intron | 15.0% |
| !! | TCAAATAATAGACATAAACA+CGG | - | chr5.4:4531435-4531454 | None:intergenic | 20.0% |
| !! | TGTATATAACATTATAACAG+TGG | - | chr5.4:4531745-4531764 | None:intergenic | 20.0% |
| !!! | TCTTTTGTTGTTTTTAATTG+TGG | + | chr5.4:4531940-4531959 | MS.gene019316:intron | 20.0% |
| ! | AAAATATATATGGTAAGCCA+CGG | - | chr5.4:4531321-4531340 | None:intergenic | 25.0% |
| ! | ACTGTTTCAATGTAATTGAA+AGG | - | chr5.4:4530947-4530966 | None:intergenic | 25.0% |
| ! | ATGAAGTAAACTTCAAAGTA+GGG | + | chr5.4:4531551-4531570 | MS.gene019316:CDS | 25.0% |
| ! | CTGTTTCAATGTAATTGAAA+GGG | - | chr5.4:4530946-4530965 | None:intergenic | 25.0% |
| ! | GAAGTTCAACAAGATTATTA+AGG | + | chr5.4:4531636-4531655 | MS.gene019316:CDS | 25.0% |
| ! | TGGATGCTCAAAAATATATA+TGG | - | chr5.4:4531331-4531350 | None:intergenic | 25.0% |
| !! | ATGTGGTGTTAATATTATTG+AGG | + | chr5.4:4532197-4532216 | MS.gene019316:intron | 25.0% |
| !! | GTCTATTATTTGATAGTAGA+TGG | + | chr5.4:4531442-4531461 | MS.gene019316:intron | 25.0% |
| !!! | AACATTTTTTTTTACTTCCG+AGG | - | chr5.4:4531782-4531801 | None:intergenic | 25.0% |
| !!! | ACATTTTTTAATCTGAAGTG+TGG | - | chr5.4:4531351-4531370 | None:intergenic | 25.0% |
| !!! | ACATTTTTTTTTACTTCCGA+GGG | - | chr5.4:4531781-4531800 | None:intergenic | 25.0% |
| !!! | ATTTAGGTTGATTTCATTGA+AGG | + | chr5.4:4532225-4532244 | MS.gene019316:intron | 25.0% |
| !!! | TTTAGGTTGATTTCATTGAA+GGG | + | chr5.4:4532226-4532245 | MS.gene019316:intron | 25.0% |
| AAAACTGAGGAATGTCAAAT+GGG | + | chr5.4:4531076-4531095 | MS.gene019316:CDS | 30.0% | |
| AATTCATGCCATTGGAAATT+TGG | - | chr5.4:4531214-4531233 | None:intergenic | 30.0% | |
| AGAAAAAGAAAAGAAGGAAG+AGG | - | chr5.4:4531005-4531024 | None:intergenic | 30.0% | |
| ATGTAATTGAAAGGGTAATG+AGG | - | chr5.4:4530938-4530957 | None:intergenic | 30.0% | |
| ATTCATGCCATTGGAAATTT+GGG | - | chr5.4:4531213-4531232 | None:intergenic | 30.0% | |
| GAAATTTCTCTACTTTGGAT+GGG | + | chr5.4:4531044-4531063 | MS.gene019316:CDS | 30.0% | |
| GATGAAGTAAACTTCAAAGT+AGG | + | chr5.4:4531550-4531569 | MS.gene019316:CDS | 30.0% | |
| GTTTAATACTTGCATCAATG+TGG | + | chr5.4:4532180-4532199 | MS.gene019316:intron | 30.0% | |
| TGGAGAAGAAAAAGAAAAGA+AGG | - | chr5.4:4531011-4531030 | None:intergenic | 30.0% | |
| TTACATTGAAACAGTTCAAG+AGG | + | chr5.4:4530952-4530971 | MS.gene019316:CDS | 30.0% | |
| ! | GATCATAAGAGACTTTGTTT+GGG | - | chr5.4:4530916-4530935 | None:intergenic | 30.0% |
| !!! | TTTTCTGTTTTTGAACACAC+AGG | - | chr5.4:4532064-4532083 | None:intergenic | 30.0% |
| ACAAAAGAAAGTTGTTCCCT+CGG | + | chr5.4:4531762-4531781 | MS.gene019316:intron | 35.0% | |
| ACTACCAAAAGTTAATGCAG+AGG | + | chr5.4:4531113-4531132 | MS.gene019316:CDS | 35.0% | |
| GAAAACTGAGGAATGTCAAA+TGG | + | chr5.4:4531075-4531094 | MS.gene019316:CDS | 35.0% | |
| GCTGTTTATTGATCAGAACA+TGG | + | chr5.4:4531507-4531526 | MS.gene019316:intron | 35.0% | |
| GCTTGGAAATTTCTCTACTT+TGG | + | chr5.4:4531039-4531058 | MS.gene019316:CDS | 35.0% | |
| GGAAATTTCTCTACTTTGGA+TGG | + | chr5.4:4531043-4531062 | MS.gene019316:CDS | 35.0% | |
| GGATCATAAGAGACTTTGTT+TGG | - | chr5.4:4530917-4530936 | None:intergenic | 35.0% | |
| GTTAAAATAACCTAACACCG+TGG | + | chr5.4:4531301-4531320 | MS.gene019316:intron | 35.0% | |
| TAAGCTTCAGAAGGAAAATC+AGG | - | chr5.4:4531169-4531188 | None:intergenic | 35.0% | |
| TAATCTTGTTGAACTTCCTC+CGG | - | chr5.4:4531633-4531652 | None:intergenic | 35.0% | |
| TGTTTGGGCTTGAATGTTTA+TGG | - | chr5.4:4530901-4530920 | None:intergenic | 35.0% | |
| TTCATGCCATTGGAAATTTG+GGG | - | chr5.4:4531212-4531231 | None:intergenic | 35.0% | |
| ! | GTTTTTGAACACACAGGTTT+TGG | - | chr5.4:4532058-4532077 | None:intergenic | 35.0% |
| ! | TCCGGTGAAGAAACTATTTT+CGG | - | chr5.4:4531245-4531264 | None:intergenic | 35.0% |
| !! | CTGCATTAACTTTTGGTAGT+AGG | - | chr5.4:4531113-4531132 | None:intergenic | 35.0% |
| AAATTTCCAAGCTCACTGGT+TGG | - | chr5.4:4531031-4531050 | None:intergenic | 40.0% | |
| ACTGTCCAACATTACCTGAA+AGG | + | chr5.4:4531699-4531718 | MS.gene019316:intron | 40.0% | |
| AGAGAAATTTCCAAGCTCAC+TGG | - | chr5.4:4531035-4531054 | None:intergenic | 40.0% | |
| AGCTTACCATAACACACAGA+TGG | + | chr5.4:4531183-4531202 | MS.gene019316:CDS | 40.0% | |
| AGTTCAGATATACCCCTTTC+AGG | - | chr5.4:4531716-4531735 | None:intergenic | 40.0% | |
| ATCATCATGAAGACGAGTTC+TGG | + | chr5.4:4532086-4532105 | MS.gene019316:CDS | 40.0% | |
| CCCGAAAATAGTTTCTTCAC+CGG | + | chr5.4:4531241-4531260 | MS.gene019316:CDS | 40.0% | |
| CTGTCCAACATTACCTGAAA+GGG | + | chr5.4:4531700-4531719 | MS.gene019316:intron | 40.0% | |
| CTTCACCGGACAAATAAGAA+GGG | + | chr5.4:4531255-4531274 | MS.gene019316:CDS | 40.0% | |
| GTGTTATGGTAAGCTTCAGA+AGG | - | chr5.4:4531178-4531197 | None:intergenic | 40.0% | |
| TCATCATGAAGACGAGTTCT+GGG | + | chr5.4:4532087-4532106 | MS.gene019316:CDS | 40.0% | |
| TCTTCACCGGACAAATAAGA+AGG | + | chr5.4:4531254-4531273 | MS.gene019316:CDS | 40.0% | |
| TGTCCAACATTACCTGAAAG+GGG | + | chr5.4:4531701-4531720 | MS.gene019316:intron | 40.0% | |
| TTCAGGTAATGTTGGACAGT+TGG | - | chr5.4:4531699-4531718 | None:intergenic | 40.0% | |
| ! | AGCTCCTCTGCATTAACTTT+TGG | - | chr5.4:4531120-4531139 | None:intergenic | 40.0% |
| ! | ATACCCCTTTCAGGTAATGT+TGG | - | chr5.4:4531707-4531726 | None:intergenic | 40.0% |
| ! | CAAAGTAGGGCGTTACAATT+TGG | + | chr5.4:4531564-4531583 | MS.gene019316:CDS | 40.0% |
| ! | CCGGTGAAGAAACTATTTTC+GGG | - | chr5.4:4531244-4531263 | None:intergenic | 40.0% |
| ! | CGGTGAAGAAACTATTTTCG+GGG | - | chr5.4:4531243-4531262 | None:intergenic | 40.0% |
| ! | GGTGAAGAAACTATTTTCGG+GGG | - | chr5.4:4531242-4531261 | None:intergenic | 40.0% |
| ACGTATGCGTGTTCGATTGT+CGG | - | chr5.4:4531999-4532018 | None:intergenic | 45.0% | |
| ATATGGTAAGCCACGGTGTT+AGG | - | chr5.4:4531314-4531333 | None:intergenic | 45.0% | |
| ATCAGAACATGGCAACACCT+GGG | + | chr5.4:4531518-4531537 | MS.gene019316:intron | 45.0% | |
| GATATAGAGCCAAGAGAAGC+CGG | + | chr5.4:4531611-4531630 | MS.gene019316:CDS | 45.0% | |
| TGGACTCCCCAAATTTCCAA+TGG | + | chr5.4:4531203-4531222 | MS.gene019316:CDS | 45.0% | |
| TGGGTCTCGTTTGAAAACTG+AGG | + | chr5.4:4531063-4531082 | MS.gene019316:CDS | 45.0% | |
| TTTCGGCATGCATACTGTTG+TGG | - | chr5.4:4531968-4531987 | None:intergenic | 45.0% | |
| ! | ACAAATAAGAAGGGCGTGCA+GGG | + | chr5.4:4531264-4531283 | MS.gene019316:CDS | 45.0% |
| ! | GATTGTCGGCTAGTGTCTTT+CGG | - | chr5.4:4531985-4532004 | None:intergenic | 45.0% |
| !!! | CACAGGTTTTGGAATCTCGT+TGG | - | chr5.4:4532047-4532066 | None:intergenic | 45.0% |
| GACAATCGAACACGCATACG+TGG | + | chr5.4:4531998-4532017 | MS.gene019316:CDS | 50.0% | |
| GATCAGAACATGGCAACACC+TGG | + | chr5.4:4531517-4531536 | MS.gene019316:intron | 50.0% | |
| GGGAGCTCAATTCATGCCAT+TGG | - | chr5.4:4531222-4531241 | None:intergenic | 50.0% | |
| GGGAGTCCATCTGTGTGTTA+TGG | - | chr5.4:4531192-4531211 | None:intergenic | 50.0% | |
| TCTTCTCCAACCAGTGAGCT+TGG | + | chr5.4:4531022-4531041 | MS.gene019316:CDS | 50.0% | |
| ! | ACTTCATCCGTTTGAGACCC+AGG | - | chr5.4:4531538-4531557 | None:intergenic | 50.0% |
| ! | GACAAATAAGAAGGGCGTGC+AGG | + | chr5.4:4531263-4531282 | MS.gene019316:CDS | 50.0% |
| ! | GCACGCCCTTCTTATTTGTC+CGG | - | chr5.4:4531263-4531282 | None:intergenic | 50.0% |
| ATAGAGCCAAGAGAAGCCGG+AGG | + | chr5.4:4531614-4531633 | MS.gene019316:CDS | 55.0% | |
| GAACTTCCTCCGGCTTCTCT+TGG | - | chr5.4:4531623-4531642 | None:intergenic | 55.0% | |
| GGCAACACCTGGGTCTCAAA+CGG | + | chr5.4:4531528-4531547 | MS.gene019316:CDS | 55.0% | |
| GTGCAGGGCAGGAGATTTGC+AGG | + | chr5.4:4531279-4531298 | MS.gene019316:CDS | 60.0% | |
| ! | ATAAGAAGGGCGTGCAGGGC+AGG | + | chr5.4:4531268-4531287 | MS.gene019316:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 4530857 | 4532272 | 4530857 | ID=MS.gene019316 |
| chr5.4 | mRNA | 4530857 | 4532272 | 4530857 | ID=MS.gene019316.t1;Parent=MS.gene019316 |
| chr5.4 | exon | 4530857 | 4531300 | 4530857 | ID=MS.gene019316.t1.exon1;Parent=MS.gene019316.t1 |
| chr5.4 | CDS | 4530857 | 4531300 | 4530857 | ID=cds.MS.gene019316.t1;Parent=MS.gene019316.t1 |
| chr5.4 | exon | 4531523 | 4531657 | 4531523 | ID=MS.gene019316.t1.exon2;Parent=MS.gene019316.t1 |
| chr5.4 | CDS | 4531523 | 4531657 | 4531523 | ID=cds.MS.gene019316.t1;Parent=MS.gene019316.t1 |
| chr5.4 | exon | 4531974 | 4532108 | 4531974 | ID=MS.gene019316.t1.exon3;Parent=MS.gene019316.t1 |
| chr5.4 | CDS | 4531974 | 4532108 | 4531974 | ID=cds.MS.gene019316.t1;Parent=MS.gene019316.t1 |
| chr5.4 | exon | 4532231 | 4532272 | 4532231 | ID=MS.gene019316.t1.exon4;Parent=MS.gene019316.t1 |
| chr5.4 | CDS | 4532231 | 4532272 | 4532231 | ID=cds.MS.gene019316.t1;Parent=MS.gene019316.t1 |
| Gene Sequence |
| Protein sequence |
