AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019456


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019456.t1 MTR_8g032710 91.685 457 33 2 1 457 1 452 0.0 855
MS.gene019456.t1 MTR_3g086100 32.046 259 148 8 20 272 15 251 2.10e-28 118
MS.gene019456.t1 MTR_4g121020 32.000 275 154 6 20 287 33 281 2.55e-28 119
MS.gene019456.t1 MTR_4g121020 32.000 275 154 6 20 287 33 281 2.71e-28 119
MS.gene019456.t1 MTR_4g131600 29.921 254 155 5 20 272 22 253 6.03e-26 111
MS.gene019456.t1 MTR_8g079940 29.615 260 151 7 20 272 27 261 6.35e-26 110
MS.gene019456.t1 MTR_1g032570 30.566 265 147 8 20 272 13 252 2.51e-25 109
MS.gene019456.t1 MTR_3g106220 28.906 256 162 6 21 272 11 250 8.86e-25 108
MS.gene019456.t1 MTR_4g131570 27.799 259 165 5 20 275 19 258 4.05e-24 105
MS.gene019456.t1 MTR_2g034960 28.625 269 170 5 20 287 31 278 6.40e-24 105
MS.gene019456.t1 MTR_4g131580 27.907 258 161 6 21 275 20 255 6.31e-23 102
MS.gene019456.t1 MTR_1g013170 28.906 256 158 5 21 272 8 243 9.25e-23 101
MS.gene019456.t1 MTR_1g013180 27.652 264 173 5 21 283 159 405 2.66e-20 94.4
MS.gene019456.t1 MTR_4g021760 28.063 253 136 7 21 272 14 221 4.14e-20 91.3
MS.gene019456.t1 MTR_4g021790 26.415 265 147 8 20 283 12 229 4.17e-18 84.7
MS.gene019456.t1 MTR_3g086100 29.208 202 115 8 77 272 1 180 1.51e-14 76.3
MS.gene019456.t1 MTR_1g032570 27.885 208 113 8 77 272 1 183 1.68e-13 73.2
MS.gene019456.t1 MTR_2g450070 30.252 119 82 1 21 139 21 138 2.60e-13 72.8
MS.gene019456.t1 MTR_2g450070 30.252 119 82 1 21 139 21 138 2.61e-13 72.8
MS.gene019456.t1 MTR_6g016850 34.426 122 76 3 20 139 11 130 6.89e-13 67.0
MS.gene019456.t1 MTR_3g102600 30.328 122 84 1 21 142 11 131 6.57e-12 64.7
MS.gene019456.t1 MTR_8g093040 32.258 124 80 2 22 142 18 140 8.40e-12 65.9
MS.gene019456.t1 MTR_3g102600 29.412 136 87 2 21 156 11 137 9.69e-12 65.1
MS.gene019456.t1 MTR_8g105600 30.833 120 82 1 20 139 11 129 2.09e-11 66.6
MS.gene019456.t1 MTR_4g061360 30.469 128 84 3 18 142 85 210 4.28e-11 65.9
MS.gene019456.t1 MTR_7g118260 26.404 178 119 5 18 184 10 186 8.92e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019456.t1 AT3G16857 27.106 273 186 6 20 285 35 301 5.64e-25 108
MS.gene019456.t1 AT3G16857 27.106 273 186 6 20 285 35 301 5.95e-25 108
MS.gene019456.t1 AT2G25180 29.231 260 148 6 21 272 16 247 5.58e-24 105
MS.gene019456.t1 AT2G01760 27.451 306 194 8 20 319 9 292 2.03e-23 102
MS.gene019456.t1 AT1G67710 27.863 262 156 6 20 272 9 246 3.37e-23 102
MS.gene019456.t1 AT4G31920 27.344 256 152 4 21 275 16 238 1.60e-22 100
MS.gene019456.t1 AT5G58080 27.881 269 169 6 5 272 2 246 5.24e-21 96.7
MS.gene019456.t1 AT2G01760 25.150 334 194 9 20 319 9 320 2.84e-18 87.0
MS.gene019456.t1 AT5G07210 25.940 266 181 5 19 272 13 274 2.85e-17 85.1
MS.gene019456.t1 AT3G16857 25.424 236 163 6 57 285 2 231 3.73e-17 84.7
MS.gene019456.t1 AT1G49190 25.714 280 165 11 20 285 32 282 5.54e-17 83.2
MS.gene019456.t1 AT3G62670 26.119 268 161 7 23 283 42 279 1.58e-16 82.0
MS.gene019456.t1 AT5G07210 26.642 274 177 8 19 272 13 282 4.48e-15 78.2
MS.gene019456.t1 AT5G49240 22.394 259 164 6 21 269 41 272 2.05e-13 71.2
MS.gene019456.t1 AT2G40970 36.066 122 62 2 219 339 103 209 5.00e-13 69.3
MS.gene019456.t1 AT4G00760 29.557 203 134 5 40 238 1 198 5.59e-13 70.5
MS.gene019456.t1 AT2G27070 24.727 275 176 10 19 272 13 277 3.61e-12 68.9

Find 108 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTAGACCAATTGCATTT+TGG 0.197726 8.1:-68865026 None:intergenic
ATATCACGGGCTCTTGGTTT+TGG 0.233266 8.1:+68864811 MS.gene019456:CDS
ATATGATCTCATAGGGAAAA+TGG 0.247633 8.1:+68864626 MS.gene019456:CDS
GAGTGCCTCAAACTATTTAC+AGG 0.272286 8.1:+68865359 MS.gene019456:CDS
GTTGTCCGGAGTCACCTTTC+AGG 0.273076 8.1:+68865913 MS.gene019456:CDS
ATTCTTCTTCTCACCGATAA+TGG 0.281588 8.1:-68864556 None:intergenic
AGTACTGAGTTATCTTTATC+AGG 0.287313 8.1:-68865114 None:intergenic
TGATTTACATAAGAAGTTCT+TGG 0.299908 8.1:+68865167 MS.gene019456:CDS
ATAGTTTGAGGCACTCTCTT+TGG 0.318103 8.1:-68865352 None:intergenic
TCCGATGCATTATCCATTAT+CGG 0.329441 8.1:+68864543 MS.gene019456:CDS
CTAATTAGGCCACTTTGATT+TGG 0.334246 8.1:+68866415 MS.gene019456:intron
ATGGAAATATATGATCTCAT+AGG 0.352251 8.1:+68864618 MS.gene019456:CDS
AAAACCAAGAGCCCGTGATA+TGG 0.366143 8.1:-68864809 None:intergenic
AGATCCTTCGGATCGGCATC+TGG 0.369128 8.1:-68865825 None:intergenic
ACCCTTCCACATTCATAATC+TGG 0.374739 8.1:-68865326 None:intergenic
TGGCTTTCTAAAACACCATT+TGG 0.375414 8.1:-68864836 None:intergenic
CTTCTTTCACTTGGATATGA+AGG 0.378032 8.1:+68864097 MS.gene019456:CDS
CAATGACTGTTGTTTCATAT+CGG 0.387086 8.1:-68864906 None:intergenic
GCATCTGTCAGATGTGATTA+TGG 0.389198 8.1:+68864951 MS.gene019456:CDS
TCCTCAGCTTCGCCGCTGAC+TGG 0.399441 8.1:-68863994 None:intergenic
TTTCTGATCTACATGACCTT+TGG 0.412759 8.1:+68864866 MS.gene019456:CDS
AGATCATATATTTCCATGTC+TGG 0.416853 8.1:-68864612 None:intergenic
GACTTTGCTGTTCCAATGGC+AGG 0.429908 8.1:-68865950 None:intergenic
TTAGGCCACTTTGATTTGGC+AGG 0.436132 8.1:+68866419 MS.gene019456:intron
AGACCATTCTCCTGTATTCA+TGG 0.436149 8.1:-68865001 None:intergenic
CCTTCCATATCACGGGCTCT+TGG 0.439741 8.1:+68864805 MS.gene019456:CDS
ATAACTCAGTACTCCTGAAC+AGG 0.440547 8.1:+68865124 MS.gene019456:CDS
CAGTACTCCTGAACAGGAAA+AGG 0.443080 8.1:+68865130 MS.gene019456:CDS
CTTGGAAAGCTCAAGTTGTC+CGG 0.445175 8.1:+68865899 MS.gene019456:CDS
GACAGATGCCACACGAAGTC+AGG 0.457217 8.1:-68864937 None:intergenic
ATAATCTGGAATATTGTCTT+CGG 0.459039 8.1:-68865312 None:intergenic
CTCCTGTATTCATGGATGGT+TGG 0.460192 8.1:-68864993 None:intergenic
TATGATCTCATAGGGAAAAT+GGG 0.464740 8.1:+68864627 MS.gene019456:CDS
GTTGGTTGTGGATGCTAGTT+CGG 0.466592 8.1:+68864048 MS.gene019456:CDS
TTGGAAGCTGTTGAAATAGC+AGG 0.471879 8.1:+68865186 MS.gene019456:CDS
AAATCAGCTGTCCCTGCCAT+TGG 0.472311 8.1:+68865938 MS.gene019456:CDS
TGAACAGGAAAAGGAAAAGC+TGG 0.472904 8.1:+68865139 MS.gene019456:CDS
AAGTGCAAATGGTAAAGAAC+AGG 0.480421 8.1:+68865086 MS.gene019456:CDS
TGTAGATCAGAAATCTGAAC+TGG 0.485157 8.1:-68864856 None:intergenic
AAGACTCTCCGAAGTGCAAA+TGG 0.488236 8.1:+68865075 MS.gene019456:CDS
TCCAGTCAGCGGCGAAGCTG+AGG 0.492869 8.1:+68863993 MS.gene019456:CDS
TGCCAACCATCCATGAATAC+AGG 0.500767 8.1:+68864991 MS.gene019456:CDS
TGGAAATATATGATCTCATA+GGG 0.502031 8.1:+68864619 MS.gene019456:CDS
ACAAACCTGTAAATAGTTTG+AGG 0.502869 8.1:-68865364 None:intergenic
TGGTCTCGCCAAAATGCAAT+TGG 0.505607 8.1:+68865018 MS.gene019456:CDS
CATCTGCTGTATTCAAAACC+TGG 0.512978 8.1:-68866043 None:intergenic
TTCCTGCATTCAAGAACGGT+TGG 0.513403 8.1:-68865050 None:intergenic
GACCAACCGTTCTTGAATGC+AGG 0.521642 8.1:+68865048 MS.gene019456:CDS
TCTGGTGGTAGTGGCGGCAT+AGG 0.521933 8.1:-68866149 None:intergenic
ATAGGAAGCACCATGCATAA+TGG 0.522991 8.1:-68866131 None:intergenic
GATGGAGAAGTTTCTAATGC+AGG 0.527317 8.1:+68866062 MS.gene019456:CDS
CATTCTCCTGTATTCATGGA+TGG 0.527538 8.1:-68864997 None:intergenic
TTCCAGATTATGAATGTGGA+AGG 0.529710 8.1:+68865324 MS.gene019456:CDS
GAACCTACGTGCTACTGCAA+TGG 0.529949 8.1:+68865719 MS.gene019456:CDS
GTTCTTTACCATTTGCACTT+CGG 0.531052 8.1:-68865083 None:intergenic
AACTCAGCTGTTTACTGATG+AGG 0.532043 8.1:+68866211 MS.gene019456:CDS
TACTAGAACTTACTGAAAGA+CGG 0.532803 8.1:-68864666 None:intergenic
GGAGGTTCAGTTGCCAGACA+TGG 0.533668 8.1:+68864599 MS.gene019456:CDS
ACAAAATTACTGAGATCCTT+CGG 0.535642 8.1:-68865837 None:intergenic
AGGTACCATGGTCCAGTAGC+CGG 0.537071 8.1:+68864016 MS.gene019456:CDS
TGAGGTTAACCTTGTGCTTG+TGG 0.538862 8.1:+68864578 MS.gene019456:CDS
GTTTATAAACCTACCAAGGC+TGG 0.543151 8.1:-68865988 None:intergenic
ACTAGAACTTACTGAAAGAC+GGG 0.544678 8.1:-68864665 None:intergenic
GCGCACACCACATCCAGCCT+TGG 0.545507 8.1:+68865975 MS.gene019456:CDS
TCTTTCAATACTAGTTATGA+CGG 0.548526 8.1:+68864509 MS.gene019456:intron
CGGACAACTTGAGCTTTCCA+AGG 0.549307 8.1:-68865898 None:intergenic
GCAGGACTTTGCTGTTCCAA+TGG 0.549979 8.1:-68865954 None:intergenic
AAACCTACCAAGGCTGGATG+TGG 0.553582 8.1:-68865982 None:intergenic
CTGATGAGGATTTGAAAATG+TGG 0.559224 8.1:+68866225 MS.gene019456:CDS
AATATTCCAGATTATGAATG+TGG 0.565218 8.1:+68865320 MS.gene019456:CDS
AGGCTGGATGTGGTGTGCGC+AGG 0.568764 8.1:-68865972 None:intergenic
ATGATACTCCTTCCATATCA+CGG 0.568950 8.1:+68864797 MS.gene019456:CDS
CATCCATGAATACAGGAGAA+TGG 0.575042 8.1:+68864998 MS.gene019456:CDS
TGATACTCCTTCCATATCAC+GGG 0.577985 8.1:+68864798 MS.gene019456:CDS
TGGTTGGCATTCGAGACCCT+TGG 0.583630 8.1:-68864977 None:intergenic
AGTCAGCGGCGAAGCTGAGG+AGG 0.585284 8.1:+68863996 MS.gene019456:CDS
ACACCACATCCAGCCTTGGT+AGG 0.587197 8.1:+68865979 MS.gene019456:CDS
TCCACACTGCGAATCGCCAA+AGG 0.589805 8.1:-68864882 None:intergenic
TGATCCAGATGCCGATCCGA+AGG 0.594251 8.1:+68865821 MS.gene019456:CDS
ACCGATAATGGATAATGCAT+CGG 0.594739 8.1:-68864544 None:intergenic
TCCAGATTATGAATGTGGAA+GGG 0.595446 8.1:+68865325 MS.gene019456:CDS
ACTTTGCTGTTCCAATGGCA+GGG 0.595685 8.1:-68865949 None:intergenic
CCAAGAGCCCGTGATATGGA+AGG 0.596254 8.1:-68864805 None:intergenic
CAGATACATCATCATTAACA+CGG 0.604526 8.1:-68866010 None:intergenic
GGACAACTTGAGCTTTCCAA+GGG 0.606529 8.1:-68865897 None:intergenic
TCTCGAACTAACAAAAGTCA+AGG 0.607987 8.1:+68865765 MS.gene019456:CDS
AGATGTGATTATGGCAACCA+AGG 0.609212 8.1:+68864960 MS.gene019456:CDS
ACCTTTGGCGATTCGCAGTG+TGG 0.611049 8.1:+68864881 MS.gene019456:CDS
ATGTGGTTATCAACGATTCG+AGG 0.613048 8.1:+68866242 MS.gene019456:CDS
CACGGTTTATAAACCTACCA+AGG 0.615074 8.1:-68865992 None:intergenic
TTACACCGGCTACTGGACCA+TGG 0.619788 8.1:-68864021 None:intergenic
AGTAGCCGGTGTAAAAGTGT+TGG 0.620685 8.1:+68864030 MS.gene019456:CDS
GGTTAACCTTGTGCTTGTGG+AGG 0.621345 8.1:+68864581 MS.gene019456:CDS
TGTATCTGAAAAGATCAGCC+AGG 0.622080 8.1:+68866025 MS.gene019456:CDS
GATGTGATTATGGCAACCAA+GGG 0.624431 8.1:+68864961 MS.gene019456:CDS
CATTGCCTGCCAAATCAAAG+TGG 0.629641 8.1:-68866424 None:intergenic
GAAGTGTCAAGAATATGCAC+AGG 0.635227 8.1:-68865861 None:intergenic
GTTGAAATAGCAGGAATCGA+CGG 0.638995 8.1:+68865195 MS.gene019456:CDS
GTCTGACGAGTTCCAGTCAG+CGG 0.643494 8.1:+68863982 MS.gene019456:CDS
TATCGGTGAGAAGAAGAATG+AGG 0.648400 8.1:+68864560 MS.gene019456:CDS
GCGAAGCTGAGGAGGTACCA+TGG 0.649372 8.1:+68864004 MS.gene019456:CDS
CGGTGTAAAAGTGTTGGTTG+TGG 0.652064 8.1:+68864036 MS.gene019456:CDS
AAGCAGTACCTGACTTCGTG+TGG 0.652087 8.1:+68864929 MS.gene019456:CDS
ACTGAACCTCCACAAGCACA+AGG 0.665135 8.1:-68864587 None:intergenic
ATTACTGAGATCCTTCGGAT+CGG 0.667987 8.1:-68865832 None:intergenic
GTTCCATTGCAGTAGCACGT+AGG 0.677485 8.1:-68865722 None:intergenic
CATGTGCGAACCATTATGCA+TGG 0.704435 8.1:+68866121 MS.gene019456:CDS
TCGCACATGTCAAAGCTCAG+CGG 0.744624 8.1:-68866107 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTCAAAAATAAATAAAAA+TGG - chr8.1:68864475-68864494 None:intergenic 10.0%
!! AACAAAAATGATAAATAACA+AGG - chr8.1:68866369-68866388 None:intergenic 15.0%
!! ATCAATATGATTATTCATTA+TGG + chr8.1:68864270-68864289 MS.gene019456:intron 15.0%
!! TTTGTTAAAAACTTCTAATT+AGG + chr8.1:68866401-68866420 MS.gene019456:intron 15.0%
!!! AATAATCATATTGATTTCTA+TGG - chr8.1:68864265-68864284 None:intergenic 15.0%
!! AAACAATCAAATGTACTATT+AGG - chr8.1:68865679-68865698 None:intergenic 20.0%
!!! TTTTCAATTTTTGCTTCTTA+AGG + chr8.1:68864427-68864446 MS.gene019456:intron 20.0%
! AATATTCCAGATTATGAATG+TGG + chr8.1:68865320-68865339 MS.gene019456:CDS 25.0%
! ATGGAAATATATGATCTCAT+AGG + chr8.1:68864618-68864637 MS.gene019456:CDS 25.0%
! GAAGCAAAAATTGAAAATCA+CGG - chr8.1:68864424-68864443 None:intergenic 25.0%
! TAGATAAACAGCTAGAAATA+TGG - chr8.1:68864238-68864257 None:intergenic 25.0%
! TCTTTCAATACTAGTTATGA+CGG + chr8.1:68864509-68864528 MS.gene019456:intron 25.0%
! TGATTTACATAAGAAGTTCT+TGG + chr8.1:68865167-68865186 MS.gene019456:CDS 25.0%
! TGGAAATATATGATCTCATA+GGG + chr8.1:68864619-68864638 MS.gene019456:CDS 25.0%
!! ATAATCTGGAATATTGTCTT+CGG - chr8.1:68865315-68865334 None:intergenic 25.0%
!! GCATTTTTGATACAATTGTT+CGG - chr8.1:68864078-68864097 None:intergenic 25.0%
!! GTAAGTTCTAGTAATAACTT+TGG + chr8.1:68864676-68864695 MS.gene019456:intron 25.0%
!! TAAAGTCTGAAACTCAAAAT+AGG + chr8.1:68865486-68865505 MS.gene019456:intron 25.0%
!! TGGAAATATCTGAAACTTTA+AGG - chr8.1:68864218-68864237 None:intergenic 25.0%
!!! AATTTCAGTTATGTTTTAGC+AGG + chr8.1:68865586-68865605 MS.gene019456:intron 25.0%
!!! ATCAAAACTTGTTTTTCTAG+AGG - chr8.1:68865798-68865817 None:intergenic 25.0%
!!! TCAAAACTTGTTTTTCTAGA+GGG - chr8.1:68865797-68865816 None:intergenic 25.0%
AAGGTAATTGACACTTATTC+TGG + chr8.1:68864116-68864135 MS.gene019456:intron 30.0%
ACAAAATTACTGAGATCCTT+CGG - chr8.1:68865840-68865859 None:intergenic 30.0%
ACAAACCTGTAAATAGTTTG+AGG - chr8.1:68865367-68865386 None:intergenic 30.0%
AGATCATATATTTCCATGTC+TGG - chr8.1:68864615-68864634 None:intergenic 30.0%
ATATGATCTCATAGGGAAAA+TGG + chr8.1:68864626-68864645 MS.gene019456:CDS 30.0%
CAGATACATCATCATTAACA+CGG - chr8.1:68866013-68866032 None:intergenic 30.0%
CTTCTTAAGGCTAAACTATT+GGG + chr8.1:68864440-68864459 MS.gene019456:intron 30.0%
TACTAGAACTTACTGAAAGA+CGG - chr8.1:68864669-68864688 None:intergenic 30.0%
TATGATCTCATAGGGAAAAT+GGG + chr8.1:68864627-68864646 MS.gene019456:CDS 30.0%
TCAAAAATGCTTCTTTCACT+TGG + chr8.1:68864088-68864107 MS.gene019456:CDS 30.0%
! AGTACTGAGTTATCTTTATC+AGG - chr8.1:68865117-68865136 None:intergenic 30.0%
! TACAGGTTTGTTCTTTGTAA+TGG + chr8.1:68865376-68865395 MS.gene019456:intron 30.0%
! TTTTTAATAACCGACATGTG+TGG + chr8.1:68865437-68865456 MS.gene019456:intron 30.0%
!! CAATGACTGTTGTTTCATAT+CGG - chr8.1:68864909-68864928 None:intergenic 30.0%
!!! TCATAGTATGCTTTTTCATC+TGG - chr8.1:68866170-68866189 None:intergenic 30.0%
!!! TTTTTTCCTGCATTCAAGAA+CGG - chr8.1:68865057-68865076 None:intergenic 30.0%
AAACTCAAAATAGGCACACT+TGG + chr8.1:68865495-68865514 MS.gene019456:intron 35.0%
AACTCAAAATAGGCACACTT+GGG + chr8.1:68865496-68865515 MS.gene019456:intron 35.0%
AAGTGCAAATGGTAAAGAAC+AGG + chr8.1:68865086-68865105 MS.gene019456:CDS 35.0%
ACTAGAACTTACTGAAAGAC+GGG - chr8.1:68864668-68864687 None:intergenic 35.0%
ATGATACTCCTTCCATATCA+CGG + chr8.1:68864797-68864816 MS.gene019456:CDS 35.0%
ATTAATTTCTGCTGTGCTAG+TGG + chr8.1:68865242-68865261 MS.gene019456:intron 35.0%
ATTCTTCTTCTCACCGATAA+TGG - chr8.1:68864559-68864578 None:intergenic 35.0%
CACGCACAATGATATATTAC+TGG - chr8.1:68866278-68866297 None:intergenic 35.0%
CTGATGAGGATTTGAAAATG+TGG + chr8.1:68866225-68866244 MS.gene019456:CDS 35.0%
CTTCTTTCACTTGGATATGA+AGG + chr8.1:68864097-68864116 MS.gene019456:CDS 35.0%
GCTTCTTAAGGCTAAACTAT+TGG + chr8.1:68864439-68864458 MS.gene019456:intron 35.0%
GTTCTTTACCATTTGCACTT+CGG - chr8.1:68865086-68865105 None:intergenic 35.0%
TCCAGATTATGAATGTGGAA+GGG + chr8.1:68865325-68865344 MS.gene019456:CDS 35.0%
TCCGATGCATTATCCATTAT+CGG + chr8.1:68864543-68864562 MS.gene019456:CDS 35.0%
TCTCGAACTAACAAAAGTCA+AGG + chr8.1:68865765-68865784 MS.gene019456:CDS 35.0%
TGTAGATCAGAAATCTGAAC+TGG - chr8.1:68864859-68864878 None:intergenic 35.0%
TTCCAGATTATGAATGTGGA+AGG + chr8.1:68865324-68865343 MS.gene019456:CDS 35.0%
TTTCTGATCTACATGACCTT+TGG + chr8.1:68864866-68864885 MS.gene019456:CDS 35.0%
! CTAATTAGGCCACTTTGATT+TGG + chr8.1:68866415-68866434 MS.gene019456:intron 35.0%
! CTTCTAGACCAATTGCATTT+TGG - chr8.1:68865029-68865048 None:intergenic 35.0%
!! ACCGATAATGGATAATGCAT+CGG - chr8.1:68864547-68864566 None:intergenic 35.0%
!! TCTGTTTCTGCATTATCATG+TGG + chr8.1:68865639-68865658 MS.gene019456:intron 35.0%
!! TGGCTTTCTAAAACACCATT+TGG - chr8.1:68864839-68864858 None:intergenic 35.0%
!!! TAGTATGCTTTTTCATCTGG+TGG - chr8.1:68866167-68866186 None:intergenic 35.0%
AACTCAGCTGTTTACTGATG+AGG + chr8.1:68866211-68866230 MS.gene019456:CDS 40.0%
AACTTTCCAGTAATCCCCAA+TGG - chr8.1:68865543-68865562 None:intergenic 40.0%
ACCCTTCCACATTCATAATC+TGG - chr8.1:68865329-68865348 None:intergenic 40.0%
ACTCAAAATAGGCACACTTG+GGG + chr8.1:68865497-68865516 MS.gene019456:intron 40.0%
AGACCATTCTCCTGTATTCA+TGG - chr8.1:68865004-68865023 None:intergenic 40.0%
AGATGTGATTATGGCAACCA+AGG + chr8.1:68864960-68864979 MS.gene019456:CDS 40.0%
ATAACTCAGTACTCCTGAAC+AGG + chr8.1:68865124-68865143 MS.gene019456:CDS 40.0%
ATGTGGTTATCAACGATTCG+AGG + chr8.1:68866242-68866261 MS.gene019456:CDS 40.0%
ATTACTGAGATCCTTCGGAT+CGG - chr8.1:68865835-68865854 None:intergenic 40.0%
CACGGTTTATAAACCTACCA+AGG - chr8.1:68865995-68866014 None:intergenic 40.0%
CATCCATGAATACAGGAGAA+TGG + chr8.1:68864998-68865017 MS.gene019456:CDS 40.0%
CATCTGCTGTATTCAAAACC+TGG - chr8.1:68866046-68866065 None:intergenic 40.0%
CATTCTCCTGTATTCATGGA+TGG - chr8.1:68865000-68865019 None:intergenic 40.0%
GAGTGCCTCAAACTATTTAC+AGG + chr8.1:68865359-68865378 MS.gene019456:CDS 40.0%
GATGGAGAAGTTTCTAATGC+AGG + chr8.1:68866062-68866081 MS.gene019456:CDS 40.0%
GATGTGATTATGGCAACCAA+GGG + chr8.1:68864961-68864980 MS.gene019456:CDS 40.0%
GCATCTGTCAGATGTGATTA+TGG + chr8.1:68864951-68864970 MS.gene019456:CDS 40.0%
GTTGAAATAGCAGGAATCGA+CGG + chr8.1:68865195-68865214 MS.gene019456:CDS 40.0%
GTTTATAAACCTACCAAGGC+TGG - chr8.1:68865991-68866010 None:intergenic 40.0%
TATCGGTGAGAAGAAGAATG+AGG + chr8.1:68864560-68864579 MS.gene019456:CDS 40.0%
TGAACAGGAAAAGGAAAAGC+TGG + chr8.1:68865139-68865158 MS.gene019456:CDS 40.0%
TGATACTCCTTCCATATCAC+GGG + chr8.1:68864798-68864817 MS.gene019456:CDS 40.0%
TGTATCTGAAAAGATCAGCC+AGG + chr8.1:68866025-68866044 MS.gene019456:CDS 40.0%
TTGGAAGCTGTTGAAATAGC+AGG + chr8.1:68865186-68865205 MS.gene019456:CDS 40.0%
TTTACATCAAGCAGTACGCT+TGG - chr8.1:68865470-68865489 None:intergenic 40.0%
! AGCTTTTCCTTTTCCTGTTC+AGG - chr8.1:68865140-68865159 None:intergenic 40.0%
! ATAGTTTGAGGCACTCTCTT+TGG - chr8.1:68865355-68865374 None:intergenic 40.0%
! CACAACCAACACTTTTACAC+CGG - chr8.1:68864038-68864057 None:intergenic 40.0%
! GAAGTGTCAAGAATATGCAC+AGG - chr8.1:68865864-68865883 None:intergenic 40.0%
! TGGACATTTTCCACACATGT+CGG - chr8.1:68865450-68865469 None:intergenic 40.0%
!! ATAGGAAGCACCATGCATAA+TGG - chr8.1:68866134-68866153 None:intergenic 40.0%
!!! CAGGTTTTGAATACAGCAGA+TGG + chr8.1:68866044-68866063 MS.gene019456:CDS 40.0%
!!! TTCTGCTACTTTTCTTCCCT+TGG + chr8.1:68865881-68865900 MS.gene019456:CDS 40.0%
AAAACCAAGAGCCCGTGATA+TGG - chr8.1:68864812-68864831 None:intergenic 45.0%
AAGACTCTCCGAAGTGCAAA+TGG + chr8.1:68865075-68865094 MS.gene019456:CDS 45.0%
ACTACTGCACTCACATTTCG+TGG + chr8.1:68864189-68864208 MS.gene019456:intron 45.0%
CAGTACTCCTGAACAGGAAA+AGG + chr8.1:68865130-68865149 MS.gene019456:CDS 45.0%
CATGTGCGAACCATTATGCA+TGG + chr8.1:68866121-68866140 MS.gene019456:CDS 45.0%
CATTGCCTGCCAAATCAAAG+TGG - chr8.1:68866427-68866446 None:intergenic 45.0%
CTCCTGTATTCATGGATGGT+TGG - chr8.1:68864996-68865015 None:intergenic 45.0%
GGACAACTTGAGCTTTCCAA+GGG - chr8.1:68865900-68865919 None:intergenic 45.0%
GTTGGTTGTGGATGCTAGTT+CGG + chr8.1:68864048-68864067 MS.gene019456:CDS 45.0%
TATATCATTGTGCGTGCGCT+CGG + chr8.1:68866282-68866301 MS.gene019456:intron 45.0%
TGAGGTTAACCTTGTGCTTG+TGG + chr8.1:68864578-68864597 MS.gene019456:CDS 45.0%
TGCCAACCATCCATGAATAC+AGG + chr8.1:68864991-68865010 MS.gene019456:CDS 45.0%
TGGTCTCGCCAAAATGCAAT+TGG + chr8.1:68865018-68865037 MS.gene019456:CDS 45.0%
TTCCAGTAATCCCCAATGGT+GGG - chr8.1:68865539-68865558 None:intergenic 45.0%
TTCCTGCATTCAAGAACGGT+TGG - chr8.1:68865053-68865072 None:intergenic 45.0%
TTGTCGTTCTTGTGTGAAGC+TGG + chr8.1:68865288-68865307 MS.gene019456:intron 45.0%
TTTCCAGTAATCCCCAATGG+TGG - chr8.1:68865540-68865559 None:intergenic 45.0%
! AGTAGCCGGTGTAAAAGTGT+TGG + chr8.1:68864030-68864049 MS.gene019456:CDS 45.0%
! ATATCACGGGCTCTTGGTTT+TGG + chr8.1:68864811-68864830 MS.gene019456:CDS 45.0%
! CTTGGAAAGCTCAAGTTGTC+CGG + chr8.1:68865899-68865918 MS.gene019456:CDS 45.0%
! TTTTGCCTGAAAGGTGACTC+CGG - chr8.1:68865921-68865940 None:intergenic 45.0%
!! AACACTTTTACACCGGCTAC+TGG - chr8.1:68864031-68864050 None:intergenic 45.0%
!! ACTTTGCTGTTCCAATGGCA+GGG - chr8.1:68865952-68865971 None:intergenic 45.0%
!! CGGTGTAAAAGTGTTGGTTG+TGG + chr8.1:68864036-68864055 MS.gene019456:CDS 45.0%
!! GACAGCTGATTTTGCCTGAA+AGG - chr8.1:68865930-68865949 None:intergenic 45.0%
!! TTAGGCCACTTTGATTTGGC+AGG + chr8.1:68866419-68866438 MS.gene019456:intron 45.0%
!!! CTCTTGGTTTTGGAGCCAAA+TGG + chr8.1:68864821-68864840 MS.gene019456:CDS 45.0%
!!! GCTTTTTCATCTGGTGGTAG+TGG - chr8.1:68866161-68866180 None:intergenic 45.0%
!!! TTTTCATCTGGTGGTAGTGG+CGG - chr8.1:68866158-68866177 None:intergenic 45.0%
!!! ATTTTTTATATTTATATTTC+TGG + chr8.1:68864151-68864170 MS.gene019456:intron 5.0%
AAACCTACCAAGGCTGGATG+TGG - chr8.1:68865985-68866004 None:intergenic 50.0%
AAATCAGCTGTCCCTGCCAT+TGG + chr8.1:68865938-68865957 MS.gene019456:CDS 50.0%
AAGCAGTACCTGACTTCGTG+TGG + chr8.1:68864929-68864948 MS.gene019456:CDS 50.0%
ACTGAACCTCCACAAGCACA+AGG - chr8.1:68864590-68864609 None:intergenic 50.0%
ATATCATTGTGCGTGCGCTC+GGG + chr8.1:68866283-68866302 MS.gene019456:intron 50.0%
ATCTCAGCGACAAGCATGTG+CGG - chr8.1:68864720-68864739 None:intergenic 50.0%
CGGACAACTTGAGCTTTCCA+AGG - chr8.1:68865901-68865920 None:intergenic 50.0%
GACCAACCGTTCTTGAATGC+AGG + chr8.1:68865048-68865067 MS.gene019456:CDS 50.0%
GGTTAACCTTGTGCTTGTGG+AGG + chr8.1:68864581-68864600 MS.gene019456:CDS 50.0%
GTTCCATTGCAGTAGCACGT+AGG - chr8.1:68865725-68865744 None:intergenic 50.0%
TAATCGAGGCTCCCACCATT+GGG + chr8.1:68865525-68865544 MS.gene019456:intron 50.0%
TCGCACATGTCAAAGCTCAG+CGG - chr8.1:68866110-68866129 None:intergenic 50.0%
! GAACCTACGTGCTACTGCAA+TGG + chr8.1:68865719-68865738 MS.gene019456:CDS 50.0%
!! GACTTTGCTGTTCCAATGGC+AGG - chr8.1:68865953-68865972 None:intergenic 50.0%
!! GCAGGACTTTGCTGTTCCAA+TGG - chr8.1:68865957-68865976 None:intergenic 50.0%
AAATAGGCACACTTGGGGCC+TGG + chr8.1:68865502-68865521 MS.gene019456:intron 55.0%
AATCGAGGCTCCCACCATTG+GGG + chr8.1:68865526-68865545 MS.gene019456:intron 55.0%
ACACCACATCCAGCCTTGGT+AGG + chr8.1:68865979-68865998 MS.gene019456:CDS 55.0%
ACCTTTGGCGATTCGCAGTG+TGG + chr8.1:68864881-68864900 MS.gene019456:CDS 55.0%
AGATCCTTCGGATCGGCATC+TGG - chr8.1:68865828-68865847 None:intergenic 55.0%
AGGTACCATGGTCCAGTAGC+CGG + chr8.1:68864016-68864035 MS.gene019456:CDS 55.0%
CCAAGAGCCCGTGATATGGA+AGG - chr8.1:68864808-68864827 None:intergenic 55.0%
CCTTCCATATCACGGGCTCT+TGG + chr8.1:68864805-68864824 MS.gene019456:CDS 55.0%
CTCCCACCATTGGGGATTAC+TGG + chr8.1:68865534-68865553 MS.gene019456:intron 55.0%
GACAGATGCCACACGAAGTC+AGG - chr8.1:68864940-68864959 None:intergenic 55.0%
GGAGGTTCAGTTGCCAGACA+TGG + chr8.1:68864599-68864618 MS.gene019456:CDS 55.0%
GTAATCGAGGCTCCCACCAT+TGG + chr8.1:68865524-68865543 MS.gene019456:intron 55.0%
GTCTGACGAGTTCCAGTCAG+CGG + chr8.1:68863982-68864001 MS.gene019456:CDS 55.0%
GTTGTCCGGAGTCACCTTTC+AGG + chr8.1:68865913-68865932 MS.gene019456:CDS 55.0%
TCCACACTGCGAATCGCCAA+AGG - chr8.1:68864885-68864904 None:intergenic 55.0%
TGATCCAGATGCCGATCCGA+AGG + chr8.1:68865821-68865840 MS.gene019456:CDS 55.0%
TGGTTGGCATTCGAGACCCT+TGG - chr8.1:68864980-68864999 None:intergenic 55.0%
TGTAGACTCACTCGTGCTCG+CGG - chr8.1:68866309-68866328 None:intergenic 55.0%
! TTACACCGGCTACTGGACCA+TGG - chr8.1:68864024-68864043 None:intergenic 55.0%
CACTTGGGGCCTGGTAATCG+AGG + chr8.1:68865511-68865530 MS.gene019456:intron 60.0%
TGGTGGGAGCCTCGATTACC+AGG - chr8.1:68865523-68865542 None:intergenic 60.0%
!! GCGAAGCTGAGGAGGTACCA+TGG + chr8.1:68864004-68864023 MS.gene019456:CDS 60.0%
!! TCTGGTGGTAGTGGCGGCAT+AGG - chr8.1:68866152-68866171 None:intergenic 60.0%
AGGCTGGATGTGGTGTGCGC+AGG - chr8.1:68865975-68865994 None:intergenic 65.0%
AGTCAGCGGCGAAGCTGAGG+AGG + chr8.1:68863996-68864015 MS.gene019456:CDS 65.0%
GCGCACACCACATCCAGCCT+TGG + chr8.1:68865975-68865994 MS.gene019456:CDS 65.0%
TCCAGTCAGCGGCGAAGCTG+AGG + chr8.1:68863993-68864012 MS.gene019456:CDS 65.0%
TCCTCAGCTTCGCCGCTGAC+TGG - chr8.1:68863997-68864016 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 68863977 68866463 68863977 ID=MS.gene019456
chr8.1 mRNA 68863977 68866463 68863977 ID=MS.gene019456.t1;Parent=MS.gene019456
chr8.1 exon 68863977 68864118 68863977 ID=MS.gene019456.t1.exon1;Parent=MS.gene019456.t1
chr8.1 CDS 68863977 68864118 68863977 ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1
chr8.1 exon 68864523 68864675 68864523 ID=MS.gene019456.t1.exon2;Parent=MS.gene019456.t1
chr8.1 CDS 68864523 68864675 68864523 ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1
chr8.1 exon 68864779 68865216 68864779 ID=MS.gene019456.t1.exon3;Parent=MS.gene019456.t1
chr8.1 CDS 68864779 68865216 68864779 ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1
chr8.1 exon 68865307 68865380 68865307 ID=MS.gene019456.t1.exon4;Parent=MS.gene019456.t1
chr8.1 CDS 68865307 68865380 68865307 ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1
chr8.1 exon 68865702 68866263 68865702 ID=MS.gene019456.t1.exon5;Parent=MS.gene019456.t1
chr8.1 CDS 68865702 68866263 68865702 ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1
chr8.1 exon 68866423 68866463 68866423 ID=MS.gene019456.t1.exon6;Parent=MS.gene019456.t1
chr8.1 CDS 68866423 68866463 68866423 ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1
Gene Sequence

>MS.gene019456

ATGGAGTCTGACGAGTTCCAGTCAGCGGCGAAGCTGAGGAGGTACCATGGTCCAGTAGCCGGTGTAAAAGTGTTGGTTGTGGATGCTAGTTCGGCATGCCGAACAATTGTATCAAAAATGCTTCTTTCACTTGGATATGAAGGTAATTGACACTTATTCTGGCAGTTAAAAGTTATTTTTTATATTTATATTTCTGGCTAATATGCTGCTGAACTACTGCACTCACATTTCGTGGCAACCTTAAAGTTTCAGATATTTCCATATTTCTAGCTGTTTATCTACTAACCATAGAAATCAATATGATTATTCATTATGGATTAGTTTTTGATAAATTTATCATATTCATTGACTCTGTTCTTTCAGCTAATAGTTTCTTTTTTAATGTATGCATGTGTCTTCTTCACTTGAGATCATCATATAATCTGATAACTTATTCTAACGTAGCCGTGATTTTCAATTTTTGCTTCTTAAGGCTAAACTATTGGGATATTGTCTCCATTTTTATTTATTTTTGAAACAATTTTCTTGACATTCTTTCAATACTAGTTATGACGGCTTCACTAGCTTCCGATGCATTATCCATTATCGGTGAGAAGAAGAATGAGGTTAACCTTGTGCTTGTGGAGGTTCAGTTGCCAGACATGGAAATATATGATCTCATAGGGAAAATGGGAGAAAACTCTAATCTCCCGTCTTTCAGTAAGTTCTAGTAATAACTTTGGCTTACTATTTACTTGAAGCCGCACATGCTTGTCGCTGAGATCAATCGTTATCTGACAGTAACTATTTGTTGCATTTGTAGTTATGACTGCTTATGATGATGATACTCCTTCCATATCACGGGCTCTTGGTTTTGGAGCCAAATGGTGTTTTAGAAAGCCAGTTCAGATTTCTGATCTACATGACCTTTGGCGATTCGCAGTGTGGAACCGATATGAAACAACAGTCATTGAAGCAGTACCTGACTTCGTGTGGCATCTGTCAGATGTGATTATGGCAACCAAGGGTCTCGAATGCCAACCATCCATGAATACAGGAGAATGGTCTCGCCAAAATGCAATTGGTCTAGAAGACCAACCGTTCTTGAATGCAGGAAAAAAGACTCTCCGAAGTGCAAATGGTAAAGAACAGGAATTTCCTGATAAAGATAACTCAGTACTCCTGAACAGGAAAAGGAAAAGCTGGACTGATGATTTACATAAGAAGTTCTTGGAAGCTGTTGAAATAGCAGGAATCGACGGTGAGTTTGAACTTGTGTATTATTTATTAATTTCTGCTGTGCTAGTGGCTATAAGTAAAAAATAACGTTTGTTGTCGTTCTTGTGTGAAGCTGGTCCGAAGACAATATTCCAGATTATGAATGTGGAAGGGTTTACCAAAGAGAGTGCCTCAAACTATTTACAGGTTTGTTCTTTGTAATGGCGCACGTGTACTGTCTTGTACAACTCTTTTTTGTACACTTTTTAATAACCGACATGTGTGGAAAATGTCCAAGCGTACTGCTTGATGTAAAGTCTGAAACTCAAAATAGGCACACTTGGGGCCTGGTAATCGAGGCTCCCACCATTGGGGATTACTGGAAAGTTTGATTTTTTTTTTCAATATTGTTAATTTCAGTTATGTTTTAGCAGGAAGCAGCAGAATTAGTCTTCAGCTGCATATTCTGTTTCTGCATTATCATGTGGCATTCTAATCACGACCTAATAGTACATTTGATTGTTTCAGAGATATCGTCAATCTATGAACCTACGTGCTACTGCAATGGAACAGCATGTGAATGAATATGTGTCTCGAACTAACAAAAGTCAAGGAAAACGCCCTCTAGAAAAACAAGTTTTGATCAATGATCCAGATGCCGATCCGAAGGATCTCAGTAATTTTGTGCCTGTGCATATTCTTGACACTTCTGCTACTTTTCTTCCCTTGGAAAGCTCAAGTTGTCCGGAGTCACCTTTCAGGCAAAATCAGCTGTCCCTGCCATTGGAACAGCAAAGTCCTGCGCACACCACATCCAGCCTTGGTAGGTTTATAAACCGTGTTAATGATGATGTATCTGAAAAGATCAGCCAGGTTTTGAATACAGCAGATGGAGAAGTTTCTAATGCAGGACAACAGTTGAATTTTTCAACACCGCTGAGCTTTGACATGTGCGAACCATTATGCATGGTGCTTCCTATGCCGCCACTACCACCAGATGAAAAAGCATACTATGATAAGTTTTTTTATGCAAAAGAAACTCAGCTGTTTACTGATGAGGATTTGAAAATGTGGTTATCAACGATTCGAGGTATGAACATGCCAGTAATATATCATTGTGCGTGCGCTCGGGCCGCGAGCACGAGTGAGTCTACATTTTCTTCTTGTTTCTATTATTATTTACATATATTCTCCTTGTTATTTATCATTTTTGTTATTTTTTACTTTTTTGTTAAAAACTTCTAATTAGGCCACTTTGATTTGGCAGGCAATGTGAATGCTTTTGCTTGA

Protein sequence

>MS.gene019456.t1

MESDEFQSAAKLRRYHGPVAGVKVLVVDASSACRTIVSKMLLSLGYEVMTASLASDALSIIGEKKNEVNLVLVEVQLPDMEIYDLIGKMGENSNLPSFIMTAYDDDTPSISRALGFGAKWCFRKPVQISDLHDLWRFAVWNRYETTVIEAVPDFVWHLSDVIMATKGLECQPSMNTGEWSRQNAIGLEDQPFLNAGKKTLRSANGKEQEFPDKDNSVLLNRKRKSWTDDLHKKFLEAVEIAGIDAGPKTIFQIMNVEGFTKESASNYLQRYRQSMNLRATAMEQHVNEYVSRTNKSQGKRPLEKQVLINDPDADPKDLSNFVPVHILDTSATFLPLESSSCPESPFRQNQLSLPLEQQSPAHTTSSLGRFINRVNDDVSEKISQVLNTADGEVSNAGQQLNFSTPLSFDMCEPLCMVLPMPPLPPDEKAYYDKFFYAKETQLFTDEDLKMWLSTIRGHFDLAGNVNAFA