AlfalfaGEDB | MS.gene019456

M. sativa cultivar XinJiangDaYe / MS.gene019456

KEGG: -
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1901363
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019456.t1	XP_013444950.1	92.1	457	31	2	1	457	1	452	9.80E-220	772.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019456.t1	Q5N6V8	26.7	344	195	8	21	332	9	327	1.2e-21	105.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019456.t1	A0A072TZK7	92.1	457	31	2	1	457	1	452	7.0e-220	772.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene019456.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019456.t1	MTR_8g032710	91.685	457	33	2	1	457	1	452	0.0	855
MS.gene019456.t1	MTR_3g086100	32.046	259	148	8	20	272	15	251	2.10e-28	118
MS.gene019456.t1	MTR_4g121020	32.000	275	154	6	20	287	33	281	2.55e-28	119
MS.gene019456.t1	MTR_4g121020	32.000	275	154	6	20	287	33	281	2.71e-28	119
MS.gene019456.t1	MTR_4g131600	29.921	254	155	5	20	272	22	253	6.03e-26	111
MS.gene019456.t1	MTR_8g079940	29.615	260	151	7	20	272	27	261	6.35e-26	110
MS.gene019456.t1	MTR_1g032570	30.566	265	147	8	20	272	13	252	2.51e-25	109
MS.gene019456.t1	MTR_3g106220	28.906	256	162	6	21	272	11	250	8.86e-25	108
MS.gene019456.t1	MTR_4g131570	27.799	259	165	5	20	275	19	258	4.05e-24	105
MS.gene019456.t1	MTR_2g034960	28.625	269	170	5	20	287	31	278	6.40e-24	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019456.t1	AT3G16857	27.106	273	186	6	20	285	35	301	5.64e-25	108
MS.gene019456.t1	AT3G16857	27.106	273	186	6	20	285	35	301	5.95e-25	108
MS.gene019456.t1	AT2G25180	29.231	260	148	6	21	272	16	247	5.58e-24	105
MS.gene019456.t1	AT2G01760	27.451	306	194	8	20	319	9	292	2.03e-23	102
MS.gene019456.t1	AT1G67710	27.863	262	156	6	20	272	9	246	3.37e-23	102
MS.gene019456.t1	AT4G31920	27.344	256	152	4	21	275	16	238	1.60e-22	100
MS.gene019456.t1	AT5G58080	27.881	269	169	6	5	272	2	246	5.24e-21	96.7
MS.gene019456.t1	AT2G01760	25.150	334	194	9	20	319	9	320	2.84e-18	87.0
MS.gene019456.t1	AT5G07210	25.940	266	181	5	19	272	13	274	2.85e-17	85.1
MS.gene019456.t1	AT3G16857	25.424	236	163	6	57	285	2	231	3.73e-17	84.7

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Find 108 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAGAGCCCGTGATA+TGG	0.366143	8.1:-68864809	None:intergenic
AAACCTACCAAGGCTGGATG+TGG	0.553582	8.1:-68865982	None:intergenic
AAATCAGCTGTCCCTGCCAT+TGG	0.472311	8.1:+68865938	MS.gene019456:CDS
AACTCAGCTGTTTACTGATG+AGG	0.532043	8.1:+68866211	MS.gene019456:CDS
AAGACTCTCCGAAGTGCAAA+TGG	0.488236	8.1:+68865075	MS.gene019456:CDS
AAGCAGTACCTGACTTCGTG+TGG	0.652087	8.1:+68864929	MS.gene019456:CDS
AAGTGCAAATGGTAAAGAAC+AGG	0.480421	8.1:+68865086	MS.gene019456:CDS
AATATTCCAGATTATGAATG+TGG	0.565218	8.1:+68865320	MS.gene019456:CDS
ACAAAATTACTGAGATCCTT+CGG	0.535642	8.1:-68865837	None:intergenic
ACAAACCTGTAAATAGTTTG+AGG	0.502869	8.1:-68865364	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTAATTGACACTTATTC+TGG	+	chr8.1:68864116-68864135	MS.gene019456:intron	30.0%
ACAAAATTACTGAGATCCTT+CGG	-	chr8.1:68865840-68865859	None:intergenic	30.0%
ACAAACCTGTAAATAGTTTG+AGG	-	chr8.1:68865367-68865386	None:intergenic	30.0%
AGATCATATATTTCCATGTC+TGG	-	chr8.1:68864615-68864634	None:intergenic	30.0%
ATATGATCTCATAGGGAAAA+TGG	+	chr8.1:68864626-68864645	MS.gene019456:CDS	30.0%
CAGATACATCATCATTAACA+CGG	-	chr8.1:68866013-68866032	None:intergenic	30.0%
CTTCTTAAGGCTAAACTATT+GGG	+	chr8.1:68864440-68864459	MS.gene019456:intron	30.0%
TACTAGAACTTACTGAAAGA+CGG	-	chr8.1:68864669-68864688	None:intergenic	30.0%
TATGATCTCATAGGGAAAAT+GGG	+	chr8.1:68864627-68864646	MS.gene019456:CDS	30.0%
TCAAAAATGCTTCTTTCACT+TGG	+	chr8.1:68864088-68864107	MS.gene019456:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	68863977	68866463	68863977	ID=MS.gene019456
chr8.1	mRNA	68863977	68866463	68863977	ID=MS.gene019456.t1;Parent=MS.gene019456
chr8.1	exon	68863977	68864118	68863977	ID=MS.gene019456.t1.exon1;Parent=MS.gene019456.t1
chr8.1	CDS	68863977	68864118	68863977	ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1
chr8.1	exon	68864523	68864675	68864523	ID=MS.gene019456.t1.exon2;Parent=MS.gene019456.t1
chr8.1	CDS	68864523	68864675	68864523	ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1
chr8.1	exon	68864779	68865216	68864779	ID=MS.gene019456.t1.exon3;Parent=MS.gene019456.t1
chr8.1	CDS	68864779	68865216	68864779	ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1
chr8.1	exon	68865307	68865380	68865307	ID=MS.gene019456.t1.exon4;Parent=MS.gene019456.t1
chr8.1	CDS	68865307	68865380	68865307	ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1
chr8.1	exon	68865702	68866263	68865702	ID=MS.gene019456.t1.exon5;Parent=MS.gene019456.t1
chr8.1	CDS	68865702	68866263	68865702	ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1
chr8.1	exon	68866423	68866463	68866423	ID=MS.gene019456.t1.exon6;Parent=MS.gene019456.t1
chr8.1	CDS	68866423	68866463	68866423	ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1

Gene Sequence

>MS.gene019456

ATGGAGTCTGACGAGTTCCAGTCAGCGGCGAAGCTGAGGAGGTACCATGGTCCAGTAGCCGGTGTAAAAGTGTTGGTTGTGGATGCTAGTTCGGCATGCCGAACAATTGTATCAAAAATGCTTCTTTCACTTGGATATGAAGGTAATTGACACTTATTCTGGCAGTTAAAAGTTATTTTTTATATTTATATTTCTGGCTAATATGCTGCTGAACTACTGCACTCACATTTCGTGGCAACCTTAAAGTTTCAGATATTTCCATATTTCTAGCTGTTTATCTACTAACCATAGAAATCAATATGATTATTCATTATGGATTAGTTTTTGATAAATTTATCATATTCATTGACTCTGTTCTTTCAGCTAATAGTTTCTTTTTTAATGTATGCATGTGTCTTCTTCACTTGAGATCATCATATAATCTGATAACTTATTCTAACGTAGCCGTGATTTTCAATTTTTGCTTCTTAAGGCTAAACTATTGGGATATTGTCTCCATTTTTATTTATTTTTGAAACAATTTTCTTGACATTCTTTCAATACTAGTTATGACGGCTTCACTAGCTTCCGATGCATTATCCATTATCGGTGAGAAGAAGAATGAGGTTAACCTTGTGCTTGTGGAGGTTCAGTTGCCAGACATGGAAATATATGATCTCATAGGGAAAATGGGAGAAAACTCTAATCTCCCGTCTTTCAGTAAGTTCTAGTAATAACTTTGGCTTACTATTTACTTGAAGCCGCACATGCTTGTCGCTGAGATCAATCGTTATCTGACAGTAACTATTTGTTGCATTTGTAGTTATGACTGCTTATGATGATGATACTCCTTCCATATCACGGGCTCTTGGTTTTGGAGCCAAATGGTGTTTTAGAAAGCCAGTTCAGATTTCTGATCTACATGACCTTTGGCGATTCGCAGTGTGGAACCGATATGAAACAACAGTCATTGAAGCAGTACCTGACTTCGTGTGGCATCTGTCAGATGTGATTATGGCAACCAAGGGTCTCGAATGCCAACCATCCATGAATACAGGAGAATGGTCTCGCCAAAATGCAATTGGTCTAGAAGACCAACCGTTCTTGAATGCAGGAAAAAAGACTCTCCGAAGTGCAAATGGTAAAGAACAGGAATTTCCTGATAAAGATAACTCAGTACTCCTGAACAGGAAAAGGAAAAGCTGGACTGATGATTTACATAAGAAGTTCTTGGAAGCTGTTGAAATAGCAGGAATCGACGGTGAGTTTGAACTTGTGTATTATTTATTAATTTCTGCTGTGCTAGTGGCTATAAGTAAAAAATAACGTTTGTTGTCGTTCTTGTGTGAAGCTGGTCCGAAGACAATATTCCAGATTATGAATGTGGAAGGGTTTACCAAAGAGAGTGCCTCAAACTATTTACAGGTTTGTTCTTTGTAATGGCGCACGTGTACTGTCTTGTACAACTCTTTTTTGTACACTTTTTAATAACCGACATGTGTGGAAAATGTCCAAGCGTACTGCTTGATGTAAAGTCTGAAACTCAAAATAGGCACACTTGGGGCCTGGTAATCGAGGCTCCCACCATTGGGGATTACTGGAAAGTTTGATTTTTTTTTTCAATATTGTTAATTTCAGTTATGTTTTAGCAGGAAGCAGCAGAATTAGTCTTCAGCTGCATATTCTGTTTCTGCATTATCATGTGGCATTCTAATCACGACCTAATAGTACATTTGATTGTTTCAGAGATATCGTCAATCTATGAACCTACGTGCTACTGCAATGGAACAGCATGTGAATGAATATGTGTCTCGAACTAACAAAAGTCAAGGAAAACGCCCTCTAGAAAAACAAGTTTTGATCAATGATCCAGATGCCGATCCGAAGGATCTCAGTAATTTTGTGCCTGTGCATATTCTTGACACTTCTGCTACTTTTCTTCCCTTGGAAAGCTCAAGTTGTCCGGAGTCACCTTTCAGGCAAAATCAGCTGTCCCTGCCATTGGAACAGCAAAGTCCTGCGCACACCACATCCAGCCTTGGTAGGTTTATAAACCGTGTTAATGATGATGTATCTGAAAAGATCAGCCAGGTTTTGAATACAGCAGATGGAGAAGTTTCTAATGCAGGACAACAGTTGAATTTTTCAACACCGCTGAGCTTTGACATGTGCGAACCATTATGCATGGTGCTTCCTATGCCGCCACTACCACCAGATGAAAAAGCATACTATGATAAGTTTTTTTATGCAAAAGAAACTCAGCTGTTTACTGATGAGGATTTGAAAATGTGGTTATCAACGATTCGAGGTATGAACATGCCAGTAATATATCATTGTGCGTGCGCTCGGGCCGCGAGCACGAGTGAGTCTACATTTTCTTCTTGTTTCTATTATTATTTACATATATTCTCCTTGTTATTTATCATTTTTGTTATTTTTTACTTTTTTGTTAAAAACTTCTAATTAGGCCACTTTGATTTGGCAGGCAATGTGAATGCTTTTGCTTGA

Protein sequence

>MS.gene019456.t1

MESDEFQSAAKLRRYHGPVAGVKVLVVDASSACRTIVSKMLLSLGYEVMTASLASDALSIIGEKKNEVNLVLVEVQLPDMEIYDLIGKMGENSNLPSFIMTAYDDDTPSISRALGFGAKWCFRKPVQISDLHDLWRFAVWNRYETTVIEAVPDFVWHLSDVIMATKGLECQPSMNTGEWSRQNAIGLEDQPFLNAGKKTLRSANGKEQEFPDKDNSVLLNRKRKSWTDDLHKKFLEAVEIAGIDAGPKTIFQIMNVEGFTKESASNYLQRYRQSMNLRATAMEQHVNEYVSRTNKSQGKRPLEKQVLINDPDADPKDLSNFVPVHILDTSATFLPLESSSCPESPFRQNQLSLPLEQQSPAHTTSSLGRFINRVNDDVSEKISQVLNTADGEVSNAGQQLNFSTPLSFDMCEPLCMVLPMPPLPPDEKAYYDKFFYAKETQLFTDEDLKMWLSTIRGHFDLAGNVNAFA