Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019456.t1 | XP_013444950.1 | 92.1 | 457 | 31 | 2 | 1 | 457 | 1 | 452 | 9.80E-220 | 772.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019456.t1 | Q5N6V8 | 26.7 | 344 | 195 | 8 | 21 | 332 | 9 | 327 | 1.2e-21 | 105.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019456.t1 | A0A072TZK7 | 92.1 | 457 | 31 | 2 | 1 | 457 | 1 | 452 | 7.0e-220 | 772.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene019456.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019456.t1 | MTR_8g032710 | 91.685 | 457 | 33 | 2 | 1 | 457 | 1 | 452 | 0.0 | 855 |
MS.gene019456.t1 | MTR_3g086100 | 32.046 | 259 | 148 | 8 | 20 | 272 | 15 | 251 | 2.10e-28 | 118 |
MS.gene019456.t1 | MTR_4g121020 | 32.000 | 275 | 154 | 6 | 20 | 287 | 33 | 281 | 2.55e-28 | 119 |
MS.gene019456.t1 | MTR_4g121020 | 32.000 | 275 | 154 | 6 | 20 | 287 | 33 | 281 | 2.71e-28 | 119 |
MS.gene019456.t1 | MTR_4g131600 | 29.921 | 254 | 155 | 5 | 20 | 272 | 22 | 253 | 6.03e-26 | 111 |
MS.gene019456.t1 | MTR_8g079940 | 29.615 | 260 | 151 | 7 | 20 | 272 | 27 | 261 | 6.35e-26 | 110 |
MS.gene019456.t1 | MTR_1g032570 | 30.566 | 265 | 147 | 8 | 20 | 272 | 13 | 252 | 2.51e-25 | 109 |
MS.gene019456.t1 | MTR_3g106220 | 28.906 | 256 | 162 | 6 | 21 | 272 | 11 | 250 | 8.86e-25 | 108 |
MS.gene019456.t1 | MTR_4g131570 | 27.799 | 259 | 165 | 5 | 20 | 275 | 19 | 258 | 4.05e-24 | 105 |
MS.gene019456.t1 | MTR_2g034960 | 28.625 | 269 | 170 | 5 | 20 | 287 | 31 | 278 | 6.40e-24 | 105 |
MS.gene019456.t1 | MTR_4g131580 | 27.907 | 258 | 161 | 6 | 21 | 275 | 20 | 255 | 6.31e-23 | 102 |
MS.gene019456.t1 | MTR_1g013170 | 28.906 | 256 | 158 | 5 | 21 | 272 | 8 | 243 | 9.25e-23 | 101 |
MS.gene019456.t1 | MTR_1g013180 | 27.652 | 264 | 173 | 5 | 21 | 283 | 159 | 405 | 2.66e-20 | 94.4 |
MS.gene019456.t1 | MTR_4g021760 | 28.063 | 253 | 136 | 7 | 21 | 272 | 14 | 221 | 4.14e-20 | 91.3 |
MS.gene019456.t1 | MTR_4g021790 | 26.415 | 265 | 147 | 8 | 20 | 283 | 12 | 229 | 4.17e-18 | 84.7 |
MS.gene019456.t1 | MTR_3g086100 | 29.208 | 202 | 115 | 8 | 77 | 272 | 1 | 180 | 1.51e-14 | 76.3 |
MS.gene019456.t1 | MTR_1g032570 | 27.885 | 208 | 113 | 8 | 77 | 272 | 1 | 183 | 1.68e-13 | 73.2 |
MS.gene019456.t1 | MTR_2g450070 | 30.252 | 119 | 82 | 1 | 21 | 139 | 21 | 138 | 2.60e-13 | 72.8 |
MS.gene019456.t1 | MTR_2g450070 | 30.252 | 119 | 82 | 1 | 21 | 139 | 21 | 138 | 2.61e-13 | 72.8 |
MS.gene019456.t1 | MTR_6g016850 | 34.426 | 122 | 76 | 3 | 20 | 139 | 11 | 130 | 6.89e-13 | 67.0 |
MS.gene019456.t1 | MTR_3g102600 | 30.328 | 122 | 84 | 1 | 21 | 142 | 11 | 131 | 6.57e-12 | 64.7 |
MS.gene019456.t1 | MTR_8g093040 | 32.258 | 124 | 80 | 2 | 22 | 142 | 18 | 140 | 8.40e-12 | 65.9 |
MS.gene019456.t1 | MTR_3g102600 | 29.412 | 136 | 87 | 2 | 21 | 156 | 11 | 137 | 9.69e-12 | 65.1 |
MS.gene019456.t1 | MTR_8g105600 | 30.833 | 120 | 82 | 1 | 20 | 139 | 11 | 129 | 2.09e-11 | 66.6 |
MS.gene019456.t1 | MTR_4g061360 | 30.469 | 128 | 84 | 3 | 18 | 142 | 85 | 210 | 4.28e-11 | 65.9 |
MS.gene019456.t1 | MTR_7g118260 | 26.404 | 178 | 119 | 5 | 18 | 184 | 10 | 186 | 8.92e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019456.t1 | AT3G16857 | 27.106 | 273 | 186 | 6 | 20 | 285 | 35 | 301 | 5.64e-25 | 108 |
MS.gene019456.t1 | AT3G16857 | 27.106 | 273 | 186 | 6 | 20 | 285 | 35 | 301 | 5.95e-25 | 108 |
MS.gene019456.t1 | AT2G25180 | 29.231 | 260 | 148 | 6 | 21 | 272 | 16 | 247 | 5.58e-24 | 105 |
MS.gene019456.t1 | AT2G01760 | 27.451 | 306 | 194 | 8 | 20 | 319 | 9 | 292 | 2.03e-23 | 102 |
MS.gene019456.t1 | AT1G67710 | 27.863 | 262 | 156 | 6 | 20 | 272 | 9 | 246 | 3.37e-23 | 102 |
MS.gene019456.t1 | AT4G31920 | 27.344 | 256 | 152 | 4 | 21 | 275 | 16 | 238 | 1.60e-22 | 100 |
MS.gene019456.t1 | AT5G58080 | 27.881 | 269 | 169 | 6 | 5 | 272 | 2 | 246 | 5.24e-21 | 96.7 |
MS.gene019456.t1 | AT2G01760 | 25.150 | 334 | 194 | 9 | 20 | 319 | 9 | 320 | 2.84e-18 | 87.0 |
MS.gene019456.t1 | AT5G07210 | 25.940 | 266 | 181 | 5 | 19 | 272 | 13 | 274 | 2.85e-17 | 85.1 |
MS.gene019456.t1 | AT3G16857 | 25.424 | 236 | 163 | 6 | 57 | 285 | 2 | 231 | 3.73e-17 | 84.7 |
MS.gene019456.t1 | AT1G49190 | 25.714 | 280 | 165 | 11 | 20 | 285 | 32 | 282 | 5.54e-17 | 83.2 |
MS.gene019456.t1 | AT3G62670 | 26.119 | 268 | 161 | 7 | 23 | 283 | 42 | 279 | 1.58e-16 | 82.0 |
MS.gene019456.t1 | AT5G07210 | 26.642 | 274 | 177 | 8 | 19 | 272 | 13 | 282 | 4.48e-15 | 78.2 |
MS.gene019456.t1 | AT5G49240 | 22.394 | 259 | 164 | 6 | 21 | 269 | 41 | 272 | 2.05e-13 | 71.2 |
MS.gene019456.t1 | AT2G40970 | 36.066 | 122 | 62 | 2 | 219 | 339 | 103 | 209 | 5.00e-13 | 69.3 |
MS.gene019456.t1 | AT4G00760 | 29.557 | 203 | 134 | 5 | 40 | 238 | 1 | 198 | 5.59e-13 | 70.5 |
MS.gene019456.t1 | AT2G27070 | 24.727 | 275 | 176 | 10 | 19 | 272 | 13 | 277 | 3.61e-12 | 68.9 |
Find 108 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTAGACCAATTGCATTT+TGG | 0.197726 | 8.1:-68865026 | None:intergenic |
ATATCACGGGCTCTTGGTTT+TGG | 0.233266 | 8.1:+68864811 | MS.gene019456:CDS |
ATATGATCTCATAGGGAAAA+TGG | 0.247633 | 8.1:+68864626 | MS.gene019456:CDS |
GAGTGCCTCAAACTATTTAC+AGG | 0.272286 | 8.1:+68865359 | MS.gene019456:CDS |
GTTGTCCGGAGTCACCTTTC+AGG | 0.273076 | 8.1:+68865913 | MS.gene019456:CDS |
ATTCTTCTTCTCACCGATAA+TGG | 0.281588 | 8.1:-68864556 | None:intergenic |
AGTACTGAGTTATCTTTATC+AGG | 0.287313 | 8.1:-68865114 | None:intergenic |
TGATTTACATAAGAAGTTCT+TGG | 0.299908 | 8.1:+68865167 | MS.gene019456:CDS |
ATAGTTTGAGGCACTCTCTT+TGG | 0.318103 | 8.1:-68865352 | None:intergenic |
TCCGATGCATTATCCATTAT+CGG | 0.329441 | 8.1:+68864543 | MS.gene019456:CDS |
CTAATTAGGCCACTTTGATT+TGG | 0.334246 | 8.1:+68866415 | MS.gene019456:intron |
ATGGAAATATATGATCTCAT+AGG | 0.352251 | 8.1:+68864618 | MS.gene019456:CDS |
AAAACCAAGAGCCCGTGATA+TGG | 0.366143 | 8.1:-68864809 | None:intergenic |
AGATCCTTCGGATCGGCATC+TGG | 0.369128 | 8.1:-68865825 | None:intergenic |
ACCCTTCCACATTCATAATC+TGG | 0.374739 | 8.1:-68865326 | None:intergenic |
TGGCTTTCTAAAACACCATT+TGG | 0.375414 | 8.1:-68864836 | None:intergenic |
CTTCTTTCACTTGGATATGA+AGG | 0.378032 | 8.1:+68864097 | MS.gene019456:CDS |
CAATGACTGTTGTTTCATAT+CGG | 0.387086 | 8.1:-68864906 | None:intergenic |
GCATCTGTCAGATGTGATTA+TGG | 0.389198 | 8.1:+68864951 | MS.gene019456:CDS |
TCCTCAGCTTCGCCGCTGAC+TGG | 0.399441 | 8.1:-68863994 | None:intergenic |
TTTCTGATCTACATGACCTT+TGG | 0.412759 | 8.1:+68864866 | MS.gene019456:CDS |
AGATCATATATTTCCATGTC+TGG | 0.416853 | 8.1:-68864612 | None:intergenic |
GACTTTGCTGTTCCAATGGC+AGG | 0.429908 | 8.1:-68865950 | None:intergenic |
TTAGGCCACTTTGATTTGGC+AGG | 0.436132 | 8.1:+68866419 | MS.gene019456:intron |
AGACCATTCTCCTGTATTCA+TGG | 0.436149 | 8.1:-68865001 | None:intergenic |
CCTTCCATATCACGGGCTCT+TGG | 0.439741 | 8.1:+68864805 | MS.gene019456:CDS |
ATAACTCAGTACTCCTGAAC+AGG | 0.440547 | 8.1:+68865124 | MS.gene019456:CDS |
CAGTACTCCTGAACAGGAAA+AGG | 0.443080 | 8.1:+68865130 | MS.gene019456:CDS |
CTTGGAAAGCTCAAGTTGTC+CGG | 0.445175 | 8.1:+68865899 | MS.gene019456:CDS |
GACAGATGCCACACGAAGTC+AGG | 0.457217 | 8.1:-68864937 | None:intergenic |
ATAATCTGGAATATTGTCTT+CGG | 0.459039 | 8.1:-68865312 | None:intergenic |
CTCCTGTATTCATGGATGGT+TGG | 0.460192 | 8.1:-68864993 | None:intergenic |
TATGATCTCATAGGGAAAAT+GGG | 0.464740 | 8.1:+68864627 | MS.gene019456:CDS |
GTTGGTTGTGGATGCTAGTT+CGG | 0.466592 | 8.1:+68864048 | MS.gene019456:CDS |
TTGGAAGCTGTTGAAATAGC+AGG | 0.471879 | 8.1:+68865186 | MS.gene019456:CDS |
AAATCAGCTGTCCCTGCCAT+TGG | 0.472311 | 8.1:+68865938 | MS.gene019456:CDS |
TGAACAGGAAAAGGAAAAGC+TGG | 0.472904 | 8.1:+68865139 | MS.gene019456:CDS |
AAGTGCAAATGGTAAAGAAC+AGG | 0.480421 | 8.1:+68865086 | MS.gene019456:CDS |
TGTAGATCAGAAATCTGAAC+TGG | 0.485157 | 8.1:-68864856 | None:intergenic |
AAGACTCTCCGAAGTGCAAA+TGG | 0.488236 | 8.1:+68865075 | MS.gene019456:CDS |
TCCAGTCAGCGGCGAAGCTG+AGG | 0.492869 | 8.1:+68863993 | MS.gene019456:CDS |
TGCCAACCATCCATGAATAC+AGG | 0.500767 | 8.1:+68864991 | MS.gene019456:CDS |
TGGAAATATATGATCTCATA+GGG | 0.502031 | 8.1:+68864619 | MS.gene019456:CDS |
ACAAACCTGTAAATAGTTTG+AGG | 0.502869 | 8.1:-68865364 | None:intergenic |
TGGTCTCGCCAAAATGCAAT+TGG | 0.505607 | 8.1:+68865018 | MS.gene019456:CDS |
CATCTGCTGTATTCAAAACC+TGG | 0.512978 | 8.1:-68866043 | None:intergenic |
TTCCTGCATTCAAGAACGGT+TGG | 0.513403 | 8.1:-68865050 | None:intergenic |
GACCAACCGTTCTTGAATGC+AGG | 0.521642 | 8.1:+68865048 | MS.gene019456:CDS |
TCTGGTGGTAGTGGCGGCAT+AGG | 0.521933 | 8.1:-68866149 | None:intergenic |
ATAGGAAGCACCATGCATAA+TGG | 0.522991 | 8.1:-68866131 | None:intergenic |
GATGGAGAAGTTTCTAATGC+AGG | 0.527317 | 8.1:+68866062 | MS.gene019456:CDS |
CATTCTCCTGTATTCATGGA+TGG | 0.527538 | 8.1:-68864997 | None:intergenic |
TTCCAGATTATGAATGTGGA+AGG | 0.529710 | 8.1:+68865324 | MS.gene019456:CDS |
GAACCTACGTGCTACTGCAA+TGG | 0.529949 | 8.1:+68865719 | MS.gene019456:CDS |
GTTCTTTACCATTTGCACTT+CGG | 0.531052 | 8.1:-68865083 | None:intergenic |
AACTCAGCTGTTTACTGATG+AGG | 0.532043 | 8.1:+68866211 | MS.gene019456:CDS |
TACTAGAACTTACTGAAAGA+CGG | 0.532803 | 8.1:-68864666 | None:intergenic |
GGAGGTTCAGTTGCCAGACA+TGG | 0.533668 | 8.1:+68864599 | MS.gene019456:CDS |
ACAAAATTACTGAGATCCTT+CGG | 0.535642 | 8.1:-68865837 | None:intergenic |
AGGTACCATGGTCCAGTAGC+CGG | 0.537071 | 8.1:+68864016 | MS.gene019456:CDS |
TGAGGTTAACCTTGTGCTTG+TGG | 0.538862 | 8.1:+68864578 | MS.gene019456:CDS |
GTTTATAAACCTACCAAGGC+TGG | 0.543151 | 8.1:-68865988 | None:intergenic |
ACTAGAACTTACTGAAAGAC+GGG | 0.544678 | 8.1:-68864665 | None:intergenic |
GCGCACACCACATCCAGCCT+TGG | 0.545507 | 8.1:+68865975 | MS.gene019456:CDS |
TCTTTCAATACTAGTTATGA+CGG | 0.548526 | 8.1:+68864509 | MS.gene019456:intron |
CGGACAACTTGAGCTTTCCA+AGG | 0.549307 | 8.1:-68865898 | None:intergenic |
GCAGGACTTTGCTGTTCCAA+TGG | 0.549979 | 8.1:-68865954 | None:intergenic |
AAACCTACCAAGGCTGGATG+TGG | 0.553582 | 8.1:-68865982 | None:intergenic |
CTGATGAGGATTTGAAAATG+TGG | 0.559224 | 8.1:+68866225 | MS.gene019456:CDS |
AATATTCCAGATTATGAATG+TGG | 0.565218 | 8.1:+68865320 | MS.gene019456:CDS |
AGGCTGGATGTGGTGTGCGC+AGG | 0.568764 | 8.1:-68865972 | None:intergenic |
ATGATACTCCTTCCATATCA+CGG | 0.568950 | 8.1:+68864797 | MS.gene019456:CDS |
CATCCATGAATACAGGAGAA+TGG | 0.575042 | 8.1:+68864998 | MS.gene019456:CDS |
TGATACTCCTTCCATATCAC+GGG | 0.577985 | 8.1:+68864798 | MS.gene019456:CDS |
TGGTTGGCATTCGAGACCCT+TGG | 0.583630 | 8.1:-68864977 | None:intergenic |
AGTCAGCGGCGAAGCTGAGG+AGG | 0.585284 | 8.1:+68863996 | MS.gene019456:CDS |
ACACCACATCCAGCCTTGGT+AGG | 0.587197 | 8.1:+68865979 | MS.gene019456:CDS |
TCCACACTGCGAATCGCCAA+AGG | 0.589805 | 8.1:-68864882 | None:intergenic |
TGATCCAGATGCCGATCCGA+AGG | 0.594251 | 8.1:+68865821 | MS.gene019456:CDS |
ACCGATAATGGATAATGCAT+CGG | 0.594739 | 8.1:-68864544 | None:intergenic |
TCCAGATTATGAATGTGGAA+GGG | 0.595446 | 8.1:+68865325 | MS.gene019456:CDS |
ACTTTGCTGTTCCAATGGCA+GGG | 0.595685 | 8.1:-68865949 | None:intergenic |
CCAAGAGCCCGTGATATGGA+AGG | 0.596254 | 8.1:-68864805 | None:intergenic |
CAGATACATCATCATTAACA+CGG | 0.604526 | 8.1:-68866010 | None:intergenic |
GGACAACTTGAGCTTTCCAA+GGG | 0.606529 | 8.1:-68865897 | None:intergenic |
TCTCGAACTAACAAAAGTCA+AGG | 0.607987 | 8.1:+68865765 | MS.gene019456:CDS |
AGATGTGATTATGGCAACCA+AGG | 0.609212 | 8.1:+68864960 | MS.gene019456:CDS |
ACCTTTGGCGATTCGCAGTG+TGG | 0.611049 | 8.1:+68864881 | MS.gene019456:CDS |
ATGTGGTTATCAACGATTCG+AGG | 0.613048 | 8.1:+68866242 | MS.gene019456:CDS |
CACGGTTTATAAACCTACCA+AGG | 0.615074 | 8.1:-68865992 | None:intergenic |
TTACACCGGCTACTGGACCA+TGG | 0.619788 | 8.1:-68864021 | None:intergenic |
AGTAGCCGGTGTAAAAGTGT+TGG | 0.620685 | 8.1:+68864030 | MS.gene019456:CDS |
GGTTAACCTTGTGCTTGTGG+AGG | 0.621345 | 8.1:+68864581 | MS.gene019456:CDS |
TGTATCTGAAAAGATCAGCC+AGG | 0.622080 | 8.1:+68866025 | MS.gene019456:CDS |
GATGTGATTATGGCAACCAA+GGG | 0.624431 | 8.1:+68864961 | MS.gene019456:CDS |
CATTGCCTGCCAAATCAAAG+TGG | 0.629641 | 8.1:-68866424 | None:intergenic |
GAAGTGTCAAGAATATGCAC+AGG | 0.635227 | 8.1:-68865861 | None:intergenic |
GTTGAAATAGCAGGAATCGA+CGG | 0.638995 | 8.1:+68865195 | MS.gene019456:CDS |
GTCTGACGAGTTCCAGTCAG+CGG | 0.643494 | 8.1:+68863982 | MS.gene019456:CDS |
TATCGGTGAGAAGAAGAATG+AGG | 0.648400 | 8.1:+68864560 | MS.gene019456:CDS |
GCGAAGCTGAGGAGGTACCA+TGG | 0.649372 | 8.1:+68864004 | MS.gene019456:CDS |
CGGTGTAAAAGTGTTGGTTG+TGG | 0.652064 | 8.1:+68864036 | MS.gene019456:CDS |
AAGCAGTACCTGACTTCGTG+TGG | 0.652087 | 8.1:+68864929 | MS.gene019456:CDS |
ACTGAACCTCCACAAGCACA+AGG | 0.665135 | 8.1:-68864587 | None:intergenic |
ATTACTGAGATCCTTCGGAT+CGG | 0.667987 | 8.1:-68865832 | None:intergenic |
GTTCCATTGCAGTAGCACGT+AGG | 0.677485 | 8.1:-68865722 | None:intergenic |
CATGTGCGAACCATTATGCA+TGG | 0.704435 | 8.1:+68866121 | MS.gene019456:CDS |
TCGCACATGTCAAAGCTCAG+CGG | 0.744624 | 8.1:-68866107 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTTCAAAAATAAATAAAAA+TGG | - | chr8.1:68864475-68864494 | None:intergenic | 10.0% |
!! | AACAAAAATGATAAATAACA+AGG | - | chr8.1:68866369-68866388 | None:intergenic | 15.0% |
!! | ATCAATATGATTATTCATTA+TGG | + | chr8.1:68864270-68864289 | MS.gene019456:intron | 15.0% |
!! | TTTGTTAAAAACTTCTAATT+AGG | + | chr8.1:68866401-68866420 | MS.gene019456:intron | 15.0% |
!!! | AATAATCATATTGATTTCTA+TGG | - | chr8.1:68864265-68864284 | None:intergenic | 15.0% |
!! | AAACAATCAAATGTACTATT+AGG | - | chr8.1:68865679-68865698 | None:intergenic | 20.0% |
!!! | TTTTCAATTTTTGCTTCTTA+AGG | + | chr8.1:68864427-68864446 | MS.gene019456:intron | 20.0% |
! | AATATTCCAGATTATGAATG+TGG | + | chr8.1:68865320-68865339 | MS.gene019456:CDS | 25.0% |
! | ATGGAAATATATGATCTCAT+AGG | + | chr8.1:68864618-68864637 | MS.gene019456:CDS | 25.0% |
! | GAAGCAAAAATTGAAAATCA+CGG | - | chr8.1:68864424-68864443 | None:intergenic | 25.0% |
! | TAGATAAACAGCTAGAAATA+TGG | - | chr8.1:68864238-68864257 | None:intergenic | 25.0% |
! | TCTTTCAATACTAGTTATGA+CGG | + | chr8.1:68864509-68864528 | MS.gene019456:intron | 25.0% |
! | TGATTTACATAAGAAGTTCT+TGG | + | chr8.1:68865167-68865186 | MS.gene019456:CDS | 25.0% |
! | TGGAAATATATGATCTCATA+GGG | + | chr8.1:68864619-68864638 | MS.gene019456:CDS | 25.0% |
!! | ATAATCTGGAATATTGTCTT+CGG | - | chr8.1:68865315-68865334 | None:intergenic | 25.0% |
!! | GCATTTTTGATACAATTGTT+CGG | - | chr8.1:68864078-68864097 | None:intergenic | 25.0% |
!! | GTAAGTTCTAGTAATAACTT+TGG | + | chr8.1:68864676-68864695 | MS.gene019456:intron | 25.0% |
!! | TAAAGTCTGAAACTCAAAAT+AGG | + | chr8.1:68865486-68865505 | MS.gene019456:intron | 25.0% |
!! | TGGAAATATCTGAAACTTTA+AGG | - | chr8.1:68864218-68864237 | None:intergenic | 25.0% |
!!! | AATTTCAGTTATGTTTTAGC+AGG | + | chr8.1:68865586-68865605 | MS.gene019456:intron | 25.0% |
!!! | ATCAAAACTTGTTTTTCTAG+AGG | - | chr8.1:68865798-68865817 | None:intergenic | 25.0% |
!!! | TCAAAACTTGTTTTTCTAGA+GGG | - | chr8.1:68865797-68865816 | None:intergenic | 25.0% |
AAGGTAATTGACACTTATTC+TGG | + | chr8.1:68864116-68864135 | MS.gene019456:intron | 30.0% | |
ACAAAATTACTGAGATCCTT+CGG | - | chr8.1:68865840-68865859 | None:intergenic | 30.0% | |
ACAAACCTGTAAATAGTTTG+AGG | - | chr8.1:68865367-68865386 | None:intergenic | 30.0% | |
AGATCATATATTTCCATGTC+TGG | - | chr8.1:68864615-68864634 | None:intergenic | 30.0% | |
ATATGATCTCATAGGGAAAA+TGG | + | chr8.1:68864626-68864645 | MS.gene019456:CDS | 30.0% | |
CAGATACATCATCATTAACA+CGG | - | chr8.1:68866013-68866032 | None:intergenic | 30.0% | |
CTTCTTAAGGCTAAACTATT+GGG | + | chr8.1:68864440-68864459 | MS.gene019456:intron | 30.0% | |
TACTAGAACTTACTGAAAGA+CGG | - | chr8.1:68864669-68864688 | None:intergenic | 30.0% | |
TATGATCTCATAGGGAAAAT+GGG | + | chr8.1:68864627-68864646 | MS.gene019456:CDS | 30.0% | |
TCAAAAATGCTTCTTTCACT+TGG | + | chr8.1:68864088-68864107 | MS.gene019456:CDS | 30.0% | |
! | AGTACTGAGTTATCTTTATC+AGG | - | chr8.1:68865117-68865136 | None:intergenic | 30.0% |
! | TACAGGTTTGTTCTTTGTAA+TGG | + | chr8.1:68865376-68865395 | MS.gene019456:intron | 30.0% |
! | TTTTTAATAACCGACATGTG+TGG | + | chr8.1:68865437-68865456 | MS.gene019456:intron | 30.0% |
!! | CAATGACTGTTGTTTCATAT+CGG | - | chr8.1:68864909-68864928 | None:intergenic | 30.0% |
!!! | TCATAGTATGCTTTTTCATC+TGG | - | chr8.1:68866170-68866189 | None:intergenic | 30.0% |
!!! | TTTTTTCCTGCATTCAAGAA+CGG | - | chr8.1:68865057-68865076 | None:intergenic | 30.0% |
AAACTCAAAATAGGCACACT+TGG | + | chr8.1:68865495-68865514 | MS.gene019456:intron | 35.0% | |
AACTCAAAATAGGCACACTT+GGG | + | chr8.1:68865496-68865515 | MS.gene019456:intron | 35.0% | |
AAGTGCAAATGGTAAAGAAC+AGG | + | chr8.1:68865086-68865105 | MS.gene019456:CDS | 35.0% | |
ACTAGAACTTACTGAAAGAC+GGG | - | chr8.1:68864668-68864687 | None:intergenic | 35.0% | |
ATGATACTCCTTCCATATCA+CGG | + | chr8.1:68864797-68864816 | MS.gene019456:CDS | 35.0% | |
ATTAATTTCTGCTGTGCTAG+TGG | + | chr8.1:68865242-68865261 | MS.gene019456:intron | 35.0% | |
ATTCTTCTTCTCACCGATAA+TGG | - | chr8.1:68864559-68864578 | None:intergenic | 35.0% | |
CACGCACAATGATATATTAC+TGG | - | chr8.1:68866278-68866297 | None:intergenic | 35.0% | |
CTGATGAGGATTTGAAAATG+TGG | + | chr8.1:68866225-68866244 | MS.gene019456:CDS | 35.0% | |
CTTCTTTCACTTGGATATGA+AGG | + | chr8.1:68864097-68864116 | MS.gene019456:CDS | 35.0% | |
GCTTCTTAAGGCTAAACTAT+TGG | + | chr8.1:68864439-68864458 | MS.gene019456:intron | 35.0% | |
GTTCTTTACCATTTGCACTT+CGG | - | chr8.1:68865086-68865105 | None:intergenic | 35.0% | |
TCCAGATTATGAATGTGGAA+GGG | + | chr8.1:68865325-68865344 | MS.gene019456:CDS | 35.0% | |
TCCGATGCATTATCCATTAT+CGG | + | chr8.1:68864543-68864562 | MS.gene019456:CDS | 35.0% | |
TCTCGAACTAACAAAAGTCA+AGG | + | chr8.1:68865765-68865784 | MS.gene019456:CDS | 35.0% | |
TGTAGATCAGAAATCTGAAC+TGG | - | chr8.1:68864859-68864878 | None:intergenic | 35.0% | |
TTCCAGATTATGAATGTGGA+AGG | + | chr8.1:68865324-68865343 | MS.gene019456:CDS | 35.0% | |
TTTCTGATCTACATGACCTT+TGG | + | chr8.1:68864866-68864885 | MS.gene019456:CDS | 35.0% | |
! | CTAATTAGGCCACTTTGATT+TGG | + | chr8.1:68866415-68866434 | MS.gene019456:intron | 35.0% |
! | CTTCTAGACCAATTGCATTT+TGG | - | chr8.1:68865029-68865048 | None:intergenic | 35.0% |
!! | ACCGATAATGGATAATGCAT+CGG | - | chr8.1:68864547-68864566 | None:intergenic | 35.0% |
!! | TCTGTTTCTGCATTATCATG+TGG | + | chr8.1:68865639-68865658 | MS.gene019456:intron | 35.0% |
!! | TGGCTTTCTAAAACACCATT+TGG | - | chr8.1:68864839-68864858 | None:intergenic | 35.0% |
!!! | TAGTATGCTTTTTCATCTGG+TGG | - | chr8.1:68866167-68866186 | None:intergenic | 35.0% |
AACTCAGCTGTTTACTGATG+AGG | + | chr8.1:68866211-68866230 | MS.gene019456:CDS | 40.0% | |
AACTTTCCAGTAATCCCCAA+TGG | - | chr8.1:68865543-68865562 | None:intergenic | 40.0% | |
ACCCTTCCACATTCATAATC+TGG | - | chr8.1:68865329-68865348 | None:intergenic | 40.0% | |
ACTCAAAATAGGCACACTTG+GGG | + | chr8.1:68865497-68865516 | MS.gene019456:intron | 40.0% | |
AGACCATTCTCCTGTATTCA+TGG | - | chr8.1:68865004-68865023 | None:intergenic | 40.0% | |
AGATGTGATTATGGCAACCA+AGG | + | chr8.1:68864960-68864979 | MS.gene019456:CDS | 40.0% | |
ATAACTCAGTACTCCTGAAC+AGG | + | chr8.1:68865124-68865143 | MS.gene019456:CDS | 40.0% | |
ATGTGGTTATCAACGATTCG+AGG | + | chr8.1:68866242-68866261 | MS.gene019456:CDS | 40.0% | |
ATTACTGAGATCCTTCGGAT+CGG | - | chr8.1:68865835-68865854 | None:intergenic | 40.0% | |
CACGGTTTATAAACCTACCA+AGG | - | chr8.1:68865995-68866014 | None:intergenic | 40.0% | |
CATCCATGAATACAGGAGAA+TGG | + | chr8.1:68864998-68865017 | MS.gene019456:CDS | 40.0% | |
CATCTGCTGTATTCAAAACC+TGG | - | chr8.1:68866046-68866065 | None:intergenic | 40.0% | |
CATTCTCCTGTATTCATGGA+TGG | - | chr8.1:68865000-68865019 | None:intergenic | 40.0% | |
GAGTGCCTCAAACTATTTAC+AGG | + | chr8.1:68865359-68865378 | MS.gene019456:CDS | 40.0% | |
GATGGAGAAGTTTCTAATGC+AGG | + | chr8.1:68866062-68866081 | MS.gene019456:CDS | 40.0% | |
GATGTGATTATGGCAACCAA+GGG | + | chr8.1:68864961-68864980 | MS.gene019456:CDS | 40.0% | |
GCATCTGTCAGATGTGATTA+TGG | + | chr8.1:68864951-68864970 | MS.gene019456:CDS | 40.0% | |
GTTGAAATAGCAGGAATCGA+CGG | + | chr8.1:68865195-68865214 | MS.gene019456:CDS | 40.0% | |
GTTTATAAACCTACCAAGGC+TGG | - | chr8.1:68865991-68866010 | None:intergenic | 40.0% | |
TATCGGTGAGAAGAAGAATG+AGG | + | chr8.1:68864560-68864579 | MS.gene019456:CDS | 40.0% | |
TGAACAGGAAAAGGAAAAGC+TGG | + | chr8.1:68865139-68865158 | MS.gene019456:CDS | 40.0% | |
TGATACTCCTTCCATATCAC+GGG | + | chr8.1:68864798-68864817 | MS.gene019456:CDS | 40.0% | |
TGTATCTGAAAAGATCAGCC+AGG | + | chr8.1:68866025-68866044 | MS.gene019456:CDS | 40.0% | |
TTGGAAGCTGTTGAAATAGC+AGG | + | chr8.1:68865186-68865205 | MS.gene019456:CDS | 40.0% | |
TTTACATCAAGCAGTACGCT+TGG | - | chr8.1:68865470-68865489 | None:intergenic | 40.0% | |
! | AGCTTTTCCTTTTCCTGTTC+AGG | - | chr8.1:68865140-68865159 | None:intergenic | 40.0% |
! | ATAGTTTGAGGCACTCTCTT+TGG | - | chr8.1:68865355-68865374 | None:intergenic | 40.0% |
! | CACAACCAACACTTTTACAC+CGG | - | chr8.1:68864038-68864057 | None:intergenic | 40.0% |
! | GAAGTGTCAAGAATATGCAC+AGG | - | chr8.1:68865864-68865883 | None:intergenic | 40.0% |
! | TGGACATTTTCCACACATGT+CGG | - | chr8.1:68865450-68865469 | None:intergenic | 40.0% |
!! | ATAGGAAGCACCATGCATAA+TGG | - | chr8.1:68866134-68866153 | None:intergenic | 40.0% |
!!! | CAGGTTTTGAATACAGCAGA+TGG | + | chr8.1:68866044-68866063 | MS.gene019456:CDS | 40.0% |
!!! | TTCTGCTACTTTTCTTCCCT+TGG | + | chr8.1:68865881-68865900 | MS.gene019456:CDS | 40.0% |
AAAACCAAGAGCCCGTGATA+TGG | - | chr8.1:68864812-68864831 | None:intergenic | 45.0% | |
AAGACTCTCCGAAGTGCAAA+TGG | + | chr8.1:68865075-68865094 | MS.gene019456:CDS | 45.0% | |
ACTACTGCACTCACATTTCG+TGG | + | chr8.1:68864189-68864208 | MS.gene019456:intron | 45.0% | |
CAGTACTCCTGAACAGGAAA+AGG | + | chr8.1:68865130-68865149 | MS.gene019456:CDS | 45.0% | |
CATGTGCGAACCATTATGCA+TGG | + | chr8.1:68866121-68866140 | MS.gene019456:CDS | 45.0% | |
CATTGCCTGCCAAATCAAAG+TGG | - | chr8.1:68866427-68866446 | None:intergenic | 45.0% | |
CTCCTGTATTCATGGATGGT+TGG | - | chr8.1:68864996-68865015 | None:intergenic | 45.0% | |
GGACAACTTGAGCTTTCCAA+GGG | - | chr8.1:68865900-68865919 | None:intergenic | 45.0% | |
GTTGGTTGTGGATGCTAGTT+CGG | + | chr8.1:68864048-68864067 | MS.gene019456:CDS | 45.0% | |
TATATCATTGTGCGTGCGCT+CGG | + | chr8.1:68866282-68866301 | MS.gene019456:intron | 45.0% | |
TGAGGTTAACCTTGTGCTTG+TGG | + | chr8.1:68864578-68864597 | MS.gene019456:CDS | 45.0% | |
TGCCAACCATCCATGAATAC+AGG | + | chr8.1:68864991-68865010 | MS.gene019456:CDS | 45.0% | |
TGGTCTCGCCAAAATGCAAT+TGG | + | chr8.1:68865018-68865037 | MS.gene019456:CDS | 45.0% | |
TTCCAGTAATCCCCAATGGT+GGG | - | chr8.1:68865539-68865558 | None:intergenic | 45.0% | |
TTCCTGCATTCAAGAACGGT+TGG | - | chr8.1:68865053-68865072 | None:intergenic | 45.0% | |
TTGTCGTTCTTGTGTGAAGC+TGG | + | chr8.1:68865288-68865307 | MS.gene019456:intron | 45.0% | |
TTTCCAGTAATCCCCAATGG+TGG | - | chr8.1:68865540-68865559 | None:intergenic | 45.0% | |
! | AGTAGCCGGTGTAAAAGTGT+TGG | + | chr8.1:68864030-68864049 | MS.gene019456:CDS | 45.0% |
! | ATATCACGGGCTCTTGGTTT+TGG | + | chr8.1:68864811-68864830 | MS.gene019456:CDS | 45.0% |
! | CTTGGAAAGCTCAAGTTGTC+CGG | + | chr8.1:68865899-68865918 | MS.gene019456:CDS | 45.0% |
! | TTTTGCCTGAAAGGTGACTC+CGG | - | chr8.1:68865921-68865940 | None:intergenic | 45.0% |
!! | AACACTTTTACACCGGCTAC+TGG | - | chr8.1:68864031-68864050 | None:intergenic | 45.0% |
!! | ACTTTGCTGTTCCAATGGCA+GGG | - | chr8.1:68865952-68865971 | None:intergenic | 45.0% |
!! | CGGTGTAAAAGTGTTGGTTG+TGG | + | chr8.1:68864036-68864055 | MS.gene019456:CDS | 45.0% |
!! | GACAGCTGATTTTGCCTGAA+AGG | - | chr8.1:68865930-68865949 | None:intergenic | 45.0% |
!! | TTAGGCCACTTTGATTTGGC+AGG | + | chr8.1:68866419-68866438 | MS.gene019456:intron | 45.0% |
!!! | CTCTTGGTTTTGGAGCCAAA+TGG | + | chr8.1:68864821-68864840 | MS.gene019456:CDS | 45.0% |
!!! | GCTTTTTCATCTGGTGGTAG+TGG | - | chr8.1:68866161-68866180 | None:intergenic | 45.0% |
!!! | TTTTCATCTGGTGGTAGTGG+CGG | - | chr8.1:68866158-68866177 | None:intergenic | 45.0% |
!!! | ATTTTTTATATTTATATTTC+TGG | + | chr8.1:68864151-68864170 | MS.gene019456:intron | 5.0% |
AAACCTACCAAGGCTGGATG+TGG | - | chr8.1:68865985-68866004 | None:intergenic | 50.0% | |
AAATCAGCTGTCCCTGCCAT+TGG | + | chr8.1:68865938-68865957 | MS.gene019456:CDS | 50.0% | |
AAGCAGTACCTGACTTCGTG+TGG | + | chr8.1:68864929-68864948 | MS.gene019456:CDS | 50.0% | |
ACTGAACCTCCACAAGCACA+AGG | - | chr8.1:68864590-68864609 | None:intergenic | 50.0% | |
ATATCATTGTGCGTGCGCTC+GGG | + | chr8.1:68866283-68866302 | MS.gene019456:intron | 50.0% | |
ATCTCAGCGACAAGCATGTG+CGG | - | chr8.1:68864720-68864739 | None:intergenic | 50.0% | |
CGGACAACTTGAGCTTTCCA+AGG | - | chr8.1:68865901-68865920 | None:intergenic | 50.0% | |
GACCAACCGTTCTTGAATGC+AGG | + | chr8.1:68865048-68865067 | MS.gene019456:CDS | 50.0% | |
GGTTAACCTTGTGCTTGTGG+AGG | + | chr8.1:68864581-68864600 | MS.gene019456:CDS | 50.0% | |
GTTCCATTGCAGTAGCACGT+AGG | - | chr8.1:68865725-68865744 | None:intergenic | 50.0% | |
TAATCGAGGCTCCCACCATT+GGG | + | chr8.1:68865525-68865544 | MS.gene019456:intron | 50.0% | |
TCGCACATGTCAAAGCTCAG+CGG | - | chr8.1:68866110-68866129 | None:intergenic | 50.0% | |
! | GAACCTACGTGCTACTGCAA+TGG | + | chr8.1:68865719-68865738 | MS.gene019456:CDS | 50.0% |
!! | GACTTTGCTGTTCCAATGGC+AGG | - | chr8.1:68865953-68865972 | None:intergenic | 50.0% |
!! | GCAGGACTTTGCTGTTCCAA+TGG | - | chr8.1:68865957-68865976 | None:intergenic | 50.0% |
AAATAGGCACACTTGGGGCC+TGG | + | chr8.1:68865502-68865521 | MS.gene019456:intron | 55.0% | |
AATCGAGGCTCCCACCATTG+GGG | + | chr8.1:68865526-68865545 | MS.gene019456:intron | 55.0% | |
ACACCACATCCAGCCTTGGT+AGG | + | chr8.1:68865979-68865998 | MS.gene019456:CDS | 55.0% | |
ACCTTTGGCGATTCGCAGTG+TGG | + | chr8.1:68864881-68864900 | MS.gene019456:CDS | 55.0% | |
AGATCCTTCGGATCGGCATC+TGG | - | chr8.1:68865828-68865847 | None:intergenic | 55.0% | |
AGGTACCATGGTCCAGTAGC+CGG | + | chr8.1:68864016-68864035 | MS.gene019456:CDS | 55.0% | |
CCAAGAGCCCGTGATATGGA+AGG | - | chr8.1:68864808-68864827 | None:intergenic | 55.0% | |
CCTTCCATATCACGGGCTCT+TGG | + | chr8.1:68864805-68864824 | MS.gene019456:CDS | 55.0% | |
CTCCCACCATTGGGGATTAC+TGG | + | chr8.1:68865534-68865553 | MS.gene019456:intron | 55.0% | |
GACAGATGCCACACGAAGTC+AGG | - | chr8.1:68864940-68864959 | None:intergenic | 55.0% | |
GGAGGTTCAGTTGCCAGACA+TGG | + | chr8.1:68864599-68864618 | MS.gene019456:CDS | 55.0% | |
GTAATCGAGGCTCCCACCAT+TGG | + | chr8.1:68865524-68865543 | MS.gene019456:intron | 55.0% | |
GTCTGACGAGTTCCAGTCAG+CGG | + | chr8.1:68863982-68864001 | MS.gene019456:CDS | 55.0% | |
GTTGTCCGGAGTCACCTTTC+AGG | + | chr8.1:68865913-68865932 | MS.gene019456:CDS | 55.0% | |
TCCACACTGCGAATCGCCAA+AGG | - | chr8.1:68864885-68864904 | None:intergenic | 55.0% | |
TGATCCAGATGCCGATCCGA+AGG | + | chr8.1:68865821-68865840 | MS.gene019456:CDS | 55.0% | |
TGGTTGGCATTCGAGACCCT+TGG | - | chr8.1:68864980-68864999 | None:intergenic | 55.0% | |
TGTAGACTCACTCGTGCTCG+CGG | - | chr8.1:68866309-68866328 | None:intergenic | 55.0% | |
! | TTACACCGGCTACTGGACCA+TGG | - | chr8.1:68864024-68864043 | None:intergenic | 55.0% |
CACTTGGGGCCTGGTAATCG+AGG | + | chr8.1:68865511-68865530 | MS.gene019456:intron | 60.0% | |
TGGTGGGAGCCTCGATTACC+AGG | - | chr8.1:68865523-68865542 | None:intergenic | 60.0% | |
!! | GCGAAGCTGAGGAGGTACCA+TGG | + | chr8.1:68864004-68864023 | MS.gene019456:CDS | 60.0% |
!! | TCTGGTGGTAGTGGCGGCAT+AGG | - | chr8.1:68866152-68866171 | None:intergenic | 60.0% |
AGGCTGGATGTGGTGTGCGC+AGG | - | chr8.1:68865975-68865994 | None:intergenic | 65.0% | |
AGTCAGCGGCGAAGCTGAGG+AGG | + | chr8.1:68863996-68864015 | MS.gene019456:CDS | 65.0% | |
GCGCACACCACATCCAGCCT+TGG | + | chr8.1:68865975-68865994 | MS.gene019456:CDS | 65.0% | |
TCCAGTCAGCGGCGAAGCTG+AGG | + | chr8.1:68863993-68864012 | MS.gene019456:CDS | 65.0% | |
TCCTCAGCTTCGCCGCTGAC+TGG | - | chr8.1:68863997-68864016 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 68863977 | 68866463 | 68863977 | ID=MS.gene019456 |
chr8.1 | mRNA | 68863977 | 68866463 | 68863977 | ID=MS.gene019456.t1;Parent=MS.gene019456 |
chr8.1 | exon | 68863977 | 68864118 | 68863977 | ID=MS.gene019456.t1.exon1;Parent=MS.gene019456.t1 |
chr8.1 | CDS | 68863977 | 68864118 | 68863977 | ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1 |
chr8.1 | exon | 68864523 | 68864675 | 68864523 | ID=MS.gene019456.t1.exon2;Parent=MS.gene019456.t1 |
chr8.1 | CDS | 68864523 | 68864675 | 68864523 | ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1 |
chr8.1 | exon | 68864779 | 68865216 | 68864779 | ID=MS.gene019456.t1.exon3;Parent=MS.gene019456.t1 |
chr8.1 | CDS | 68864779 | 68865216 | 68864779 | ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1 |
chr8.1 | exon | 68865307 | 68865380 | 68865307 | ID=MS.gene019456.t1.exon4;Parent=MS.gene019456.t1 |
chr8.1 | CDS | 68865307 | 68865380 | 68865307 | ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1 |
chr8.1 | exon | 68865702 | 68866263 | 68865702 | ID=MS.gene019456.t1.exon5;Parent=MS.gene019456.t1 |
chr8.1 | CDS | 68865702 | 68866263 | 68865702 | ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1 |
chr8.1 | exon | 68866423 | 68866463 | 68866423 | ID=MS.gene019456.t1.exon6;Parent=MS.gene019456.t1 |
chr8.1 | CDS | 68866423 | 68866463 | 68866423 | ID=cds.MS.gene019456.t1;Parent=MS.gene019456.t1 |
Gene Sequence |
Protein sequence |