Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019718.t1 | XP_024634655.1 | 73.4 | 207 | 40 | 1 | 8 | 214 | 1 | 192 | 1.10E-67 | 266.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019718.t1 | Q5JMK6 | 40.9 | 110 | 60 | 1 | 108 | 217 | 137 | 241 | 3.6e-11 | 70.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019718.t1 | A0A1S3E8J2 | 46.0 | 239 | 99 | 4 | 1 | 211 | 17 | 253 | 2.2e-41 | 178.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene019718.t1 | TF | bZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019718.t1 | MTR_3g465280 | 68.000 | 75 | 20 | 3 | 22 | 95 | 9 | 80 | 3.86e-26 | 102 |
MS.gene019718.t1 | MTR_3g465280 | 42.017 | 119 | 59 | 5 | 1 | 117 | 83 | 193 | 9.39e-18 | 80.5 |
MS.gene019718.t1 | MTR_4g079500 | 43.158 | 95 | 54 | 0 | 108 | 202 | 194 | 288 | 2.14e-18 | 82.4 |
MS.gene019718.t1 | MTR_2g090900 | 42.105 | 95 | 55 | 0 | 108 | 202 | 191 | 285 | 2.07e-17 | 80.1 |
MS.gene019718.t1 | MTR_2g090900 | 42.105 | 95 | 55 | 0 | 108 | 202 | 191 | 285 | 2.90e-17 | 79.3 |
MS.gene019718.t1 | MTR_5g075390 | 32.283 | 127 | 78 | 1 | 82 | 200 | 125 | 251 | 1.66e-11 | 63.2 |
MS.gene019718.t1 | MTR_3g467120 | 37.168 | 113 | 66 | 2 | 107 | 219 | 176 | 283 | 2.39e-11 | 62.8 |
MS.gene019718.t1 | MTR_2g099050 | 35.417 | 96 | 62 | 0 | 107 | 202 | 220 | 315 | 6.87e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019718.t1 | AT2G42380 | 40.179 | 112 | 67 | 0 | 91 | 202 | 169 | 280 | 2.07e-19 | 85.5 |
MS.gene019718.t1 | AT3G58120 | 39.823 | 113 | 67 | 1 | 90 | 202 | 185 | 296 | 1.44e-18 | 83.2 |
MS.gene019718.t1 | AT2G42380 | 41.667 | 96 | 56 | 0 | 91 | 186 | 169 | 264 | 6.81e-17 | 77.8 |
MS.gene019718.t1 | AT3G58120 | 41.237 | 97 | 56 | 1 | 90 | 186 | 185 | 280 | 5.36e-16 | 75.5 |
MS.gene019718.t1 | AT2G42380 | 34.821 | 112 | 62 | 1 | 91 | 202 | 169 | 269 | 2.71e-13 | 68.2 |
MS.gene019718.t1 | AT2G31370 | 34.513 | 113 | 74 | 0 | 107 | 219 | 200 | 312 | 3.08e-11 | 62.4 |
MS.gene019718.t1 | AT2G40620 | 37.234 | 94 | 59 | 0 | 107 | 200 | 147 | 240 | 3.12e-11 | 62.4 |
MS.gene019718.t1 | AT1G43700 | 38.298 | 94 | 58 | 0 | 107 | 200 | 193 | 286 | 3.43e-11 | 62.4 |
MS.gene019718.t1 | AT2G21230 | 36.111 | 108 | 64 | 1 | 108 | 215 | 370 | 472 | 4.14e-11 | 62.4 |
MS.gene019718.t1 | AT2G21230 | 36.111 | 108 | 64 | 1 | 108 | 215 | 370 | 472 | 4.14e-11 | 62.4 |
MS.gene019718.t1 | AT2G31370 | 34.513 | 113 | 74 | 0 | 107 | 219 | 200 | 312 | 4.63e-11 | 62.0 |
MS.gene019718.t1 | AT2G31370 | 34.513 | 113 | 74 | 0 | 107 | 219 | 200 | 312 | 4.63e-11 | 62.0 |
MS.gene019718.t1 | AT2G31370 | 34.513 | 113 | 74 | 0 | 107 | 219 | 200 | 312 | 4.63e-11 | 62.0 |
MS.gene019718.t1 | AT2G31370 | 34.513 | 113 | 74 | 0 | 107 | 219 | 200 | 312 | 4.63e-11 | 62.0 |
MS.gene019718.t1 | AT2G31370 | 34.513 | 113 | 74 | 0 | 107 | 219 | 200 | 312 | 4.63e-11 | 62.0 |
MS.gene019718.t1 | AT2G31370 | 34.513 | 113 | 74 | 0 | 107 | 219 | 200 | 312 | 4.63e-11 | 62.0 |
MS.gene019718.t1 | AT5G07160 | 39.785 | 93 | 56 | 0 | 108 | 200 | 48 | 140 | 5.20e-11 | 59.3 |
MS.gene019718.t1 | AT1G06850 | 38.298 | 94 | 58 | 0 | 107 | 200 | 147 | 240 | 5.87e-11 | 61.6 |
MS.gene019718.t1 | AT4G38900 | 36.559 | 93 | 59 | 0 | 108 | 200 | 394 | 486 | 7.01e-11 | 61.6 |
MS.gene019718.t1 | AT4G38900 | 36.559 | 93 | 59 | 0 | 108 | 200 | 394 | 486 | 7.01e-11 | 61.6 |
Find 47 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACAATTTCAAGTCTTAAT+TGG | 0.195639 | 6.2:-28162964 | None:intergenic |
GCTTGATTATATTGCTGATT+TGG | 0.251448 | 6.2:+28162314 | MS.gene019718:CDS |
GCATGACCAAGATTTGATTT+TGG | 0.261059 | 6.2:-28161673 | None:intergenic |
TTTGTACCAGTCATTCTCTT+TGG | 0.270280 | 6.2:-28161460 | None:intergenic |
CTAACCATGTTTGATTTCTT+AGG | 0.274809 | 6.2:-28161511 | None:intergenic |
GTATACCGTTTGAGCCTCTT+TGG | 0.277816 | 6.2:-28161772 | None:intergenic |
TTGTACCAGTCATTCTCTTT+GGG | 0.334410 | 6.2:-28161459 | None:intergenic |
ATAAGAGAGCTGAGGTGAAT+AGG | 0.348904 | 6.2:+28163117 | MS.gene019718:CDS |
GTGCAGAAGTCCTATTTGAT+AGG | 0.379084 | 6.2:-28162272 | None:intergenic |
TCAGCAGTGGTTGTTGACTA+TGG | 0.382450 | 6.2:+28162934 | MS.gene019718:CDS |
TTCTTAGGATCCTATCAAAT+AGG | 0.403266 | 6.2:+28162262 | MS.gene019718:intron |
TTCGATCATGGCAACCCTCT+TGG | 0.403712 | 6.2:+28161563 | MS.gene019718:CDS |
AGTGTACCAAAATCAAATCT+TGG | 0.459311 | 6.2:+28161667 | MS.gene019718:CDS |
CGTCATCAACATTTCGATCA+TGG | 0.470936 | 6.2:+28161551 | MS.gene019718:CDS |
TTGTTGAAGCACAAAATAAG+AGG | 0.503612 | 6.2:+28163165 | MS.gene019718:CDS |
TTTCAAGTCTTAATTGGTGG+TGG | 0.511148 | 6.2:-28162958 | None:intergenic |
TGGATCCAAAGAGGCTCAAA+CGG | 0.511736 | 6.2:+28161767 | MS.gene019718:CDS |
CAATTTCAAGTCTTAATTGG+TGG | 0.518334 | 6.2:-28162961 | None:intergenic |
AAACAAGAGGCGAGTAGCAG+TGG | 0.525757 | 6.2:+28161604 | MS.gene019718:CDS |
GAGCTGAGGTGAATAGGCTG+AGG | 0.526514 | 6.2:+28163123 | MS.gene019718:CDS |
AGACTTCAACTTGTGGGTGA+AGG | 0.531659 | 6.2:-28162904 | None:intergenic |
TATTGCTGATTTGGAGCGGA+AGG | 0.534850 | 6.2:+28162323 | MS.gene019718:CDS |
GGCATCCCAAAGAGAATGAC+TGG | 0.538746 | 6.2:+28161454 | MS.gene019718:CDS |
AACATGTTGCACACAGAAGA+GGG | 0.550817 | 6.2:+28161481 | MS.gene019718:CDS |
TTGCACACAGAAGAGGGACC+TGG | 0.552875 | 6.2:+28161487 | MS.gene019718:CDS |
ATGTTTGATTTCTTAGGCCC+AGG | 0.557475 | 6.2:-28161505 | None:intergenic |
GATTGAGAATAAGAGAGCTG+AGG | 0.559603 | 6.2:+28163109 | MS.gene019718:CDS |
GCATCTGCATGTGTTGGTGT+TGG | 0.564639 | 6.2:+28161724 | MS.gene019718:CDS |
GGTAGTGCATCTGCATGTGT+TGG | 0.568494 | 6.2:+28161718 | MS.gene019718:CDS |
TGCACACAGAAGAGGGACCT+GGG | 0.596481 | 6.2:+28161488 | MS.gene019718:CDS |
ATGGTTAGACCCTTCTCACA+TGG | 0.603263 | 6.2:+28161526 | MS.gene019718:CDS |
AAACATGTTGCACACAGAAG+AGG | 0.606246 | 6.2:+28161480 | MS.gene019718:CDS |
AGCTGAGGTGAATAGGCTGA+GGG | 0.614102 | 6.2:+28163124 | MS.gene019718:CDS |
AAAGAAAGGATACTTCAAGA+AGG | 0.624481 | 6.2:+28162995 | MS.gene019718:CDS |
AGGTCAATGCTCTTCCAAGA+GGG | 0.634364 | 6.2:-28161577 | None:intergenic |
TACTCGCCTCTTGTTTACCG+AGG | 0.637734 | 6.2:-28161597 | None:intergenic |
ATGCACTACCACCACTGATG+TGG | 0.638397 | 6.2:-28161705 | None:intergenic |
CATTGACCTCGGTAAACAAG+AGG | 0.644199 | 6.2:+28161591 | MS.gene019718:CDS |
TGATGACGATCCATGTGAGA+AGG | 0.646387 | 6.2:-28161536 | None:intergenic |
GATGACGATCCATGTGAGAA+GGG | 0.646731 | 6.2:-28161535 | None:intergenic |
GGACTTCTGCACAGAAATCG+AGG | 0.648228 | 6.2:+28162283 | MS.gene019718:CDS |
GCTGAGAAGAACCACATCAG+TGG | 0.651233 | 6.2:+28161694 | MS.gene019718:CDS |
ATTATATTGCTGATTTGGAG+CGG | 0.651960 | 6.2:+28162319 | MS.gene019718:CDS |
GAGAAGAACCACATCAGTGG+TGG | 0.658310 | 6.2:+28161697 | MS.gene019718:CDS |
GAGGTCAATGCTCTTCCAAG+AGG | 0.660030 | 6.2:-28161578 | None:intergenic |
TCTTGGAAGAGCATTGACCT+CGG | 0.690835 | 6.2:+28161580 | MS.gene019718:CDS |
TGGGCCTAAGAAATCAAACA+TGG | 0.705886 | 6.2:+28161507 | MS.gene019718:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTATTTCAATTTCAATT+TGG | - | chr6.2:28162516-28162535 | None:intergenic | 10.0% |
!! | ATTAAAATAAATCTATATGT+TGG | + | chr6.2:28162046-28162065 | MS.gene019718:intron | 10.0% |
!! | TGTTTAAAAATTCATAATTA+GGG | + | chr6.2:28163261-28163280 | MS.gene019718:intron | 10.0% |
!! | TTGTTTAAAAATTCATAATT+AGG | + | chr6.2:28163260-28163279 | MS.gene019718:intron | 10.0% |
!! | AGGAAAAAAAAATCTAATAA+TGG | + | chr6.2:28161938-28161957 | MS.gene019718:intron | 15.0% |
!! | GGAAAAAAAAATCTAATAAT+GGG | + | chr6.2:28161939-28161958 | MS.gene019718:intron | 15.0% |
!! | TATCATACATGATAAAAATA+TGG | + | chr6.2:28163304-28163323 | MS.gene019718:intron | 15.0% |
!!! | GAATTTTTAAACAACAATTT+AGG | - | chr6.2:28163254-28163273 | None:intergenic | 15.0% |
!!! | TTTTGTTTCAATTTTTTCAA+TGG | - | chr6.2:28162171-28162190 | None:intergenic | 15.0% |
!! | AAAATTGAAACAAAATACCT+CGG | + | chr6.2:28162176-28162195 | MS.gene019718:intron | 20.0% |
!! | GTCGATTATTTGTATTAATT+TGG | + | chr6.2:28162616-28162635 | MS.gene019718:intron | 20.0% |
!!! | ATATTATATCGATTATGTGT+AGG | - | chr6.2:28162212-28162231 | None:intergenic | 20.0% |
!!! | ATTAGATTTTTTTTTCCTTC+AGG | - | chr6.2:28161936-28161955 | None:intergenic | 20.0% |
!!! | ATTTTTTTTGTAAAACCTGA+AGG | + | chr6.2:28161918-28161937 | MS.gene019718:intron | 20.0% |
!!! | TGAGATTTTTTAATATATGC+AGG | + | chr6.2:28162868-28162887 | MS.gene019718:intron | 20.0% |
!!! | TTTCAATTTTTTCAATGGTT+TGG | - | chr6.2:28162166-28162185 | None:intergenic | 20.0% |
! | AATGGTATAACTCAACAAAT+TGG | + | chr6.2:28162773-28162792 | MS.gene019718:intron | 25.0% |
! | ACATACTCATGTGAAATAAA+TGG | - | chr6.2:28163075-28163094 | None:intergenic | 25.0% |
! | CAAATCAACTATATTAGTCA+GGG | - | chr6.2:28162121-28162140 | None:intergenic | 25.0% |
! | CATAACACTAAAAGTTTGAT+GGG | + | chr6.2:28161873-28161892 | MS.gene019718:intron | 25.0% |
! | TCAAATCAACTATATTAGTC+AGG | - | chr6.2:28162122-28162141 | None:intergenic | 25.0% |
! | TCACATATCAACTTGTAATT+TGG | + | chr6.2:28162697-28162716 | MS.gene019718:intron | 25.0% |
! | TCATAACACTAAAAGTTTGA+TGG | + | chr6.2:28161872-28161891 | MS.gene019718:intron | 25.0% |
! | TCTTGATCTGATTATTTGAA+TGG | + | chr6.2:28162755-28162774 | MS.gene019718:intron | 25.0% |
! | TTGTTGTAAGAGAAAAAGAA+AGG | + | chr6.2:28162981-28163000 | MS.gene019718:CDS | 25.0% |
!! | CAAATTGAAATTCTTTGAAG+TGG | - | chr6.2:28162597-28162616 | None:intergenic | 25.0% |
!! | CAACAATTTCAAGTCTTAAT+TGG | - | chr6.2:28162967-28162986 | None:intergenic | 25.0% |
!! | TTTTATAGACTTCAACTTGT+GGG | - | chr6.2:28162913-28162932 | None:intergenic | 25.0% |
!! | TTTTTATAGACTTCAACTTG+TGG | - | chr6.2:28162914-28162933 | None:intergenic | 25.0% |
!!! | AAATTCTTTGAAGTGGTAAT+CGG | - | chr6.2:28162590-28162609 | None:intergenic | 25.0% |
!!! | ATGAGTATGTTTATTTTCAG+TGG | + | chr6.2:28163085-28163104 | MS.gene019718:intron | 25.0% |
!!! | TTATTAGTTTTCTTGTCTTG+TGG | - | chr6.2:28161643-28161662 | None:intergenic | 25.0% |
AAAGAAAGGATACTTCAAGA+AGG | + | chr6.2:28162995-28163014 | MS.gene019718:CDS | 30.0% | |
AAGTCTATAAAAATCAGCAG+TGG | + | chr6.2:28162921-28162940 | MS.gene019718:CDS | 30.0% | |
AGTGTACCAAAATCAAATCT+TGG | + | chr6.2:28161667-28161686 | MS.gene019718:CDS | 30.0% | |
AGTTTGATGGGAATAGTATT+TGG | + | chr6.2:28161885-28161904 | MS.gene019718:intron | 30.0% | |
ATAGATCGATTACGATTGAA+TGG | - | chr6.2:28162677-28162696 | None:intergenic | 30.0% | |
ATGATAAAAAGTGAGAGAAC+AGG | + | chr6.2:28163373-28163392 | MS.gene019718:intron | 30.0% | |
GATTCTCATCTAAAGATCAT+AGG | - | chr6.2:28162470-28162489 | None:intergenic | 30.0% | |
TAATGGGAGTTGTTCTATTT+AGG | + | chr6.2:28161955-28161974 | MS.gene019718:intron | 30.0% | |
TGAGCAACACAAAAATTAGT+TGG | + | chr6.2:28161816-28161835 | MS.gene019718:intron | 30.0% | |
TGATAAAAAGTGAGAGAACA+GGG | + | chr6.2:28163374-28163393 | MS.gene019718:intron | 30.0% | |
TTAGTTGGCAAGTCAAAAAA+TGG | + | chr6.2:28161831-28161850 | MS.gene019718:intron | 30.0% | |
TTCTTAGGATCCTATCAAAT+AGG | + | chr6.2:28162262-28162281 | MS.gene019718:intron | 30.0% | |
TTGTTGAAGCACAAAATAAG+AGG | + | chr6.2:28163165-28163184 | MS.gene019718:CDS | 30.0% | |
! | CAATTTCAAGTCTTAATTGG+TGG | - | chr6.2:28162964-28162983 | None:intergenic | 30.0% |
! | CTAACCATGTTTGATTTCTT+AGG | - | chr6.2:28161514-28161533 | None:intergenic | 30.0% |
! | GCTTGATTATATTGCTGATT+TGG | + | chr6.2:28162314-28162333 | MS.gene019718:CDS | 30.0% |
! | TCTCTTCACAAGTTTTTGTT+TGG | - | chr6.2:28162842-28162861 | None:intergenic | 30.0% |
! | TGTTCTATTTAGGTTTGTCA+TGG | + | chr6.2:28161965-28161984 | MS.gene019718:intron | 30.0% |
!! | AGTTTTTGTTTGGGTAGATA+TGG | - | chr6.2:28162832-28162851 | None:intergenic | 30.0% |
!! | ATTATATTGCTGATTTGGAG+CGG | + | chr6.2:28162319-28162338 | MS.gene019718:CDS | 30.0% |
!! | CTCTTCACAAGTTTTTGTTT+GGG | - | chr6.2:28162841-28162860 | None:intergenic | 30.0% |
GAAACTACAGACAAACACAA+AGG | - | chr6.2:28163334-28163353 | None:intergenic | 35.0% | |
TGATAGGATCCTAAGAACAA+CGG | - | chr6.2:28162259-28162278 | None:intergenic | 35.0% | |
TGATCAAGCAACACAAAAAC+TGG | + | chr6.2:28161747-28161766 | MS.gene019718:CDS | 35.0% | |
TGGTTCATCCTAAACAACAA+GGG | + | chr6.2:28162793-28162812 | MS.gene019718:intron | 35.0% | |
TTGGTTCATCCTAAACAACA+AGG | + | chr6.2:28162792-28162811 | MS.gene019718:intron | 35.0% | |
TTGTACCAGTCATTCTCTTT+GGG | - | chr6.2:28161462-28161481 | None:intergenic | 35.0% | |
TTTGTACCAGTCATTCTCTT+TGG | - | chr6.2:28161463-28161482 | None:intergenic | 35.0% | |
TTTGTTTGGGTAGATATGGT+GGG | - | chr6.2:28162828-28162847 | None:intergenic | 35.0% | |
! | TTTCAAGTCTTAATTGGTGG+TGG | - | chr6.2:28162961-28162980 | None:intergenic | 35.0% |
! | TTTTGTCTTCCGTTGTTCTT+AGG | + | chr6.2:28162247-28162266 | MS.gene019718:intron | 35.0% |
!! | ATATGGATCCCTTGTTGTTT+AGG | - | chr6.2:28162804-28162823 | None:intergenic | 35.0% |
!! | GCATGACCAAGATTTGATTT+TGG | - | chr6.2:28161676-28161695 | None:intergenic | 35.0% |
!! | TTTTGTTTGGGTAGATATGG+TGG | - | chr6.2:28162829-28162848 | None:intergenic | 35.0% |
AAACATGTTGCACACAGAAG+AGG | + | chr6.2:28161480-28161499 | MS.gene019718:CDS | 40.0% | |
AACATGTTGCACACAGAAGA+GGG | + | chr6.2:28161481-28161500 | MS.gene019718:CDS | 40.0% | |
ATAAGAGAGCTGAGGTGAAT+AGG | + | chr6.2:28163117-28163136 | MS.gene019718:CDS | 40.0% | |
CACAAAAACTGGATCCAAAG+AGG | + | chr6.2:28161758-28161777 | MS.gene019718:CDS | 40.0% | |
CGTCATCAACATTTCGATCA+TGG | + | chr6.2:28161551-28161570 | MS.gene019718:CDS | 40.0% | |
GATTGAGAATAAGAGAGCTG+AGG | + | chr6.2:28163109-28163128 | MS.gene019718:CDS | 40.0% | |
GCGGAAGGAAAAATATTTGC+AGG | + | chr6.2:28162338-28162357 | MS.gene019718:CDS | 40.0% | |
GTGCAGAAGTCCTATTTGAT+AGG | - | chr6.2:28162275-28162294 | None:intergenic | 40.0% | |
GTGTAGGAAATAAACAACCG+AGG | - | chr6.2:28162196-28162215 | None:intergenic | 40.0% | |
TGGGCCTAAGAAATCAAACA+TGG | + | chr6.2:28161507-28161526 | MS.gene019718:CDS | 40.0% | |
! | ATGTTTGATTTCTTAGGCCC+AGG | - | chr6.2:28161508-28161527 | None:intergenic | 40.0% |
! | CTATTGCTCTAGATGTAGAG+CGG | + | chr6.2:28162564-28162583 | MS.gene019718:intron | 40.0% |
AACTAGATTATCCCCGATCG+TGG | + | chr6.2:28162441-28162460 | MS.gene019718:intron | 45.0% | |
AGACTTCAACTTGTGGGTGA+AGG | - | chr6.2:28162907-28162926 | None:intergenic | 45.0% | |
AGATCATAGGCTTCCACGAT+CGG | - | chr6.2:28162457-28162476 | None:intergenic | 45.0% | |
AGGTCAATGCTCTTCCAAGA+GGG | - | chr6.2:28161580-28161599 | None:intergenic | 45.0% | |
ATGGTTAGACCCTTCTCACA+TGG | + | chr6.2:28161526-28161545 | MS.gene019718:CDS | 45.0% | |
CATTGACCTCGGTAAACAAG+AGG | + | chr6.2:28161591-28161610 | MS.gene019718:CDS | 45.0% | |
GATGACGATCCATGTGAGAA+GGG | - | chr6.2:28161538-28161557 | None:intergenic | 45.0% | |
GTATACCGTTTGAGCCTCTT+TGG | - | chr6.2:28161775-28161794 | None:intergenic | 45.0% | |
TGGATCCAAAGAGGCTCAAA+CGG | + | chr6.2:28161767-28161786 | MS.gene019718:CDS | 45.0% | |
! | GGGTAGATATGGTGGGAATA+TGG | - | chr6.2:28162821-28162840 | None:intergenic | 45.0% |
! | TCAGCAGTGGTTGTTGACTA+TGG | + | chr6.2:28162934-28162953 | MS.gene019718:CDS | 45.0% |
! | TGATGACGATCCATGTGAGA+AGG | - | chr6.2:28161539-28161558 | None:intergenic | 45.0% |
!! | TATTGCTGATTTGGAGCGGA+AGG | + | chr6.2:28162323-28162342 | MS.gene019718:CDS | 45.0% |
!! | TCTTGGAAGAGCATTGACCT+CGG | + | chr6.2:28161580-28161599 | MS.gene019718:CDS | 45.0% |
AAACAAGAGGCGAGTAGCAG+TGG | + | chr6.2:28161604-28161623 | MS.gene019718:CDS | 50.0% | |
AGCTGAGGTGAATAGGCTGA+GGG | + | chr6.2:28163124-28163143 | MS.gene019718:CDS | 50.0% | |
ATCATAGGCTTCCACGATCG+GGG | - | chr6.2:28162455-28162474 | None:intergenic | 50.0% | |
ATGCACTACCACCACTGATG+TGG | - | chr6.2:28161708-28161727 | None:intergenic | 50.0% | |
GAGAAGAACCACATCAGTGG+TGG | + | chr6.2:28161697-28161716 | MS.gene019718:CDS | 50.0% | |
GAGGTCAATGCTCTTCCAAG+AGG | - | chr6.2:28161581-28161600 | None:intergenic | 50.0% | |
GATCATAGGCTTCCACGATC+GGG | - | chr6.2:28162456-28162475 | None:intergenic | 50.0% | |
GCTGAGAAGAACCACATCAG+TGG | + | chr6.2:28161694-28161713 | MS.gene019718:CDS | 50.0% | |
GGACTTCTGCACAGAAATCG+AGG | + | chr6.2:28162283-28162302 | MS.gene019718:CDS | 50.0% | |
GGCATCCCAAAGAGAATGAC+TGG | + | chr6.2:28161454-28161473 | MS.gene019718:CDS | 50.0% | |
GGTAGTGCATCTGCATGTGT+TGG | + | chr6.2:28161718-28161737 | MS.gene019718:CDS | 50.0% | |
TTCGATCATGGCAACCCTCT+TGG | + | chr6.2:28161563-28161582 | MS.gene019718:CDS | 50.0% | |
! | GCATCTGCATGTGTTGGTGT+TGG | + | chr6.2:28161724-28161743 | MS.gene019718:CDS | 50.0% |
! | TACTCGCCTCTTGTTTACCG+AGG | - | chr6.2:28161600-28161619 | None:intergenic | 50.0% |
GAGCTGAGGTGAATAGGCTG+AGG | + | chr6.2:28163123-28163142 | MS.gene019718:CDS | 55.0% | |
TGCACACAGAAGAGGGACCT+GGG | + | chr6.2:28161488-28161507 | MS.gene019718:CDS | 55.0% | |
TTGCACACAGAAGAGGGACC+TGG | + | chr6.2:28161487-28161506 | MS.gene019718:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 28161448 | 28163427 | 28161448 | ID=MS.gene019718 |
chr6.2 | mRNA | 28161448 | 28163427 | 28161448 | ID=MS.gene019718.t1;Parent=MS.gene019718 |
chr6.2 | exon | 28161448 | 28161788 | 28161448 | ID=MS.gene019718.t1.exon1;Parent=MS.gene019718.t1 |
chr6.2 | CDS | 28161448 | 28161788 | 28161448 | ID=cds.MS.gene019718.t1;Parent=MS.gene019718.t1 |
chr6.2 | exon | 28162269 | 28162359 | 28162269 | ID=MS.gene019718.t1.exon2;Parent=MS.gene019718.t1 |
chr6.2 | CDS | 28162269 | 28162359 | 28162269 | ID=cds.MS.gene019718.t1;Parent=MS.gene019718.t1 |
chr6.2 | exon | 28162890 | 28163016 | 28162890 | ID=MS.gene019718.t1.exon3;Parent=MS.gene019718.t1 |
chr6.2 | CDS | 28162890 | 28163016 | 28162890 | ID=cds.MS.gene019718.t1;Parent=MS.gene019718.t1 |
chr6.2 | exon | 28163105 | 28163186 | 28163105 | ID=MS.gene019718.t1.exon4;Parent=MS.gene019718.t1 |
chr6.2 | CDS | 28163105 | 28163186 | 28163105 | ID=cds.MS.gene019718.t1;Parent=MS.gene019718.t1 |
chr6.2 | exon | 28163388 | 28163427 | 28163388 | ID=MS.gene019718.t1.exon5;Parent=MS.gene019718.t1 |
chr6.2 | CDS | 28163388 | 28163427 | 28163388 | ID=cds.MS.gene019718.t1;Parent=MS.gene019718.t1 |
Gene Sequence |
Protein sequence |