AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019789

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019789.t1 MTR_6g035315 96.253 427 16 0 25 451 22 448 0.0 749
MS.gene019789.t1 MTR_1g098920 71.329 429 110 6 24 445 23 445 0.0 590
MS.gene019789.t1 MTR_2g098080 42.169 415 208 6 37 444 22 411 8.67e-92 285
MS.gene019789.t1 MTR_7g103390 49.590 244 102 6 11 248 1 229 1.59e-65 217
MS.gene019789.t1 MTR_1g061640 62.420 157 56 3 93 248 95 249 5.32e-58 199
MS.gene019789.t1 MTR_1g061640 49.333 75 38 0 371 445 406 480 5.13e-18 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019789.t1 AT1G21200 61.926 457 146 10 1 446 1 440 5.29e-179 508
MS.gene019789.t1 AT1G21200 61.926 457 146 10 1 446 1 440 5.29e-179 508
MS.gene019789.t1 AT1G76870 52.273 440 142 16 17 447 3 383 1.71e-126 372
MS.gene019789.t1 AT1G76870 52.273 440 142 16 17 447 3 383 1.71e-126 372
MS.gene019789.t1 AT1G76870 52.273 440 142 16 17 447 3 383 1.71e-126 372
MS.gene019789.t1 AT3G10040 44.622 251 109 8 21 252 7 246 4.09e-46 165

Find 113 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGCAGTGTTGCAGAAAA+AGG 0.201562 6.2:+26134372 MS.gene019789:CDS
AGAAGGAAGTAGAGGGAAAA+AGG 0.214962 6.2:+26134234 MS.gene019789:CDS
AATGCAATCTATTACAATTA+TGG 0.268261 6.2:-26134651 None:intergenic
CATGAAGATGCTACTACTTT+TGG 0.268448 6.2:+26134907 MS.gene019789:CDS
GGTGATAGTCGAGGAATCTT+TGG 0.290899 6.2:+26134841 MS.gene019789:CDS
AATTCAACGATCTTAATAAA+AGG 0.306147 6.2:+26134467 MS.gene019789:CDS
ATAACGGCGGTGTCTTATAT+TGG 0.308369 6.2:+26134307 MS.gene019789:CDS
TATCATGATCATCTCTATTT+CGG 0.312915 6.2:-26134717 None:intergenic
ATCTTAATAAAAGGTATAAA+AGG 0.318059 6.2:+26134476 MS.gene019789:CDS
TGGAAATTCTTTAAATTGTC+AGG 0.326876 6.2:+26134927 MS.gene019789:CDS
GAAATCTATTTCCAAGGTTA+TGG 0.330531 6.2:+26134402 MS.gene019789:CDS
CAAAAGTAGTAGCATCTTCA+TGG 0.344743 6.2:-26134906 None:intergenic
GTGATAGTCGAGGAATCTTT+GGG 0.360170 6.2:+26134842 MS.gene019789:CDS
TGACGAGGATGATCATGATA+TGG 0.392416 6.2:+26134774 MS.gene019789:CDS
TTCCAAGGTTATGGCTGAAA+GGG 0.411155 6.2:+26134411 MS.gene019789:CDS
CGGCGGCACCAGCTTTAACT+AGG 0.419109 6.2:+26135248 MS.gene019789:CDS
GTCGATGAACGAGTTTAGTC+AGG 0.421399 6.2:+26134144 MS.gene019789:CDS
TTCAACGTCCCTATTGTAAG+AGG 0.429215 6.2:-26134103 None:intergenic
CAAGGTGATGGTGGTGGTGG+TGG 0.436461 6.2:+26133947 MS.gene019789:CDS
AGATGGAAATCAAGCTTTAC+CGG 0.441260 6.2:+26134993 MS.gene019789:CDS
GTTCAAGGTGATGGTGGTGG+TGG 0.446247 6.2:+26133944 MS.gene019789:CDS
TGCAAGGACCGCTGCAATGC+AGG 0.447004 6.2:-26134685 None:intergenic
TGTTGAAAATCCAGCTTTGT+TGG 0.449587 6.2:+26134537 MS.gene019789:CDS
GTGCTTTCTTCGATTAATGA+AGG 0.476946 6.2:+26134076 MS.gene019789:CDS
TAGTAGCATCTTCATGGCCT+TGG 0.479201 6.2:-26134900 None:intergenic
GGTAAAGCTTGATTTCCATC+TGG 0.481200 6.2:-26134991 None:intergenic
AACTCATCCGTGTCAAGGGC+CGG 0.484357 6.2:+26134051 MS.gene019789:CDS
ACAGATTCAGATTGAGATGA+TGG 0.485981 6.2:+26135089 MS.gene019789:CDS
TCTCAAGGAGGTATAGTTCA+AGG 0.489422 6.2:+26133929 MS.gene019789:CDS
GGGAGTTCTGAAGGTGGTAG+TGG 0.493151 6.2:+26134337 MS.gene019789:CDS
CACCTTGGCAGCGTGTGAAG+TGG 0.502557 6.2:+26134260 MS.gene019789:CDS
CAGCTTGGTTACAGAAGCAA+TGG 0.506444 6.2:+26135028 MS.gene019789:CDS
AAAAGGCTTAACGATATGCT+TGG 0.506945 6.2:+26134493 MS.gene019789:CDS
CGATGAACTCGCATCGATCC+CGG 0.508975 6.2:-26133992 None:intergenic
CGCTGCAATGCAGGATCATG+CGG 0.517016 6.2:-26134676 None:intergenic
GTGTCTTATATTGGCGAGGA+CGG 0.520156 6.2:+26134316 MS.gene019789:CDS
ACCCCTTTCAGCCATAACCT+TGG 0.524702 6.2:-26134413 None:intergenic
TTTCCAAGGTTATGGCTGAA+AGG 0.525735 6.2:+26134410 MS.gene019789:CDS
CTGAAGGTGGTAGTGGTGGA+AGG 0.527560 6.2:+26134344 MS.gene019789:CDS
TCGATTACATCCAACAAAGC+TGG 0.531195 6.2:-26134547 None:intergenic
CATAAAAGTTCGTATCCTCA+TGG 0.535597 6.2:+26134955 MS.gene019789:CDS
CTCGTCATGATCATCATGAT+AGG 0.537593 6.2:-26134758 None:intergenic
GAGGAAGATGAGCCGGAGGA+AGG 0.539815 6.2:+26134193 MS.gene019789:CDS
AGCTTGGTTACAGAAGCAAT+GGG 0.542768 6.2:+26135029 MS.gene019789:CDS
GAGCCGGAGGAAGGTGGTGA+TGG 0.542968 6.2:+26134202 MS.gene019789:CDS
GTATCTTAACGAGAAAGAAA+AGG 0.544487 6.2:+26134570 MS.gene019789:CDS
GTTGTTGAGAAGAAATGGAA+GGG 0.545146 6.2:+26133900 None:intergenic
GGCTTAACGATATGCTTGGA+AGG 0.546544 6.2:+26134497 MS.gene019789:CDS
TGTTGTTGAGAAGAAATGGA+AGG 0.552087 6.2:+26133899 None:intergenic
GAACTGAAGCGAAAGGAGAT+CGG 0.553087 6.2:+26135228 MS.gene019789:CDS
CATCAAACTCATCCGTGTCA+AGG 0.557158 6.2:+26134046 MS.gene019789:CDS
TGTCTTATATTGGCGAGGAC+GGG 0.557593 6.2:+26134317 MS.gene019789:CDS
GGGGAGTGAGGAAGATGAGC+CGG 0.557735 6.2:+26134186 MS.gene019789:CDS
CGGAAAACATGAAAGCAGCT+TGG 0.558783 6.2:+26135013 MS.gene019789:CDS
ATCAAACTCATCCGTGTCAA+GGG 0.560403 6.2:+26134047 MS.gene019789:CDS
GACACGGATGAGTTTGATGT+TGG 0.561258 6.2:-26134042 None:intergenic
GGCGAGGACGGGAGTTCTGA+AGG 0.563055 6.2:+26134328 MS.gene019789:CDS
ATAGTTCAAGGTGATGGTGG+TGG 0.564193 6.2:+26133941 MS.gene019789:CDS
AGAGTTGGAGAAGTTCAAGC+TGG 0.565535 6.2:+26135164 MS.gene019789:CDS
TGATGTTGGTTCATCGTATG+CGG 0.567222 6.2:-26134028 None:intergenic
GGATGATCATGATATGGAAA+CGG 0.567609 6.2:+26134780 MS.gene019789:CDS
TAAGTGGAAATCTATTTCCA+AGG 0.570877 6.2:+26134396 MS.gene019789:CDS
GCTTGAACTTCTCCAACTCT+CGG 0.574294 6.2:-26135161 None:intergenic
GGTATAGTTCAAGGTGATGG+TGG 0.576507 6.2:+26133938 MS.gene019789:CDS
AGCACCGCCGGCCCTTGACA+CGG 0.577678 6.2:-26134058 None:intergenic
GCTTAACGATATGCTTGGAA+GGG 0.580590 6.2:+26134498 MS.gene019789:CDS
GGAGGTATAGTTCAAGGTGA+TGG 0.582990 6.2:+26133935 MS.gene019789:CDS
TGCTTTAGAACTGAAGCGAA+AGG 0.583633 6.2:+26135221 MS.gene019789:CDS
CGCATGATCCTGCATTGCAG+CGG 0.584928 6.2:+26134677 MS.gene019789:CDS
AAACAAACACTCGGGGAGTG+AGG 0.585505 6.2:+26134174 MS.gene019789:CDS
TTAGCAAACCTAGTTAAAGC+TGG 0.588173 6.2:-26135256 None:intergenic
GTCCACTTCACACGCTGCCA+AGG 0.588756 6.2:-26134262 None:intergenic
TGACCATCACCACCTTCCTC+CGG 0.589498 6.2:-26134205 None:intergenic
TTCGTATCCTCATGGACAGA+TGG 0.597348 6.2:+26134963 MS.gene019789:CDS
TCCAAGGTTATGGCTGAAAG+GGG 0.597943 6.2:+26134412 MS.gene019789:CDS
GGAGATAGAAACAAACACTC+GGG 0.601048 6.2:+26134166 MS.gene019789:CDS
CTTAACGATATGCTTGGAAG+GGG 0.602105 6.2:+26134499 MS.gene019789:CDS
GAGTGAGGAAGATGAGCCGG+AGG 0.604600 6.2:+26134189 MS.gene019789:CDS
GGACAGATGGTACAACCAGA+TGG 0.605592 6.2:+26134976 MS.gene019789:CDS
CATCATCAAGAAGGAAGTAG+AGG 0.606503 6.2:+26134226 MS.gene019789:CDS
AGTTCTGAAGGTGGTAGTGG+TGG 0.609983 6.2:+26134340 MS.gene019789:CDS
TCGATGCGAGTTCATCGTCA+AGG 0.616549 6.2:+26133998 MS.gene019789:CDS
AATTTATCCTCACATTGCTG+AGG 0.616974 6.2:-26134448 None:intergenic
GAAGATGAGCCGGAGGAAGG+TGG 0.617091 6.2:+26134196 MS.gene019789:CDS
GGTGATGGTCATCATCAAGA+AGG 0.617927 6.2:+26134217 MS.gene019789:CDS
ATTTCGGAGAGCTATTTGCA+AGG 0.617973 6.2:-26134701 None:intergenic
GAAGAGAACTACGCTTCCCA+TGG 0.620396 6.2:+26134820 MS.gene019789:CDS
TGTGAAGTGGACTGATAAGA+TGG 0.627029 6.2:+26134273 MS.gene019789:CDS
ATGATAACGATGATGTGAGA+AGG 0.627318 6.2:+26134734 MS.gene019789:CDS
ATCATCAAGAAGGAAGTAGA+GGG 0.627850 6.2:+26134227 MS.gene019789:CDS
GGGAGATAGAAACAAACACT+CGG 0.632973 6.2:+26134165 MS.gene019789:CDS
CGATGCGAGTTCATCGTCAA+GGG 0.633456 6.2:+26133999 MS.gene019789:CDS
TTAATCGAAGAAAGCACCGC+CGG 0.638253 6.2:-26134070 None:intergenic
ATGGAAGGGAATTTGTCTCA+AGG 0.640788 6.2:+26133914 MS.gene019789:CDS
GCTTCCCATGGTGATAGTCG+AGG 0.642635 6.2:+26134832 MS.gene019789:CDS
GATAGTCGAGGAATCTTTGG+GGG 0.644442 6.2:+26134844 MS.gene019789:CDS
GCAATGGGTTGAATCTCGCT+CGG 0.646017 6.2:+26135044 MS.gene019789:CDS
TCGATGAACGAGTTTAGTCA+GGG 0.648981 6.2:+26134145 MS.gene019789:CDS
TCATCCGTGTCAAGGGCCGG+CGG 0.649182 6.2:+26134054 MS.gene019789:CDS
GGCGGTGTCTTATATTGGCG+AGG 0.657443 6.2:+26134312 MS.gene019789:CDS
GATTCCTCGACTATCACCAT+GGG 0.658101 6.2:-26134836 None:intergenic
CTATCATGATGATCATGACG+AGG 0.661777 6.2:+26134759 MS.gene019789:CDS
AGATTCCTCGACTATCACCA+TGG 0.673633 6.2:-26134837 None:intergenic
GGTTGTACCATCTGTCCATG+AGG 0.678583 6.2:-26134970 None:intergenic
AAAAGACTAAGACAAGGCCA+AGG 0.689910 6.2:+26134883 MS.gene019789:CDS
TGATAGTCGAGGAATCTTTG+GGG 0.690169 6.2:+26134843 MS.gene019789:CDS
CTGAAGCGAAAGGAGATCGG+CGG 0.699525 6.2:+26135231 MS.gene019789:CDS
TGTTTCGCCTCAGCAATGTG+AGG 0.699798 6.2:+26134441 MS.gene019789:CDS
GAAGGGAATTTGTCTCAAGG+AGG 0.706788 6.2:+26133917 MS.gene019789:CDS
GAGATAGAAACAAACACTCG+GGG 0.708162 6.2:+26134167 MS.gene019789:CDS
GAGGACGGGAGTTCTGAAGG+TGG 0.721621 6.2:+26134331 MS.gene019789:CDS
AGTGGACTGATAAGATGGTG+AGG 0.726752 6.2:+26134278 MS.gene019789:CDS
ACTACGAAAAGACTAAGACA+AGG 0.735602 6.2:+26134877 MS.gene019789:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTAATAAAAGGTATAAA+AGG + chr6.2:26134476-26134495 MS.gene019789:CDS 15.0%
!! AATGCAATCTATTACAATTA+TGG - chr6.2:26134654-26134673 None:intergenic 20.0%
!! AATTCAACGATCTTAATAAA+AGG + chr6.2:26134467-26134486 MS.gene019789:CDS 20.0%
!! AGAGAAACAAAAATTCAAAT+GGG + chr6.2:26135116-26135135 MS.gene019789:CDS 20.0%
!! TAGAGAAACAAAAATTCAAA+TGG + chr6.2:26135115-26135134 MS.gene019789:CDS 20.0%
! TATCATGATCATCTCTATTT+CGG - chr6.2:26134720-26134739 None:intergenic 25.0%
! TGGAAATTCTTTAAATTGTC+AGG + chr6.2:26134927-26134946 MS.gene019789:CDS 25.0%
AACAAAAATTCAAATGGGAG+AGG + chr6.2:26135121-26135140 MS.gene019789:CDS 30.0%
GAAATCTATTTCCAAGGTTA+TGG + chr6.2:26134402-26134421 MS.gene019789:CDS 30.0%
GTATCTTAACGAGAAAGAAA+AGG + chr6.2:26134570-26134589 MS.gene019789:CDS 30.0%
TAAGTGGAAATCTATTTCCA+AGG + chr6.2:26134396-26134415 MS.gene019789:CDS 30.0%
! AAGGTTTTCCTCTTACAATA+GGG + chr6.2:26134095-26134114 MS.gene019789:CDS 30.0%
AAAAGGCTTAACGATATGCT+TGG + chr6.2:26134493-26134512 MS.gene019789:CDS 35.0%
AATTTATCCTCACATTGCTG+AGG - chr6.2:26134451-26134470 None:intergenic 35.0%
ACAGATTCAGATTGAGATGA+TGG + chr6.2:26135089-26135108 MS.gene019789:CDS 35.0%
ACTACGAAAAGACTAAGACA+AGG + chr6.2:26134877-26134896 MS.gene019789:CDS 35.0%
AGATGGAAATCAAGCTTTAC+CGG + chr6.2:26134993-26135012 MS.gene019789:CDS 35.0%
ATCATCAAGAAGGAAGTAGA+GGG + chr6.2:26134227-26134246 MS.gene019789:CDS 35.0%
ATTTGCAGTGTTGCAGAAAA+AGG + chr6.2:26134372-26134391 MS.gene019789:CDS 35.0%
CAAAAGTAGTAGCATCTTCA+TGG - chr6.2:26134909-26134928 None:intergenic 35.0%
CATAAAAGTTCGTATCCTCA+TGG + chr6.2:26134955-26134974 MS.gene019789:CDS 35.0%
GGATGATCATGATATGGAAA+CGG + chr6.2:26134780-26134799 MS.gene019789:CDS 35.0%
GTGCTTTCTTCGATTAATGA+AGG + chr6.2:26134076-26134095 MS.gene019789:CDS 35.0%
TTTGCAGTGTTGCAGAAAAA+GGG + chr6.2:26134373-26134392 MS.gene019789:CDS 35.0%
! ATGATAACGATGATGTGAGA+AGG + chr6.2:26134734-26134753 MS.gene019789:CDS 35.0%
! CATGAAGATGCTACTACTTT+TGG + chr6.2:26134907-26134926 MS.gene019789:CDS 35.0%
! CATGAGGATACGAACTTTTA+TGG - chr6.2:26134957-26134976 None:intergenic 35.0%
! GAAGGTTTTCCTCTTACAAT+AGG + chr6.2:26134094-26134113 MS.gene019789:CDS 35.0%
! TGGATTTTCAACAACTTGAC+AGG - chr6.2:26134530-26134549 None:intergenic 35.0%
! TGTTGAAAATCCAGCTTTGT+TGG + chr6.2:26134537-26134556 MS.gene019789:CDS 35.0%
!!! TTTTGGTGGTTTTGATTTGC+CGG + chr6.2:26133973-26133992 MS.gene019789:CDS 35.0%
AAAAGACTAAGACAAGGCCA+AGG + chr6.2:26134883-26134902 MS.gene019789:CDS 40.0%
AAGGAAGTAGAGGGAAAAAG+GGG + chr6.2:26134236-26134255 MS.gene019789:CDS 40.0%
AGAAGGAAGTAGAGGGAAAA+AGG + chr6.2:26134234-26134253 MS.gene019789:CDS 40.0%
AGCTTGGTTACAGAAGCAAT+GGG + chr6.2:26135029-26135048 MS.gene019789:CDS 40.0%
ATAACGGCGGTGTCTTATAT+TGG + chr6.2:26134307-26134326 MS.gene019789:CDS 40.0%
ATCAAACTCATCCGTGTCAA+GGG + chr6.2:26134047-26134066 MS.gene019789:CDS 40.0%
ATGGAAGGGAATTTGTCTCA+AGG + chr6.2:26133914-26133933 MS.gene019789:CDS 40.0%
ATTTCGGAGAGCTATTTGCA+AGG - chr6.2:26134704-26134723 None:intergenic 40.0%
CAAGAAAAAAGACCGAGAGT+TGG + chr6.2:26135149-26135168 MS.gene019789:CDS 40.0%
CATCATCAAGAAGGAAGTAG+AGG + chr6.2:26134226-26134245 MS.gene019789:CDS 40.0%
CTATCATGATGATCATGACG+AGG + chr6.2:26134759-26134778 MS.gene019789:CDS 40.0%
CTCGTCATGATCATCATGAT+AGG - chr6.2:26134761-26134780 None:intergenic 40.0%
CTTAACGATATGCTTGGAAG+GGG + chr6.2:26134499-26134518 MS.gene019789:CDS 40.0%
GAAGGAAGTAGAGGGAAAAA+GGG + chr6.2:26134235-26134254 MS.gene019789:CDS 40.0%
GAGATAGAAACAAACACTCG+GGG + chr6.2:26134167-26134186 MS.gene019789:CDS 40.0%
GCTTAACGATATGCTTGGAA+GGG + chr6.2:26134498-26134517 MS.gene019789:CDS 40.0%
GGAGATAGAAACAAACACTC+GGG + chr6.2:26134166-26134185 MS.gene019789:CDS 40.0%
GGGAGATAGAAACAAACACT+CGG + chr6.2:26134165-26134184 MS.gene019789:CDS 40.0%
GGTAAAGCTTGATTTCCATC+TGG - chr6.2:26134994-26135013 None:intergenic 40.0%
GTGATAGTCGAGGAATCTTT+GGG + chr6.2:26134842-26134861 MS.gene019789:CDS 40.0%
TCGATGAACGAGTTTAGTCA+GGG + chr6.2:26134145-26134164 MS.gene019789:CDS 40.0%
TCGATTACATCCAACAAAGC+TGG - chr6.2:26134550-26134569 None:intergenic 40.0%
TGACGAGGATGATCATGATA+TGG + chr6.2:26134774-26134793 MS.gene019789:CDS 40.0%
TGATAGTCGAGGAATCTTTG+GGG + chr6.2:26134843-26134862 MS.gene019789:CDS 40.0%
TGTTGCAGAAAAAGGGTAAG+TGG + chr6.2:26134380-26134399 MS.gene019789:CDS 40.0%
TTCAACGTCCCTATTGTAAG+AGG - chr6.2:26134106-26134125 None:intergenic 40.0%
TTCCAAGGTTATGGCTGAAA+GGG + chr6.2:26134411-26134430 MS.gene019789:CDS 40.0%
TTTCCAAGGTTATGGCTGAA+AGG + chr6.2:26134410-26134429 MS.gene019789:CDS 40.0%
! GATGGTGAGGCTTTTGATAA+CGG + chr6.2:26134291-26134310 MS.gene019789:CDS 40.0%
! TCTCAAGGAGGTATAGTTCA+AGG + chr6.2:26133929-26133948 MS.gene019789:CDS 40.0%
!! CAAGCTGCTTTCATGTTTTC+CGG - chr6.2:26135015-26135034 None:intergenic 40.0%
!! TGATGTTGGTTCATCGTATG+CGG - chr6.2:26134031-26134050 None:intergenic 40.0%
!! TGCTTTAGAACTGAAGCGAA+AGG + chr6.2:26135221-26135240 MS.gene019789:CDS 40.0%
!! TGTGAAGTGGACTGATAAGA+TGG + chr6.2:26134273-26134292 MS.gene019789:CDS 40.0%
!!! TTTGGTGGTTTTGATTTGCC+GGG + chr6.2:26133974-26133993 MS.gene019789:CDS 40.0%
AGAGTTGGAGAAGTTCAAGC+TGG + chr6.2:26135164-26135183 MS.gene019789:CDS 45.0%
AGATTCCTCGACTATCACCA+TGG - chr6.2:26134840-26134859 None:intergenic 45.0%
CAGCTTGGTTACAGAAGCAA+TGG + chr6.2:26135028-26135047 MS.gene019789:CDS 45.0%
CATCAAACTCATCCGTGTCA+AGG + chr6.2:26134046-26134065 MS.gene019789:CDS 45.0%
CGGAAAACATGAAAGCAGCT+TGG + chr6.2:26135013-26135032 MS.gene019789:CDS 45.0%
GAACTGAAGCGAAAGGAGAT+CGG + chr6.2:26135228-26135247 MS.gene019789:CDS 45.0%
GAAGGGAATTTGTCTCAAGG+AGG + chr6.2:26133917-26133936 MS.gene019789:CDS 45.0%
GACACGGATGAGTTTGATGT+TGG - chr6.2:26134045-26134064 None:intergenic 45.0%
GATAGTCGAGGAATCTTTGG+GGG + chr6.2:26134844-26134863 MS.gene019789:CDS 45.0%
GATTCCTCGACTATCACCAT+GGG - chr6.2:26134839-26134858 None:intergenic 45.0%
GCTTGAACTTCTCCAACTCT+CGG - chr6.2:26135164-26135183 None:intergenic 45.0%
GGCTTAACGATATGCTTGGA+AGG + chr6.2:26134497-26134516 MS.gene019789:CDS 45.0%
GGTGATAGTCGAGGAATCTT+TGG + chr6.2:26134841-26134860 MS.gene019789:CDS 45.0%
GTCGATGAACGAGTTTAGTC+AGG + chr6.2:26134144-26134163 MS.gene019789:CDS 45.0%
GTGTCTTATATTGGCGAGGA+CGG + chr6.2:26134316-26134335 MS.gene019789:CDS 45.0%
TAGTAGCATCTTCATGGCCT+TGG - chr6.2:26134903-26134922 None:intergenic 45.0%
TCCAAGGTTATGGCTGAAAG+GGG + chr6.2:26134412-26134431 MS.gene019789:CDS 45.0%
TGTCTTATATTGGCGAGGAC+GGG + chr6.2:26134317-26134336 MS.gene019789:CDS 45.0%
TTCGTATCCTCATGGACAGA+TGG + chr6.2:26134963-26134982 MS.gene019789:CDS 45.0%
! GGAGGTATAGTTCAAGGTGA+TGG + chr6.2:26133935-26133954 MS.gene019789:CDS 45.0%
! GGTATAGTTCAAGGTGATGG+TGG + chr6.2:26133938-26133957 MS.gene019789:CDS 45.0%
! GGTGATGGTCATCATCAAGA+AGG + chr6.2:26134217-26134236 MS.gene019789:CDS 45.0%
!! AGTGGACTGATAAGATGGTG+AGG + chr6.2:26134278-26134297 MS.gene019789:CDS 45.0%
!! ATAGTTCAAGGTGATGGTGG+TGG + chr6.2:26133941-26133960 MS.gene019789:CDS 45.0%
!! TTAATCGAAGAAAGCACCGC+CGG - chr6.2:26134073-26134092 None:intergenic 45.0%
AAACAAACACTCGGGGAGTG+AGG + chr6.2:26134174-26134193 MS.gene019789:CDS 50.0%
ACCCCTTTCAGCCATAACCT+TGG - chr6.2:26134416-26134435 None:intergenic 50.0%
CGATGCGAGTTCATCGTCAA+GGG + chr6.2:26133999-26134018 MS.gene019789:CDS 50.0%
GAAGAGAACTACGCTTCCCA+TGG + chr6.2:26134820-26134839 MS.gene019789:CDS 50.0%
GGACAGATGGTACAACCAGA+TGG + chr6.2:26134976-26134995 MS.gene019789:CDS 50.0%
GGTTGTACCATCTGTCCATG+AGG - chr6.2:26134973-26134992 None:intergenic 50.0%
TCGATGCGAGTTCATCGTCA+AGG + chr6.2:26133998-26134017 MS.gene019789:CDS 50.0%
TGTTTCGCCTCAGCAATGTG+AGG + chr6.2:26134441-26134460 MS.gene019789:CDS 50.0%
! AGGAATCTTTGGGGGATTGG+GGG + chr6.2:26134852-26134871 MS.gene019789:CDS 50.0%
! CGAGGAATCTTTGGGGGATT+GGG + chr6.2:26134850-26134869 MS.gene019789:CDS 50.0%
! GAGGAATCTTTGGGGGATTG+GGG + chr6.2:26134851-26134870 MS.gene019789:CDS 50.0%
! TCGAGGAATCTTTGGGGGAT+TGG + chr6.2:26134849-26134868 MS.gene019789:CDS 50.0%
!! AGTTCTGAAGGTGGTAGTGG+TGG + chr6.2:26134340-26134359 MS.gene019789:CDS 50.0%
!! GCAATGGGTTGAATCTCGCT+CGG + chr6.2:26135044-26135063 MS.gene019789:CDS 50.0%
!!! GGTGAGGCTTTTGATAACGG+CGG + chr6.2:26134294-26134313 MS.gene019789:CDS 50.0%
AACTCATCCGTGTCAAGGGC+CGG + chr6.2:26134051-26134070 MS.gene019789:CDS 55.0%
CGCATGATCCTGCATTGCAG+CGG + chr6.2:26134677-26134696 MS.gene019789:CDS 55.0%
CGCTGCAATGCAGGATCATG+CGG - chr6.2:26134679-26134698 None:intergenic 55.0%
CTGAAGCGAAAGGAGATCGG+CGG + chr6.2:26135231-26135250 MS.gene019789:CDS 55.0%
GAGGGAAAAAGGGGTCACCT+TGG + chr6.2:26134245-26134264 MS.gene019789:CDS 55.0%
GCTTCCCATGGTGATAGTCG+AGG + chr6.2:26134832-26134851 MS.gene019789:CDS 55.0%
GGCGGTGTCTTATATTGGCG+AGG + chr6.2:26134312-26134331 MS.gene019789:CDS 55.0%
TGACCATCACCACCTTCCTC+CGG - chr6.2:26134208-26134227 None:intergenic 55.0%
! CGATGAACTCGCATCGATCC+CGG - chr6.2:26133995-26134014 None:intergenic 55.0%
! GGAATCTTTGGGGGATTGGG+GGG + chr6.2:26134853-26134872 MS.gene019789:CDS 55.0%
!! CTGAAGGTGGTAGTGGTGGA+AGG + chr6.2:26134344-26134363 MS.gene019789:CDS 55.0%
!! GGGAGTTCTGAAGGTGGTAG+TGG + chr6.2:26134337-26134356 MS.gene019789:CDS 55.0%
!! GTTCAAGGTGATGGTGGTGG+TGG + chr6.2:26133944-26133963 MS.gene019789:CDS 55.0%
!!! GGTGGTGGTGGTGGTTCTTT+TGG + chr6.2:26133956-26133975 MS.gene019789:CDS 55.0%
!!! GGTGGTGGTGGTTCTTTTGG+TGG + chr6.2:26133959-26133978 MS.gene019789:CDS 55.0%
CACCTTGGCAGCGTGTGAAG+TGG + chr6.2:26134260-26134279 MS.gene019789:CDS 60.0%
GAAGATGAGCCGGAGGAAGG+TGG + chr6.2:26134196-26134215 MS.gene019789:CDS 60.0%
GAGGAAGATGAGCCGGAGGA+AGG + chr6.2:26134193-26134212 MS.gene019789:CDS 60.0%
GAGTGAGGAAGATGAGCCGG+AGG + chr6.2:26134189-26134208 MS.gene019789:CDS 60.0%
GGGGAGTGAGGAAGATGAGC+CGG + chr6.2:26134186-26134205 MS.gene019789:CDS 60.0%
GTCCACTTCACACGCTGCCA+AGG - chr6.2:26134265-26134284 None:intergenic 60.0%
TGCAAGGACCGCTGCAATGC+AGG - chr6.2:26134688-26134707 None:intergenic 60.0%
!! CAAGGTGATGGTGGTGGTGG+TGG + chr6.2:26133947-26133966 MS.gene019789:CDS 60.0%
!! GAGGACGGGAGTTCTGAAGG+TGG + chr6.2:26134331-26134350 MS.gene019789:CDS 60.0%
GAGCCGGAGGAAGGTGGTGA+TGG + chr6.2:26134202-26134221 MS.gene019789:CDS 65.0%
TCATCCGTGTCAAGGGCCGG+CGG + chr6.2:26134054-26134073 MS.gene019789:CDS 65.0%
! GGCGAGGACGGGAGTTCTGA+AGG + chr6.2:26134328-26134347 MS.gene019789:CDS 65.0%
AGCACCGCCGGCCCTTGACA+CGG - chr6.2:26134061-26134080 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 26133914 26135269 26133914 ID=MS.gene019789
chr6.2 mRNA 26133914 26135269 26133914 ID=MS.gene019789.t1;Parent=MS.gene019789
chr6.2 exon 26133914 26135269 26133914 ID=MS.gene019789.t1.exon1;Parent=MS.gene019789.t1
chr6.2 CDS 26133914 26135269 26133914 ID=cds.MS.gene019789.t1;Parent=MS.gene019789.t1
Gene Sequence

>MS.gene019789

ATGGAAGGGAATTTGTCTCAAGGAGGTATAGTTCAAGGTGATGGTGGTGGTGGTGGTTCTTTTGGTGGTTTTGATTTGCCGGGATCGATGCGAGTTCATCGTCAAGGGCAGAGTCCGCATACGATGAACCAACATCAAACTCATCCGTGTCAAGGGCCGGCGGTGCTTTCTTCGATTAATGAAGGTTTTCCTCTTACAATAGGGACGTTGAAGAACTGTGATCAGACGATGTCGATGAACGAGTTTAGTCAGGGAGATAGAAACAAACACTCGGGGAGTGAGGAAGATGAGCCGGAGGAAGGTGGTGATGGTCATCATCAAGAAGGAAGTAGAGGGAAAAAGGGGTCACCTTGGCAGCGTGTGAAGTGGACTGATAAGATGGTGAGGCTTTTGATAACGGCGGTGTCTTATATTGGCGAGGACGGGAGTTCTGAAGGTGGTAGTGGTGGAAGGAAAAAATTTGCAGTGTTGCAGAAAAAGGGTAAGTGGAAATCTATTTCCAAGGTTATGGCTGAAAGGGGTTATCGTGTTTCGCCTCAGCAATGTGAGGATAAATTCAACGATCTTAATAAAAGGTATAAAAGGCTTAACGATATGCTTGGAAGGGGAACTTCCTGTCAAGTTGTTGAAAATCCAGCTTTGTTGGATGTAATCGAGTATCTTAACGAGAAAGAAAAGGATGATGTTAGAAAAATATTGAACTCGAAACATCTTTTCTATGAAGAGATGTGTTCTTACCATAATTGTAATAGATTGCATTTGCCGCATGATCCTGCATTGCAGCGGTCCTTGCAAATAGCTCTCCGAAATAGAGATGATCATGATAACGATGATGTGAGAAGGTCCTATCATGATGATCATGACGAGGATGATCATGATATGGAAACGGACGATCATGATGAGTTCGAAGAGAACTACGCTTCCCATGGTGATAGTCGAGGAATCTTTGGGGGATTGGGGGGAACTACGAAAAGACTAAGACAAGGCCAAGGCCATGAAGATGCTACTACTTTTGGAAATTCTTTAAATTGTCAGGAGTACCATAAAAGTTCGTATCCTCATGGACAGATGGTACAACCAGATGGAAATCAAGCTTTACCGGAAAACATGAAAGCAGCTTGGTTACAGAAGCAATGGGTTGAATCTCGCTCGGTTCAGTTAGAAGAACAGAAGCTACAGATTCAGATTGAGATGATGGAACTAGAGAAACAAAAATTCAAATGGGAGAGGTTTAGCAAGAAAAAAGACCGAGAGTTGGAGAAGTTCAAGCTGGAGAATGACAGAATGAAGATTGAGAATGAACGTATTGCTTTAGAACTGAAGCGAAAGGAGATCGGCGGCACCAGCTTTAACTAG
Protein sequence

>MS.gene019789.t1

MEGNLSQGGIVQGDGGGGGSFGGFDLPGSMRVHRQGQSPHTMNQHQTHPCQGPAVLSSINEGFPLTIGTLKNCDQTMSMNEFSQGDRNKHSGSEEDEPEEGGDGHHQEGSRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDGSSEGGSGGRKKFAVLQKKGKWKSISKVMAERGYRVSPQQCEDKFNDLNKRYKRLNDMLGRGTSCQVVENPALLDVIEYLNEKEKDDVRKILNSKHLFYEEMCSYHNCNRLHLPHDPALQRSLQIALRNRDDHDNDDVRRSYHDDHDEDDHDMETDDHDEFEENYASHGDSRGIFGGLGGTTKRLRQGQGHEDATTFGNSLNCQEYHKSSYPHGQMVQPDGNQALPENMKAAWLQKQWVESRSVQLEEQKLQIQIEMMELEKQKFKWERFSKKKDRELEKFKLENDRMKIENERIALELKRKEIGGTSFN