AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01980.t1 MTR_4g102720 39.597 149 28 2 1 120 1 116 1.92e-25 105
MS.gene01980.t1 MTR_0402s0040 30.078 256 124 8 6 248 60 273 1.56e-21 98.2
MS.gene01980.t1 MTR_7g061980 35.398 113 43 2 4 86 7 119 2.21e-14 70.1
MS.gene01980.t1 MTR_0337s0060 29.577 142 95 3 166 305 14 152 1.43e-12 68.2
MS.gene01980.t1 MTR_6g022070 23.810 126 96 0 120 245 39 164 2.56e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01980.t1 AT4G15090 27.346 373 232 5 108 472 377 718 4.44e-34 138
MS.gene01980.t1 AT4G15090 27.346 373 232 5 108 472 377 718 4.44e-34 138
MS.gene01980.t1 AT4G15090 27.346 373 232 5 108 472 377 718 4.44e-34 138
MS.gene01980.t1 AT4G15090 27.346 373 232 5 108 472 377 718 4.44e-34 138
MS.gene01980.t1 AT4G15090 27.346 373 232 5 108 472 377 718 4.44e-34 138
MS.gene01980.t1 AT3G22170 33.036 224 149 1 120 343 398 620 2.69e-32 132
MS.gene01980.t1 AT3G22170 33.036 224 149 1 120 343 398 620 2.69e-32 132
MS.gene01980.t1 AT4G38170 26.852 324 223 5 122 439 180 495 6.00e-31 127
MS.gene01980.t1 AT4G38180 30.605 281 174 5 120 396 413 676 2.61e-29 123
MS.gene01980.t1 AT1G76320 26.911 327 214 5 121 445 327 630 5.65e-26 113
MS.gene01980.t1 AT1G76320 26.911 327 214 5 121 445 327 630 5.67e-26 113
MS.gene01980.t1 AT1G76320 26.911 327 214 5 121 445 327 630 5.67e-26 113
MS.gene01980.t1 AT1G76320 26.911 327 214 5 121 445 327 630 7.13e-26 112
MS.gene01980.t1 AT1G80010 26.586 331 217 10 79 396 400 717 1.28e-25 112
MS.gene01980.t1 AT4G19990 31.250 256 161 4 122 371 339 585 1.61e-25 112
MS.gene01980.t1 AT4G19990 31.250 256 161 4 122 371 339 585 1.61e-25 112
MS.gene01980.t1 AT4G19990 31.250 256 161 4 122 371 282 528 1.69e-25 111
MS.gene01980.t1 AT4G19990 31.250 256 161 4 122 371 339 585 2.28e-25 111
MS.gene01980.t1 AT4G19990 31.250 256 161 4 122 371 339 585 2.28e-25 111
MS.gene01980.t1 AT4G19990 31.250 256 161 4 122 371 353 599 2.50e-25 111
MS.gene01980.t1 AT4G19990 31.250 256 161 4 122 371 339 585 2.67e-25 111
MS.gene01980.t1 AT2G27110 27.925 265 184 4 122 385 217 475 5.28e-25 110
MS.gene01980.t1 AT2G27110 27.925 265 184 4 122 385 362 620 6.24e-25 110
MS.gene01980.t1 AT2G27110 27.925 265 184 4 122 385 362 620 6.24e-25 110
MS.gene01980.t1 AT3G06250 33.333 228 131 6 120 338 486 701 2.17e-24 108
MS.gene01980.t1 AT3G06250 33.333 228 131 6 120 338 486 701 2.17e-24 108
MS.gene01980.t1 AT3G06250 33.333 228 131 6 120 338 486 701 2.17e-24 108
MS.gene01980.t1 AT5G18960 32.456 228 133 7 120 338 510 725 2.61e-24 108
MS.gene01980.t1 AT5G18960 32.456 228 133 7 120 338 510 725 2.61e-24 108
MS.gene01980.t1 AT2G32250 24.648 284 208 3 122 405 335 612 2.35e-22 102
MS.gene01980.t1 AT2G32250 24.648 284 208 3 122 405 335 612 2.35e-22 102
MS.gene01980.t1 AT2G32250 24.648 284 208 3 122 405 335 612 2.48e-22 102
MS.gene01980.t1 AT2G32250 24.648 284 208 3 122 405 335 612 2.48e-22 102
MS.gene01980.t1 AT2G32250 24.648 284 208 3 122 405 335 612 2.48e-22 102
MS.gene01980.t1 AT2G32250 24.648 284 208 3 122 405 294 571 2.79e-22 101
MS.gene01980.t1 AT2G32250 24.648 284 208 3 122 405 294 571 2.84e-22 101
MS.gene01980.t1 AT2G32250 24.648 284 208 3 122 405 335 612 3.17e-22 101
MS.gene01980.t1 AT1G52520 24.820 278 195 3 131 396 420 695 5.95e-21 97.4
MS.gene01980.t1 AT1G10240 27.111 225 149 5 123 342 394 608 2.37e-17 86.3
MS.gene01980.t1 AT1G10240 27.111 225 149 5 123 342 394 608 2.37e-17 86.3
MS.gene01980.t1 AT5G28530 24.164 269 190 6 79 346 308 563 9.00e-15 77.8
MS.gene01980.t1 AT5G28530 24.164 269 190 6 79 346 371 626 1.11e-14 77.8
MS.gene01980.t1 AT5G28530 25.651 269 182 8 79 346 308 559 4.63e-14 75.5
MS.gene01980.t1 AT5G28530 25.651 269 182 8 79 346 371 622 5.62e-14 75.5
MS.gene01980.t1 AT5G28530 25.651 269 182 8 79 346 371 622 5.62e-14 75.5

Find 85 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCACCTCTTTAAAATATA+AGG 0.176322 2.2:+59529948 None:intergenic
TTGAAGATCCTTGGGAGTTC+TGG 0.234863 2.2:-59531558 MS.gene01980:CDS
TTAAGAAACTCGACAGCTTC+TGG 0.244592 2.2:+59529789 None:intergenic
GACAACATATGAGTTGTTTC+TGG 0.253501 2.2:+59531280 None:intergenic
CCGAAAACCATATCAACTTT+TGG 0.256089 2.2:+59531586 None:intergenic
ACATCCCTCTTTATAAAGTA+TGG 0.262729 2.2:-59530527 MS.gene01980:CDS
TATCTCTTTAATATTGTTAG+AGG 0.283905 2.2:+59529689 None:intergenic
TATTGCAAAGAAAAGGAATA+TGG 0.294986 2.2:-59530105 MS.gene01980:CDS
ATCTCCAGCACAATGTTATA+AGG 0.298579 2.2:-59529859 MS.gene01980:CDS
CCTTGCTTCACAATTTGTTC+TGG 0.300300 2.2:+59531378 None:intergenic
CATATAGGTGCACTTGTAAT+TGG 0.302297 2.2:+59529298 None:intergenic
CTTAAAAGTCTTCATTCATA+TGG 0.313141 2.2:-59529991 MS.gene01980:CDS
TTGGAAGCCAAAAGTTGATA+TGG 0.315145 2.2:-59531593 MS.gene01980:CDS
CTTTGCGCGTTTCTTTCTCT+TGG 0.329292 2.2:+59529566 None:intergenic
ATGAAGAAGACTTTGACATT+AGG 0.337357 2.2:-59530440 MS.gene01980:CDS
CAATTACAAGTGCACCTATA+TGG 0.342061 2.2:-59529297 MS.gene01980:CDS
TGTACAGTATAAAGGAGAAA+TGG 0.347671 2.2:-59530475 MS.gene01980:CDS
TGTCGTAAATTTGAGAGCTT+TGG 0.348811 2.2:-59530032 MS.gene01980:CDS
TGTTATTAGCTAACCATAGA+TGG 0.362982 2.2:+59529253 None:intergenic
TAAGGAAGTTGCTGATGAAT+TGG 0.363801 2.2:-59529769 MS.gene01980:CDS
GATGGAACATCTAGTCAATT+TGG 0.363982 2.2:-59529162 MS.gene01980:CDS
TGCATACAATCAACCATCTA+TGG 0.365263 2.2:-59529266 MS.gene01980:intron
TGAAGAAGACTTTGACATTA+GGG 0.366463 2.2:-59530439 MS.gene01980:CDS
TCGGTAGCTTTGAAGATCCT+TGG 0.368773 2.2:-59531567 MS.gene01980:CDS
ATGGCAAGTGACCTTCGATT+TGG 0.384310 2.2:-59530078 MS.gene01980:CDS
TTTGTTCTGGTCTCTAGTCT+TGG 0.387348 2.2:+59531391 None:intergenic
GCAAAGAATGTACAGTATAA+AGG 0.392434 2.2:-59530483 MS.gene01980:CDS
AGAAGCTGTCGAGTTTCTTA+AGG 0.400377 2.2:-59529787 MS.gene01980:CDS
GATACAAGATGAATGAAGAT+TGG 0.401677 2.2:-59531612 None:intergenic
CGGTAGCTTTGAAGATCCTT+GGG 0.404987 2.2:-59531566 MS.gene01980:CDS
TATGCATTATTAAGCCATAT+AGG 0.412953 2.2:+59529283 None:intergenic
GACTTTAAGAAATGCATGTA+TGG 0.419899 2.2:-59530584 MS.gene01980:intron
AAATTTGTCCCCGCTTTAGT+AGG 0.425975 2.2:-59529836 MS.gene01980:CDS
GTACAGTATAAAGGAGAAAT+GGG 0.433816 2.2:-59530474 MS.gene01980:CDS
GATGGTGCAACACAAGTAAA+GGG 0.435850 2.2:-59529654 MS.gene01980:CDS
AAGAACAATTTGAAGATGGT+TGG 0.449713 2.2:-59530550 MS.gene01980:CDS
GTTCAAAACGTTGGAAAGGT+TGG 0.454209 2.2:-59529605 MS.gene01980:CDS
CTTATGTTATTGCAAAGAAA+AGG 0.457771 2.2:-59530112 MS.gene01980:CDS
AGTAGAGCTTCACAAACTAT+TGG 0.464878 2.2:-59529912 MS.gene01980:CDS
TGATGGTGCAACACAAGTAA+AGG 0.471729 2.2:-59529655 MS.gene01980:CDS
ACAAATTGTGAAGCAAGGTT+AGG 0.474466 2.2:-59531373 MS.gene01980:CDS
GAATACGAGTTCTTCAGTCT+TGG 0.477905 2.2:+59530257 None:intergenic
ATTTCCTTATAACATTGTGC+TGG 0.482058 2.2:+59529855 None:intergenic
TTCACAAATTCAAGAACCTA+TGG 0.484743 2.2:-59529535 MS.gene01980:intron
GAACACCATACTTTATAAAG+AGG 0.486712 2.2:+59530522 None:intergenic
ATTGCAAAGAAAAGGAATAT+GGG 0.487709 2.2:-59530104 MS.gene01980:CDS
ACATTGTAAATCACTAATGT+TGG 0.488437 2.2:+59529339 None:intergenic
TTCAAAACGTTGGAAAGGTT+GGG 0.489068 2.2:-59529604 MS.gene01980:CDS
TGGGAGTTCTGGAAAACTTA+CGG 0.491418 2.2:-59531547 MS.gene01980:CDS
CTTGTAATTGGCGATGCATA+TGG 0.492051 2.2:+59529310 None:intergenic
GAATGTGGATGGAAAATTGA+TGG 0.494783 2.2:-59531344 MS.gene01980:CDS
CTCTTTAAAATATAAGGCTC+AGG 0.500537 2.2:+59529954 None:intergenic
GAGATATCAAGTACTAATGA+TGG 0.502322 2.2:-59529672 MS.gene01980:CDS
AGAAAAGGAATATGGGAGAA+TGG 0.503260 2.2:-59530097 MS.gene01980:CDS
GATGAAGAACAATTTGAAGA+TGG 0.510431 2.2:-59530554 MS.gene01980:CDS
TAGTCATGTTGTAGAAGACT+TGG 0.514820 2.2:-59529886 MS.gene01980:CDS
TTCTTGAATTTGTGAAGCAG+TGG 0.516062 2.2:+59529542 None:intergenic
AATAGTAGGAGTATAAAGCT+TGG 0.523378 2.2:+59530214 None:intergenic
TGTGACGATCCTACTAAAGC+GGG 0.525181 2.2:+59529827 None:intergenic
ATAAGTAGTGAACAAGTGAA+TGG 0.530525 2.2:-59529714 MS.gene01980:CDS
AGGTTGGGTAGAAACGAAAC+TGG 0.532288 2.2:-59529589 MS.gene01980:CDS
CGATTTCCTTTGTTGTACAC+CGG 0.540939 2.2:+59531201 None:intergenic
GTAGAAGAACAAAGCTAAGC+AGG 0.541747 2.2:-59529437 MS.gene01980:intron
TTAGGACTTAAGAATGTGGA+TGG 0.548535 2.2:-59531355 MS.gene01980:CDS
AAGATGTTGTAGAAGAAAAG+CGG 0.551004 2.2:-59530322 MS.gene01980:CDS
AAGGGGTTTAAGAACAAAGA+AGG 0.557368 2.2:-59529636 MS.gene01980:CDS
AAGAACAAAGAAGGTCCAAA+GGG 0.561141 2.2:-59529627 MS.gene01980:CDS
TTATAGGAGCAACTTGATGA+TGG 0.570385 2.2:-59529045 MS.gene01980:intron
TAAGAACAAAGAAGGTCCAA+AGG 0.577271 2.2:-59529628 MS.gene01980:CDS
AACACCATACTTTATAAAGA+GGG 0.583291 2.2:+59530523 None:intergenic
AAGGGTTCAAAACGTTGGAA+AGG 0.583511 2.2:-59529609 MS.gene01980:CDS
GTCCAAAGGGTTCAAAACGT+TGG 0.588871 2.2:-59529614 MS.gene01980:CDS
GCAAATGTAACTCGTGGTTG+TGG 0.597490 2.2:+59531302 None:intergenic
CCAGAACAAATTGTGAAGCA+AGG 0.610911 2.2:-59531378 MS.gene01980:CDS
TTTAGTAGGATCGTCACAGA+AGG 0.612583 2.2:-59529822 MS.gene01980:CDS
CTGTGACGATCCTACTAAAG+CGG 0.618593 2.2:+59529826 None:intergenic
ATTGAACTAGCTGATAGTGC+CGG 0.644559 2.2:-59531220 MS.gene01980:CDS
ATAGTGCCGGTGTACAACAA+AGG 0.660446 2.2:-59531207 MS.gene01980:CDS
TTTCTGGCAAATGTAACTCG+TGG 0.662245 2.2:+59531296 None:intergenic
CAAACAACTCATACTCACGT+TGG 0.665525 2.2:+59530180 None:intergenic
ATGGTGCAACACAAGTAAAG+GGG 0.679306 2.2:-59529653 MS.gene01980:CDS
AAGGTTAGGACTTAAGAATG+TGG 0.679784 2.2:-59531359 MS.gene01980:CDS
AGCATGCTTTGTGAATAGCA+TGG 0.683918 2.2:-59530156 MS.gene01980:CDS
GTGACGATCCTACTAAAGCG+GGG 0.703294 2.2:+59529828 None:intergenic
GAGTTCTGGAAAACTTACGG+TGG 0.762461 2.2:-59531544 MS.gene01980:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATTAATAATACCAT+AGG + chr2.2:59531126-59531145 None:intergenic 10.0%
!!! TATTAAAAATTTTATGAGTA+AGG - chr2.2:59530264-59530283 MS.gene01980:CDS 10.0%
!!! AATTATTTTGGTTTTTATGT+AGG - chr2.2:59531452-59531471 MS.gene01980:intron 15.0%
!!! ACTTGCATTTTTTAAATTAT+AGG - chr2.2:59531581-59531600 MS.gene01980:CDS 15.0%
!!! ATTATTTTGGTTTTTATGTA+GGG - chr2.2:59531453-59531472 MS.gene01980:intron 15.0%
!!! GTTTAGTGTTTAAATTATTT+TGG - chr2.2:59531440-59531459 MS.gene01980:intron 15.0%
!! AAAAAAAAGAGAAAGAAGTT+TGG - chr2.2:59529541-59529560 MS.gene01980:CDS 20.0%
!! TATCTCTTTAATATTGTTAG+AGG + chr2.2:59530956-59530975 None:intergenic 20.0%
!! TTAAACACTAAACATAGTTA+AGG + chr2.2:59531433-59531452 None:intergenic 20.0%
!!! TTGATTGATTACAGTTATTT+TGG - chr2.2:59529695-59529714 MS.gene01980:CDS 20.0%
! AACACCATACTTTATAAAGA+GGG + chr2.2:59530122-59530141 None:intergenic 25.0%
! ACACTTAGGAAATTTAATGA+AGG - chr2.2:59530015-59530034 MS.gene01980:CDS 25.0%
! ACATTGTAAATCACTAATGT+TGG + chr2.2:59531306-59531325 None:intergenic 25.0%
! ACTTAGGAAATTTAATGAAG+GGG - chr2.2:59530017-59530036 MS.gene01980:CDS 25.0%
! AGATTATACACACAGAAAAA+AGG - chr2.2:59529145-59529164 MS.gene01980:CDS 25.0%
! ATTGCAAAGAAAAGGAATAT+GGG - chr2.2:59530538-59530557 MS.gene01980:CDS 25.0%
! CAAAATGGAATTAAACACTT+AGG - chr2.2:59530001-59530020 MS.gene01980:CDS 25.0%
! CACGAAAAAAAGGAATATAA+AGG + chr2.2:59531186-59531205 None:intergenic 25.0%
! CACTTAGGAAATTTAATGAA+GGG - chr2.2:59530016-59530035 MS.gene01980:CDS 25.0%
! CTTAAAAGTCTTCATTCATA+TGG - chr2.2:59530651-59530670 MS.gene01980:intron 25.0%
! CTTATGTTATTGCAAAGAAA+AGG - chr2.2:59530530-59530549 MS.gene01980:CDS 25.0%
! TATGCATTATTAAGCCATAT+AGG + chr2.2:59531362-59531381 None:intergenic 25.0%
! TATTGCAAAGAAAAGGAATA+TGG - chr2.2:59530537-59530556 MS.gene01980:CDS 25.0%
! TGGAATAAGTCAAAAATAGT+AGG + chr2.2:59530445-59530464 None:intergenic 25.0%
!! AAATTTTATGAGTAAGGACT+TGG - chr2.2:59530270-59530289 MS.gene01980:CDS 25.0%
!!! TAGTTTTACTAGCTTATTGA+TGG - chr2.2:59531509-59531528 MS.gene01980:intron 25.0%
AAGAACAATTTGAAGATGGT+TGG - chr2.2:59530092-59530111 MS.gene01980:CDS 30.0%
AAGATGTTGTAGAAGAAAAG+CGG - chr2.2:59530320-59530339 MS.gene01980:CDS 30.0%
ACATCCCTCTTTATAAAGTA+TGG - chr2.2:59530115-59530134 MS.gene01980:CDS 30.0%
AGGTTTCCAAAAATGTAATG+AGG - chr2.2:59531225-59531244 MS.gene01980:CDS 30.0%
ATAAGTAGTGAACAAGTGAA+TGG - chr2.2:59530928-59530947 MS.gene01980:intron 30.0%
ATGAAGAAGACTTTGACATT+AGG - chr2.2:59530202-59530221 MS.gene01980:CDS 30.0%
ATGGTGTTCAGAAAAATGAT+TGG - chr2.2:59530134-59530153 MS.gene01980:CDS 30.0%
ATTTCCTTATAACATTGTGC+TGG + chr2.2:59530790-59530809 None:intergenic 30.0%
CTTAGGAAATTTAATGAAGG+GGG - chr2.2:59530018-59530037 MS.gene01980:CDS 30.0%
GAACACCATACTTTATAAAG+AGG + chr2.2:59530123-59530142 None:intergenic 30.0%
GAGATATCAAGTACTAATGA+TGG - chr2.2:59530970-59530989 MS.gene01980:intron 30.0%
GATGAAGAACAATTTGAAGA+TGG - chr2.2:59530088-59530107 MS.gene01980:CDS 30.0%
GATTTACTGAGTAAAGAAGT+AGG - chr2.2:59529467-59529486 MS.gene01980:intron 30.0%
GCAAAGAATGTACAGTATAA+AGG - chr2.2:59530159-59530178 MS.gene01980:CDS 30.0%
GTACAGTATAAAGGAGAAAT+GGG - chr2.2:59530168-59530187 MS.gene01980:CDS 30.0%
TACTGATCAAGACAAATCAA+TGG - chr2.2:59529916-59529935 MS.gene01980:CDS 30.0%
TATACACACAGAAAAAAGGA+TGG - chr2.2:59529149-59529168 MS.gene01980:CDS 30.0%
TGAAGAAGACTTTGACATTA+GGG - chr2.2:59530203-59530222 MS.gene01980:CDS 30.0%
TGATCAGTAAAAACTGTTTG+AGG + chr2.2:59529905-59529924 None:intergenic 30.0%
TGTACAGTATAAAGGAGAAA+TGG - chr2.2:59530167-59530186 MS.gene01980:CDS 30.0%
TGTTATTAGCTAACCATAGA+TGG + chr2.2:59531392-59531411 None:intergenic 30.0%
TGTTCTTCTACACGAAAAAA+AGG + chr2.2:59531196-59531215 None:intergenic 30.0%
TTCACAAATTCAAGAACCTA+TGG - chr2.2:59531107-59531126 MS.gene01980:intron 30.0%
TTTCCAAAAATGTAATGAGG+CGG - chr2.2:59531228-59531247 MS.gene01980:CDS 30.0%
! AATAGTAGGAGTATAAAGCT+TGG + chr2.2:59530431-59530450 None:intergenic 30.0%
! GACTTTAAGAAATGCATGTA+TGG - chr2.2:59530058-59530077 MS.gene01980:CDS 30.0%
! TGTATTCTTTTCCAAATCGA+AGG + chr2.2:59530578-59530597 None:intergenic 30.0%
!! AGCCTTATATTTTAAAGAGG+TGG - chr2.2:59530692-59530711 MS.gene01980:intron 30.0%
!! CTCTTTAAAATATAAGGCTC+AGG + chr2.2:59530691-59530710 None:intergenic 30.0%
!! CTGAGCCTTATATTTTAAAG+AGG - chr2.2:59530689-59530708 MS.gene01980:intron 30.0%
!! GTCCACCTCTTTAAAATATA+AGG + chr2.2:59530697-59530716 None:intergenic 30.0%
!!! CCAAAAGTTGATATGGTTTT+CGG - chr2.2:59529056-59529075 MS.gene01980:intron 30.0%
!!! TCTTCAGTCTTGGAATTTTT+TGG + chr2.2:59530378-59530397 None:intergenic 30.0%
AAGAACAAAGAAGGTCCAAA+GGG - chr2.2:59531015-59531034 MS.gene01980:intron 35.0%
AAGGGGTTTAAGAACAAAGA+AGG - chr2.2:59531006-59531025 MS.gene01980:intron 35.0%
AAGGTTAGGACTTAAGAATG+TGG - chr2.2:59529283-59529302 MS.gene01980:CDS 35.0%
ACAAATTGTGAAGCAAGGTT+AGG - chr2.2:59529269-59529288 MS.gene01980:CDS 35.0%
AGAAAAGGAATATGGGAGAA+TGG - chr2.2:59530545-59530564 MS.gene01980:CDS 35.0%
AGAAAGAAGTTTGGTACAAG+GGG - chr2.2:59529550-59529569 MS.gene01980:CDS 35.0%
AGAGAAAGAAGTTTGGTACA+AGG - chr2.2:59529548-59529567 MS.gene01980:CDS 35.0%
AGTAGAGCTTCACAAACTAT+TGG - chr2.2:59530730-59530749 MS.gene01980:intron 35.0%
ATCTCCAGCACAATGTTATA+AGG - chr2.2:59530783-59530802 MS.gene01980:intron 35.0%
ATGGTTCAGTTTCTTCTTGT+AGG - chr2.2:59529168-59529187 MS.gene01980:CDS 35.0%
CAATATCTAGCTGATAAGCA+TGG + chr2.2:59529634-59529653 None:intergenic 35.0%
CAATTACAAGTGCACCTATA+TGG - chr2.2:59531345-59531364 MS.gene01980:CDS 35.0%
CATATAGGTGCACTTGTAAT+TGG + chr2.2:59531347-59531366 None:intergenic 35.0%
GAATGTGGATGGAAAATTGA+TGG - chr2.2:59529298-59529317 MS.gene01980:CDS 35.0%
GAGAAAGAAGTTTGGTACAA+GGG - chr2.2:59529549-59529568 MS.gene01980:CDS 35.0%
GATGGAACATCTAGTCAATT+TGG - chr2.2:59531480-59531499 MS.gene01980:intron 35.0%
TAAGAACAAAGAAGGTCCAA+AGG - chr2.2:59531014-59531033 MS.gene01980:intron 35.0%
TAAGGAAGTTGCTGATGAAT+TGG - chr2.2:59530873-59530892 MS.gene01980:intron 35.0%
TAGTCATGTTGTAGAAGACT+TGG - chr2.2:59530756-59530775 MS.gene01980:intron 35.0%
TGATAAGCATGGTAGAAAGT+TGG + chr2.2:59529623-59529642 None:intergenic 35.0%
TGCATACAATCAACCATCTA+TGG - chr2.2:59531376-59531395 MS.gene01980:CDS 35.0%
TGTCGTAAATTTGAGAGCTT+TGG - chr2.2:59530610-59530629 MS.gene01980:intron 35.0%
TTACTGAGTAAAGAAGTAGG+AGG - chr2.2:59529470-59529489 MS.gene01980:intron 35.0%
TTAGGACTTAAGAATGTGGA+TGG - chr2.2:59529287-59529306 MS.gene01980:CDS 35.0%
TTATAGGAGCAACTTGATGA+TGG - chr2.2:59531597-59531616 MS.gene01980:CDS 35.0%
TTCAAAACGTTGGAAAGGTT+GGG - chr2.2:59531038-59531057 MS.gene01980:intron 35.0%
TTCCAAAAATGTAATGAGGC+GGG - chr2.2:59531229-59531248 MS.gene01980:CDS 35.0%
TTCTTGAATTTGTGAAGCAG+TGG + chr2.2:59531103-59531122 None:intergenic 35.0%
! ATCAGATCACCAATGTGTTT+TGG - chr2.2:59529657-59529676 MS.gene01980:CDS 35.0%
! CCGAAAACCATATCAACTTT+TGG + chr2.2:59529059-59529078 None:intergenic 35.0%
! GACAACATATGAGTTGTTTC+TGG + chr2.2:59529365-59529384 None:intergenic 35.0%
! TCAGATCACCAATGTGTTTT+GGG - chr2.2:59529658-59529677 MS.gene01980:CDS 35.0%
!! TTGGAAGCCAAAAGTTGATA+TGG - chr2.2:59529049-59529068 MS.gene01980:intron 35.0%
!!! ATTGATGGTGCATGATTTTG+TGG - chr2.2:59529313-59529332 MS.gene01980:CDS 35.0%
AAACTGCTGAGTCATATGAG+TGG - chr2.2:59529840-59529859 MS.gene01980:CDS 40.0%
AAATTTGTCCCCGCTTTAGT+AGG - chr2.2:59530806-59530825 MS.gene01980:intron 40.0%
AAGGGTTCAAAACGTTGGAA+AGG - chr2.2:59531033-59531052 MS.gene01980:intron 40.0%
AATCCTGAGATGATTGCTAG+TGG + chr2.2:59529770-59529789 None:intergenic 40.0%
ACATAAACCATGGTAAGCTC+CGG + chr2.2:59529966-59529985 None:intergenic 40.0%
AGAAGCTGTCGAGTTTCTTA+AGG - chr2.2:59530855-59530874 MS.gene01980:intron 40.0%
AGCATGCTTTGTGAATAGCA+TGG - chr2.2:59530486-59530505 MS.gene01980:CDS 40.0%
ATGGTGCAACACAAGTAAAG+GGG - chr2.2:59530989-59531008 MS.gene01980:intron 40.0%
CAAAAATTACAGCTCCTCGA+TGG + chr2.2:59529799-59529818 None:intergenic 40.0%
CAAACAACTCATACTCACGT+TGG + chr2.2:59530465-59530484 None:intergenic 40.0%
CCAGAACAAATTGTGAAGCA+AGG - chr2.2:59529264-59529283 MS.gene01980:intron 40.0%
CTTACCATGGTTTATGTACG+TGG - chr2.2:59529969-59529988 MS.gene01980:CDS 40.0%
CTTGTAATTGGCGATGCATA+TGG + chr2.2:59531335-59531354 None:intergenic 40.0%
GAATACGAGTTCTTCAGTCT+TGG + chr2.2:59530388-59530407 None:intergenic 40.0%
GATGGTGCAACACAAGTAAA+GGG - chr2.2:59530988-59531007 MS.gene01980:intron 40.0%
GTAGAAGAACAAAGCTAAGC+AGG - chr2.2:59531205-59531224 MS.gene01980:CDS 40.0%
GTTCAAAACGTTGGAAAGGT+TGG - chr2.2:59531037-59531056 MS.gene01980:intron 40.0%
TACGGTGGTAAGGTTTGATT+CGG - chr2.2:59529113-59529132 MS.gene01980:intron 40.0%
TTAAGAAACTCGACAGCTTC+TGG + chr2.2:59530856-59530875 None:intergenic 40.0%
TTTAGTAGGATCGTCACAGA+AGG - chr2.2:59530820-59530839 MS.gene01980:intron 40.0%
TTTGTTCTGGTCTCTAGTCT+TGG + chr2.2:59529254-59529273 None:intergenic 40.0%
! AGGTTTGTTTGCTGCAAAGA+AGG - chr2.2:59529188-59529207 MS.gene01980:intron 40.0%
! ATCCCGCCTCATTACATTTT+TGG + chr2.2:59531234-59531253 None:intergenic 40.0%
! ATTGAACTAGCTGATAGTGC+CGG - chr2.2:59529422-59529441 MS.gene01980:CDS 40.0%
! CATCGAGGAGCTGTAATTTT+TGG - chr2.2:59529797-59529816 MS.gene01980:CDS 40.0%
! CCTTGCTTCACAATTTGTTC+TGG + chr2.2:59529267-59529286 None:intergenic 40.0%
! CGATTTCCTTTGTTGTACAC+CGG + chr2.2:59529444-59529463 None:intergenic 40.0%
! GTTTTATGATCTCGCTTGTC+TGG + chr2.2:59529224-59529243 None:intergenic 40.0%
! GTTTTTATGTAGGGAGACGA+TGG - chr2.2:59531462-59531481 MS.gene01980:intron 40.0%
! TAAGTTTTCCAGAACTCCCA+AGG + chr2.2:59529095-59529114 None:intergenic 40.0%
! TGATGGTGCAACACAAGTAA+AGG - chr2.2:59530987-59531006 MS.gene01980:intron 40.0%
! TTTCTGGCAAATGTAACTCG+TGG + chr2.2:59529349-59529368 None:intergenic 40.0%
!! TGGGAGTTCTGGAAAACTTA+CGG - chr2.2:59529095-59529114 MS.gene01980:intron 40.0%
!! TTCCAACGTTTTGAACCCTT+TGG + chr2.2:59531033-59531052 None:intergenic 40.0%
AAATTACAGCTCCTCGATGG+TGG + chr2.2:59529796-59529815 None:intergenic 45.0%
AAGAAGTTTGGTACAAGGGG+AGG - chr2.2:59529553-59529572 MS.gene01980:CDS 45.0%
ACGGTGGTAAGGTTTGATTC+GGG - chr2.2:59529114-59529133 MS.gene01980:intron 45.0%
ACGTGGCACTTGATGCAAAA+TGG - chr2.2:59529986-59530005 MS.gene01980:CDS 45.0%
AGACCACTAGCAATCATCTC+AGG - chr2.2:59529764-59529783 MS.gene01980:CDS 45.0%
AGCATCTGCCCAAAACACAT+TGG + chr2.2:59529669-59529688 None:intergenic 45.0%
AGGTTGGGTAGAAACGAAAC+TGG - chr2.2:59531053-59531072 MS.gene01980:intron 45.0%
AGTGCCACGTACATAAACCA+TGG + chr2.2:59529976-59529995 None:intergenic 45.0%
ATGGCAAGTGACCTTCGATT+TGG - chr2.2:59530564-59530583 MS.gene01980:CDS 45.0%
CATAAACCATGGTAAGCTCC+GGG + chr2.2:59529965-59529984 None:intergenic 45.0%
CTGGAAAACTTACGGTGGTA+AGG - chr2.2:59529103-59529122 MS.gene01980:intron 45.0%
CTGTGACGATCCTACTAAAG+CGG + chr2.2:59530819-59530838 None:intergenic 45.0%
CTTTGCGCGTTTCTTTCTCT+TGG + chr2.2:59531079-59531098 None:intergenic 45.0%
GCAAATGTAACTCGTGGTTG+TGG + chr2.2:59529343-59529362 None:intergenic 45.0%
GTCCAAAGGGTTCAAAACGT+TGG - chr2.2:59531028-59531047 MS.gene01980:intron 45.0%
TCAGGATTTAACCACCATCG+AGG - chr2.2:59529782-59529801 MS.gene01980:CDS 45.0%
TGTGACGATCCTACTAAAGC+GGG + chr2.2:59530818-59530837 None:intergenic 45.0%
TTGAAGATCCTTGGGAGTTC+TGG - chr2.2:59529084-59529103 MS.gene01980:intron 45.0%
! GATGGTGCATGATTTTGTGG+AGG - chr2.2:59529316-59529335 MS.gene01980:CDS 45.0%
!! ATAGTGCCGGTGTACAACAA+AGG - chr2.2:59529435-59529454 MS.gene01980:CDS 45.0%
!! ATGTGTTTTGGGCAGATGCT+AGG - chr2.2:59529669-59529688 MS.gene01980:CDS 45.0%
!! CGGTAGCTTTGAAGATCCTT+GGG - chr2.2:59529076-59529095 MS.gene01980:intron 45.0%
!! GAGTTCTGGAAAACTTACGG+TGG - chr2.2:59529098-59529117 MS.gene01980:intron 45.0%
!! TCGGTAGCTTTGAAGATCCT+TGG - chr2.2:59529075-59529094 MS.gene01980:intron 45.0%
GTGACGATCCTACTAAAGCG+GGG + chr2.2:59530817-59530836 None:intergenic 50.0%
! CGGTGGTAAGGTTTGATTCG+GGG - chr2.2:59529115-59529134 MS.gene01980:intron 50.0%
!! AATGGCAAAAGCGTTAGCCG+AGG - chr2.2:59529934-59529953 MS.gene01980:CDS 50.0%
!! GTAAGGTTTGATTCGGGGTG+AGG - chr2.2:59529120-59529139 MS.gene01980:intron 50.0%
AGTTTGGTACAAGGGGAGGC+TGG - chr2.2:59529557-59529576 MS.gene01980:CDS 55.0%
GTAAGCTCCGGGCATAACCT+CGG + chr2.2:59529954-59529973 None:intergenic 55.0%
GTTATGCCCGGAGCTTACCA+TGG - chr2.2:59529956-59529975 MS.gene01980:CDS 55.0%
GCGTTAGCCGAGGTTATGCC+CGG - chr2.2:59529944-59529963 MS.gene01980:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 59529038 59531626 59529038 ID=MS.gene01980
chr2.2 mRNA 59529038 59531626 59529038 ID=MS.gene01980.t1;Parent=MS.gene01980
chr2.2 exon 59531545 59531626 59531545 ID=MS.gene01980.t1.exon1;Parent=MS.gene01980.t1
chr2.2 CDS 59531545 59531626 59531545 ID=cds.MS.gene01980.t1;Parent=MS.gene01980.t1
chr2.2 exon 59531180 59531457 59531180 ID=MS.gene01980.t1.exon2;Parent=MS.gene01980.t1
chr2.2 CDS 59531180 59531457 59531180 ID=cds.MS.gene01980.t1;Parent=MS.gene01980.t1
chr2.2 exon 59529536 59530597 59529536 ID=MS.gene01980.t1.exon3;Parent=MS.gene01980.t1
chr2.2 CDS 59529536 59530597 59529536 ID=cds.MS.gene01980.t1;Parent=MS.gene01980.t1
chr2.2 exon 59529267 59529455 59529267 ID=MS.gene01980.t1.exon4;Parent=MS.gene01980.t1
chr2.2 CDS 59529267 59529455 59529267 ID=cds.MS.gene01980.t1;Parent=MS.gene01980.t1
chr2.2 exon 59529134 59529190 59529134 ID=MS.gene01980.t1.exon5;Parent=MS.gene01980.t1
chr2.2 CDS 59529134 59529190 59529134 ID=cds.MS.gene01980.t1;Parent=MS.gene01980.t1
chr2.2 exon 59529038 59529061 59529038 ID=MS.gene01980.t1.exon6;Parent=MS.gene01980.t1
chr2.2 CDS 59529038 59529061 59529038 ID=cds.MS.gene01980.t1;Parent=MS.gene01980.t1
Gene Sequence

>MS.gene01980

ATGAATGAAGATTGGAAGCCAAAAGTTGATATGGTTTTCGGTAGCTTTGAAGATCCTTGGGAGTTCTGGAAAACTTACGGTGGTAAGGTTTGATTCGGGGTGAGGAAAGATTATACACACAGAAAAAAGGATGGTTCAGTTTCTTCTTGTAGGTTTGTTTGCTGCAAAGAAGGCATACGAAAGCCAGACAAGCGAGATCATAAAACAAAGAATCCAAGACTAGAGACCAGAACAAATTGTGAAGCAAGGTTAGGACTTAAGAATGTGGATGGAAAATTGATGGTGCATGATTTTGTGGAGGACCACAACCACGAGTTACATTTGCCAGAAACAACTCATATGTTGTCTTCTCAACGAAAGATTTCTGAAATTCAATGTCAACAAATTGAACTAGCTGATAGTGCCGGTGTACAACAAAGGAAATCGTTTGATTTACTGAGTAAAGAAGTAGGAGGCAGAACTAACTTGAGTTTTATTTGTCTTGATCAAAAGAATTATCTTCGAAAAAAAAGAGAAAGAAGTTTGGTACAAGGGGAGGCTGGCTATTTACTGCAATACTTTCAAAGAAAGTCAGTAGAAAATCCAACTTTCTACCATGCTTATCAGCTAGATATTGAAGATCAGATCACCAATGTGTTTTGGGCAGATGCTAGGATGTTGATTGATTACAGTTATTTTGGTGATGTTGTTTCTCTTGATTCAACATATTGCACAAATAGTTCACACAGACCACTAGCAATCATCTCAGGATTTAACCACCATCGAGGAGCTGTAATTTTTGGAGCTGCATTATTATATGATGAAACTGCTGAGTCATATGAGTGGCTCTTTGAGACATTTCTAGAAGCACATAAGCAGAAAATGCCTCAAACAGTTTTTACTGATCAAGACAAATCAATGGCAAAAGCGTTAGCCGAGGTTATGCCCGGAGCTTACCATGGTTTATGTACGTGGCACTTGATGCAAAATGGAATTAAACACTTAGGAAATTTAATGAAGGGGGAATCTTATTTTCTTACTGACTTTAAGAAATGCATGTATGGTTATGAAGATGAAGAACAATTTGAAGATGGTTGGACATCCCTCTTTATAAAGTATGGTGTTCAGAAAAATGATTGGTTGCAAAGAATGTACAGTATAAAGGAGAAATGGGCATCTTGTTACATGAAGAAGACTTTGACATTAGGGATGCGAAGCACTCAACATAGTGAAAGCGTGAATGCAGATATTAAAAATTTTATGAGTAAGGACTTGGATTTAATTAAATTTTTTGAGCGTTTTGAAGATGTTGTAGAAGAAAAGCGGTATAAAGAATTGAAGTGTGAATTTGAAGCACGCCAAAAAATTCCAAGACTGAAGAACTCGTATTCTGATATTTTGCAACAAGTGTCCAAGCTTTATACTCCTACTATTTTTGACTTATTCCAACGTGAGTATGAGTTGTTTGAAGCATGCTTTGTGAATAGCATGGACATACAAACATCATCATCTACTTATGTTATTGCAAAGAAAAGGAATATGGGAGAATGGCAAGTGACCTTCGATTTGGAAAAGAATACAATTTGTTGCTCTTGTCGTAAATTTGAGAGCTTTGGCATACTTTGTTGTCATTGCTTAAAAGTCTTCATTCATATGGACGTTACTTCAGTGCCTGAGCCTTATATTTTAAAGAGGTGGACAAAGATATCAAGAAGTAGAGCTTCACAAACTATTGGTGTTAGTCATGTTGTAGAAGACTTGGATTTATCTCCAGCACAATGTTATAAGGAAATTTGTCCCCGCTTTAGTAGGATCGTCACAGAAGGATGTAGAAGTCCAGAAGCTGTCGAGTTTCTTAAGGAAGTTGCTGATGAATTGGATGAGCAAATGTTGAAGTTTCAAAATATGCAAATAAGTAGTGAACAAGTGAATGGAACCTCTAACAATATTAAAGAGATATCAAGTACTAATGATGGTGCAACACAAGTAAAGGGGTTTAAGAACAAAGAAGGTCCAAAGGGTTCAAAACGTTGGAAAGGTTGGGTAGAAACGAAACTGGCCAAGAGAAAGAAACGCGCAAAGTCCACTGCTTCACAAATTCAAGAACCTATGGTATTATTAATATATTTAGTTTTATTTTTTGTTTTTGTTGACTACATAAGCTCACCTTTATATTCCTTTTTTTCGTGTAGAAGAACAAAGCTAAGCAGGTTTCCAAAAATGTAATGAGGCGGGATGAAGTGTCAAACACAAGTGCTTCACAAAGTCAAAAGCAATATGTTGTGTCCAACATTAGTGATTTACAATGTCAACAGCCATATGCATCGCCAATTACAAGTGCACCTATATGGCTTAATAATGCATACAATCAACCATCTATGGTTAGCTAATAACAATTTGAATTTGTGAATGACCTTAACTATGTTTAGTGTTTAAATTATTTTGGTTTTTATGTAGGGAGACGATGGAACATCTAGTCAATTTGGTGTCGCTAGTTTTACTAGCTTATTGATGGTAAATTTCAAATTATACGATTCACTTTCAAATCTATATATATAATATTAACTTGCATTTTTTAAATTATAGGAGCAACTTGATGATGGTACCTGA
Protein sequence

>MS.gene01980.t1

MNEDWKPKVDMVFGSFEDPWEFWKTYGEGIRKPDKRDHKTKNPRLETRTNCEARLGLKNVDGKLMVHDFVEDHNHELHLPETTHMLSSQRKISEIQCQQIELADSAGVQQRKSFDLLSKEKCMYGYEDEEQFEDGWTSLFIKYGVQKNDWLQRMYSIKEKWASCYMKKTLTLGMRSTQHSESVNADIKNFMSKDLDLIKFFERFEDVVEEKRYKELKCEFEARQKIPRLKNSYSDILQQVSKLYTPTIFDLFQREYELFEACFVNSMDIQTSSSTYVIAKKRNMGEWQVTFDLEKNTICCSCRKFESFGILCCHCLKVFIHMDVTSVPEPYILKRWTKISRSRASQTIGVSHVVEDLDLSPAQCYKEICPRFSRIVTEGCRSPEAVEFLKEVADELDEQMLKFQNMQISSEQVNGTSNNIKEISSTNDGATQVKGFKNKEGPKGSKRWKGWVETKLAKRKKRAKSTASQIQEPMKNKAKQVSKNVMRRDEVSNTSASQSQKQYVVSNISDLQCQQPYASPITSAPIWLNNAYNQPSMGDDGTSSQFGVASFTSLLMEQLDDGT