AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019804

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019804.t1 MTR_6g034945 98.065 310 6 0 1 310 1 310 0.0 619
MS.gene019804.t1 MTR_5g075390 52.459 244 84 9 26 261 49 268 7.55e-61 197
MS.gene019804.t1 MTR_3g467120 44.710 293 106 14 26 281 36 309 3.26e-52 176
MS.gene019804.t1 MTR_4g072090 57.714 175 66 3 76 243 279 452 2.77e-49 171
MS.gene019804.t1 MTR_3g094020 49.541 218 84 6 28 243 7 200 3.72e-49 166
MS.gene019804.t1 MTR_2g099050 57.143 168 57 4 107 260 168 334 5.77e-47 163
MS.gene019804.t1 MTR_4g072090 56.442 163 63 3 76 231 279 440 1.54e-43 155
MS.gene019804.t1 MTR_1g023690 46.818 220 98 7 74 281 303 515 6.58e-33 127
MS.gene019804.t1 MTR_4g079500 43.966 116 58 1 149 257 192 307 2.56e-19 87.0
MS.gene019804.t1 MTR_2g090900 47.000 100 53 0 149 248 189 288 8.67e-19 85.5
MS.gene019804.t1 MTR_2g090900 47.000 100 53 0 149 248 189 288 1.22e-18 85.5
MS.gene019804.t1 MTR_1g099030 34.361 227 132 6 31 252 11 225 1.76e-18 84.0
MS.gene019804.t1 MTR_8g088650 30.153 262 141 11 11 244 75 322 1.46e-13 70.9
MS.gene019804.t1 MTR_0405s0060 47.619 84 37 2 100 182 78 155 3.61e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019804.t1 AT1G43700 43.988 341 126 11 13 299 12 341 3.01e-66 211
MS.gene019804.t1 AT2G31370 64.828 145 41 2 109 244 151 294 3.94e-50 171
MS.gene019804.t1 AT2G31370 59.880 167 56 3 109 265 151 316 9.82e-50 170
MS.gene019804.t1 AT2G31370 59.880 167 56 3 109 265 151 316 9.82e-50 170
MS.gene019804.t1 AT2G31370 59.880 167 56 3 109 265 151 316 9.82e-50 170
MS.gene019804.t1 AT2G31370 59.880 167 56 3 109 265 151 316 9.82e-50 170
MS.gene019804.t1 AT2G31370 59.880 167 56 3 109 265 151 316 9.82e-50 170
MS.gene019804.t1 AT2G31370 59.880 167 56 3 109 265 151 316 9.82e-50 170
MS.gene019804.t1 AT2G40620 46.000 250 110 8 2 243 8 240 3.54e-49 168
MS.gene019804.t1 AT4G38900 55.497 191 62 5 73 243 299 486 4.89e-49 171
MS.gene019804.t1 AT4G38900 55.497 191 62 5 73 243 299 486 4.89e-49 171
MS.gene019804.t1 AT4G38900 53.807 197 62 6 73 243 299 492 1.36e-46 165
MS.gene019804.t1 AT1G06070 54.598 174 63 3 109 273 159 325 1.29e-45 160
MS.gene019804.t1 AT1G06850 62.791 129 47 1 123 251 121 248 2.57e-45 157
MS.gene019804.t1 AT2G21230 54.444 180 66 3 76 243 287 462 1.45e-44 159
MS.gene019804.t1 AT2G21230 54.444 180 66 3 76 243 287 462 1.45e-44 159
MS.gene019804.t1 AT2G21230 52.688 186 66 4 76 243 287 468 2.71e-42 153
MS.gene019804.t1 AT2G21230 53.846 169 62 3 76 232 287 451 3.92e-40 146
MS.gene019804.t1 AT1G06850 72.152 79 21 1 123 201 121 198 7.32e-28 108
MS.gene019804.t1 AT2G13150 35.503 169 93 4 83 244 83 242 7.04e-19 84.7
MS.gene019804.t1 AT2G42380 41.880 117 57 1 149 254 184 300 7.97e-19 85.5
MS.gene019804.t1 AT3G58120 47.368 95 50 0 149 243 200 294 1.29e-18 85.1
MS.gene019804.t1 AT2G12940 32.597 181 108 5 83 260 82 251 1.94e-17 81.3
MS.gene019804.t1 AT2G12900 38.235 102 62 1 143 244 109 209 3.02e-16 77.4
MS.gene019804.t1 AT2G42380 45.238 84 46 0 149 232 184 267 6.01e-15 73.9
MS.gene019804.t1 AT3G58120 45.679 81 44 0 149 229 200 280 5.64e-14 71.2
MS.gene019804.t1 AT1G58110 28.571 252 135 7 22 244 87 322 5.31e-13 69.3
MS.gene019804.t1 AT1G58110 28.571 252 135 7 22 244 87 322 5.31e-13 69.3
MS.gene019804.t1 AT2G42380 37.607 117 51 2 149 254 184 289 1.41e-12 67.4
MS.gene019804.t1 AT2G21235 38.235 102 62 1 151 252 359 459 2.79e-12 67.4
MS.gene019804.t1 AT2G42380 64.444 45 16 0 149 193 184 228 1.87e-11 63.2
MS.gene019804.t1 AT2G42380 64.444 45 16 0 149 193 184 228 1.87e-11 63.2

Find 88 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGCCAGGTTGTGTCTGC+TGG 0.247308 6.2:+25637181 None:intergenic
TTTACAGGATTCTTGCTAAT+AGG 0.313599 6.2:-25640268 MS.gene019804:intron
GATGTTGTATGAGTTACTTC+TGG 0.337679 6.2:+25637094 None:intergenic
TTGATCCTAAGAGAGCTAAA+AGG 0.339939 6.2:-25641816 MS.gene019804:intron
TGATTTGACTGCTCAGAATA+AGG 0.343859 6.2:-25637909 MS.gene019804:CDS
CGTCAGAGGGACGGCATCTC+AGG 0.344618 6.2:-25642029 MS.gene019804:CDS
GGGTTAGGGTTTGGTGGTGA+AGG 0.352329 6.2:-25641976 MS.gene019804:CDS
GAGTCCATCGGGACAGCGTC+AGG 0.359931 6.2:+25642075 None:intergenic
GCTGGTAATCCTTCATTTAA+CGG 0.384795 6.2:-25637261 MS.gene019804:CDS
TTTGATGGGTTAGGGTTTGG+TGG 0.386396 6.2:-25641982 MS.gene019804:CDS
CTGGTAATCCTTCATTTAAC+GGG 0.387737 6.2:-25637260 MS.gene019804:CDS
AATCATTTGACTGCCGTTGC+TGG 0.392785 6.2:-25637279 MS.gene019804:CDS
GGTTAGGGTTTGGTGGTGAA+GGG 0.395694 6.2:-25641975 MS.gene019804:CDS
TGCACAACTTACAGTCCTTC+AGG 0.397567 6.2:-25640150 MS.gene019804:intron
CATGCCAGGTTGTGTCTGCT+GGG 0.398381 6.2:+25637182 None:intergenic
AGAAAGAACTTCAACGCCTT+AGG 0.400050 6.2:-25637311 MS.gene019804:CDS
CTGAGTGAGAACGGCGGTGG+TGG 0.401141 6.2:+25642187 None:intergenic
TCGTGGCCGCTCTAACTTCA+TGG 0.412681 6.2:-25637127 MS.gene019804:CDS
GTTAGGGTTTGGTGGTGAAG+GGG 0.427763 6.2:-25641974 MS.gene019804:CDS
ACAGCGTCAGGGGACGGAAG+AGG 0.437721 6.2:+25642087 None:intergenic
GGTTGTGTCTGCTGGGGTTG+AGG 0.447864 6.2:+25637189 None:intergenic
GAGATGGGGTTGTTTGAAGT+TGG 0.453490 6.2:-25641892 MS.gene019804:CDS
CAGCGTCAGGGGACGGAAGA+GGG 0.460154 6.2:+25642088 None:intergenic
GAACGAGAAGGCAGCATGCC+AGG 0.461441 6.2:+25637168 None:intergenic
GAAAGAACTTCAACGCCTTA+GGG 0.472203 6.2:-25637310 MS.gene019804:CDS
TCGATGGATGGGTCTGAGAT+GGG 0.474377 6.2:-25641907 MS.gene019804:CDS
AGAGCGGCCACGACCGTTGA+AGG 0.476611 6.2:+25637137 None:intergenic
TTCGATGGATGGGTCTGAGA+TGG 0.478441 6.2:-25641908 MS.gene019804:CDS
AGGGGACGGAAGAGGGAGGT+TGG 0.483008 6.2:+25642095 None:intergenic
AAGTCAATTATAACTGGTGG+TGG 0.495733 6.2:+25642237 None:intergenic
GTCCCCTGACGCTGTCCCGA+TGG 0.496675 6.2:-25642079 MS.gene019804:CDS
AGAGGAAGGTGAGTAGACAT+AGG 0.498750 6.2:-25641939 MS.gene019804:CDS
GGAGAAAGTTGAAGAGAGGA+AGG 0.499134 6.2:-25641953 MS.gene019804:CDS
ATCGAAGTCGGACGGGTCGA+AGG 0.500424 6.2:+25642122 None:intergenic
CGTCGAAGTTTGCTGCGAAA+CGG 0.501035 6.2:+25642154 None:intergenic
GAGAACATCCCGTTAAATGA+AGG 0.504928 6.2:+25637252 None:intergenic
GATCAACCCTTCAACGGTCG+TGG 0.512178 6.2:-25637144 MS.gene019804:CDS
CGGTGGTGGGTCCCACGTGA+TGG 0.512907 6.2:+25642201 None:intergenic
CAACCCCAGCAGACACAACC+TGG 0.516981 6.2:-25637186 MS.gene019804:CDS
AACTCGATATACAAGTGAGC+TGG 0.519563 6.2:-25640216 MS.gene019804:CDS
GGGTTGTTTGAAGTTGGTGA+TGG 0.524705 6.2:-25641886 MS.gene019804:CDS
ATCGGGACAGCGTCAGGGGA+CGG 0.525014 6.2:+25642081 None:intergenic
TGGACTCATCAGAGTCCATC+GGG 0.530528 6.2:+25642064 None:intergenic
CATCGGGAAGTCAGCGTCAG+AGG 0.531841 6.2:-25642043 MS.gene019804:CDS
AGGATTACTCATCTGTTGCA+TGG 0.537744 6.2:+25637209 None:intergenic
TGAGTGAGAACGGCGGTGGT+GGG 0.539319 6.2:+25642188 None:intergenic
AAGGGGAGAAAGTTGAAGAG+AGG 0.540706 6.2:-25641957 MS.gene019804:CDS
AGTTCAGCAAGTTTCTCAGC+CGG 0.541555 6.2:+25641847 None:intergenic
TGGACTCTGATGAGTCCATC+GGG 0.544487 6.2:-25642059 MS.gene019804:CDS
TGGTGGGTCCCACGTGATGG+TGG 0.546686 6.2:+25642204 None:intergenic
TGGAGATATCGAAGTCGGAC+GGG 0.546734 6.2:+25642115 None:intergenic
AAGCTTTGCTTGTTGCTCGA+AGG 0.549248 6.2:+25637865 None:intergenic
AGGTATAGTAGTTCGATGGA+TGG 0.550518 6.2:-25641919 MS.gene019804:CDS
CGTTCTGATCAACCCTTCAA+CGG 0.556715 6.2:-25637150 MS.gene019804:CDS
GTCCATCGGGACAGCGTCAG+GGG 0.557593 6.2:+25642077 None:intergenic
TCTAAGTCAATTATAACTGG+TGG 0.559887 6.2:+25642234 None:intergenic
AGTCCATCGGGACAGCGTCA+GGG 0.559909 6.2:+25642076 None:intergenic
ATCGGGAAGTCAGCGTCAGA+GGG 0.565138 6.2:-25642042 MS.gene019804:CDS
GGAAGTCAGCGTCAGAGGGA+CGG 0.567008 6.2:-25642038 MS.gene019804:CDS
GGTATAGTAGTTCGATGGAT+GGG 0.582990 6.2:-25641918 MS.gene019804:CDS
AGTCGGACGGGTCGAAGGTG+AGG 0.583026 6.2:+25642127 None:intergenic
ATGGACTCTGATGAGTCCAT+CGG 0.585619 6.2:-25642060 MS.gene019804:CDS
CTCTGACGCTGACTTCCCGA+TGG 0.585973 6.2:+25642044 None:intergenic
GCATCTCAGGAGTTTGTCTG+TGG 0.588489 6.2:-25642016 MS.gene019804:CDS
ATGGACTCATCAGAGTCCAT+CGG 0.588783 6.2:+25642063 None:intergenic
CTGCTGCACGATCGAAAGAG+AGG 0.598234 6.2:-25640241 MS.gene019804:CDS
GATATACAAGTGAGCTGGAG+AGG 0.598508 6.2:-25640211 MS.gene019804:CDS
AGGTGGTGTCTGAGTGAGAA+CGG 0.599071 6.2:+25642178 None:intergenic
GAGCGGCCACGACCGTTGAA+GGG 0.599201 6.2:+25637138 None:intergenic
ACATAGGTATAGTAGTTCGA+TGG 0.599361 6.2:-25641923 MS.gene019804:CDS
CGATGGATGGGTCTGAGATG+GGG 0.601831 6.2:-25641906 MS.gene019804:CDS
CAACAAGCAAAGCTTAGAGA+AGG 0.603588 6.2:-25637857 MS.gene019804:intron
TTGGAGATATCGAAGTCGGA+CGG 0.611978 6.2:+25642114 None:intergenic
CGTCAGGGGACGGAAGAGGG+AGG 0.618743 6.2:+25642091 None:intergenic
GAAAACATGCCACCATCACG+TGG 0.629605 6.2:-25642213 MS.gene019804:CDS
GAAGTTTGCTGCGAAACGGA+AGG 0.630495 6.2:+25642158 None:intergenic
GAGGTTGGAGATATCGAAGT+CGG 0.632312 6.2:+25642110 None:intergenic
AAATGAAGGATTACCAGCAA+CGG 0.634361 6.2:+25637266 None:intergenic
TGGTGTGAAGAAATCTATGC+CGG 0.640871 6.2:-25641866 MS.gene019804:CDS
TGTCTGAGTGAGAACGGCGG+TGG 0.649339 6.2:+25642184 None:intergenic
ATGCCAGGTTGTGTCTGCTG+GGG 0.655036 6.2:+25637183 None:intergenic
AAGGGTTGATCAGAACGAGA+AGG 0.660536 6.2:+25637156 None:intergenic
TGAAGTCCATGAAGTTAGAG+CGG 0.668699 6.2:+25637121 None:intergenic
GTTTGCTGCGAAACGGAAGG+TGG 0.671587 6.2:+25642161 None:intergenic
ATTCTGAGCAGTCAAATCAG+TGG 0.697438 6.2:+25637913 None:intergenic
GGACTGTAAGTTGTGCAGAG+AGG 0.716589 6.2:+25640156 None:intergenic
AAAACATGCCACCATCACGT+GGG 0.739972 6.2:-25642212 MS.gene019804:CDS
TGGTGTCTGAGTGAGAACGG+CGG 0.821224 6.2:+25642181 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAAAAAAAAAGATAAA+AGG - chr6.2:25639029-25639048 MS.gene019804:intron 10.0%
!! TGAAAAAAAAAAAGATAAAA+GGG - chr6.2:25639030-25639049 MS.gene019804:intron 10.0%
!! TTATTTATGTACTAAATTTA+AGG - chr6.2:25637654-25637673 MS.gene019804:intron 10.0%
!!! TTATTTTGTAATGTATAATT+TGG - chr6.2:25638671-25638690 MS.gene019804:intron 10.0%
!! AAAAAACATCTTAAAACAAA+GGG + chr6.2:25638725-25638744 None:intergenic 15.0%
!! GTAAACGTATATATAATTTA+CGG + chr6.2:25638351-25638370 None:intergenic 15.0%
!! TTTGAAAAAGACATATAAAT+AGG + chr6.2:25640775-25640794 None:intergenic 15.0%
!!! ACAAAATTTAGTAATTTTCT+TGG - chr6.2:25640886-25640905 MS.gene019804:intron 15.0%
!!! CATAAATTTGATTTTATTTC+TGG + chr6.2:25640553-25640572 None:intergenic 15.0%
!! AAAGACTTAAAAGATTTGTA+TGG + chr6.2:25639942-25639961 None:intergenic 20.0%
!! AAATTGTATGTGTTTATGAT+CGG - chr6.2:25637984-25638003 MS.gene019804:intron 20.0%
!! AACAAGATGATAAATAGTTT+AGG - chr6.2:25640835-25640854 MS.gene019804:intron 20.0%
!! AACCAATCATTATCAAAATT+AGG + chr6.2:25640069-25640088 None:intergenic 20.0%
!! AAGATACTGTGATTAATTTA+TGG + chr6.2:25640641-25640660 None:intergenic 20.0%
!! ATACATACAAATGTATAGTT+TGG - chr6.2:25639510-25639529 MS.gene019804:intron 20.0%
!! ATATAAGTTTAATGAGTATG+TGG - chr6.2:25637733-25637752 MS.gene019804:intron 20.0%
!! ATTACATAGAAGTAACTAAA+TGG + chr6.2:25640977-25640996 None:intergenic 20.0%
!! ATTCAATAAAGATGTGATAA+AGG + chr6.2:25641591-25641610 None:intergenic 20.0%
!! GAAAAAACATCTTAAAACAA+AGG + chr6.2:25638726-25638745 None:intergenic 20.0%
!! GACTAAAATTCTATATATGT+TGG + chr6.2:25638853-25638872 None:intergenic 20.0%
!! TAAATAGTTTAGGCTATTAT+AGG - chr6.2:25640845-25640864 MS.gene019804:intron 20.0%
!! TTACAGATTCAAAACATAAT+TGG - chr6.2:25641230-25641249 MS.gene019804:intron 20.0%
!! TTACCATTTAAATATGAACA+TGG - chr6.2:25642000-25642019 MS.gene019804:CDS 20.0%
!! TTATCACATCTTTATTGAAT+TGG - chr6.2:25641591-25641610 MS.gene019804:intron 20.0%
!! TTCAATAAAGATGTGATAAA+GGG + chr6.2:25641590-25641609 None:intergenic 20.0%
!!! AAAAAAAAACCTTTTTATCC+TGG + chr6.2:25640237-25640256 None:intergenic 20.0%
!!! CACTTTTTATAATCACTTTT+TGG - chr6.2:25637607-25637626 MS.gene019804:intron 20.0%
!!! CCATATCATATAAGATTTTT+CGG - chr6.2:25640439-25640458 MS.gene019804:intron 20.0%
!!! TTGTAGCATAGTTTTAAAAA+AGG + chr6.2:25641698-25641717 None:intergenic 20.0%
!!! TTTTCTAAGTCAATTATAAC+TGG + chr6.2:25637143-25637162 None:intergenic 20.0%
! AAAAATATCTGTCTTAAGGA+TGG + chr6.2:25641153-25641172 None:intergenic 25.0%
! AATGTTGTATGTTTGTTTAC+AGG - chr6.2:25639088-25639107 MS.gene019804:intron 25.0%
! ACTCAAAAATATCTGTCTTA+AGG + chr6.2:25641157-25641176 None:intergenic 25.0%
! ATCAAATTCACAAACACAAT+TGG + chr6.2:25638617-25638636 None:intergenic 25.0%
! ATCATAGATATTTGATGAGT+TGG + chr6.2:25641301-25641320 None:intergenic 25.0%
! ATCTACATCATTGTTAAAGA+TGG + chr6.2:25639348-25639367 None:intergenic 25.0%
! CAGTGAAAATTTGATCAAAA+CGG + chr6.2:25639992-25640011 None:intergenic 25.0%
! CCGAAAAATCTTATATGATA+TGG + chr6.2:25640442-25640461 None:intergenic 25.0%
! TAAAACTATGCTACAAAAGT+TGG - chr6.2:25641702-25641721 MS.gene019804:intron 25.0%
! TAGCCATGTTCATATTTAAA+TGG + chr6.2:25642006-25642025 None:intergenic 25.0%
! TATCAAGTGTTCTATGAAAT+GGG - chr6.2:25639965-25639984 MS.gene019804:intron 25.0%
! TCAATAAAGATGTGATAAAG+GGG + chr6.2:25641589-25641608 None:intergenic 25.0%
! TGTTAAATTGATTGTGTTTG+TGG - chr6.2:25638767-25638786 MS.gene019804:intron 25.0%
! TGTTTGGATTATGTAGAATT+TGG - chr6.2:25639053-25639072 MS.gene019804:intron 25.0%
! TTAATAAACCATCGTAAGTA+GGG + chr6.2:25638498-25638517 None:intergenic 25.0%
! TTCAAGCAATGATATTTCTT+TGG + chr6.2:25641938-25641957 None:intergenic 25.0%
! TTCAGTGTAATCATATGTAT+TGG + chr6.2:25639653-25639672 None:intergenic 25.0%
! TTTAATAAACCATCGTAAGT+AGG + chr6.2:25638499-25638518 None:intergenic 25.0%
! TTTCTTGATCCATAAAAAAG+TGG - chr6.2:25641553-25641572 MS.gene019804:intron 25.0%
!! ACTTCTCTTAAAGTTTTTCT+AGG + chr6.2:25638101-25638120 None:intergenic 25.0%
!! ATCGGATATTTTCAAAACTA+AGG + chr6.2:25641778-25641797 None:intergenic 25.0%
!! CTTTTTATATGCCAATTTTG+TGG - chr6.2:25640658-25640677 MS.gene019804:intron 25.0%
!! TATTGAATTGGACTAGAAAA+AGG - chr6.2:25641603-25641622 MS.gene019804:intron 25.0%
!! TCGGATATTTTCAAAACTAA+GGG + chr6.2:25641777-25641796 None:intergenic 25.0%
!! TTTTCAAAACGTAGAAAGTA+GGG + chr6.2:25640129-25640148 None:intergenic 25.0%
!! TTTTGCATCATTTACGATTT+TGG - chr6.2:25641750-25641769 MS.gene019804:intron 25.0%
!!! AAAAAAGATAAAAGGGTGTT+TGG - chr6.2:25639037-25639056 MS.gene019804:intron 25.0%
!!! ACAGATATTTTTGAGTAAAG+TGG - chr6.2:25641161-25641180 MS.gene019804:intron 25.0%
!!! ATCTTTTAGTTAGGAAAACA+TGG + chr6.2:25640349-25640368 None:intergenic 25.0%
!!! CATGTGATTTTTTGATAGAT+AGG - chr6.2:25641261-25641280 MS.gene019804:intron 25.0%
!!! GACCTAATTTTGATAATGAT+TGG - chr6.2:25640064-25640083 MS.gene019804:intron 25.0%
!!! GTTGCTTTTGTGATATAAAT+CGG - chr6.2:25641883-25641902 MS.gene019804:CDS 25.0%
AAAGGAAATAACATACCTGA+AGG + chr6.2:25639239-25639258 None:intergenic 30.0%
AATCTTATATGATATGGCGA+AGG + chr6.2:25640436-25640455 None:intergenic 30.0%
ACATCATTGTTAAAGATGGA+GGG + chr6.2:25639344-25639363 None:intergenic 30.0%
ACCAGAAATTCCATATGTAT+AGG + chr6.2:25638582-25638601 None:intergenic 30.0%
AGTCTCTAACTGAAGTTTAT+CGG - chr6.2:25638304-25638323 MS.gene019804:intron 30.0%
ATAGCTAAGTCAAGGAAAAT+AGG + chr6.2:25640283-25640302 None:intergenic 30.0%
ATCAAGTGTTCTATGAAATG+GGG - chr6.2:25639966-25639985 MS.gene019804:intron 30.0%
ATCCCTAAATACGTTAGATA+GGG + chr6.2:25641805-25641824 None:intergenic 30.0%
ATGATTGTATAGCTAAGTCA+AGG + chr6.2:25640291-25640310 None:intergenic 30.0%
ATTCTATATATGTTGGTCGT+AGG + chr6.2:25638846-25638865 None:intergenic 30.0%
CAATAAAGATGTGATAAAGG+GGG + chr6.2:25641588-25641607 None:intergenic 30.0%
CAATCATGCTTACGAAAAAT+CGG - chr6.2:25640304-25640323 MS.gene019804:intron 30.0%
CGATTCTAAGTTTAGAAGTT+TGG - chr6.2:25638541-25638560 MS.gene019804:intron 30.0%
CTATCAAGTGTTCTATGAAA+TGG - chr6.2:25639964-25639983 MS.gene019804:intron 30.0%
CTTAAAACGACAACTACAAA+GGG - chr6.2:25640922-25640941 MS.gene019804:intron 30.0%
GAAAAGTTCAGATGATATGT+AGG + chr6.2:25639813-25639832 None:intergenic 30.0%
GGAAGTTAATCCTATACATA+TGG - chr6.2:25638569-25638588 MS.gene019804:intron 30.0%
GGTTGTAACGCAAATTATAT+AGG + chr6.2:25639565-25639584 None:intergenic 30.0%
GTTAAGGAACATTGAGTTTA+GGG - chr6.2:25637874-25637893 MS.gene019804:CDS 30.0%
GTTACTTCTATGTAATACAG+TGG - chr6.2:25640981-25641000 MS.gene019804:intron 30.0%
TAAGTCAAGGAAAATAGGAT+TGG + chr6.2:25640278-25640297 None:intergenic 30.0%
TAATTTGACTCAGTTGGTTA+AGG - chr6.2:25637858-25637877 MS.gene019804:CDS 30.0%
TACATCATTGTTAAAGATGG+AGG + chr6.2:25639345-25639364 None:intergenic 30.0%
TACGTTAGATAGGGAAAAAT+CGG + chr6.2:25641796-25641815 None:intergenic 30.0%
TATGTAACAACTAACTGTAG+TGG - chr6.2:25640569-25640588 MS.gene019804:intron 30.0%
TCATCACAATACCACAAAAT+TGG + chr6.2:25640672-25640691 None:intergenic 30.0%
TCCTATACATATGGAATTTC+TGG - chr6.2:25638578-25638597 MS.gene019804:intron 30.0%
TCTAAGTCAATTATAACTGG+TGG + chr6.2:25637140-25637159 None:intergenic 30.0%
TGTCAAATTACTACAAGTAG+AGG - chr6.2:25638071-25638090 MS.gene019804:intron 30.0%
TGTTTGTAACATGTTCTTGT+TGG - chr6.2:25639306-25639325 MS.gene019804:intron 30.0%
TTAAAACGACAACTACAAAG+GGG - chr6.2:25640923-25640942 MS.gene019804:intron 30.0%
TTAACCATGACTCACAAATT+AGG + chr6.2:25638373-25638392 None:intergenic 30.0%
TTAAGTAGTCTCAGGTTTAA+TGG + chr6.2:25640029-25640048 None:intergenic 30.0%
TTCAGAACAGTGAAATGAAA+AGG + chr6.2:25639257-25639276 None:intergenic 30.0%
TTCCCTATCTAACGTATTTA+GGG - chr6.2:25641800-25641819 MS.gene019804:intron 30.0%
TTCTACTAAAGTGACGTAAA+AGG + chr6.2:25640739-25640758 None:intergenic 30.0%
TTTACAGGATTCTTGCTAAT+AGG - chr6.2:25639103-25639122 MS.gene019804:intron 30.0%
TTTCCCTATCTAACGTATTT+AGG - chr6.2:25641799-25641818 MS.gene019804:intron 30.0%
! AAGATTAGGGGTTTGAATTT+TGG - chr6.2:25638798-25638817 MS.gene019804:intron 30.0%
! AAGTTTAGAAGTTTGGAATC+TGG - chr6.2:25638548-25638567 MS.gene019804:intron 30.0%
! ACATTCCTCTTTTATCAAAG+GGG - chr6.2:25639844-25639863 MS.gene019804:intron 30.0%
! ACCATCTACGTAAAATTTTG+TGG + chr6.2:25640208-25640227 None:intergenic 30.0%
! CACATTCCTCTTTTATCAAA+GGG - chr6.2:25639843-25639862 MS.gene019804:intron 30.0%
! CTTTTCAAAACGTAGAAAGT+AGG + chr6.2:25640130-25640149 None:intergenic 30.0%
! GGATTAACCATCTGAAATAT+AGG + chr6.2:25638825-25638844 None:intergenic 30.0%
! GTAATCATATGTATTGGTGT+CGG + chr6.2:25639647-25639666 None:intergenic 30.0%
! TCACATTCCTCTTTTATCAA+AGG - chr6.2:25639842-25639861 MS.gene019804:intron 30.0%
! TCCACAAAATTTTACGTAGA+TGG - chr6.2:25640204-25640223 MS.gene019804:CDS 30.0%
! TTTACCTAATTTGTGAGTCA+TGG - chr6.2:25638366-25638385 MS.gene019804:intron 30.0%
! TTTTGGACCTATATTTCAGA+TGG - chr6.2:25638815-25638834 MS.gene019804:intron 30.0%
!! AGTTGGCTTAAATACAGTTT+TGG - chr6.2:25641719-25641738 MS.gene019804:intron 30.0%
!! TGTGGTTGATTCTAAGATTA+GGG - chr6.2:25638785-25638804 MS.gene019804:intron 30.0%
!! TTGTGGTTGATTCTAAGATT+AGG - chr6.2:25638784-25638803 MS.gene019804:intron 30.0%
!!! AAGCGAAATCCACTTTTTTA+TGG + chr6.2:25641565-25641584 None:intergenic 30.0%
!!! ATAAACCTTTTAGCTCTCTT+AGG + chr6.2:25637563-25637582 None:intergenic 30.0%
!!! GCAAAAGTGTTTTGCAAAAA+TGG + chr6.2:25641967-25641986 None:intergenic 30.0%
!!! GTGATTTTTTGATAGATAGG+TGG - chr6.2:25641264-25641283 MS.gene019804:intron 30.0%
!!! TGGATTCAGAGTTTTTTGAT+GGG - chr6.2:25637375-25637394 MS.gene019804:intron 30.0%
AAACACCCCTTTGATAAAAG+AGG + chr6.2:25639852-25639871 None:intergenic 35.0%
AAAGTGTGACATTGTCTAAG+TGG + chr6.2:25641856-25641875 None:intergenic 35.0%
AAATGAAGGATTACCAGCAA+CGG + chr6.2:25642108-25642127 None:intergenic 35.0%
AAGTCAATTATAACTGGTGG+TGG + chr6.2:25637137-25637156 None:intergenic 35.0%
ACATAGGTATAGTAGTTCGA+TGG - chr6.2:25637448-25637467 MS.gene019804:intron 35.0%
AGAGAGAAGATTGTGTAGTT+AGG - chr6.2:25638027-25638046 MS.gene019804:intron 35.0%
AGTCTCGTACTAAAGTTTCT+TGG - chr6.2:25638441-25638460 MS.gene019804:intron 35.0%
AGTTAGGAGAGTAAATCAGA+TGG - chr6.2:25638043-25638062 MS.gene019804:intron 35.0%
ATCTGTAATCCAACAAACCA+AGG + chr6.2:25641218-25641237 None:intergenic 35.0%
ATTTGTGAGTCATGGTTAAG+CGG - chr6.2:25638374-25638393 MS.gene019804:intron 35.0%
CATCCCTAAATACGTTAGAT+AGG + chr6.2:25641806-25641825 None:intergenic 35.0%
CCTACTTCAACGATGTAAAA+TGG + chr6.2:25640468-25640487 None:intergenic 35.0%
CCTTAAAACGACAACTACAA+AGG - chr6.2:25640921-25640940 MS.gene019804:intron 35.0%
CGTAAATGATGCAAAATAGC+AGG + chr6.2:25641746-25641765 None:intergenic 35.0%
CTGGTAATCCTTCATTTAAC+GGG - chr6.2:25642111-25642130 MS.gene019804:CDS 35.0%
CTGTACTCATAACTTTGAAC+TGG - chr6.2:25639779-25639798 MS.gene019804:intron 35.0%
GAGTAAAGTGGTAATTATCC+AGG - chr6.2:25641173-25641192 MS.gene019804:intron 35.0%
GCATATCCTTGGTATTATGT+GGG + chr6.2:25639418-25639437 None:intergenic 35.0%
GCTGGTAATCCTTCATTTAA+CGG - chr6.2:25642110-25642129 MS.gene019804:CDS 35.0%
GGTTAAGGAACATTGAGTTT+AGG - chr6.2:25637873-25637892 MS.gene019804:CDS 35.0%
GTCTCGTACTAAAGTTTCTT+GGG - chr6.2:25638442-25638461 MS.gene019804:intron 35.0%
GTCTCTAACTGAAGTTTATC+GGG - chr6.2:25638305-25638324 MS.gene019804:intron 35.0%
GTTTCAGATTAAGTAGTCTC+AGG + chr6.2:25640037-25640056 None:intergenic 35.0%
TAAAGAAACCATCGCGAATA+GGG + chr6.2:25637961-25637980 None:intergenic 35.0%
TATGCATGTTGCATGTGTAT+AGG - chr6.2:25639433-25639452 MS.gene019804:intron 35.0%
TCAAGGAAAATAGGATTGGA+TGG + chr6.2:25640274-25640293 None:intergenic 35.0%
TCACTAGTCAGAAAACTCAA+AGG + chr6.2:25641018-25641037 None:intergenic 35.0%
TCTGTAATCCAACAAACCAA+GGG + chr6.2:25641217-25641236 None:intergenic 35.0%
TGACTAGTGACTATGTTAGA+GGG - chr6.2:25641028-25641047 MS.gene019804:intron 35.0%
TGAGATTGTAGGATAAGACT+TGG - chr6.2:25637806-25637825 MS.gene019804:intron 35.0%
TGATTTGACTGCTCAGAATA+AGG - chr6.2:25641462-25641481 MS.gene019804:intron 35.0%
TGCATATCCTTGGTATTATG+TGG + chr6.2:25639419-25639438 None:intergenic 35.0%
TGGAAATACAAGCACGAAAT+TGG + chr6.2:25640188-25640207 None:intergenic 35.0%
TTAAAGAAACCATCGCGAAT+AGG + chr6.2:25637962-25637981 None:intergenic 35.0%
TTGATCCTAAGAGAGCTAAA+AGG - chr6.2:25637555-25637574 MS.gene019804:intron 35.0%
TTGTAACATGTTCTTGTTGG+TGG - chr6.2:25639309-25639328 MS.gene019804:intron 35.0%
TTTACATCGTTGAAGTAGGT+TGG - chr6.2:25640469-25640488 MS.gene019804:intron 35.0%
! AATTTTACGTAGATGGTCCT+AGG - chr6.2:25640211-25640230 MS.gene019804:CDS 35.0%
! AGATATTTGATGAGTTGGAG+TGG + chr6.2:25641296-25641315 None:intergenic 35.0%
! ATGTGTTTATGATCGGCTTA+GGG - chr6.2:25637991-25638010 MS.gene019804:intron 35.0%
! CCATTTTACATCGTTGAAGT+AGG - chr6.2:25640465-25640484 MS.gene019804:intron 35.0%
! GGTTTTCTTGTGAAGTTGTT+TGG + chr6.2:25637116-25637135 None:intergenic 35.0%
! GTGACTTAATTTGACTCAGT+TGG - chr6.2:25637852-25637871 MS.gene019804:intron 35.0%
! TATGTGTTTATGATCGGCTT+AGG - chr6.2:25637990-25638009 MS.gene019804:intron 35.0%
! TTTTCTGATCCATAATCCGA+TGG - chr6.2:25640496-25640515 MS.gene019804:intron 35.0%
!! ATGTTCTTGTTGGTGGTTTA+TGG - chr6.2:25639316-25639335 MS.gene019804:intron 35.0%
!! CTGCAGTACATCTTTTAGTT+AGG + chr6.2:25640358-25640377 None:intergenic 35.0%
!! GTGGTTGATTCTAAGATTAG+GGG - chr6.2:25638786-25638805 MS.gene019804:intron 35.0%
!!! CAGAGTTTTTTGATGGGTTA+GGG - chr6.2:25637381-25637400 MS.gene019804:intron 35.0%
!!! CCTTTGTAGTTGTCGTTTTA+AGG + chr6.2:25640924-25640943 None:intergenic 35.0%
!!! GTGGATTCAGAGTTTTTTGA+TGG - chr6.2:25637374-25637393 MS.gene019804:intron 35.0%
!!! TCAGAGTTTTTTGATGGGTT+AGG - chr6.2:25637380-25637399 MS.gene019804:intron 35.0%
!!! TTTTTTGATGGGTTAGGGTT+TGG - chr6.2:25637386-25637405 MS.gene019804:intron 35.0%
AACTCGATATACAAGTGAGC+TGG - chr6.2:25639155-25639174 MS.gene019804:intron 40.0%
AAGTGTAATCCCACTAAGTG+GGG + chr6.2:25638184-25638203 None:intergenic 40.0%
AAGTTTATCGGGATACTCTG+AGG - chr6.2:25638316-25638335 MS.gene019804:intron 40.0%
ACATGCAACATGCATATCCT+TGG + chr6.2:25639429-25639448 None:intergenic 40.0%
AGAAAGAACTTCAACGCCTT+AGG - chr6.2:25642060-25642079 MS.gene019804:CDS 40.0%
AGGAGAGTAAATCAGATGGA+GGG - chr6.2:25638047-25638066 MS.gene019804:intron 40.0%
AGGATTACTCATCTGTTGCA+TGG + chr6.2:25642165-25642184 None:intergenic 40.0%
AGGGCTTTCTTCCATAATAC+TGG - chr6.2:25641047-25641066 MS.gene019804:intron 40.0%
AGGTATAGTAGTTCGATGGA+TGG - chr6.2:25637452-25637471 MS.gene019804:intron 40.0%
AGTACAGTGTCCAAATGCAA+GGG + chr6.2:25639766-25639785 None:intergenic 40.0%
ATGGAACCCACATAATACCA+AGG - chr6.2:25639409-25639428 MS.gene019804:intron 40.0%
ATGTACTTTACCCCACTTAG+TGG - chr6.2:25638171-25638190 MS.gene019804:intron 40.0%
ATTCTGAGCAGTCAAATCAG+TGG + chr6.2:25641461-25641480 None:intergenic 40.0%
CAACAAGCAAAGCTTAGAGA+AGG - chr6.2:25641514-25641533 MS.gene019804:intron 40.0%
CAAGTGTAATCCCACTAAGT+GGG + chr6.2:25638185-25638204 None:intergenic 40.0%
CATGTGTATAGGTACTAGGT+AGG - chr6.2:25639444-25639463 MS.gene019804:intron 40.0%
CGAAGGCTCGACTTATAATT+AGG + chr6.2:25640419-25640438 None:intergenic 40.0%
CTGACTAGTGACTATGTTAG+AGG - chr6.2:25641027-25641046 MS.gene019804:intron 40.0%
CTGTAATCCAACAAACCAAG+GGG + chr6.2:25641216-25641235 None:intergenic 40.0%
GAAAGAACTTCAACGCCTTA+GGG - chr6.2:25642061-25642080 MS.gene019804:CDS 40.0%
GAGAACATCCCGTTAAATGA+AGG + chr6.2:25642122-25642141 None:intergenic 40.0%
GATTCTTTGTGTATTCCGTC+TGG - chr6.2:25640712-25640731 MS.gene019804:intron 40.0%
GGGCTTTCTTCCATAATACT+GGG - chr6.2:25641048-25641067 MS.gene019804:intron 40.0%
GGTATAGTAGTTCGATGGAT+GGG - chr6.2:25637453-25637472 MS.gene019804:intron 40.0%
GTCAAATACCCTACTTACGA+TGG - chr6.2:25638487-25638506 MS.gene019804:intron 40.0%
GTTGCATGTGTATAGGTACT+AGG - chr6.2:25639440-25639459 MS.gene019804:intron 40.0%
TAGGAGAGTAAATCAGATGG+AGG - chr6.2:25638046-25638065 MS.gene019804:intron 40.0%
TCAAGTGTAATCCCACTAAG+TGG + chr6.2:25638186-25638205 None:intergenic 40.0%
TCCATAATACTGGGAGAGAT+TGG - chr6.2:25641057-25641076 MS.gene019804:intron 40.0%
TGAAGTCCATGAAGTTAGAG+CGG + chr6.2:25642253-25642272 None:intergenic 40.0%
TGGTGTGAAGAAATCTATGC+CGG - chr6.2:25637505-25637524 MS.gene019804:intron 40.0%
TGTACTTTACCCCACTTAGT+GGG - chr6.2:25638172-25638191 MS.gene019804:intron 40.0%
TGTGCGGTCATAACTGTTTA+TGG - chr6.2:25639390-25639409 MS.gene019804:intron 40.0%
! AAACCTTTTTATCCTGGCCT+AGG + chr6.2:25640231-25640250 None:intergenic 40.0%
! AATGATTCTTTTGCGCCCTA+AGG + chr6.2:25642079-25642098 None:intergenic 40.0%
! AGGAACATTGAGTTTAGGGT+CGG - chr6.2:25637878-25637897 MS.gene019804:CDS 40.0%
! ATTTGATGAGTTGGAGTGGT+TGG + chr6.2:25641292-25641311 None:intergenic 40.0%
! TTAAGCGGTGTTGAGTTTGT+GGG - chr6.2:25638389-25638408 MS.gene019804:intron 40.0%
! TTTGATGAGTTGGAGTGGTT+GGG + chr6.2:25641291-25641310 None:intergenic 40.0%
!!! CTGTCTGATTTTGAGTTGTG+CGG - chr6.2:25639374-25639393 MS.gene019804:intron 40.0%
AAAACATGCCACCATCACGT+GGG - chr6.2:25637159-25637178 MS.gene019804:CDS 45.0%
AACCTATGAAGCACAGACAC+AGG + chr6.2:25639732-25639751 None:intergenic 45.0%
AAGGGGAGAAAGTTGAAGAG+AGG - chr6.2:25637414-25637433 MS.gene019804:intron 45.0%
AATCATTTGACTGCCGTTGC+TGG - chr6.2:25642092-25642111 MS.gene019804:CDS 45.0%
ACAATCTCACGTCAGCTACA+TGG + chr6.2:25637795-25637814 None:intergenic 45.0%
ACTACAAAGGGGAGCAATGT+CGG - chr6.2:25640934-25640953 MS.gene019804:intron 45.0%
AGAGGAAGGTGAGTAGACAT+AGG - chr6.2:25637432-25637451 MS.gene019804:intron 45.0%
AGTGACGTAAAAGGACCAGA+CGG + chr6.2:25640730-25640749 None:intergenic 45.0%
AGTTCAGCAAGTTTCTCAGC+CGG + chr6.2:25637527-25637546 None:intergenic 45.0%
ATGGACTCATCAGAGTCCAT+CGG + chr6.2:25637311-25637330 None:intergenic 45.0%
ATGGACTCTGATGAGTCCAT+CGG - chr6.2:25637311-25637330 MS.gene019804:CDS 45.0%
CGTTCTGATCAACCCTTCAA+CGG - chr6.2:25642221-25642240 MS.gene019804:CDS 45.0%
GAGCAATGTCGGAATTCTCA+AGG - chr6.2:25640945-25640964 MS.gene019804:intron 45.0%
GAGGTTGGAGATATCGAAGT+CGG + chr6.2:25637264-25637283 None:intergenic 45.0%
GAGTACAGTGTCCAAATGCA+AGG + chr6.2:25639767-25639786 None:intergenic 45.0%
GATATACAAGTGAGCTGGAG+AGG - chr6.2:25639160-25639179 MS.gene019804:intron 45.0%
GCCAATCTCTCCCAGTATTA+TGG + chr6.2:25641061-25641080 None:intergenic 45.0%
GGAGAAAGTTGAAGAGAGGA+AGG - chr6.2:25637418-25637437 MS.gene019804:intron 45.0%
GGATACTATGACGAGCATCT+GGG - chr6.2:25638463-25638482 MS.gene019804:intron 45.0%
GTTAAGCGACACTCAGTTTG+TGG - chr6.2:25638244-25638263 MS.gene019804:intron 45.0%
TCCTGTTGTCGAACATGTGT+CGG - chr6.2:25639618-25639637 MS.gene019804:intron 45.0%
TGAAATTAACAGCGTGCGAG+AGG + chr6.2:25641361-25641380 None:intergenic 45.0%
TGCACAACTTACAGTCCTTC+AGG - chr6.2:25639221-25639240 MS.gene019804:intron 45.0%
TGTAGCCAATCTCTGTGACT+CGG - chr6.2:25638218-25638237 MS.gene019804:intron 45.0%
TGTAGCTGACGTGAGATTGT+AGG - chr6.2:25637795-25637814 MS.gene019804:intron 45.0%
TTGGAGATATCGAAGTCGGA+CGG + chr6.2:25637260-25637279 None:intergenic 45.0%
! AACATTGAGTTTAGGGTCGG+GGG - chr6.2:25637881-25637900 MS.gene019804:CDS 45.0%
! AAGCTTTGCTTGTTGCTCGA+AGG + chr6.2:25641509-25641528 None:intergenic 45.0%
! AAGGGTTGATCAGAACGAGA+AGG + chr6.2:25642218-25642237 None:intergenic 45.0%
! GAACATTGAGTTTAGGGTCG+GGG - chr6.2:25637880-25637899 MS.gene019804:CDS 45.0%
! GAGATGGGGTTGTTTGAAGT+TGG - chr6.2:25637479-25637498 MS.gene019804:intron 45.0%
! GGAACATTGAGTTTAGGGTC+GGG - chr6.2:25637879-25637898 MS.gene019804:CDS 45.0%
! GTTAAGCGGTGTTGAGTTTG+TGG - chr6.2:25638388-25638407 MS.gene019804:intron 45.0%
!! AAAGGAGTGCCATCGGATTA+TGG + chr6.2:25640508-25640527 None:intergenic 45.0%
!! GGGTTGTTTGAAGTTGGTGA+TGG - chr6.2:25637485-25637504 MS.gene019804:intron 45.0%
!! TTTGATGGGTTAGGGTTTGG+TGG - chr6.2:25637389-25637408 MS.gene019804:intron 45.0%
AACAAACCAAGGGGACCATG+TGG + chr6.2:25641207-25641226 None:intergenic 50.0%
AAGCGACACTCAGTTTGTGG+TGG - chr6.2:25638247-25638266 MS.gene019804:intron 50.0%
ACAAACCAAGGGGACCATGT+GGG + chr6.2:25641206-25641225 None:intergenic 50.0%
ACCAACCGAGTCACAGAGAT+TGG + chr6.2:25638226-25638245 None:intergenic 50.0%
ACCATCGCGAATAGGGTCTT+TGG + chr6.2:25637954-25637973 None:intergenic 50.0%
ACCGACACATGTTCGACAAC+AGG + chr6.2:25639622-25639641 None:intergenic 50.0%
AGCGACACTCAGTTTGTGGT+GGG - chr6.2:25638248-25638267 MS.gene019804:intron 50.0%
AGGTGGTGTCTGAGTGAGAA+CGG + chr6.2:25637196-25637215 None:intergenic 50.0%
ATCCAGGCATTCAACCCACA+TGG - chr6.2:25641189-25641208 MS.gene019804:intron 50.0%
ATGAAGCACGAACACTCCTC+AGG - chr6.2:25639586-25639605 MS.gene019804:intron 50.0%
CTACACGCTTCCCTTGCATT+TGG - chr6.2:25639753-25639772 MS.gene019804:intron 50.0%
GAAAACATGCCACCATCACG+TGG - chr6.2:25637158-25637177 MS.gene019804:CDS 50.0%
GCATCTCAGGAGTTTGTCTG+TGG - chr6.2:25637355-25637374 MS.gene019804:intron 50.0%
GGACTGTAAGTTGTGCAGAG+AGG + chr6.2:25639218-25639237 None:intergenic 50.0%
GGGATACTATGACGAGCATC+TGG - chr6.2:25638462-25638481 MS.gene019804:intron 50.0%
GGTCCTAGGCCAGGATAAAA+AGG - chr6.2:25640225-25640244 MS.gene019804:CDS 50.0%
GTCCTGTGTCTGTGCTTCAT+AGG - chr6.2:25639727-25639746 MS.gene019804:intron 50.0%
TGGACTCATCAGAGTCCATC+GGG + chr6.2:25637310-25637329 None:intergenic 50.0%
TGGACTCTGATGAGTCCATC+GGG - chr6.2:25637312-25637331 MS.gene019804:CDS 50.0%
TGGAGATATCGAAGTCGGAC+GGG + chr6.2:25637259-25637278 None:intergenic 50.0%
TTCGATGGATGGGTCTGAGA+TGG - chr6.2:25637463-25637482 MS.gene019804:intron 50.0%
TTGAGTTTGTGGGAGGACTG+AGG - chr6.2:25638399-25638418 MS.gene019804:intron 50.0%
! TCGATGGATGGGTCTGAGAT+GGG - chr6.2:25637464-25637483 MS.gene019804:intron 50.0%
!! ACATGGTCCCCTTGGTTTGT+TGG - chr6.2:25641206-25641225 MS.gene019804:intron 50.0%
!! ACCATGGAAAGGAGTGCCAT+CGG + chr6.2:25640515-25640534 None:intergenic 50.0%
!! CGTCGAAGTTTGCTGCGAAA+CGG + chr6.2:25637220-25637239 None:intergenic 50.0%
!! CTAACTGTAGTGGACGCTAC+TGG - chr6.2:25640579-25640598 MS.gene019804:intron 50.0%
!! GAAGTTTGCTGCGAAACGGA+AGG + chr6.2:25637216-25637235 None:intergenic 50.0%
!! GAGGAGTGTTCGTGCTTCAT+AGG + chr6.2:25639586-25639605 None:intergenic 50.0%
!! GGTTAGGGTTTGGTGGTGAA+GGG - chr6.2:25637396-25637415 MS.gene019804:intron 50.0%
!! GTTAGGGTTTGGTGGTGAAG+GGG - chr6.2:25637397-25637416 MS.gene019804:intron 50.0%
AACAGGACACGCCTAACCTG+AGG + chr6.2:25639605-25639624 None:intergenic 55.0%
ATCGGGAAGTCAGCGTCAGA+GGG - chr6.2:25637329-25637348 MS.gene019804:CDS 55.0%
ATGCCAGGTTGTGTCTGCTG+GGG + chr6.2:25642191-25642210 None:intergenic 55.0%
CACTCCTTTCCATGGTGCAG+CGG - chr6.2:25640519-25640538 MS.gene019804:intron 55.0%
CATGCCAGGTTGTGTCTGCT+GGG + chr6.2:25642192-25642211 None:intergenic 55.0%
CGACACTCAGTTTGTGGTGG+GGG - chr6.2:25638250-25638269 MS.gene019804:intron 55.0%
CTGCTGCACGATCGAAAGAG+AGG - chr6.2:25639130-25639149 MS.gene019804:intron 55.0%
GATCAACCCTTCAACGGTCG+TGG - chr6.2:25642227-25642246 MS.gene019804:CDS 55.0%
GCACGAACACTCCTCAGGTT+AGG - chr6.2:25639591-25639610 MS.gene019804:intron 55.0%
GCCAAAGACCCTATTCGCGA+TGG - chr6.2:25637950-25637969 MS.gene019804:intron 55.0%
GCGACACTCAGTTTGTGGTG+GGG - chr6.2:25638249-25638268 MS.gene019804:intron 55.0%
TACGTAGATGGTCCTAGGCC+AGG - chr6.2:25640216-25640235 MS.gene019804:CDS 55.0%
TCCGATGGCACTCCTTTCCA+TGG - chr6.2:25640511-25640530 MS.gene019804:intron 55.0%
TCGTGGCCGCTCTAACTTCA+TGG - chr6.2:25642244-25642263 MS.gene019804:CDS 55.0%
TGGTGTCTGAGTGAGAACGG+CGG + chr6.2:25637193-25637212 None:intergenic 55.0%
TTCAACCCACATGGTCCCCT+TGG - chr6.2:25641198-25641217 MS.gene019804:intron 55.0%
! AGCGGTGTTGAGTTTGTGGG+AGG - chr6.2:25638392-25638411 MS.gene019804:intron 55.0%
! ATTGAGTTTAGGGTCGGGGG+AGG - chr6.2:25637884-25637903 MS.gene019804:CDS 55.0%
! CGATGGATGGGTCTGAGATG+GGG - chr6.2:25637465-25637484 MS.gene019804:intron 55.0%
! GACCATGTGGGTTGAATGCC+TGG + chr6.2:25641194-25641213 None:intergenic 55.0%
! GTTTGCTGCGAAACGGAAGG+TGG + chr6.2:25637213-25637232 None:intergenic 55.0%
! TTGAGTTTAGGGTCGGGGGA+GGG - chr6.2:25637885-25637904 MS.gene019804:CDS 55.0%
!! GCCAATCTCTGTGACTCGGT+TGG - chr6.2:25638222-25638241 MS.gene019804:intron 55.0%
!! GGGTTAGGGTTTGGTGGTGA+AGG - chr6.2:25637395-25637414 MS.gene019804:intron 55.0%
!! GGTTTGTTGGGGGTGCTCTA+AGG - chr6.2:25637916-25637935 MS.gene019804:CDS 55.0%
AGTCCATCGGGACAGCGTCA+GGG + chr6.2:25637298-25637317 None:intergenic 60.0%
ATCGAAGTCGGACGGGTCGA+AGG + chr6.2:25637252-25637271 None:intergenic 60.0%
CAACCCCAGCAGACACAACC+TGG - chr6.2:25642185-25642204 MS.gene019804:CDS 60.0%
CATCGGGAAGTCAGCGTCAG+AGG - chr6.2:25637328-25637347 MS.gene019804:CDS 60.0%
CATGCCGCTGCACCATGGAA+AGG + chr6.2:25640526-25640545 None:intergenic 60.0%
GAACGAGAAGGCAGCATGCC+AGG + chr6.2:25642206-25642225 None:intergenic 60.0%
GCATGCCAGGTTGTGTCTGC+TGG + chr6.2:25642193-25642212 None:intergenic 60.0%
GGAAGTCAGCGTCAGAGGGA+CGG - chr6.2:25637333-25637352 MS.gene019804:intron 60.0%
GGTTGTGTCTGCTGGGGTTG+AGG + chr6.2:25642185-25642204 None:intergenic 60.0%
TGAGTGAGAACGGCGGTGGT+GGG + chr6.2:25637186-25637205 None:intergenic 60.0%
TGTCTGAGTGAGAACGGCGG+TGG + chr6.2:25637190-25637209 None:intergenic 60.0%
! CACTCAGTTTGTGGTGGGGG+AGG - chr6.2:25638253-25638272 MS.gene019804:intron 60.0%
! TGAGTTTAGGGTCGGGGGAG+GGG - chr6.2:25637886-25637905 MS.gene019804:CDS 60.0%
! TTTGTGGTGGGGGAGGACTG+AGG - chr6.2:25638260-25638279 MS.gene019804:intron 60.0%
!! AGGGGGCGCTGAGGTTTGTT+GGG - chr6.2:25637904-25637923 MS.gene019804:CDS 60.0%
!! CTCTGACGCTGACTTCCCGA+TGG + chr6.2:25637330-25637349 None:intergenic 60.0%
ACAGCGTCAGGGGACGGAAG+AGG + chr6.2:25637287-25637306 None:intergenic 65.0%
AGAGCGGCCACGACCGTTGA+AGG + chr6.2:25642237-25642256 None:intergenic 65.0%
AGGGGACGGAAGAGGGAGGT+TGG + chr6.2:25637279-25637298 None:intergenic 65.0%
AGTCGGACGGGTCGAAGGTG+AGG + chr6.2:25637247-25637266 None:intergenic 65.0%
ATCGGGACAGCGTCAGGGGA+CGG + chr6.2:25637293-25637312 None:intergenic 65.0%
CAGCGTCAGGGGACGGAAGA+GGG + chr6.2:25637286-25637305 None:intergenic 65.0%
CGTCAGAGGGACGGCATCTC+AGG - chr6.2:25637342-25637361 MS.gene019804:intron 65.0%
CTGAGTGAGAACGGCGGTGG+TGG + chr6.2:25637187-25637206 None:intergenic 65.0%
GAGCGGCCACGACCGTTGAA+GGG + chr6.2:25642236-25642255 None:intergenic 65.0%
GAGTCCATCGGGACAGCGTC+AGG + chr6.2:25637299-25637318 None:intergenic 65.0%
GCACTCATGCCGCTGCACCA+TGG + chr6.2:25640531-25640550 None:intergenic 65.0%
GTCCATCGGGACAGCGTCAG+GGG + chr6.2:25637297-25637316 None:intergenic 65.0%
! GAGTTTAGGGTCGGGGGAGG+GGG - chr6.2:25637887-25637906 MS.gene019804:CDS 65.0%
! TGGTGGGTCCCACGTGATGG+TGG + chr6.2:25637170-25637189 None:intergenic 65.0%
!! GAGGGGGCGCTGAGGTTTGT+TGG - chr6.2:25637903-25637922 MS.gene019804:CDS 65.0%
!! GGGGCGCTGAGGTTTGTTGG+GGG - chr6.2:25637906-25637925 MS.gene019804:CDS 65.0%
!! GGGGGCGCTGAGGTTTGTTG+GGG - chr6.2:25637905-25637924 MS.gene019804:CDS 65.0%
!! GGGGTGCTCTAAGGCGTGTC+TGG - chr6.2:25637925-25637944 MS.gene019804:intron 65.0%
CGTCAGGGGACGGAAGAGGG+AGG + chr6.2:25637283-25637302 None:intergenic 70.0%
GTCCCCTGACGCTGTCCCGA+TGG - chr6.2:25637292-25637311 MS.gene019804:CDS 70.0%
!! CGGTGGTGGGTCCCACGTGA+TGG + chr6.2:25637173-25637192 None:intergenic 70.0%
!!! GGTCGGGGGAGGGGGCGCTG+AGG - chr6.2:25637895-25637914 MS.gene019804:CDS 85.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 25637107 25642286 25637107 ID=MS.gene019804
chr6.2 mRNA 25637107 25642286 25637107 ID=MS.gene019804.t1;Parent=MS.gene019804
chr6.2 exon 25641817 25642286 25641817 ID=MS.gene019804.t1.exon1;Parent=MS.gene019804.t1
chr6.2 CDS 25641817 25642286 25641817 ID=cds.MS.gene019804.t1;Parent=MS.gene019804.t1
chr6.2 exon 25640151 25640283 25640151 ID=MS.gene019804.t1.exon2;Parent=MS.gene019804.t1
chr6.2 CDS 25640151 25640283 25640151 ID=cds.MS.gene019804.t1;Parent=MS.gene019804.t1
chr6.2 exon 25637858 25637942 25637858 ID=MS.gene019804.t1.exon3;Parent=MS.gene019804.t1
chr6.2 CDS 25637858 25637942 25637858 ID=cds.MS.gene019804.t1;Parent=MS.gene019804.t1
chr6.2 exon 25637107 25637351 25637107 ID=MS.gene019804.t1.exon4;Parent=MS.gene019804.t1
chr6.2 CDS 25637107 25637351 25637107 ID=cds.MS.gene019804.t1;Parent=MS.gene019804.t1
Gene Sequence

>MS.gene019804

ATGGAACCAAACAACTTCACAAGAAAACCACCACCAGTTATAATTGACTTAGAAAACATGCCACCATCACGTGGGACCCACCACCGCCGTTCTCACTCAGACACCACCTTCCGTTTCGCAGCAAACTTCGACGATCTCCTCACCTTCGACCCGTCCGACTTCGATATCTCCAACCTCCCTCTTCCGTCCCCTGACGCTGTCCCGATGGACTCTGATGAGTCCATCGGGAAGTCAGCGTCAGAGGGACGGCATCTCAGGAGTTTGTCTGTGGATTCAGAGTTTTTTGATGGGTTAGGGTTTGGTGGTGAAGGGGAGAAAGTTGAAGAGAGGAAGGTGAGTAGACATAGGTATAGTAGTTCGATGGATGGGTCTGAGATGGGGTTGTTTGAAGTTGGTGATGGTGTGAAGAAATCTATGCCGGCTGAGAAACTTGCTGAACTTGCTCTTATTGATCCTAAGAGAGCTAAAAGGTTTATAATCATCTTCATCACAAGCAAAATCACTTTTTATAATCACTTTTTGGAGTTTGTTTTGAAAGAAATTAATTTTATTTATGTACTAAATTTAAGGTTCTTGTTTTTCTTTTTATGAAAAAAAAATTAATATTTAGTTTTTAATTAGAGTCTATATAAGTTTAATGAGTATGTGGTATGATATATGATAGAATATTATAGCGTTGTTTGATCCATGTAGCTGACGTGAGATTGTAGGATAAGACTTGGTTGTTGTTGTTTGTTCAATTTGTGTGACTTAATTTGACTCAGTTGGTTAAGGAACATTGAGTTTAGGGTCGGGGGAGGGGGCGCTGAGGTTTGTTGGGGGTGCTCTAAGGCGTGTCTGGTTGCCAAAGACCCTATTCGCGATGGTTTCTTTAAAAAAATTGTATGTGTTTATGATCGGCTTAGGGAGTTTGAGTATGTAGAGAGAAGATTGTGTAGTTAGGAGAGTAAATCAGATGGAGGGTTGTCAAATTACTACAAGTAGAGGAAGACCTAGAAAAACTTTAAGAGAAGTTATTAAGAAAGATTTAGAGATTGATAGAACTTTATGACGTTGTTTGATGCATGTACTTTACCCCACTTAGTGGGATTACACTTGATTATTGTTGTTATGTAGCCAATCTCTGTGACTCGGTTGGTTAAGCGACACTCAGTTTGTGGTGGGGGAGGACTGAGGTTTGAACTCAGTAGAGAGATTAGTCTCTAACTGAAGTTTATCGGGATACTCTGAGGAGCATAATACCGTAAATTATATATACGTTTACCTAATTTGTGAGTCATGGTTAAGCGGTGTTGAGTTTGTGGGAGGACTGAGGTTTGATCTCAGAAGAGATTAGTCTCGTACTAAAGTTTCTTGGGATACTATGACGAGCATCTGGGTGTCAAATACCCTACTTACGATGGTTTATTAAAACAAAATTAATGTATTTATGATCGATTCTAAGTTTAGAAGTTTGGAATCTGGAAGTTAATCCTATACATATGGAATTTCTGGTCAATGAGTAAAACCAATTGTGTTTGTGAATTTGATCTTGTCATAGATTTGTTTTAGTTTTTTATGTCTTTTATTTTGTAATGTATAATTTGGAACACAATTAGATTAAAATTTGTTTTTACCCTTTGTTTTAAGATGTTTTTTCTTCACAAAAAGATCATGTTCGTGTTAAATTGATTGTGTTTGTGGTTGATTCTAAGATTAGGGGTTTGAATTTTGGACCTATATTTCAGATGGTTAATCCTACGACCAACATATATAGAATTTTAGTCAAAGACTAAAAACAATTGTGTTTGTGTGTCTGATCTTATCAGAAATTTGAATTTTAGTTTAGTGTTTTATTTTGTAATTGATGATTGTAATGAATTGTTTCTGTTGATGATAACATGTTTTCTAATTATATGATGTAACATGAGTTTTTCTGAATAATGAAAAAAAAAAAGATAAAAGGGTGTTTGGATTATGTAGAATTTGGCTTGATGCTTAAAATGTTGTATGTTTGTTTACAGGATTCTTGCTAATAGGCAATCTGCTGCACGATCGAAAGAGAGGAAAACTCGATATACAAGTGAGCTGGAGAGGAAAGTGCAGACGCTTCAAACTGAAGCAACTAACCTCTCTGCACAACTTACAGTCCTTCAGGTATGTTATTTCCTTTTCATTTCACTGTTCTGAATTGTAGCTTTCAATGAATAGATGTGAATTTGTTTGTAACATGTTCTTGTTGGTGGTTTATGGAGCCCTCCATCTTTAACAATGATGTAGATTTATTTCTGTCTGATTTTGAGTTGTGCGGTCATAACTGTTTATGGAACCCACATAATACCAAGGATATGCATGTTGCATGTGTATAGGTACTAGGTAGGTATTTATGTTCACATATACATACATACATACATACATACATACATACATACAAATGTATAGTTTGGTGAAATTAAATTTAATTACTCTATTACATCCTATATAATTTGCGTTACAACCTATGAAGCACGAACACTCCTCAGGTTAGGCGTGTCCTGTTGTCGAACATGTGTCGGTGTCCGACACCAATACATATGATTACACTGAATTATGTCATTTTCTTAAATTATTATCAGTGTCGATGCGTCAGTGTACGTGTCGTGTCCTGTGTCTGTGCTTCATAGGTTACTACACGCTTCCCTTGCATTTGGACACTGTACTCATAACTTTGAACTGGCTTTGAAGCCTACATATCATCTGAACTTTTCTATAAATTTTCACATTCCTCTTTTATCAAAGGGGTGTTTATTTAAAAATTTTAAAAAGTTGCGATCTCTGTAATTTTACGCTTGAATTTTTTTCTGTTATCGATTACCATACAAATCTTTTAAGTCTTTTTCTATCAAGTGTTCTATGAAATGGGGCCGTTTTGATCAAATTTTCACTGATTCTGATTGTGAACCATTAAACCTGAGACTACTTAATCTGAAACAATTATTGACCTAATTTTGATAATGATTGGTTTAGTTCGTTATTCACTACTAGTGTCATTAAACATCTTCCCTACTTTCTACGTTTTGAAAAGTAATTTCACTATAAGCAGCTCTTTTGTGAGCTCTGCCAATTTCGTGCTTGTATTTCCACAAAATTTTACGTAGATGGTCCTAGGCCAGGATAAAAAGGTTTTTTTTTTTCTTTTCTAAAGTCCATCCAATCCTATTTTCCTTGACTTAGCTATACAATCATGCTTACGAAAAATCGGTTTTTGATGCTGTCACTGTCCATGTTTTCCTAACTAAAAGATGTACTGCAGTTTGTCATACAGTCTGCAGTGATCTAATTATTTTCATGCCTAATTATAAGTCGAGCCTTCGCCATATCATATAAGATTTTTCGGAAACCATTTTACATCGTTGAAGTAGGTTGGTTTATTTTCTGATCCATAATCCGATGGCACTCCTTTCCATGGTGCAGCGGCATGAGTGCCAGAAATAAAATCAAATTTATGTAACAACTAACTGTAGTGGACGCTACTGGATGCATATCTTCGCATAGATAGATGACATGATTGCTCCATAAATTAATCACAGTATCTTTTTATATGCCAATTTTGTGGTATTGTGATGACTGATGAGTGAAGATGACAAGATTCTTTGTGTATTCCGTCTGGTCCTTTTACGTCACTTTAGTAGAATAATAATTTTGTTCCTATTTATATGTCTTTTTCAAAGTTCATTACAACACTCACTATTATTTTGTCAAAAAAGTGAAACAAGATGATAAATAGTTTAGGCTATTATAGGAAAAAGACAAATAATTCAACAAAATTTAGTAATTTTCTTGGTATGTTAAATGACCTTAAAACGACAACTACAAAGGGGAGCAATGTCGGAATTCTCAAGGATTATTCCATTTAGTTACTTCTATGTAATACAGTGGTCTTCTTAGTTCCTTTGAGTTTTCTGACTAGTGACTATGTTAGAGGGCTTTCTTCCATAATACTGGGAGAGATTGGCATGCATTGTTCTATAATATTAGATTCACGATTTTGAAAATAGATGTTGCGATTCTCGATTTGATATTAACCATCCTTAAGACAGATATTTTTGAGTAAAGTGGTAATTATCCAGGCATTCAACCCACATGGTCCCCTTGGTTTGTTGGATTACAGATTCAAAACATAATTGGTGACTTTTCATGTGATTTTTTGATAGATAGGTGGTCCCAACCACTCCAACTCATCAAATATCTATGATCTAAATTTTTACTGACTGAATTAATTTAAATGTTATGCCTCTCGCACGCTGTTAATTTCAATTTGTGTAAACTTAAGAAATGTGCAAAAGAATAAAAAGGAAGCAAACTAATCATTGAATCATGATGCAGAGAGACACCACTGATTTGACTGCTCAGAATAAGGAGCTCAAAATGAAGTTAGATGCCTTCGAGCAACAAGCAAAGCTTAGAGAAGGTATGTATCGTTTCATATTTCTTGATCCATAAAAAAGTGGATTTCGCTTCCCCCTTTATCACATCTTTATTGAATTGGACTAGAAAAAGGCTGAATCTTTCATTTGTTTGTTGTGCGAAAAAAGATCTTGTGAATCTTCATTAATATCTATCAATTTTACCTTTTTTAAAACTATGCTACAAAAGTTGGCTTAAATACAGTTTTGGTCCTGCTATTTTGCATCATTTACGATTTTGGACCCTTAGTTTTGAAAATATCCGATTTTTCCCTATCTAACGTATTTAGGGATGCTTTTATAAGCGAGATTAAATGCGAATCCACTTAGACAATGTCACACTTTAAATTTAGTTGCTTTTGTGATATAAATCGGTGTATATTTTGATGACATGAAGATTAATTCCAAAGAAATATCATTGCTTGAAATTTGACCATTTTTGCAAAACACTTTTGCTTGTTATCAAGTTTTACCATTTAAATATGAACATGGCTACACTTTGTGATTGCAGATCTCAATGAAGCATTGAAGAAAGAACTTCAACGCCTTAGGGCGCAAAAGAATCATTTGACTGCCGTTGCTGGTAATCCTTCATTTAACGGGATGTTCTCGCAATTTGCTACACAATTAACCATGCAACAGATGAGTAATCCTCAACCCCAGCAGACACAACCTGGCATGCTGCCTTCTCGTTCTGATCAACCCTTCAACGGTCGTGGCCGCTCTAACTTCATGGACTTCAATTACCAGAAGTAA
Protein sequence

>MS.gene019804.t1

MEPNNFTRKPPPVIIDLENMPPSRGTHHRRSHSDTTFRFAANFDDLLTFDPSDFDISNLPLPSPDAVPMDSDESIGKSASEGRHLRSLSVDSEFFDGLGFGGEGEKVEERKVSRHRYSSSMDGSEMGLFEVGDGVKKSMPAEKLAELALIDPKRAKRILANRQSAARSKERKTRYTSELERKVQTLQTEATNLSAQLTVLQRDTTDLTAQNKELKMKLDAFEQQAKLREDLNEALKKELQRLRAQKNHLTAVAGNPSFNGMFSQFATQLTMQQMSNPQPQQTQPGMLPSRSDQPFNGRGRSNFMDFNYQK