AlfalfaGEDB | MS.gene019964

M. sativa cultivar XinJiangDaYe / MS.gene019964

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019964.t1	RHN82037.1	88.9	126	14	0	1	126	364	489	1.60E-60	241.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019964.t1	Q39202	39.7	121	64	1	2	122	698	809	6.8e-23	108.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019964.t1	A0A072W0U2	88.9	126	14	0	1	126	549	674	1.2e-60	241.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019964.t1	MTR_1g104555	88.889	126	14	0	1	126	549	674	1.04e-75	237
MS.gene019964.t1	MTR_5g006160	54.839	124	46	2	1	124	657	770	1.41e-40	143
MS.gene019964.t1	MTR_2g067970	43.802	121	63	3	2	122	771	886	5.56e-30	113
MS.gene019964.t1	MTR_5g013070	42.149	121	66	2	2	122	678	794	5.38e-29	110
MS.gene019964.t1	MTR_2g067990	44.628	121	62	2	2	122	883	998	6.59e-29	110
MS.gene019964.t1	MTR_2g067980	44.628	121	62	2	2	122	907	1022	1.16e-28	109
MS.gene019964.t1	MTR_5g013130	41.322	121	67	2	2	122	675	791	8.78e-28	107
MS.gene019964.t1	MTR_2g068650	42.975	121	64	2	2	122	621	736	1.16e-26	103
MS.gene019964.t1	MTR_8g011370	42.149	121	66	1	2	122	688	804	8.98e-26	101
MS.gene019964.t1	MTR_8g011410	41.880	117	64	1	2	118	690	802	3.92e-23	93.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019964.t1	AT4G32300	36.290	124	68	3	2	122	659	774	5.54e-18	79.0
MS.gene019964.t1	AT1G34300	36.290	124	67	3	2	121	650	765	1.99e-17	77.4
MS.gene019964.t1	AT1G34210	33.043	115	73	1	1	115	472	582	2.40e-16	74.3
MS.gene019964.t1	AT1G34210	33.043	115	73	1	1	115	472	582	2.40e-16	74.3
MS.gene019964.t1	AT4G33430	33.913	115	72	1	1	115	456	566	4.01e-16	73.6
MS.gene019964.t1	AT5G03140	34.959	123	79	1	1	123	537	658	4.32e-16	73.6
MS.gene019964.t1	AT1G60800	30.435	115	75	1	1	115	401	510	4.67e-16	73.6
MS.gene019964.t1	AT1G60800	30.435	115	75	1	1	115	468	577	4.74e-16	73.6
MS.gene019964.t1	AT1G71830	32.174	115	74	1	1	115	469	579	5.98e-16	73.2
MS.gene019964.t1	AT4G33430	33.913	115	72	1	1	115	503	613	6.14e-16	73.2

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Find 25 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGATATCTACAGCTT+TGG	0.451824	6.1:+12699295	MS.gene019964:CDS
AAGGTGCTGCAGATGTCGGA+AGG	0.614948	6.1:+12699565	MS.gene019964:CDS
AAGTTGTTAATGATTTCATT+AGG	0.396201	6.1:+12699473	MS.gene019964:CDS
AGTGTTCCACCATTGTTTGA+TGG	0.394571	6.1:+12699601	MS.gene019964:CDS
ATGACATGATACTTATAGAT+TGG	0.369608	6.1:+12699395	MS.gene019964:CDS
CAAGTTGAAGATGGAACAGA+AGG	0.575586	6.1:+12699367	MS.gene019964:CDS
CATTAACAACTTCAACATCA+TGG	0.537170	6.1:-12699462	None:intergenic
GAATGACTATGGTTGGACTG+TGG	0.741878	6.1:+12699503	MS.gene019964:CDS
GAGTTGCATCAAGTTGAAGA+TGG	0.493345	6.1:+12699358	MS.gene019964:CDS
GCAATAGATGGCCTAATAAT+TGG	0.179313	6.1:-12699541	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGGATATCTACAGCTT+TGG	+	chr6.1:12699295-12699314	MS.gene019964:CDS	30.0%
CATTAACAACTTCAACATCA+TGG	-	chr6.1:12699465-12699484	None:intergenic	30.0%
TGTGCTCTAATCCAATTATT+AGG	+	chr6.1:12699530-12699549	MS.gene019964:CDS	30.0%
GCAATAGATGGCCTAATAAT+TGG	-	chr6.1:12699544-12699563	None:intergenic	35.0%
GTTCTATATTGGGCAAAAGA+GGG	+	chr6.1:12699418-12699437	MS.gene019964:CDS	35.0%
TAGGTTTGAGAGAATGACTA+TGG	+	chr6.1:12699492-12699511	MS.gene019964:CDS	35.0%
TATTAGGCCATCTATTGCAA+AGG	+	chr6.1:12699546-12699565	MS.gene019964:CDS	35.0%
TTCTATATTGGGCAAAAGAG+GGG	+	chr6.1:12699419-12699438	MS.gene019964:CDS	35.0%
TTTGAGAGAATGACTATGGT+TGG	+	chr6.1:12699496-12699515	MS.gene019964:CDS	35.0%
AGTGTTCCACCATTGTTTGA+TGG	+	chr6.1:12699601-12699620	MS.gene019964:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	12699247	12699636	12699247	ID=MS.gene019964
chr6.1	mRNA	12699247	12699636	12699247	ID=MS.gene019964.t1;Parent=MS.gene019964
chr6.1	exon	12699247	12699636	12699247	ID=MS.gene019964.t1.exon1;Parent=MS.gene019964.t1
chr6.1	CDS	12699247	12699636	12699247	ID=cds.MS.gene019964.t1;Parent=MS.gene019964.t1

Gene Sequence

>MS.gene019964

ATGGGATGTTTGGCACCAGAATGGCTCAAAAATGCACCTATCACTGCAAAAATGGATATCTACAGCTTTGGTGTCATGTTGCTTGAAATCTTATTTTGTAGAAGGCACATTGAGTTGCATCAAGTTGAAGATGGAACAGAAGGTGGTGATGACATGATACTTATAGATTGGGTTCTATATTGGGCAAAAGAGGGGAAACTGAGAGACATTCTTAGCCATGATGTTGAAGTTGTTAATGATTTCATTAGGTTTGAGAGAATGACTATGGTTGGACTGTGGTGCTTGTGCTCTAATCCAATTATTAGGCCATCTATTGCAAAGGTGCTGCAGATGTCGGAAGGAGATTTTGAAGTTAGTGTTCCACCATTGTTTGATGGAAAAATTTTGTAA

Protein sequence

>MS.gene019964.t1

MGCLAPEWLKNAPITAKMDIYSFGVMLLEILFCRRHIELHQVEDGTEGGDDMILIDWVLYWAKEGKLRDILSHDVEVVNDFIRFERMTMVGLWCLCSNPIIRPSIAKVLQMSEGDFEVSVPPLFDGKIL