AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene019964

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019964.t1 MTR_1g104555 88.889 126 14 0 1 126 549 674 1.04e-75 237
MS.gene019964.t1 MTR_5g006160 54.839 124 46 2 1 124 657 770 1.41e-40 143
MS.gene019964.t1 MTR_2g067970 43.802 121 63 3 2 122 771 886 5.56e-30 113
MS.gene019964.t1 MTR_5g013070 42.149 121 66 2 2 122 678 794 5.38e-29 110
MS.gene019964.t1 MTR_2g067990 44.628 121 62 2 2 122 883 998 6.59e-29 110
MS.gene019964.t1 MTR_2g067980 44.628 121 62 2 2 122 907 1022 1.16e-28 109
MS.gene019964.t1 MTR_5g013130 41.322 121 67 2 2 122 675 791 8.78e-28 107
MS.gene019964.t1 MTR_2g068650 42.975 121 64 2 2 122 621 736 1.16e-26 103
MS.gene019964.t1 MTR_8g011370 42.149 121 66 1 2 122 688 804 8.98e-26 101
MS.gene019964.t1 MTR_8g011410 41.880 117 64 1 2 118 690 802 3.92e-23 93.6
MS.gene019964.t1 MTR_4g114270 34.677 124 73 3 2 125 691 806 5.76e-22 90.5
MS.gene019964.t1 MTR_4g114280 38.333 120 68 3 4 122 720 834 1.26e-20 86.7
MS.gene019964.t1 MTR_8g011440 38.333 120 70 1 2 121 702 817 1.70e-20 86.3
MS.gene019964.t1 MTR_4g114250 33.884 121 72 3 2 122 693 805 1.08e-18 80.9
MS.gene019964.t1 MTR_4g114240 40.000 120 66 3 4 122 706 820 1.79e-18 80.5
MS.gene019964.t1 MTR_3g107070 35.537 121 72 1 2 122 639 753 2.45e-18 80.1
MS.gene019964.t1 MTR_6g043790 38.710 124 65 4 2 122 661 776 2.77e-18 79.7
MS.gene019964.t1 MTR_2g073250 36.066 122 71 2 2 122 651 766 3.34e-18 79.7
MS.gene019964.t1 MTR_6g043510 37.500 128 67 4 2 124 656 775 3.36e-18 79.7
MS.gene019964.t1 MTR_2g080100 37.190 121 67 3 4 122 618 731 2.00e-17 77.4
MS.gene019964.t1 MTR_8g067690 35.200 125 70 4 1 123 521 636 2.66e-17 77.0
MS.gene019964.t1 MTR_8g067720 34.400 125 71 4 1 123 504 619 9.45e-17 75.5
MS.gene019964.t1 MTR_7g063010 34.167 120 69 3 1 118 504 615 1.42e-16 75.1
MS.gene019964.t1 MTR_2g080080 35.246 122 72 2 2 122 647 762 1.87e-16 74.7
MS.gene019964.t1 MTR_8g030500 29.365 126 85 1 1 122 648 773 2.41e-16 74.3
MS.gene019964.t1 MTR_4g113710 38.583 127 68 4 2 122 274 396 2.96e-16 73.9
MS.gene019964.t1 MTR_7g116130 33.333 111 68 1 1 111 521 625 4.38e-16 73.6
MS.gene019964.t1 MTR_8g067630 33.600 125 72 4 1 123 453 568 5.51e-16 73.2
MS.gene019964.t1 MTR_6g083780 36.000 125 69 5 1 122 519 635 7.67e-16 72.8
MS.gene019964.t1 MTR_2g008370 33.913 115 71 1 1 115 456 565 1.02e-15 72.4
MS.gene019964.t1 MTR_1g099400 29.839 124 79 2 2 123 689 806 1.24e-15 72.4
MS.gene019964.t1 MTR_1g012550 32.231 121 76 1 2 122 667 781 1.63e-15 72.0
MS.gene019964.t1 MTR_5g077100 35.246 122 78 1 1 122 533 653 1.71e-15 72.0
MS.gene019964.t1 MTR_2g103810 33.884 121 74 1 2 122 659 773 1.95e-15 71.6
MS.gene019964.t1 MTR_7g063030 32.500 120 71 3 1 118 502 613 1.99e-15 71.6
MS.gene019964.t1 MTR_7g063030 32.500 120 71 3 1 118 508 619 1.99e-15 71.6
MS.gene019964.t1 MTR_1g032930 33.600 125 75 3 2 121 664 785 2.41e-15 71.6
MS.gene019964.t1 MTR_1g097160 32.174 115 74 1 1 115 471 581 3.71e-15 70.9
MS.gene019964.t1 MTR_2g008360 31.304 115 75 1 1 115 460 570 3.85e-15 70.9
MS.gene019964.t1 MTR_2g089360 34.815 135 57 5 2 123 661 777 3.86e-15 70.9
MS.gene019964.t1 MTR_1g029610 32.231 121 75 1 2 122 459 572 4.27e-15 70.9
MS.gene019964.t1 MTR_2g054870 34.146 123 79 1 2 122 276 398 4.55e-15 70.5
MS.gene019964.t1 MTR_2g008390 30.435 115 76 1 1 115 461 571 4.81e-15 70.5
MS.gene019964.t1 MTR_8g088760 34.959 123 72 3 2 121 456 573 6.31e-15 70.1
MS.gene019964.t1 MTR_2g036460 35.772 123 71 3 2 123 310 425 6.90e-15 70.1
MS.gene019964.t1 MTR_2g036490 33.333 132 62 3 2 123 300 415 8.02e-15 69.7
MS.gene019964.t1 MTR_5g033820 30.435 115 75 1 1 115 469 578 8.28e-15 70.1
MS.gene019964.t1 MTR_8g067930 33.871 124 71 4 2 123 506 620 8.65e-15 69.7
MS.gene019964.t1 MTR_3g087060 31.304 115 75 1 1 115 442 552 1.16e-14 69.3
MS.gene019964.t1 MTR_3g087060 31.304 115 75 1 1 115 453 563 1.25e-14 69.3
MS.gene019964.t1 MTR_2g089440 31.579 133 64 4 2 123 434 550 1.29e-14 69.3
MS.gene019964.t1 MTR_2g089440 31.579 133 64 4 2 123 666 782 1.34e-14 69.3
MS.gene019964.t1 MTR_1g028020 34.400 125 72 5 1 122 313 430 1.35e-14 69.3
MS.gene019964.t1 MTR_2g073540 33.613 119 69 4 2 118 593 703 1.82e-14 68.9
MS.gene019964.t1 MTR_2g073520 33.613 119 69 4 2 118 699 809 1.84e-14 68.9
MS.gene019964.t1 MTR_7g018200 32.174 115 73 1 1 115 469 578 2.29e-14 68.6
MS.gene019964.t1 MTR_3g031610 34.188 117 67 3 2 111 675 788 2.47e-14 68.6
MS.gene019964.t1 MTR_8g095030 32.456 114 72 2 1 114 440 548 2.66e-14 68.6
MS.gene019964.t1 MTR_4g094858 31.667 120 71 3 2 115 678 792 2.91e-14 68.6
MS.gene019964.t1 MTR_0280s0040 32.787 122 77 2 2 123 659 775 3.58e-14 68.2
MS.gene019964.t1 MTR_8g445800 32.773 119 73 2 1 119 667 778 5.29e-14 67.8
MS.gene019964.t1 MTR_8g445800 32.773 119 73 2 1 119 720 831 5.32e-14 67.8
MS.gene019964.t1 MTR_8g445800 32.773 119 73 2 1 119 865 976 5.38e-14 67.8
MS.gene019964.t1 MTR_1g028100 32.800 125 74 5 1 122 255 372 6.11e-14 67.4
MS.gene019964.t1 MTR_1g027320 33.607 122 65 5 1 117 168 278 7.84e-14 66.6
MS.gene019964.t1 MTR_3g460810 36.036 111 64 1 1 111 492 595 8.67e-14 67.0
MS.gene019964.t1 MTR_3g102400 31.034 116 74 2 2 111 684 799 1.36e-13 66.6
MS.gene019964.t1 MTR_7g115740 33.333 123 74 4 1 123 448 562 1.59e-13 66.2
MS.gene019964.t1 MTR_1g028170 33.600 125 73 5 1 122 282 399 1.61e-13 66.2
MS.gene019964.t1 MTR_7g115740 33.333 123 74 4 1 123 524 638 1.62e-13 66.2
MS.gene019964.t1 MTR_3g031510 34.188 117 67 3 2 111 230 343 1.71e-13 65.9
MS.gene019964.t1 MTR_3g031600 32.479 117 69 3 2 111 678 791 1.82e-13 66.2
MS.gene019964.t1 MTR_2g006910 34.375 128 72 3 2 122 483 605 1.94e-13 65.9
MS.gene019964.t1 MTR_2g006910 34.375 128 72 3 2 122 483 605 1.94e-13 65.9
MS.gene019964.t1 MTR_8g068050 33.333 123 74 2 1 123 410 524 2.31e-13 65.9
MS.gene019964.t1 MTR_8g068050 33.333 123 74 2 1 123 520 634 2.37e-13 65.9
MS.gene019964.t1 MTR_7g082430 31.496 127 73 6 1 122 481 598 2.91e-13 65.5
MS.gene019964.t1 MTR_7g082110 32.308 130 68 7 1 122 702 819 2.94e-13 65.5
MS.gene019964.t1 MTR_7g082300 32.540 126 73 6 1 122 716 833 3.03e-13 65.5
MS.gene019964.t1 MTR_2g008380 30.435 115 76 1 1 115 452 562 3.09e-13 65.5
MS.gene019964.t1 MTR_8g088780 35.433 127 69 4 2 122 487 606 3.13e-13 65.5
MS.gene019964.t1 MTR_7g082280 32.353 136 76 7 1 128 593 720 5.38e-13 64.7
MS.gene019964.t1 MTR_3g096555 32.203 118 74 2 2 119 470 581 5.79e-13 64.7
MS.gene019964.t1 MTR_3g096555 30.508 118 76 2 2 119 512 623 5.83e-13 64.7
MS.gene019964.t1 MTR_8g461110 29.661 118 76 2 1 118 853 963 6.61e-13 64.7
MS.gene019964.t1 MTR_1g027050 32.000 125 75 6 1 122 601 718 7.09e-13 64.3
MS.gene019964.t1 MTR_4g093040 33.607 122 73 2 2 123 526 639 7.55e-13 64.3
MS.gene019964.t1 MTR_7g085860 32.283 127 71 6 1 122 331 447 8.94e-13 63.9
MS.gene019964.t1 MTR_5g033690 29.851 134 79 5 1 125 476 603 9.67e-13 63.9
MS.gene019964.t1 MTR_1g027140 32.000 125 75 6 1 122 598 715 1.11e-12 63.9
MS.gene019964.t1 MTR_0049s0070 29.565 115 76 1 1 115 401 510 1.13e-12 63.9
MS.gene019964.t1 MTR_0049s0070 29.565 115 76 1 1 115 464 573 1.15e-12 63.9
MS.gene019964.t1 MTR_8g090140 29.565 115 77 1 1 115 450 560 1.26e-12 63.5
MS.gene019964.t1 MTR_2g016500 28.226 124 80 2 1 122 465 581 1.26e-12 63.5
MS.gene019964.t1 MTR_4g093040 33.607 122 73 2 2 123 444 557 1.38e-12 63.5
MS.gene019964.t1 MTR_5g026510 29.134 127 77 3 1 124 469 585 1.41e-12 63.5
MS.gene019964.t1 MTR_7g082470 32.283 127 73 6 1 122 500 618 1.41e-12 63.5
MS.gene019964.t1 MTR_2g073630 31.852 135 77 5 2 129 795 921 1.44e-12 63.5
MS.gene019964.t1 MTR_6g016495 30.435 115 75 1 1 115 467 576 1.53e-12 63.5
MS.gene019964.t1 MTR_1g028280 34.884 129 65 7 1 122 500 616 1.57e-12 63.5
MS.gene019964.t1 MTR_1g028280 34.884 129 65 7 1 122 539 655 1.78e-12 63.2
MS.gene019964.t1 MTR_7g082510 31.200 125 76 4 1 122 512 629 2.15e-12 63.2
MS.gene019964.t1 MTR_7g058550 32.456 114 70 3 2 111 675 785 2.15e-12 63.2
MS.gene019964.t1 MTR_7g058530 28.448 116 72 2 2 111 676 786 2.41e-12 62.8
MS.gene019964.t1 MTR_5g035910 30.833 120 73 3 1 118 511 622 3.00e-12 62.8
MS.gene019964.t1 MTR_7g082400 33.071 127 72 6 1 122 250 368 4.90e-12 62.0
MS.gene019964.t1 MTR_2g075010 32.174 115 68 3 2 114 821 927 4.99e-12 62.0
MS.gene019964.t1 MTR_5g095970 34.677 124 69 4 1 121 525 639 5.56e-12 62.0
MS.gene019964.t1 MTR_1g027820 31.624 117 71 3 1 115 423 532 5.76e-12 61.6
MS.gene019964.t1 MTR_2g074990 31.304 115 69 3 2 114 819 925 6.10e-12 61.6
MS.gene019964.t1 MTR_2g073600 32.773 119 70 4 2 118 829 939 6.91e-12 61.6
MS.gene019964.t1 MTR_2g073560 32.773 119 70 4 2 118 805 915 6.93e-12 61.6
MS.gene019964.t1 MTR_1g027540 31.250 128 71 7 1 122 270 386 7.26e-12 61.2
MS.gene019964.t1 MTR_1g110260 30.645 124 76 5 2 122 401 517 7.37e-12 61.6
MS.gene019964.t1 MTR_8g058250 30.233 129 80 3 1 127 734 854 9.65e-12 61.2
MS.gene019964.t1 MTR_8g058250 30.233 129 80 3 1 127 830 950 9.73e-12 61.2
MS.gene019964.t1 MTR_2g074820 31.200 125 73 4 2 124 303 416 1.21e-11 60.8
MS.gene019964.t1 MTR_2g073640 30.400 125 74 4 2 124 836 949 1.57e-11 60.5
MS.gene019964.t1 MTR_1g063910 29.457 129 79 3 1 123 264 386 1.57e-11 60.5
MS.gene019964.t1 MTR_2g036440 33.333 129 68 4 2 125 242 357 1.59e-11 60.5
MS.gene019964.t1 MTR_1g027160 30.469 128 72 7 1 122 168 284 1.60e-11 60.5
MS.gene019964.t1 MTR_8g104520 29.365 126 80 4 1 122 510 630 1.61e-11 60.5
MS.gene019964.t1 MTR_1g063910 29.457 129 79 3 1 123 273 395 1.67e-11 60.5
MS.gene019964.t1 MTR_1g028290 30.400 125 76 5 1 122 455 571 1.73e-11 60.5
MS.gene019964.t1 MTR_1g027460 30.469 128 72 6 1 122 195 311 1.76e-11 60.1
MS.gene019964.t1 MTR_7g082490 30.952 126 75 6 1 122 277 394 1.79e-11 60.5
MS.gene019964.t1 MTR_7g082380 29.921 127 76 6 1 122 227 345 1.92e-11 60.1
MS.gene019964.t1 MTR_4g044393 28.676 136 80 7 1 128 700 826 1.98e-11 60.5
MS.gene019964.t1 MTR_8g101670 31.624 117 70 4 1 115 569 677 2.12e-11 60.1
MS.gene019964.t1 MTR_0394s0020 28.676 136 80 7 1 128 240 366 2.18e-11 60.1
MS.gene019964.t1 MTR_1g027930 30.400 125 76 6 1 122 138 254 2.53e-11 59.7
MS.gene019964.t1 MTR_2g074840 31.304 115 69 3 2 114 830 936 2.82e-11 59.7
MS.gene019964.t1 MTR_6g082860 31.200 125 75 5 1 122 226 342 3.05e-11 59.7
MS.gene019964.t1 MTR_4g107620 32.520 123 76 2 2 124 481 596 3.25e-11 59.7
MS.gene019964.t1 MTR_2g008400 29.167 120 77 2 1 115 462 578 3.31e-11 59.7
MS.gene019964.t1 MTR_2g075250 30.081 123 76 3 1 121 737 851 3.43e-11 59.7
MS.gene019964.t1 MTR_2g075250 30.081 123 76 3 1 121 832 946 3.46e-11 59.7
MS.gene019964.t1 MTR_1g027420 30.952 126 73 5 1 122 413 528 3.54e-11 59.7
MS.gene019964.t1 MTR_1g027030 31.746 126 74 6 1 122 550 667 4.35e-11 59.3
MS.gene019964.t1 MTR_1g027030 31.746 126 74 6 1 122 600 717 4.38e-11 59.3
MS.gene019964.t1 MTR_8g057660 32.174 115 64 3 2 114 213 315 4.41e-11 58.9
MS.gene019964.t1 MTR_2g073650 31.200 125 73 4 2 124 829 942 4.81e-11 59.3
MS.gene019964.t1 MTR_7g058860 32.174 115 69 2 2 111 678 788 4.99e-11 59.3
MS.gene019964.t1 MTR_1g089600 28.676 136 81 5 1 128 465 592 5.08e-11 58.9
MS.gene019964.t1 MTR_8g059605 31.092 119 72 3 2 118 632 742 5.14e-11 58.9
MS.gene019964.t1 MTR_4g067230 31.538 130 82 2 1 129 687 810 5.15e-11 58.9
MS.gene019964.t1 MTR_4g093070 30.400 125 76 4 1 123 513 628 5.24e-11 58.9
MS.gene019964.t1 MTR_8g059605 31.092 119 72 3 2 118 827 937 5.24e-11 58.9
MS.gene019964.t1 MTR_3g007870 31.148 122 76 2 1 121 512 626 5.29e-11 58.9
MS.gene019964.t1 MTR_1g027440 31.200 125 62 5 1 122 446 549 5.64e-11 58.9
MS.gene019964.t1 MTR_7g058830 29.825 114 71 2 2 110 679 788 7.28e-11 58.5
MS.gene019964.t1 MTR_1g027840 29.600 125 77 6 1 122 194 310 7.81e-11 58.5
MS.gene019964.t1 MTR_6g082830 30.400 125 76 5 1 122 170 286 7.90e-11 58.2
MS.gene019964.t1 MTR_1g110140 28.226 124 79 4 2 122 223 339 8.47e-11 58.2
MS.gene019964.t1 MTR_7g101800 30.000 120 77 2 1 119 261 374 9.43e-11 58.2
MS.gene019964.t1 MTR_7g101800 30.000 120 77 2 1 119 269 382 9.47e-11 58.2
MS.gene019964.t1 MTR_7g101800 30.000 120 77 2 1 119 281 394 9.52e-11 58.2
MS.gene019964.t1 MTR_5g083910 30.252 119 73 3 2 118 695 805 9.62e-11 58.2
MS.gene019964.t1 MTR_1g026940 32.540 126 70 4 1 122 469 583 9.63e-11 58.2
MS.gene019964.t1 MTR_5g083910 30.252 119 73 3 2 118 827 937 9.73e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene019964.t1 AT4G32300 36.290 124 68 3 2 122 659 774 5.54e-18 79.0
MS.gene019964.t1 AT1G34300 36.290 124 67 3 2 121 650 765 1.99e-17 77.4
MS.gene019964.t1 AT1G34210 33.043 115 73 1 1 115 472 582 2.40e-16 74.3
MS.gene019964.t1 AT1G34210 33.043 115 73 1 1 115 472 582 2.40e-16 74.3
MS.gene019964.t1 AT4G33430 33.913 115 72 1 1 115 456 566 4.01e-16 73.6
MS.gene019964.t1 AT5G03140 34.959 123 79 1 1 123 537 658 4.32e-16 73.6
MS.gene019964.t1 AT1G60800 30.435 115 75 1 1 115 401 510 4.67e-16 73.6
MS.gene019964.t1 AT1G60800 30.435 115 75 1 1 115 468 577 4.74e-16 73.6
MS.gene019964.t1 AT1G71830 32.174 115 74 1 1 115 469 579 5.98e-16 73.2
MS.gene019964.t1 AT4G33430 33.913 115 72 1 1 115 503 613 6.14e-16 73.2
MS.gene019964.t1 AT3G25560 33.913 115 71 1 1 115 475 584 1.36e-15 72.4
MS.gene019964.t1 AT3G25560 33.913 115 71 1 1 115 476 585 1.37e-15 72.4
MS.gene019964.t1 AT3G25560 33.913 115 71 1 1 115 475 584 1.37e-15 72.4
MS.gene019964.t1 AT2G19130 33.077 130 67 4 2 123 660 777 1.40e-15 72.4
MS.gene019964.t1 AT1G70250 28.800 125 83 3 1 122 624 745 4.03e-15 70.9
MS.gene019964.t1 AT1G29730 31.356 118 76 1 1 118 805 917 7.92e-15 70.1
MS.gene019964.t1 AT1G29730 31.356 118 76 1 1 118 837 949 7.94e-15 70.1
MS.gene019964.t1 AT5G24080 30.081 123 79 2 2 123 570 686 8.85e-15 70.1
MS.gene019964.t1 AT5G24080 30.081 123 79 2 2 123 570 686 8.85e-15 70.1
MS.gene019964.t1 AT5G24080 30.081 123 79 2 2 123 697 813 8.99e-15 70.1
MS.gene019964.t1 AT4G02420 32.456 114 72 1 2 115 516 624 9.36e-15 69.7
MS.gene019964.t1 AT2G13800 31.304 115 75 1 1 115 325 435 1.26e-14 69.3
MS.gene019964.t1 AT2G13800 31.304 115 75 1 1 115 325 435 1.26e-14 69.3
MS.gene019964.t1 AT2G13800 31.304 115 75 1 1 115 442 552 1.53e-14 69.3
MS.gene019964.t1 AT2G13800 31.304 115 75 1 1 115 442 552 1.53e-14 69.3
MS.gene019964.t1 AT2G13790 31.304 115 75 1 1 115 461 571 1.58e-14 69.3
MS.gene019964.t1 AT5G65240 33.333 117 70 3 1 115 451 561 1.79e-14 68.9
MS.gene019964.t1 AT5G65240 33.333 117 70 3 1 115 451 561 2.04e-14 68.9
MS.gene019964.t1 AT4G00340 36.066 122 62 5 2 114 626 740 3.11e-14 68.6
MS.gene019964.t1 AT4G00340 36.066 122 62 5 2 114 647 761 3.21e-14 68.2
MS.gene019964.t1 AT3G59740 31.579 114 72 1 1 114 502 609 3.26e-14 68.2
MS.gene019964.t1 AT1G11050 35.878 131 70 4 2 125 467 590 5.01e-14 67.8
MS.gene019964.t1 AT1G29740 32.432 111 70 1 1 111 841 946 5.62e-14 67.8
MS.gene019964.t1 AT1G29740 32.432 111 70 1 1 111 841 946 5.65e-14 67.8
MS.gene019964.t1 AT3G53380 34.426 122 80 0 1 122 540 661 7.21e-14 67.4
MS.gene019964.t1 AT3G53810 34.127 126 71 4 1 123 512 628 7.67e-14 67.4
MS.gene019964.t1 AT4G02410 33.333 114 71 1 2 115 521 629 1.75e-13 66.2
MS.gene019964.t1 AT1G53430 32.000 125 74 4 1 123 794 909 2.78e-13 65.9
MS.gene019964.t1 AT1G53430 32.000 125 74 4 1 123 835 950 2.79e-13 65.9
MS.gene019964.t1 AT1G29720 32.231 121 72 4 1 119 837 949 3.22e-13 65.5
MS.gene019964.t1 AT1G67000 28.788 132 82 5 1 122 721 850 3.86e-13 65.1
MS.gene019964.t1 AT3G55550 32.203 118 70 3 1 116 512 621 3.91e-13 65.1
MS.gene019964.t1 AT5G10290 30.769 117 73 3 1 115 457 567 5.63e-13 64.7
MS.gene019964.t1 AT5G10290 30.769 117 73 3 1 115 457 567 5.63e-13 64.7
MS.gene019964.t1 AT1G53440 31.200 125 75 4 1 123 833 948 6.72e-13 64.7
MS.gene019964.t1 AT2G32800 33.600 125 75 3 1 123 309 427 7.95e-13 64.3
MS.gene019964.t1 AT2G23950 30.435 115 75 1 1 115 462 571 8.17e-13 64.3
MS.gene019964.t1 AT4G18250 35.156 128 73 6 1 122 521 644 9.82e-13 63.9
MS.gene019964.t1 AT1G07650 30.172 116 71 3 1 114 632 739 1.41e-12 63.5
MS.gene019964.t1 AT1G07650 30.172 116 71 3 1 114 819 926 1.44e-12 63.5
MS.gene019964.t1 AT1G07650 30.172 116 71 3 1 114 845 952 1.44e-12 63.5
MS.gene019964.t1 AT1G07650 30.172 116 71 3 1 114 851 958 1.44e-12 63.5
MS.gene019964.t1 AT1G31420 27.642 123 82 2 2 124 470 585 2.07e-12 63.2
MS.gene019964.t1 AT1G31420 27.642 123 82 2 2 124 471 586 2.15e-12 63.2
MS.gene019964.t1 AT1G31420 27.642 123 82 2 2 124 471 586 2.15e-12 63.2
MS.gene019964.t1 AT1G66980 32.308 130 72 7 1 122 952 1073 2.52e-12 62.8
MS.gene019964.t1 AT1G66980 32.308 130 72 7 1 122 969 1090 2.52e-12 62.8
MS.gene019964.t1 AT1G66980 32.308 130 72 7 1 122 996 1117 2.53e-12 62.8
MS.gene019964.t1 AT1G66980 32.308 130 72 7 1 122 998 1119 2.53e-12 62.8
MS.gene019964.t1 AT5G55830 31.967 122 78 1 1 122 533 649 2.63e-12 62.8
MS.gene019964.t1 AT1G67520 31.061 132 80 5 1 126 425 551 2.98e-12 62.8
MS.gene019964.t1 AT1G67520 31.061 132 80 5 1 126 662 788 3.26e-12 62.8
MS.gene019964.t1 AT1G67520 31.061 132 80 5 1 126 454 580 3.34e-12 62.4
MS.gene019964.t1 AT1G67520 31.061 132 80 5 1 126 454 580 3.34e-12 62.4
MS.gene019964.t1 AT1G67520 31.061 132 80 5 1 126 619 745 3.47e-12 62.4
MS.gene019964.t1 AT1G67520 31.061 132 80 5 1 126 669 795 3.63e-12 62.4
MS.gene019964.t1 AT4G28350 31.579 114 66 3 2 113 517 620 5.19e-12 62.0
MS.gene019964.t1 AT5G38280 30.645 124 79 5 2 122 497 616 5.32e-12 62.0
MS.gene019964.t1 AT5G38280 30.645 124 79 5 2 122 497 616 5.33e-12 62.0
MS.gene019964.t1 AT2G16750 27.966 118 79 2 2 119 441 552 6.53e-12 61.6
MS.gene019964.t1 AT2G16750 27.966 118 79 2 2 119 441 552 6.53e-12 61.6
MS.gene019964.t1 AT4G11480 28.571 126 82 4 2 124 488 608 6.70e-12 61.6
MS.gene019964.t1 AT4G11480 28.571 126 82 4 2 124 491 611 6.70e-12 61.6
MS.gene019964.t1 AT4G11480 28.571 126 82 4 2 124 496 616 6.71e-12 61.6
MS.gene019964.t1 AT5G65600 34.921 126 74 5 2 123 516 637 7.34e-12 61.6
MS.gene019964.t1 AT1G66930 30.469 128 78 5 1 122 511 633 7.86e-12 61.6
MS.gene019964.t1 AT1G66930 30.469 128 78 5 1 122 480 602 8.12e-12 61.2
MS.gene019964.t1 AT1G66930 30.469 128 78 5 1 122 720 842 8.23e-12 61.6
MS.gene019964.t1 AT3G13690 31.624 117 70 3 2 116 577 685 9.47e-12 61.2
MS.gene019964.t1 AT3G13690 31.624 117 70 3 2 116 577 685 9.47e-12 61.2
MS.gene019964.t1 AT3G13690 31.624 117 70 3 2 116 577 685 9.47e-12 61.2
MS.gene019964.t1 AT2G37710 33.043 115 72 1 1 115 512 621 9.54e-12 61.2
MS.gene019964.t1 AT5G63940 30.508 118 76 2 2 119 529 640 1.26e-11 60.8
MS.gene019964.t1 AT3G16030 30.827 133 77 5 2 126 694 819 1.70e-11 60.5
MS.gene019964.t1 AT3G59750 30.973 113 72 1 2 114 470 576 1.99e-11 60.5
MS.gene019964.t1 AT4G35030 32.727 110 68 2 2 111 132 235 2.11e-11 60.1
MS.gene019964.t1 AT3G16030 30.827 133 77 5 2 126 715 840 2.12e-11 60.1
MS.gene019964.t1 AT3G16030 30.597 134 78 5 1 126 570 696 2.41e-11 60.1
MS.gene019964.t1 AT4G11490 25.781 128 87 5 2 126 488 610 4.00e-11 59.3
MS.gene019964.t1 AT1G61610 28.926 121 79 1 2 122 692 805 4.33e-11 59.3
MS.gene019964.t1 AT4G30520 29.565 115 76 1 1 115 466 575 4.82e-11 59.3
MS.gene019964.t1 AT1G70520 28.058 139 84 5 1 129 490 622 5.02e-11 59.3
MS.gene019964.t1 AT4G35030 32.727 110 68 2 2 111 273 376 5.02e-11 58.9
MS.gene019964.t1 AT4G35030 32.727 110 68 2 2 111 273 376 5.02e-11 58.9
MS.gene019964.t1 AT4G35030 32.727 110 68 2 2 111 273 376 5.02e-11 58.9
MS.gene019964.t1 AT4G35030 32.727 110 68 2 2 111 273 376 5.02e-11 58.9
MS.gene019964.t1 AT5G38240 28.226 124 83 3 1 122 429 548 5.24e-11 58.9
MS.gene019964.t1 AT1G56120 31.667 120 73 4 1 119 708 819 5.49e-11 58.9
MS.gene019964.t1 AT1G56120 31.667 120 73 4 1 119 856 967 5.55e-11 58.9
MS.gene019964.t1 AT1G56120 31.667 120 73 4 1 119 874 985 5.56e-11 58.9
MS.gene019964.t1 AT5G38240 28.226 124 83 3 1 122 475 594 5.83e-11 58.9
MS.gene019964.t1 AT5G38240 28.226 124 83 3 1 122 493 612 5.85e-11 58.9
MS.gene019964.t1 AT3G59700 28.319 113 75 1 2 114 505 611 6.10e-11 58.9
MS.gene019964.t1 AT1G14370 33.333 123 71 4 2 121 261 375 6.39e-11 58.9
MS.gene019964.t1 AT2G35620 26.613 124 84 2 1 124 467 583 8.94e-11 58.5
MS.gene019964.t1 AT2G35620 26.613 124 84 2 1 124 467 583 8.94e-11 58.5
MS.gene019964.t1 AT2G35620 26.613 124 84 2 1 124 467 583 8.94e-11 58.5
MS.gene019964.t1 AT2G35620 26.613 124 84 2 1 124 467 583 8.94e-11 58.5
MS.gene019964.t1 AT5G38260 30.534 131 72 7 1 122 485 605 9.67e-11 58.2

Find 25 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATAGATGGCCTAATAAT+TGG 0.179313 6.1:-12699541 None:intergenic
TTATAGATTGGGTTCTATAT+TGG 0.218702 6.1:+12699407 MS.gene019964:CDS
TGTGCTCTAATCCAATTATT+AGG 0.277031 6.1:+12699530 MS.gene019964:CDS
TATAGATTGGGTTCTATATT+GGG 0.279264 6.1:+12699408 MS.gene019964:CDS
TGCAGCACCTTTGCAATAGA+TGG 0.356137 6.1:-12699553 None:intergenic
ATGACATGATACTTATAGAT+TGG 0.369608 6.1:+12699395 MS.gene019964:CDS
AGTGTTCCACCATTGTTTGA+TGG 0.394571 6.1:+12699601 MS.gene019964:CDS
AAGTTGTTAATGATTTCATT+AGG 0.396201 6.1:+12699473 MS.gene019964:CDS
TAGAGGGACAATGGGATGTT+TGG 0.404956 6.1:+12699237 None:intergenic
TAGGTTTGAGAGAATGACTA+TGG 0.451333 6.1:+12699492 MS.gene019964:CDS
AAAATGGATATCTACAGCTT+TGG 0.451824 6.1:+12699295 MS.gene019964:CDS
TGACATGATACTTATAGATT+GGG 0.452945 6.1:+12699396 MS.gene019964:CDS
GGTTCTATATTGGGCAAAAG+AGG 0.465154 6.1:+12699417 MS.gene019964:CDS
GAGTTGCATCAAGTTGAAGA+TGG 0.493345 6.1:+12699358 MS.gene019964:CDS
TTTGAGAGAATGACTATGGT+TGG 0.507037 6.1:+12699496 MS.gene019964:CDS
GTTCTATATTGGGCAAAAGA+GGG 0.512150 6.1:+12699418 MS.gene019964:CDS
TGCAAAGGTGCTGCAGATGT+CGG 0.535961 6.1:+12699561 MS.gene019964:CDS
CATTAACAACTTCAACATCA+TGG 0.537170 6.1:-12699462 None:intergenic
CAAGTTGAAGATGGAACAGA+AGG 0.575586 6.1:+12699367 MS.gene019964:CDS
TGGGATGTTTGGCACCAGAA+TGG 0.578599 6.1:+12699248 MS.gene019964:CDS
TATTAGGCCATCTATTGCAA+AGG 0.594426 6.1:+12699546 MS.gene019964:CDS
TTCTATATTGGGCAAAAGAG+GGG 0.600711 6.1:+12699419 MS.gene019964:CDS
AAGGTGCTGCAGATGTCGGA+AGG 0.614948 6.1:+12699565 MS.gene019964:CDS
GTTGAAGATGGAACAGAAGG+TGG 0.634859 6.1:+12699370 MS.gene019964:CDS
GAATGACTATGGTTGGACTG+TGG 0.741878 6.1:+12699503 MS.gene019964:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTGTTAATGATTTCATT+AGG + chr6.1:12699473-12699492 MS.gene019964:CDS 20.0%
!!! AAAATTTTTCCATCAAACAA+TGG - chr6.1:12699613-12699632 None:intergenic 20.0%
!!! TTGAAATCTTATTTTGTAGA+AGG + chr6.1:12699329-12699348 MS.gene019964:CDS 20.0%
! ATGACATGATACTTATAGAT+TGG + chr6.1:12699395-12699414 MS.gene019964:CDS 25.0%
! TATAGATTGGGTTCTATATT+GGG + chr6.1:12699408-12699427 MS.gene019964:CDS 25.0%
! TGACATGATACTTATAGATT+GGG + chr6.1:12699396-12699415 MS.gene019964:CDS 25.0%
! TTATAGATTGGGTTCTATAT+TGG + chr6.1:12699407-12699426 MS.gene019964:CDS 25.0%
AAAATGGATATCTACAGCTT+TGG + chr6.1:12699295-12699314 MS.gene019964:CDS 30.0%
CATTAACAACTTCAACATCA+TGG - chr6.1:12699465-12699484 None:intergenic 30.0%
TGTGCTCTAATCCAATTATT+AGG + chr6.1:12699530-12699549 MS.gene019964:CDS 30.0%
! ATTTTTCCATCAAACAATGG+TGG - chr6.1:12699610-12699629 None:intergenic 30.0%
!! ATATCCATTTTTGCAGTGAT+AGG - chr6.1:12699286-12699305 None:intergenic 30.0%
GCAATAGATGGCCTAATAAT+TGG - chr6.1:12699544-12699563 None:intergenic 35.0%
GTTCTATATTGGGCAAAAGA+GGG + chr6.1:12699418-12699437 MS.gene019964:CDS 35.0%
TAGGTTTGAGAGAATGACTA+TGG + chr6.1:12699492-12699511 MS.gene019964:CDS 35.0%
TATTAGGCCATCTATTGCAA+AGG + chr6.1:12699546-12699565 MS.gene019964:CDS 35.0%
TTCTATATTGGGCAAAAGAG+GGG + chr6.1:12699419-12699438 MS.gene019964:CDS 35.0%
TTTGAGAGAATGACTATGGT+TGG + chr6.1:12699496-12699515 MS.gene019964:CDS 35.0%
AGTGTTCCACCATTGTTTGA+TGG + chr6.1:12699601-12699620 MS.gene019964:CDS 40.0%
GGTTCTATATTGGGCAAAAG+AGG + chr6.1:12699417-12699436 MS.gene019964:CDS 40.0%
TGCACCTATCACTGCAAAAA+TGG + chr6.1:12699279-12699298 MS.gene019964:CDS 40.0%
! CAAGTTGAAGATGGAACAGA+AGG + chr6.1:12699367-12699386 MS.gene019964:CDS 40.0%
!! GAGTTGCATCAAGTTGAAGA+TGG + chr6.1:12699358-12699377 MS.gene019964:CDS 40.0%
GAATGACTATGGTTGGACTG+TGG + chr6.1:12699503-12699522 MS.gene019964:CDS 45.0%
GTTGAAGATGGAACAGAAGG+TGG + chr6.1:12699370-12699389 MS.gene019964:CDS 45.0%
TGCAGCACCTTTGCAATAGA+TGG - chr6.1:12699556-12699575 None:intergenic 45.0%
!! GGTGCATTTTTGAGCCATTC+TGG - chr6.1:12699265-12699284 None:intergenic 45.0%
TGGGATGTTTGGCACCAGAA+TGG + chr6.1:12699248-12699267 MS.gene019964:CDS 50.0%
!! TGCAAAGGTGCTGCAGATGT+CGG + chr6.1:12699561-12699580 MS.gene019964:CDS 50.0%
!! AAGGTGCTGCAGATGTCGGA+AGG + chr6.1:12699565-12699584 MS.gene019964:CDS 55.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 12699247 12699636 12699247 ID=MS.gene019964
chr6.1 mRNA 12699247 12699636 12699247 ID=MS.gene019964.t1;Parent=MS.gene019964
chr6.1 exon 12699247 12699636 12699247 ID=MS.gene019964.t1.exon1;Parent=MS.gene019964.t1
chr6.1 CDS 12699247 12699636 12699247 ID=cds.MS.gene019964.t1;Parent=MS.gene019964.t1
Gene Sequence

>MS.gene019964

ATGGGATGTTTGGCACCAGAATGGCTCAAAAATGCACCTATCACTGCAAAAATGGATATCTACAGCTTTGGTGTCATGTTGCTTGAAATCTTATTTTGTAGAAGGCACATTGAGTTGCATCAAGTTGAAGATGGAACAGAAGGTGGTGATGACATGATACTTATAGATTGGGTTCTATATTGGGCAAAAGAGGGGAAACTGAGAGACATTCTTAGCCATGATGTTGAAGTTGTTAATGATTTCATTAGGTTTGAGAGAATGACTATGGTTGGACTGTGGTGCTTGTGCTCTAATCCAATTATTAGGCCATCTATTGCAAAGGTGCTGCAGATGTCGGAAGGAGATTTTGAAGTTAGTGTTCCACCATTGTTTGATGGAAAAATTTTGTAA
Protein sequence

>MS.gene019964.t1

MGCLAPEWLKNAPITAKMDIYSFGVMLLEILFCRRHIELHQVEDGTEGGDDMILIDWVLYWAKEGKLRDILSHDVEVVNDFIRFERMTMVGLWCLCSNPIIRPSIAKVLQMSEGDFEVSVPPLFDGKIL