AlfalfaGEDB | MS.gene020070

M. sativa cultivar XinJiangDaYe / MS.gene020070

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020070.t1	GAU37750.1	43.4	122	68	1	1	121	88	209	2.90E-19	104.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020070.t1	A0A2Z6NMK1	43.4	122	68	1	1	121	88	209	2.1e-19	104.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene020070.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 29 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAATGGATTCCATGG+TGG	0.635851	8.2:+79587142	MS.gene020070:CDS
AAGACAATGGATTCCATGGT+GGG	0.554852	8.2:+79587143	MS.gene020070:CDS
AAGGCAACAAAGATTGGCAG+TGG	0.574230	8.2:+79587103	MS.gene020070:CDS
AAGTACATCAAATGTAATGA+AGG	0.524181	8.2:+79587195	MS.gene020070:CDS
AATGATCTTAACTCCTTATA+TGG	0.327626	8.2:+79586868	MS.gene020070:CDS
ACAAATGTGATGTACTAATA+AGG	0.256110	8.2:+79587068	MS.gene020070:CDS
ACTTAAGCTTATCCCCACCA+TGG	0.632346	8.2:-79587156	None:intergenic
AGACAATGGATTCCATGGTG+GGG	0.640570	8.2:+79587144	MS.gene020070:CDS
AGGCAACAAAGATTGGCAGT+GGG	0.670518	8.2:+79587104	MS.gene020070:CDS
ATGTCAACTCATTGCCATCA+TGG	0.539340	8.2:+79586804	MS.gene020070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAAGGCAACAAAGAT+TGG	+	chr8.2:79587097-79587116	MS.gene020070:CDS	30.0%
AATAAGGGATGGAAAAAAGA+AGG	+	chr8.2:79587084-79587103	MS.gene020070:CDS	30.0%
ATTAATATGTATGGACCTAC+AGG	+	chr8.2:79587037-79587056	MS.gene020070:CDS	30.0%
CAAATGTAATGAAGGTTTCT+AGG	+	chr8.2:79587203-79587222	MS.gene020070:CDS	30.0%
TAGTACATCACATTTGTACT+CGG	-	chr8.2:79587065-79587084	None:intergenic	30.0%
TGTGATGTACTAATAAGGGA+TGG	+	chr8.2:79587073-79587092	MS.gene020070:CDS	35.0%
ATGTCAACTCATTGCCATCA+TGG	+	chr8.2:79586804-79586823	MS.gene020070:CDS	40.0%
CACTTACAAGCAAGGAATTG+AGG	+	chr8.2:79586829-79586848	MS.gene020070:CDS	40.0%
GGTGATTACATTAGAAGCTC+AGG	+	chr8.2:79587004-79587023	MS.gene020070:CDS	40.0%
TATGGCTGCAGGTTATCAAT+TGG	+	chr8.2:79586886-79586905	MS.gene020070:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	79586788	79587231	79586788	ID=MS.gene020070
chr8.2	mRNA	79586788	79587231	79586788	ID=MS.gene020070.t1;Parent=MS.gene020070
chr8.2	exon	79586788	79586907	79586788	ID=MS.gene020070.t1.exon1;Parent=MS.gene020070.t1
chr8.2	CDS	79586788	79586907	79586788	ID=cds.MS.gene020070.t1;Parent=MS.gene020070.t1
chr8.2	exon	79586986	79587231	79586986	ID=MS.gene020070.t1.exon2;Parent=MS.gene020070.t1
chr8.2	CDS	79586986	79587231	79586986	ID=cds.MS.gene020070.t1;Parent=MS.gene020070.t1

Gene Sequence

>MS.gene020070

ATGTCAACTCATTTGAATGTCAACTCATTGCCATCATGGCACACTTACAAGCAAGGAATTGAGGATCTCAACCATTATGAAATGATCTTAACTCCTTATATGGCTGCAGGTTATCAATTGGTAAGTACCAACAACTCCTTCTAAAATGATACATCTCTATAAAGTTGAAAGCTATTCTAATTGTCATTTTTTTTTCAGACACTGAACATTGACTTTGGTGATTACATTAGAAGCTCAGGCTACTCTGCTATTAATATGTATGGACCTACAGGCACCGAGTACAAATGTGATGTACTAATAAGGGATGGAAAAAAGAAGGCAACAAAGATTGGCAGTGGGTGGAACAAATTTTGTAAAGACAATGGATTCCATGGTGGGGATAAGCTTAAGTTTAAGTTTGTGGATATAAGTACATCAAATGTAATGAAGGTTTCTAGGATTTAA

Protein sequence

>MS.gene020070.t1

MSTHLNVNSLPSWHTYKQGIEDLNHYEMILTPYMAAGYQLTLNIDFGDYIRSSGYSAINMYGPTGTEYKCDVLIRDGKKKATKIGSGWNKFCKDNGFHGGDKLKFKFVDISTSNVMKVSRI