AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020288

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020288.t1 MTR_7g095680 97.351 302 6 1 1 300 1 302 0.0 602
MS.gene020288.t1 MTR_1g102860 65.106 235 78 2 26 259 17 248 5.26e-105 310
MS.gene020288.t1 MTR_1g071360 58.497 306 86 5 1 296 1 275 6.69e-103 305
MS.gene020288.t1 MTR_1g071360 58.086 303 86 5 4 296 1 272 1.07e-99 298
MS.gene020288.t1 MTR_3g104550 63.761 218 73 2 34 251 31 242 2.16e-96 290
MS.gene020288.t1 MTR_5g029680 59.009 222 85 1 35 250 18 239 1.36e-88 274
MS.gene020288.t1 MTR_4g077970 57.005 207 84 1 48 249 11 217 2.75e-78 247
MS.gene020288.t1 MTR_1g061170 51.271 236 110 4 35 270 35 265 6.80e-72 229
MS.gene020288.t1 MTR_8g087540 41.667 228 121 3 48 275 11 226 2.40e-54 182
MS.gene020288.t1 MTR_6g086805 38.583 254 147 3 49 302 11 255 3.70e-54 180
MS.gene020288.t1 MTR_8g105780 48.485 198 88 3 49 236 22 215 3.92e-54 181
MS.gene020288.t1 MTR_2g100680 39.655 232 129 5 46 273 28 252 2.70e-51 176
MS.gene020288.t1 MTR_8g083100 47.059 204 98 6 50 252 23 217 1.38e-50 174
MS.gene020288.t1 MTR_6g043060 44.878 205 99 5 49 250 22 215 1.93e-50 170
MS.gene020288.t1 MTR_2g017890 36.800 250 131 5 48 284 14 249 1.17e-47 164
MS.gene020288.t1 MTR_2g100670 43.386 189 102 2 43 231 27 210 2.23e-47 161
MS.gene020288.t1 MTR_2g100670 43.386 189 102 2 43 231 135 318 3.27e-46 161
MS.gene020288.t1 MTR_5g017470 66.667 102 34 0 46 147 6 107 1.22e-45 156
MS.gene020288.t1 MTR_3g101870 68.932 103 31 1 43 145 18 119 8.33e-45 156
MS.gene020288.t1 MTR_5g010680 65.957 94 32 0 47 140 22 115 5.76e-43 151
MS.gene020288.t1 MTR_1g100777 61.702 94 36 0 47 140 16 109 3.73e-41 145
MS.gene020288.t1 MTR_5g089170 65.957 94 32 0 47 140 23 116 1.06e-40 142
MS.gene020288.t1 MTR_7g091370 45.062 162 77 3 40 189 9 170 4.16e-40 140
MS.gene020288.t1 MTR_0020s0020 60.638 94 37 0 47 140 31 124 9.44e-40 142
MS.gene020288.t1 MTR_4g088900 38.462 182 97 5 47 224 31 201 1.69e-33 122
MS.gene020288.t1 MTR_1g061170 44.444 162 85 4 109 270 14 170 1.02e-30 119
MS.gene020288.t1 MTR_4g045757 57.143 70 29 1 40 108 5 74 5.79e-22 88.2
MS.gene020288.t1 MTR_5g047190 44.828 87 41 2 57 136 1 87 4.24e-18 78.6
MS.gene020288.t1 MTR_2g043940 31.081 148 85 4 85 227 7 142 9.46e-15 74.3
MS.gene020288.t1 MTR_6g044340 30.000 150 97 4 101 250 14 155 2.33e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020288.t1 AT3G22830 59.609 307 93 5 24 300 36 341 7.65e-121 353
MS.gene020288.t1 AT3G51910 56.538 260 78 5 39 297 19 244 8.38e-93 277
MS.gene020288.t1 AT2G26150 61.111 216 82 2 36 250 31 245 1.30e-91 276
MS.gene020288.t1 AT2G26150 61.111 216 82 2 36 250 31 245 1.30e-91 276
MS.gene020288.t1 AT1G32330 58.333 228 80 4 36 250 24 249 7.34e-84 261
MS.gene020288.t1 AT1G32330 58.333 228 80 4 36 250 24 249 7.62e-84 261
MS.gene020288.t1 AT4G17750 49.265 272 111 5 26 276 23 288 1.49e-83 260
MS.gene020288.t1 AT3G63350 49.630 270 110 4 36 302 15 261 4.96e-81 247
MS.gene020288.t1 AT5G16820 51.538 260 110 5 27 276 10 263 1.34e-80 253
MS.gene020288.t1 AT5G16820 51.538 260 110 5 27 276 10 263 1.34e-80 253
MS.gene020288.t1 AT3G02990 53.913 230 99 3 48 270 22 251 3.35e-79 248
MS.gene020288.t1 AT5G43840 45.583 283 121 7 35 303 5 268 5.93e-76 234
MS.gene020288.t1 AT5G03720 47.638 254 117 5 35 282 41 284 1.10e-69 222
MS.gene020288.t1 AT5G03720 47.638 254 117 5 35 282 41 284 1.10e-69 222
MS.gene020288.t1 AT1G67970 51.053 190 91 2 49 237 19 207 2.60e-61 199
MS.gene020288.t1 AT5G54070 39.545 220 120 3 42 258 63 272 1.10e-54 181
MS.gene020288.t1 AT3G24520 42.857 203 92 2 49 251 17 195 1.12e-51 173
MS.gene020288.t1 AT4G13980 43.478 207 102 4 50 252 24 219 6.61e-51 175
MS.gene020288.t1 AT2G26150 55.245 143 62 2 109 250 49 190 1.68e-45 156
MS.gene020288.t1 AT2G26150 55.245 143 62 2 109 250 49 190 1.68e-45 156
MS.gene020288.t1 AT4G18880 43.455 191 108 0 41 231 7 197 1.69e-45 159
MS.gene020288.t1 AT1G46264 66.981 106 34 1 39 144 24 128 9.10e-44 153
MS.gene020288.t1 AT5G45710 41.146 192 111 2 48 239 12 201 1.41e-43 152
MS.gene020288.t1 AT5G45710 41.146 192 111 2 48 239 12 201 1.41e-43 152
MS.gene020288.t1 AT4G11660 63.636 99 35 1 47 145 57 154 3.79e-41 147
MS.gene020288.t1 AT5G62020 50.769 130 60 1 47 172 21 150 8.09e-41 144
MS.gene020288.t1 AT4G36990 56.522 115 43 1 47 161 12 119 2.11e-40 142
MS.gene020288.t1 AT2G41690 62.766 94 35 0 47 140 38 131 1.01e-39 140
MS.gene020288.t1 AT4G18870 36.290 124 79 0 38 161 135 258 5.72e-25 102
MS.gene020288.t1 AT4G18870 49.438 89 40 2 50 136 14 99 1.85e-22 95.5
MS.gene020288.t1 AT1G77570 34.483 87 54 2 50 133 27 113 5.76e-11 60.1
MS.gene020288.t1 AT4G19630 35.106 94 58 1 46 136 8 101 7.71e-11 59.3

Find 71 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAAACTCCCATTTATC+AGG 0.290173 7.4:+13680081 None:intergenic
TGGTGCTAGCTTTGTTGTTT+GGG 0.306922 7.4:-13680969 MS.gene020288:CDS
GTGGTGCTAGCTTTGTTGTT+TGG 0.312326 7.4:-13680970 MS.gene020288:CDS
TGTGTTGAAGTTGGTCGTTT+TGG 0.363566 7.4:-13679955 MS.gene020288:CDS
CATTTGTTGCTGCTTAATTT+CGG 0.365368 7.4:+13679804 None:intergenic
AGGAGAAGGCCAATTGAGTA+TGG 0.367381 7.4:-13679679 MS.gene020288:CDS
CTTGATTCTCCATACTCAAT+TGG 0.368141 7.4:+13679670 None:intergenic
TCTAAATACTCTTCTTTCAC+TGG 0.377680 7.4:+13681169 None:intergenic
TTCCTCCATTGCTTGAAGAA+TGG 0.378113 7.4:+13679840 None:intergenic
CAACAAGTCACATAGTTTCA+TGG 0.398902 7.4:-13681000 MS.gene020288:CDS
CACAAAGACATTTGATGTTG+TGG 0.406218 7.4:-13681032 MS.gene020288:CDS
AAATGGGAGTTTGCAAATGA+AGG 0.436132 7.4:-13680075 MS.gene020288:CDS
GCTATGGAAATGCAGGGTCT+TGG 0.436909 7.4:-13679583 MS.gene020288:CDS
TCAAATGTCTTTGTGAGAAA+TGG 0.443148 7.4:+13681040 None:intergenic
AGGTCTCTGGAGAAAGCATT+TGG 0.449261 7.4:+13680944 None:intergenic
TTGTTGTGTTTGAAGTATCT+AGG 0.454609 7.4:+13680917 None:intergenic
GGAAGGAGCAGTGTTAGATA+TGG 0.456890 7.4:-13679634 MS.gene020288:CDS
AAGAGGTGGTGGAGAGCTTG+AGG 0.469597 7.4:-13679560 MS.gene020288:CDS
GTATCTAGGAAGAAGGTCTC+TGG 0.470929 7.4:+13680931 None:intergenic
AGAGCTTGAGGAAGAGATTG+AGG 0.477721 7.4:-13679548 MS.gene020288:intron
AGTAATTGCTGAATAAAAGC+TGG 0.482397 7.4:+13679751 None:intergenic
CAAGGTCATTGTGTTGAAGT+TGG 0.497401 7.4:-13679964 MS.gene020288:CDS
GTTATTCCACGGCCAATGGA+GGG 0.502097 7.4:-13681085 MS.gene020288:CDS
CAGGGTCTTGGAAGAGGTGG+TGG 0.504100 7.4:-13679571 MS.gene020288:CDS
GGTTGTTATTCCACGGCCAA+TGG 0.506460 7.4:-13681089 MS.gene020288:CDS
TGGATTTGAAGTGTCAGAGT+TGG 0.506828 7.4:-13679614 MS.gene020288:CDS
GATTGTTGTTGTGAAGTACT+AGG 0.510219 7.4:+13679991 None:intergenic
AATTAAGCAGCAACAAATGA+TGG 0.512562 7.4:-13679800 MS.gene020288:CDS
GCAAATGAAGGATTTCTAAG+AGG 0.518927 7.4:-13680063 MS.gene020288:CDS
TGTTATTCCACGGCCAATGG+AGG 0.521139 7.4:-13681086 MS.gene020288:CDS
ACTTCATGAAGCCCCTCCAT+TGG 0.523280 7.4:+13681073 None:intergenic
GTTTGAAGTATCTAGGAAGA+AGG 0.525332 7.4:+13680924 None:intergenic
TGAAGCCCCTCCATTGGCCG+TGG 0.526845 7.4:+13681079 None:intergenic
TCAGCAATTACTTCAACAGA+AGG 0.528664 7.4:-13679740 MS.gene020288:CDS
GTTGATTGGACAAGAACCTC+TGG 0.533008 7.4:-13679008 MS.gene020288:CDS
TGAAACTATGTGACTTGTTG+TGG 0.534841 7.4:+13681003 None:intergenic
AATGCTGGCTATGGAAATGC+AGG 0.541022 7.4:-13679590 MS.gene020288:CDS
GAATCAAGTAATGGTGGTGA+TGG 0.544567 7.4:-13679655 MS.gene020288:CDS
CTAAATACTCTTCTTTCACT+GGG 0.546539 7.4:+13681170 None:intergenic
GAAATGCAGGGTCTTGGAAG+AGG 0.548123 7.4:-13679577 MS.gene020288:CDS
TGACAAACAAGTGTTAATGA+TGG 0.548560 7.4:-13679902 MS.gene020288:CDS
TCAACAGAAGGAAAAGAGAA+AGG 0.548892 7.4:-13679728 MS.gene020288:CDS
TATGAAAGAGGAAGTGATGA+GGG 0.553152 7.4:-13681118 MS.gene020288:CDS
TTATTCCACGGCCAATGGAG+GGG 0.553219 7.4:-13681084 MS.gene020288:CDS
GAAACTATGTGACTTGTTGT+GGG 0.554070 7.4:+13681004 None:intergenic
TTCTTCAAGCAATGGAGGAA+AGG 0.554568 7.4:-13679837 MS.gene020288:CDS
AGAGTTGGAAATGCTGGCTA+TGG 0.563110 7.4:-13679599 MS.gene020288:CDS
GATCAACGGTTGTTATTCCA+CGG 0.563873 7.4:-13681096 MS.gene020288:CDS
ATGGAGGGGCTTCATGAAGT+AGG 0.569714 7.4:-13681070 MS.gene020288:CDS
CAAGTAATGGTGGTGATGGA+AGG 0.570233 7.4:-13679651 MS.gene020288:CDS
AGTGTCAGAGTTGGAAATGC+TGG 0.571819 7.4:-13679605 MS.gene020288:CDS
ATCCATTCTTCAAGCAATGG+AGG 0.576630 7.4:-13679842 MS.gene020288:CDS
TCATCATCGATATATGAAAG+AGG 0.577051 7.4:-13681130 MS.gene020288:CDS
AAGATGCTATTACTAAGAAG+AGG 0.582617 7.4:-13679699 MS.gene020288:CDS
ATAGTTTCATGGAGCAGAAG+TGG 0.585048 7.4:-13680989 MS.gene020288:CDS
AAGATCCATTCTTCAAGCAA+TGG 0.586126 7.4:-13679845 MS.gene020288:CDS
AGGAAGTGATGAGGGATCAA+CGG 0.610055 7.4:-13681110 MS.gene020288:CDS
GAGTATGGAGAATCAAGTAA+TGG 0.613238 7.4:-13679664 MS.gene020288:CDS
ATGCAGGGTCTTGGAAGAGG+TGG 0.614702 7.4:-13679574 MS.gene020288:CDS
ATATGAAAGAGGAAGTGATG+AGG 0.618653 7.4:-13681119 MS.gene020288:CDS
CTATTACTAAGAAGAGGAGA+AGG 0.622937 7.4:-13679693 MS.gene020288:CDS
AAAGACATTTGATGTTGTGG+AGG 0.626606 7.4:-13681029 MS.gene020288:CDS
AATGTCTTTGTGAGAAATGG+TGG 0.633018 7.4:+13681043 None:intergenic
TTCATATATCGATGATGACG+AGG 0.649679 7.4:+13681135 None:intergenic
TATGGAGAATCAAGTAATGG+TGG 0.653267 7.4:-13679661 MS.gene020288:CDS
GTCTTTGTGAGAAATGGTGG+TGG 0.661352 7.4:+13681046 None:intergenic
TCATCTCTATCAACTACCAG+AGG 0.673100 7.4:+13678992 None:intergenic
TCACAACAACAATCATCACA+AGG 0.699849 7.4:-13679982 MS.gene020288:CDS
GCAATGGAGGAAAGGCTACG+TGG 0.702933 7.4:-13679829 MS.gene020288:CDS
AAACTATGTGACTTGTTGTG+GGG 0.712916 7.4:+13681005 None:intergenic
ATGCTGGCTATGGAAATGCA+GGG 0.739262 7.4:-13679589 MS.gene020288:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAATCTAAGAAGAT+TGG - chr7.4:13679428-13679447 MS.gene020288:intron 15.0%
!! ATTCAGATAACATATATAAA+AGG + chr7.4:13679618-13679637 None:intergenic 15.0%
!! TAGAAACACAAAAATTTAAA+TGG + chr7.4:13680980-13680999 None:intergenic 15.0%
!!! ATTTTACATTACTTGTATAT+TGG - chr7.4:13679514-13679533 MS.gene020288:intron 15.0%
!!! TTAAGATCAAAATTTTCTTT+TGG + chr7.4:13679382-13679401 None:intergenic 15.0%
!!! TTTTATGGAGTTTAAAAAAA+AGG + chr7.4:13679784-13679803 None:intergenic 15.0%
!! AAAAATTGATCCTGATAAAT+GGG - chr7.4:13680094-13680113 MS.gene020288:CDS 20.0%
!! AATAAAAAACCTAACTCATA+TGG + chr7.4:13680028-13680047 None:intergenic 20.0%
!! CCATAAAAAATAGTATTATC+TGG - chr7.4:13679796-13679815 MS.gene020288:CDS 20.0%
!!! ACTCAATTTTTTTGTATACA+GGG - chr7.4:13680065-13680084 MS.gene020288:CDS 20.0%
!!! CCAGATAATACTATTTTTTA+TGG + chr7.4:13679799-13679818 None:intergenic 20.0%
!!! TTTATTTTAAATGTCGATGT+GGG - chr7.4:13680042-13680061 MS.gene020288:CDS 20.0%
!!! TTTCTTTTGGTTACTTAATT+GGG + chr7.4:13679369-13679388 None:intergenic 20.0%
!!! TTTTATTTTAAATGTCGATG+TGG - chr7.4:13680041-13680060 MS.gene020288:CDS 20.0%
!!! TTTTCTTTTGGTTACTTAAT+TGG + chr7.4:13679370-13679389 None:intergenic 20.0%
! ATGAATAAAGAACTTGATGA+AGG - chr7.4:13680680-13680699 MS.gene020288:intron 25.0%
! GAAAAATTGATCCTGATAAA+TGG - chr7.4:13680093-13680112 MS.gene020288:CDS 25.0%
! TATTTATTGCCATATGAGTT+AGG - chr7.4:13680016-13680035 MS.gene020288:CDS 25.0%
! TGAATAAAGAACTTGATGAA+GGG - chr7.4:13680681-13680700 MS.gene020288:intron 25.0%
!! ATGTTTCTCTCTTATTGATT+AGG - chr7.4:13681140-13681159 MS.gene020288:CDS 25.0%
!! TTTTAGCAAACATTAAGAGA+AGG - chr7.4:13680156-13680175 MS.gene020288:intron 25.0%
!!! AAATATTATTTAGCTTGCGT+AGG + chr7.4:13679578-13679597 None:intergenic 25.0%
!!! GACTCAATTTTTTTGTATAC+AGG - chr7.4:13680064-13680083 MS.gene020288:CDS 25.0%
AAGATGCTATTACTAAGAAG+AGG - chr7.4:13680486-13680505 MS.gene020288:intron 30.0%
AATTAAGCAGCAACAAATGA+TGG - chr7.4:13680385-13680404 MS.gene020288:intron 30.0%
AGTAATTGCTGAATAAAAGC+TGG + chr7.4:13680437-13680456 None:intergenic 30.0%
CATCTTAGTTCAACATCAAA+TGG + chr7.4:13679907-13679926 None:intergenic 30.0%
CGATTAAGCGTAATTCATTT+CGG + chr7.4:13680830-13680849 None:intergenic 30.0%
CTAAATACTCTTCTTTCACT+GGG + chr7.4:13679018-13679037 None:intergenic 30.0%
GATGAGAAGAATACTTACAT+AGG + chr7.4:13679323-13679342 None:intergenic 30.0%
TACCATTATACCATTACCTA+TGG - chr7.4:13679971-13679990 MS.gene020288:CDS 30.0%
TCAAATGTCTTTGTGAGAAA+TGG + chr7.4:13679148-13679167 None:intergenic 30.0%
TCATCATCGATATATGAAAG+AGG - chr7.4:13679055-13679074 MS.gene020288:intron 30.0%
TCTAAATACTCTTCTTTCAC+TGG + chr7.4:13679019-13679038 None:intergenic 30.0%
TGACAAACAAGTGTTAATGA+TGG - chr7.4:13680283-13680302 MS.gene020288:intron 30.0%
TGTATGTTTGGTATACCAAT+GGG - chr7.4:13681039-13681058 MS.gene020288:CDS 30.0%
! AACCATAGGTAATGGTATAA+TGG + chr7.4:13679976-13679995 None:intergenic 30.0%
! ATATGTCCTTTTGTAGTAAC+AGG - chr7.4:13681011-13681030 MS.gene020288:CDS 30.0%
! CATTTGTTGCTGCTTAATTT+CGG + chr7.4:13680384-13680403 None:intergenic 30.0%
! CTTATTGTTTCCTGGATTTT+TGG - chr7.4:13679855-13679874 MS.gene020288:CDS 30.0%
! TTCTCTCTTATTGATTAGGT+AGG - chr7.4:13681144-13681163 MS.gene020288:CDS 30.0%
! TTGTTGTGTTTGAAGTATCT+AGG + chr7.4:13679271-13679290 None:intergenic 30.0%
!! ATGATGGACTGATTAAGATT+CGG - chr7.4:13680867-13680886 MS.gene020288:intron 30.0%
AAAGACATTTGATGTTGTGG+AGG - chr7.4:13679156-13679175 MS.gene020288:intron 35.0%
AAATGGGAGTTTGCAAATGA+AGG - chr7.4:13680110-13680129 MS.gene020288:intron 35.0%
AAGATCCATTCTTCAAGCAA+TGG - chr7.4:13680340-13680359 MS.gene020288:intron 35.0%
AATCCAGAAACCAAAAATCC+AGG + chr7.4:13679868-13679887 None:intergenic 35.0%
AATGTCTTTGTGAGAAATGG+TGG + chr7.4:13679145-13679164 None:intergenic 35.0%
ACTACCAAGCAAAAAATCTG+TGG - chr7.4:13680951-13680970 MS.gene020288:CDS 35.0%
ACTTGACCTGTTACTACAAA+AGG + chr7.4:13681020-13681039 None:intergenic 35.0%
ATATGAAAGAGGAAGTGATG+AGG - chr7.4:13679066-13679085 MS.gene020288:intron 35.0%
ATTGCTTCAACCATAGGTAA+TGG + chr7.4:13679984-13680003 None:intergenic 35.0%
CAACAAGTCACATAGTTTCA+TGG - chr7.4:13679185-13679204 MS.gene020288:intron 35.0%
CACAAAGACATTTGATGTTG+TGG - chr7.4:13679153-13679172 MS.gene020288:intron 35.0%
CTATTACTAAGAAGAGGAGA+AGG - chr7.4:13680492-13680511 MS.gene020288:intron 35.0%
CTTGATTCTCCATACTCAAT+TGG + chr7.4:13680518-13680537 None:intergenic 35.0%
GAGTATGGAGAATCAAGTAA+TGG - chr7.4:13680521-13680540 MS.gene020288:intron 35.0%
GATTAACCTTCTTCGTATGA+TGG - chr7.4:13680851-13680870 MS.gene020288:intron 35.0%
GCAAATGAAGGATTTCTAAG+AGG - chr7.4:13680122-13680141 MS.gene020288:intron 35.0%
GTGTATGTTTGGTATACCAA+TGG - chr7.4:13681038-13681057 MS.gene020288:CDS 35.0%
TAACAGGTCAAGTGTATGTT+TGG - chr7.4:13681027-13681046 MS.gene020288:CDS 35.0%
TATGAAAGAGGAAGTGATGA+GGG - chr7.4:13679067-13679086 MS.gene020288:intron 35.0%
TATGGAGAATCAAGTAATGG+TGG - chr7.4:13680524-13680543 MS.gene020288:intron 35.0%
TCAACAGAAGGAAAAGAGAA+AGG - chr7.4:13680457-13680476 MS.gene020288:intron 35.0%
TCACAACAACAATCATCACA+AGG - chr7.4:13680203-13680222 MS.gene020288:intron 35.0%
TCAGCAATTACTTCAACAGA+AGG - chr7.4:13680445-13680464 MS.gene020288:intron 35.0%
TTTGCAAACTCCCATTTATC+AGG + chr7.4:13680107-13680126 None:intergenic 35.0%
! AAGAACTTGATGAAGGGTTT+TGG - chr7.4:13680687-13680706 MS.gene020288:intron 35.0%
! AGAACTTGATGAAGGGTTTT+GGG - chr7.4:13680688-13680707 MS.gene020288:intron 35.0%
! GATTGTTGTTGTGAAGTACT+AGG + chr7.4:13680197-13680216 None:intergenic 35.0%
! GTTTGAAGTATCTAGGAAGA+AGG + chr7.4:13679264-13679283 None:intergenic 35.0%
! TTCATATATCGATGATGACG+AGG + chr7.4:13679053-13679072 None:intergenic 35.0%
!! AAACTATGTGACTTGTTGTG+GGG + chr7.4:13679183-13679202 None:intergenic 35.0%
!! GAAACTATGTGACTTGTTGT+GGG + chr7.4:13679184-13679203 None:intergenic 35.0%
!! TGAAACTATGTGACTTGTTG+TGG + chr7.4:13679185-13679204 None:intergenic 35.0%
!!! GCAACAAATGATGGCTTTTT+TGG - chr7.4:13680394-13680413 MS.gene020288:intron 35.0%
!!! GTTTCCACAGATTTTTTGCT+TGG + chr7.4:13680958-13680977 None:intergenic 35.0%
!!! TTTCCTGGATTTTTGGTTTC+TGG - chr7.4:13679862-13679881 MS.gene020288:CDS 35.0%
AATGTGTTGTCCAATCGCTT+TGG - chr7.4:13680788-13680807 MS.gene020288:intron 40.0%
ACCTAAGTAACCAAAGCGAT+TGG + chr7.4:13680801-13680820 None:intergenic 40.0%
AGTTCAACATCAAATGGAGC+AGG + chr7.4:13679901-13679920 None:intergenic 40.0%
ATAGTTTCATGGAGCAGAAG+TGG - chr7.4:13679196-13679215 MS.gene020288:intron 40.0%
ATCAGTCCATCATACGAAGA+AGG + chr7.4:13680860-13680879 None:intergenic 40.0%
ATCCATTCTTCAAGCAATGG+AGG - chr7.4:13680343-13680362 MS.gene020288:intron 40.0%
CAAGGTCATTGTGTTGAAGT+TGG - chr7.4:13680221-13680240 MS.gene020288:intron 40.0%
GATTCGGACTCAAAATCGAT+CGG - chr7.4:13680883-13680902 MS.gene020288:CDS 40.0%
TCCAATCGCTTTGGTTACTT+AGG - chr7.4:13680797-13680816 MS.gene020288:intron 40.0%
TGTAATTTCGACCAACCCAT+TGG + chr7.4:13681057-13681076 None:intergenic 40.0%
TGTGCAATTGCTTCAACCAT+AGG + chr7.4:13679990-13680009 None:intergenic 40.0%
TGTTTGGTATACCAATGGGT+TGG - chr7.4:13681043-13681062 MS.gene020288:CDS 40.0%
TTCCTCCATTGCTTGAAGAA+TGG + chr7.4:13680348-13680367 None:intergenic 40.0%
TTCTTCAAGCAATGGAGGAA+AGG - chr7.4:13680348-13680367 MS.gene020288:intron 40.0%
TTGAAATTTGAGCGCATGTC+TGG + chr7.4:13681114-13681133 None:intergenic 40.0%
! CGTCTTGTCTTATTGTTTCC+TGG - chr7.4:13679847-13679866 MS.gene020288:CDS 40.0%
! GAATCAAGTAATGGTGGTGA+TGG - chr7.4:13680530-13680549 MS.gene020288:intron 40.0%
! GATCAACGGTTGTTATTCCA+CGG - chr7.4:13679089-13679108 MS.gene020288:intron 40.0%
! TAGGTTTTGCAGCTGTTGAT+TGG - chr7.4:13681163-13681182 MS.gene020288:CDS 40.0%
! TGGATTTGAAGTGTCAGAGT+TGG - chr7.4:13680571-13680590 MS.gene020288:intron 40.0%
!! TGGTGCTAGCTTTGTTGTTT+GGG - chr7.4:13679216-13679235 MS.gene020288:intron 40.0%
!! TGTGTTGAAGTTGGTCGTTT+TGG - chr7.4:13680230-13680249 MS.gene020288:intron 40.0%
AGAGCTTGAGGAAGAGATTG+AGG - chr7.4:13680637-13680656 MS.gene020288:intron 45.0%
AGGAAGTGATGAGGGATCAA+CGG - chr7.4:13679075-13679094 MS.gene020288:intron 45.0%
AGGAGAAGGCCAATTGAGTA+TGG - chr7.4:13680506-13680525 MS.gene020288:intron 45.0%
AGTGTCAGAGTTGGAAATGC+TGG - chr7.4:13680580-13680599 MS.gene020288:intron 45.0%
CAACATCAAATGGAGCAGGT+AGG + chr7.4:13679897-13679916 None:intergenic 45.0%
GGAAGGAGCAGTGTTAGATA+TGG - chr7.4:13680551-13680570 MS.gene020288:intron 45.0%
GTATCTAGGAAGAAGGTCTC+TGG + chr7.4:13679257-13679276 None:intergenic 45.0%
GTCTTTGTGAGAAATGGTGG+TGG + chr7.4:13679142-13679161 None:intergenic 45.0%
GTTGATTGGACAAGAACCTC+TGG - chr7.4:13681177-13681196 MS.gene020288:CDS 45.0%
! AATAGTAGCGTGGTCTTGGT+TGG - chr7.4:13680908-13680927 MS.gene020288:CDS 45.0%
! AATGCTGGCTATGGAAATGC+AGG - chr7.4:13680595-13680614 MS.gene020288:intron 45.0%
! AGAGTTGGAAATGCTGGCTA+TGG - chr7.4:13680586-13680605 MS.gene020288:intron 45.0%
! ATGCTGGCTATGGAAATGCA+GGG - chr7.4:13680596-13680615 MS.gene020288:intron 45.0%
!! AGGTCTCTGGAGAAAGCATT+TGG + chr7.4:13679244-13679263 None:intergenic 45.0%
!! CAAGTAATGGTGGTGATGGA+AGG - chr7.4:13680534-13680553 MS.gene020288:intron 45.0%
!! GTGGTGCTAGCTTTGTTGTT+TGG - chr7.4:13679215-13679234 MS.gene020288:intron 45.0%
ACTTCATGAAGCCCCTCCAT+TGG + chr7.4:13679115-13679134 None:intergenic 50.0%
ATGGAGGGGCTTCATGAAGT+AGG - chr7.4:13679115-13679134 MS.gene020288:intron 50.0%
CATCAAATGGAGCAGGTAGG+AGG + chr7.4:13679894-13679913 None:intergenic 50.0%
GAAATGCAGGGTCTTGGAAG+AGG - chr7.4:13680608-13680627 MS.gene020288:intron 50.0%
GCTATGGAAATGCAGGGTCT+TGG - chr7.4:13680602-13680621 MS.gene020288:intron 50.0%
GGACAATAGTAGCGTGGTCT+TGG - chr7.4:13680904-13680923 MS.gene020288:CDS 50.0%
GTCTGGTATCGTGGTGAGTT+TGG + chr7.4:13681097-13681116 None:intergenic 50.0%
GTTATTCCACGGCCAATGGA+GGG - chr7.4:13679100-13679119 MS.gene020288:intron 50.0%
TCGATCGGACAATAGTAGCG+TGG - chr7.4:13680898-13680917 MS.gene020288:CDS 50.0%
TGTTATTCCACGGCCAATGG+AGG - chr7.4:13679099-13679118 MS.gene020288:intron 50.0%
TTATTCCACGGCCAATGGAG+GGG - chr7.4:13679101-13679120 MS.gene020288:intron 50.0%
! GGTTGTTATTCCACGGCCAA+TGG - chr7.4:13679096-13679115 MS.gene020288:intron 50.0%
ATGCAGGGTCTTGGAAGAGG+TGG - chr7.4:13680611-13680630 MS.gene020288:intron 55.0%
GCAATGGAGGAAAGGCTACG+TGG - chr7.4:13680356-13680375 MS.gene020288:intron 55.0%
TGAGCGCATGTCTGGTATCG+TGG + chr7.4:13681106-13681125 None:intergenic 55.0%
! CGTGGTCTTGGTTGGCAACT+TGG - chr7.4:13680916-13680935 MS.gene020288:CDS 55.0%
!! AAGAGGTGGTGGAGAGCTTG+AGG - chr7.4:13680625-13680644 MS.gene020288:intron 55.0%
CAGGGTCTTGGAAGAGGTGG+TGG - chr7.4:13680614-13680633 MS.gene020288:intron 60.0%
TGAAGCCCCTCCATTGGCCG+TGG + chr7.4:13679109-13679128 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 13679001 13681206 13679001 ID=MS.gene020288
chr7.4 mRNA 13679001 13681206 13679001 ID=MS.gene020288.t1;Parent=MS.gene020288
chr7.4 exon 13680883 13681206 13680883 ID=MS.gene020288.t1.exon1;Parent=MS.gene020288.t1
chr7.4 CDS 13680883 13681206 13680883 ID=cds.MS.gene020288.t1;Parent=MS.gene020288.t1
chr7.4 exon 13679549 13680121 13679549 ID=MS.gene020288.t1.exon2;Parent=MS.gene020288.t1
chr7.4 CDS 13679549 13680121 13679549 ID=cds.MS.gene020288.t1;Parent=MS.gene020288.t1
chr7.4 exon 13679001 13679045 13679001 ID=MS.gene020288.t1.exon3;Parent=MS.gene020288.t1
chr7.4 CDS 13679001 13679045 13679001 ID=cds.MS.gene020288.t1;Parent=MS.gene020288.t1
Gene Sequence

>MS.gene020288

ATGAACTATCTCTACCCAGTGAAAGAAGAGTATTTAGAAATTGAAGCAACCTCGTCATCATCGATATATGAAAGAGGAAGTGATGAGGGATCAACGGTTGTTATTCCACGGCCAATGGAGGGGCTTCATGAAGTAGGACCACCACCATTTCTCACAAAGACATTTGATGTTGTGGAGGACCCCACAACAAGTCACATAGTTTCATGGAGCAGAAGTGGTGCTAGCTTTGTTGTTTGGGATCCAAATGCTTTCTCCAGAGACCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGTTTTGTTAGACAACTCAACACCTATGTAAGTATTCTTCTCATCTCATTTGCATAAACAATATTTAACCCAATTAAGTAACCAAAAGAAAATTTTGATCTTAAGCTAAATTAATATTAATATGCACTCAAAAATTAAATCTAAGAAGATTGGATCATTTTACACTACTTTTTTGTTTGACAAATCATTTTACACTACTTTTTTGTTTGACAAATCATTTTACATTACTTGTATATTGGTTTTTTAATATTTTATATATGTTTGTGCTAAAAAAAATCCTACGCAAGCTAAATAATATTTTATTTATTAATTTTTTACCTTTTATATATGTTATCTGAATTAACAGAAAAAATATACTTCATACGATTATCTAATATTATATTAAAACAGTTGAATTAATGTATAAAACGTTTGTTATCTACTAAAGTCAGCAGATATTTTCACTGTATAGTTGCTTTATAGTAATATTTTTCTATTCATTAACCTTTTTTTTAAACTCCATAAAAAATAGTATTATCTGGAAGTGTATATGATTATTTTAATGTCACGCGTCTTGTCTTATTGTTTCCTGGATTTTTGGTTTCTGGATTTCTCCTCCTACCTGCTCCATTTGATGTTGAACTAAGATGTCACATTCATGCATCTAATAAGAAAATAGAAATCATGTTGTAATTACCATTATACCATTACCTATGGTTGAAGCAATTGCACAATTCTATATTTATTGCCATATGAGTTAGGTTTTTTATTTTAAATGTCGATGTGGGACTCAATTTTTTTGTATACAGGGTTTTAGAAAAATTGATCCTGATAAATGGGAGTTTGCAAATGAAGGATTTCTAAGAGGACATAAACATCTTTTAGCAAACATTAAGAGAAGGAGACAAACTTCACAACCTAGTACTTCACAACAACAATCATCACAAGGTCATTGTGTTGAAGTTGGTCGTTTTGGATTAGACGAAGAAATCGATCATTTGAGACGTGACAAACAAGTGTTAATGATGGAACTTGTGAAGCTTAGACAGCAACAGCAGAACACAAGATCCATTCTTCAAGCAATGGAGGAAAGGCTACGTGGAACCGAAATTAAGCAGCAACAAATGATGGCTTTTTTGGCTAGAGCTATGAAAAATCCAGCTTTTATTCAGCAATTACTTCAACAGAAGGAAAAGAGAAAGGAGATTGAAGATGCTATTACTAAGAAGAGGAGAAGGCCAATTGAGTATGGAGAATCAAGTAATGGTGGTGATGGAAGGAGCAGTGTTAGATATGGATTTGAAGTGTCAGAGTTGGAAATGCTGGCTATGGAAATGCAGGGTCTTGGAAGAGGTGGTGGAGAGCTTGAGGAAGAGATTGAGGTATTTGAGACTCATGAGAAAATGAATAAAGAACTTGATGAAGGGTTTTGGGAAGAACTTTTTAGTGAGAATTTTGAGAGTGAATTAGATATTCTAACTTCTCAAGATGATGATGATGATGAAGATGTCAATGTGTTGTCCAATCGCTTTGGTTACTTAGGTTCTAGTCCGAAATGAATTACGCTTAATCGAGATTAACCTTCTTCGTATGATGGACTGATTAAGATTCGGACTCAAAATCGATCGGACAATAGTAGCGTGGTCTTGGTTGGCAACTTGGTGTGACAGTAAAACTACCAAGCAAAAAATCTGTGGAAACCATTTAAATTTTTGTGTTTCTAACTCTTATAATATATGTCCTTTTGTAGTAACAGGTCAAGTGTATGTTTGGTATACCAATGGGTTGGTCGAAATTACAGTAGCATCGTGATTTTGCCAAACTCACCACGATACCAGACATGCGCTCAAATTTCAATTTCTCATGTTTCTCTCTTATTGATTAGGTAGGTTTTGCAGCTGTTGATTGGACAAGAACCTCTGGTAGTTGA
Protein sequence

>MS.gene020288.t1

MNYLYPVKEEYLEIEATSSSSIYERGSDEGSTVVIPRPMEGLHEVGPPPFLTKTFDVVEDPTTSHIVSWSRSGASFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKHLLANIKRRRQTSQPSTSQQQSSQGHCVEVGRFGLDEEIDHLRRDKQVLMMELVKLRQQQQNTRSILQAMEERLRGTEIKQQQMMAFLARAMKNPAFIQQLLQQKEKRKEIEDAITKKRRRPIEYGESSNGGDGRSSVRYGFEVSELEMLAMEMQGLGRGGGELEEEIEVGFAAVDWTRTSGS