Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020349.t1 | XP_013449860.1 | 98.2 | 218 | 4 | 0 | 1 | 218 | 1 | 218 | 4.20E-117 | 430.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020349.t1 | Q9SLB7 | 52.2 | 247 | 84 | 8 | 2 | 218 | 3 | 245 | 4.5e-51 | 202.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020349.t1 | A0A072U455 | 98.2 | 218 | 4 | 0 | 1 | 218 | 1 | 218 | 3.0e-117 | 430.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene020349.t1 | TF | LOB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020349.t1 | MTR_7g096530 | 98.165 | 218 | 4 | 0 | 1 | 218 | 1 | 218 | 7.27e-164 | 451 |
MS.gene020349.t1 | MTR_1g070220 | 59.649 | 228 | 59 | 10 | 1 | 218 | 1 | 205 | 4.85e-79 | 236 |
MS.gene020349.t1 | MTR_7g096610 | 70.796 | 113 | 33 | 0 | 9 | 121 | 3 | 115 | 6.03e-55 | 175 |
MS.gene020349.t1 | MTR_1g070205 | 71.429 | 105 | 30 | 0 | 14 | 118 | 12 | 116 | 2.47e-52 | 169 |
MS.gene020349.t1 | MTR_8g036105 | 67.857 | 112 | 36 | 0 | 5 | 116 | 9 | 120 | 1.10e-50 | 164 |
MS.gene020349.t1 | MTR_8g036085 | 69.903 | 103 | 31 | 0 | 14 | 116 | 23 | 125 | 9.54e-50 | 162 |
MS.gene020349.t1 | MTR_6g027710 | 67.961 | 103 | 33 | 0 | 13 | 115 | 39 | 141 | 1.13e-46 | 154 |
MS.gene020349.t1 | MTR_5g080470 | 64.000 | 100 | 36 | 0 | 9 | 108 | 2 | 101 | 1.85e-45 | 150 |
MS.gene020349.t1 | MTR_7g074990 | 66.667 | 102 | 34 | 0 | 14 | 115 | 20 | 121 | 4.96e-45 | 150 |
MS.gene020349.t1 | MTR_7g075230 | 65.487 | 113 | 37 | 2 | 6 | 116 | 4 | 116 | 2.40e-44 | 147 |
MS.gene020349.t1 | MTR_2g068760 | 56.250 | 112 | 48 | 1 | 6 | 117 | 5 | 115 | 5.79e-42 | 140 |
MS.gene020349.t1 | MTR_4g083680 | 47.500 | 160 | 74 | 5 | 1 | 159 | 1 | 151 | 5.06e-41 | 138 |
MS.gene020349.t1 | MTR_7g033800 | 60.000 | 115 | 42 | 2 | 1 | 115 | 1 | 111 | 1.95e-40 | 136 |
MS.gene020349.t1 | MTR_5g083230 | 56.604 | 106 | 45 | 1 | 10 | 115 | 2 | 106 | 1.33e-38 | 131 |
MS.gene020349.t1 | MTR_3g077240 | 57.273 | 110 | 46 | 1 | 6 | 115 | 2 | 110 | 2.67e-38 | 131 |
MS.gene020349.t1 | MTR_3g071590 | 51.613 | 124 | 58 | 2 | 11 | 133 | 5 | 127 | 6.35e-38 | 129 |
MS.gene020349.t1 | MTR_4g105170 | 63.542 | 96 | 34 | 1 | 13 | 108 | 10 | 104 | 1.41e-37 | 129 |
MS.gene020349.t1 | MTR_3g031660 | 56.075 | 107 | 45 | 2 | 10 | 115 | 2 | 107 | 1.92e-37 | 129 |
MS.gene020349.t1 | MTR_6g005070 | 56.881 | 109 | 46 | 1 | 7 | 115 | 2 | 109 | 2.54e-37 | 127 |
MS.gene020349.t1 | MTR_5g083960 | 53.333 | 105 | 48 | 1 | 11 | 115 | 36 | 139 | 2.45e-36 | 126 |
MS.gene020349.t1 | MTR_6g027700 | 60.396 | 101 | 40 | 0 | 14 | 114 | 7 | 107 | 3.07e-36 | 127 |
MS.gene020349.t1 | MTR_5g017950 | 55.357 | 112 | 49 | 1 | 8 | 119 | 2 | 112 | 5.79e-36 | 129 |
MS.gene020349.t1 | MTR_5g083010 | 51.327 | 113 | 54 | 1 | 5 | 117 | 2 | 113 | 9.95e-36 | 124 |
MS.gene020349.t1 | MTR_6g005080 | 54.128 | 109 | 49 | 1 | 7 | 115 | 3 | 110 | 5.13e-35 | 121 |
MS.gene020349.t1 | MTR_3g452660 | 54.630 | 108 | 48 | 1 | 9 | 116 | 2 | 108 | 2.71e-34 | 124 |
MS.gene020349.t1 | MTR_3g073690 | 55.046 | 109 | 48 | 1 | 8 | 116 | 3 | 110 | 3.93e-34 | 121 |
MS.gene020349.t1 | MTR_3g094690 | 53.333 | 105 | 48 | 1 | 11 | 115 | 44 | 147 | 5.77e-34 | 121 |
MS.gene020349.t1 | MTR_3g071420 | 50.000 | 112 | 55 | 1 | 1 | 112 | 1 | 111 | 7.86e-34 | 120 |
MS.gene020349.t1 | MTR_5g075020 | 56.250 | 112 | 48 | 1 | 4 | 115 | 33 | 143 | 9.42e-34 | 120 |
MS.gene020349.t1 | MTR_5g075020 | 56.250 | 112 | 48 | 1 | 4 | 115 | 37 | 147 | 1.79e-33 | 120 |
MS.gene020349.t1 | MTR_4g060950 | 50.000 | 114 | 55 | 2 | 3 | 115 | 13 | 125 | 2.45e-33 | 119 |
MS.gene020349.t1 | MTR_2g093310 | 52.427 | 103 | 48 | 1 | 13 | 115 | 32 | 133 | 4.14e-33 | 118 |
MS.gene020349.t1 | MTR_8g040900 | 56.897 | 116 | 42 | 2 | 1 | 116 | 1 | 108 | 6.21e-33 | 119 |
MS.gene020349.t1 | MTR_3g094690 | 53.333 | 105 | 47 | 2 | 11 | 115 | 44 | 146 | 3.63e-32 | 117 |
MS.gene020349.t1 | MTR_7g028905 | 43.363 | 113 | 63 | 1 | 13 | 125 | 4 | 115 | 4.84e-30 | 108 |
MS.gene020349.t1 | MTR_5g093010 | 42.742 | 124 | 69 | 2 | 15 | 137 | 6 | 128 | 1.55e-29 | 107 |
MS.gene020349.t1 | MTR_1g095850 | 50.495 | 101 | 49 | 1 | 15 | 115 | 73 | 172 | 2.93e-29 | 109 |
MS.gene020349.t1 | MTR_8g079660 | 43.689 | 103 | 57 | 1 | 14 | 116 | 8 | 109 | 1.60e-23 | 95.1 |
MS.gene020349.t1 | MTR_4g107450 | 41.509 | 106 | 61 | 1 | 10 | 115 | 6 | 110 | 3.70e-23 | 94.7 |
MS.gene020349.t1 | MTR_8g079620 | 41.748 | 103 | 59 | 1 | 14 | 116 | 8 | 109 | 5.90e-21 | 87.8 |
MS.gene020349.t1 | MTR_8g017090 | 40.566 | 106 | 62 | 1 | 11 | 116 | 9 | 113 | 1.85e-20 | 87.8 |
MS.gene020349.t1 | MTR_2g100020 | 37.383 | 107 | 66 | 1 | 10 | 116 | 15 | 120 | 4.13e-20 | 86.3 |
MS.gene020349.t1 | MTR_6g011230 | 32.824 | 131 | 87 | 1 | 11 | 141 | 8 | 137 | 2.77e-19 | 82.4 |
MS.gene020349.t1 | MTR_6g011250 | 30.645 | 186 | 117 | 6 | 15 | 199 | 10 | 184 | 1.69e-18 | 80.1 |
MS.gene020349.t1 | MTR_6g011200 | 35.780 | 109 | 68 | 2 | 15 | 122 | 10 | 117 | 2.07e-17 | 78.6 |
MS.gene020349.t1 | MTR_8g079580 | 39.806 | 103 | 60 | 2 | 14 | 115 | 8 | 109 | 4.33e-17 | 77.4 |
MS.gene020349.t1 | MTR_4g099230 | 35.780 | 109 | 68 | 2 | 15 | 122 | 3 | 110 | 7.46e-16 | 72.4 |
MS.gene020349.t1 | MTR_5g085390 | 33.654 | 104 | 67 | 2 | 15 | 117 | 10 | 112 | 6.31e-13 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020349.t1 | AT2G42430 | 55.422 | 249 | 76 | 9 | 1 | 218 | 1 | 245 | 1.61e-79 | 238 |
MS.gene020349.t1 | AT3G58190 | 62.205 | 127 | 40 | 1 | 14 | 132 | 11 | 137 | 1.63e-53 | 171 |
MS.gene020349.t1 | AT3G03760 | 76.699 | 103 | 24 | 0 | 13 | 115 | 50 | 152 | 1.09e-51 | 168 |
MS.gene020349.t1 | AT4G00210 | 66.964 | 112 | 37 | 0 | 5 | 116 | 2 | 113 | 2.01e-51 | 166 |
MS.gene020349.t1 | AT2G45420 | 76.000 | 100 | 24 | 0 | 17 | 116 | 40 | 139 | 1.84e-50 | 165 |
MS.gene020349.t1 | AT2G42440 | 61.600 | 125 | 40 | 1 | 9 | 125 | 2 | 126 | 1.94e-50 | 164 |
MS.gene020349.t1 | AT2G31310 | 61.404 | 114 | 44 | 0 | 10 | 123 | 3 | 116 | 3.18e-50 | 162 |
MS.gene020349.t1 | AT5G06080 | 60.331 | 121 | 47 | 1 | 12 | 132 | 5 | 124 | 1.56e-47 | 154 |
MS.gene020349.t1 | AT4G00220 | 69.000 | 100 | 31 | 0 | 17 | 116 | 20 | 119 | 1.30e-45 | 151 |
MS.gene020349.t1 | AT2G45410 | 68.000 | 100 | 32 | 0 | 17 | 116 | 19 | 118 | 8.12e-45 | 148 |
MS.gene020349.t1 | AT5G63090 | 58.120 | 117 | 45 | 2 | 1 | 117 | 1 | 113 | 3.60e-39 | 133 |
MS.gene020349.t1 | AT5G63090 | 58.120 | 117 | 45 | 2 | 1 | 117 | 1 | 113 | 3.60e-39 | 133 |
MS.gene020349.t1 | AT5G63090 | 58.120 | 117 | 45 | 2 | 1 | 117 | 1 | 113 | 3.60e-39 | 133 |
MS.gene020349.t1 | AT5G63090 | 58.120 | 117 | 45 | 2 | 1 | 117 | 1 | 113 | 3.60e-39 | 133 |
MS.gene020349.t1 | AT3G27650 | 56.481 | 108 | 46 | 1 | 8 | 115 | 33 | 139 | 3.63e-38 | 130 |
MS.gene020349.t1 | AT2G30130 | 57.009 | 107 | 44 | 2 | 10 | 115 | 3 | 108 | 8.14e-37 | 127 |
MS.gene020349.t1 | AT1G31320 | 58.696 | 92 | 37 | 1 | 10 | 101 | 9 | 99 | 4.49e-36 | 125 |
MS.gene020349.t1 | AT2G30340 | 46.970 | 132 | 68 | 2 | 1 | 131 | 39 | 169 | 5.75e-36 | 127 |
MS.gene020349.t1 | AT2G30340 | 46.970 | 132 | 68 | 2 | 1 | 131 | 40 | 170 | 7.21e-36 | 127 |
MS.gene020349.t1 | AT1G07900 | 53.398 | 103 | 47 | 1 | 13 | 115 | 32 | 133 | 1.53e-34 | 122 |
MS.gene020349.t1 | AT5G66870 | 39.884 | 173 | 88 | 4 | 9 | 180 | 2 | 159 | 7.90e-34 | 123 |
MS.gene020349.t1 | AT2G28500 | 53.398 | 103 | 47 | 1 | 13 | 115 | 54 | 155 | 1.01e-33 | 121 |
MS.gene020349.t1 | AT3G11090 | 46.457 | 127 | 66 | 2 | 6 | 131 | 3 | 128 | 1.72e-33 | 118 |
MS.gene020349.t1 | AT1G65620 | 59.091 | 110 | 44 | 1 | 7 | 116 | 2 | 110 | 9.23e-33 | 117 |
MS.gene020349.t1 | AT1G65620 | 59.091 | 110 | 44 | 1 | 7 | 116 | 2 | 110 | 9.23e-33 | 117 |
MS.gene020349.t1 | AT1G65620 | 59.091 | 110 | 44 | 1 | 7 | 116 | 2 | 110 | 9.23e-33 | 117 |
MS.gene020349.t1 | AT1G65620 | 59.091 | 110 | 44 | 1 | 7 | 116 | 2 | 110 | 9.23e-33 | 117 |
MS.gene020349.t1 | AT1G65620 | 59.091 | 110 | 44 | 1 | 7 | 116 | 2 | 110 | 9.23e-33 | 117 |
MS.gene020349.t1 | AT1G16530 | 51.852 | 108 | 50 | 2 | 11 | 117 | 11 | 117 | 9.86e-33 | 116 |
MS.gene020349.t1 | AT2G23660 | 50.485 | 103 | 50 | 1 | 13 | 115 | 4 | 105 | 1.97e-31 | 117 |
MS.gene020349.t1 | AT2G23660 | 50.485 | 103 | 50 | 1 | 13 | 115 | 4 | 105 | 1.97e-31 | 117 |
MS.gene020349.t1 | AT2G23660 | 50.485 | 103 | 50 | 1 | 13 | 115 | 4 | 105 | 1.97e-31 | 117 |
MS.gene020349.t1 | AT2G40470 | 56.190 | 105 | 45 | 1 | 11 | 115 | 17 | 120 | 3.45e-30 | 110 |
MS.gene020349.t1 | AT2G40470 | 56.190 | 105 | 45 | 1 | 11 | 115 | 42 | 145 | 5.29e-30 | 111 |
MS.gene020349.t1 | AT3G26660 | 44.118 | 102 | 56 | 1 | 15 | 116 | 6 | 106 | 5.29e-29 | 105 |
MS.gene020349.t1 | AT3G26620 | 44.118 | 102 | 56 | 1 | 15 | 116 | 6 | 106 | 8.49e-29 | 105 |
MS.gene020349.t1 | AT3G50510 | 46.667 | 105 | 55 | 1 | 12 | 116 | 10 | 113 | 1.41e-24 | 96.3 |
MS.gene020349.t1 | AT3G50510 | 46.667 | 105 | 55 | 1 | 12 | 116 | 10 | 113 | 1.41e-24 | 96.3 |
MS.gene020349.t1 | AT3G47870 | 38.679 | 106 | 64 | 1 | 10 | 115 | 32 | 136 | 1.67e-20 | 88.2 |
MS.gene020349.t1 | AT3G13850 | 42.157 | 102 | 58 | 1 | 15 | 116 | 37 | 137 | 2.60e-20 | 86.7 |
MS.gene020349.t1 | AT5G35900 | 38.532 | 109 | 66 | 1 | 15 | 123 | 6 | 113 | 4.11e-18 | 79.7 |
MS.gene020349.t1 | AT1G72980 | 37.037 | 108 | 67 | 1 | 8 | 115 | 7 | 113 | 2.04e-17 | 77.8 |
MS.gene020349.t1 | AT1G06280 | 41.772 | 79 | 37 | 2 | 15 | 89 | 25 | 98 | 3.09e-14 | 69.3 |
MS.gene020349.t1 | AT4G22700 | 42.529 | 87 | 45 | 3 | 15 | 100 | 6 | 88 | 1.94e-12 | 63.9 |
Find 31 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCATGTAAGTTGGACAAAA+TGG | 0.286192 | 7.2:+13727048 | None:intergenic |
AGTGAACTTTGAGGAGATAT+AGG | 0.327596 | 7.2:+13727024 | None:intergenic |
TGAATAGCTGCAAATCTTGC+AGG | 0.329259 | 7.2:+13727885 | None:intergenic |
ATCAATATGGCTTCTTCAAA+TGG | 0.350219 | 7.2:-13728011 | None:intergenic |
GCAGCTATTCATAAAGTGTT+TGG | 0.364830 | 7.2:-13727873 | MS.gene020349:CDS |
TGTTGTCACAATTGCTTATG+AGG | 0.389067 | 7.2:-13727793 | MS.gene020349:CDS |
CGTATTAGAGACCCTGTATA+TGG | 0.390387 | 7.2:-13727762 | MS.gene020349:CDS |
GTGAACTTTGAGGAGATATA+GGG | 0.398352 | 7.2:+13727025 | None:intergenic |
TATGCAGGTAGCATGCTTGC+AGG | 0.403290 | 7.2:-13727175 | MS.gene020349:intron |
GGAAACAATAATAATGTTGC+TGG | 0.425208 | 7.2:-13727090 | MS.gene020349:CDS |
GATATAGGGTTCATGTAAGT+TGG | 0.426071 | 7.2:+13727039 | None:intergenic |
GATGACTCAAGTGAACTTTG+AGG | 0.443078 | 7.2:+13727015 | None:intergenic |
TGAGAGACACAGCCATATAC+AGG | 0.444019 | 7.2:+13727750 | None:intergenic |
TCTTCAAATGGAACTAGCTC+TGG | 0.444575 | 7.2:-13727999 | MS.gene020349:CDS |
TCTTATAATTATTACAACCT+TGG | 0.449925 | 7.2:+13726914 | None:intergenic |
CAATAATAATGATCATGACT+TGG | 0.461238 | 7.2:-13726875 | MS.gene020349:CDS |
GAGAATAATAATCAATGGAC+AGG | 0.471919 | 7.2:-13727111 | MS.gene020349:CDS |
ATTGTGTACCTGTTGTTGTA+AGG | 0.501180 | 7.2:+13727719 | None:intergenic |
CATAGCAGCAGCATGAATGA+TGG | 0.514545 | 7.2:-13726985 | MS.gene020349:CDS |
ACATAGAGAATAATAATCAA+TGG | 0.518649 | 7.2:-13727116 | MS.gene020349:CDS |
CCTTGTTCTGAGCAAAAGTA+AGG | 0.518854 | 7.2:+13727909 | None:intergenic |
AATGGAACTAGCTCTGGAAC+TGG | 0.534733 | 7.2:-13727993 | MS.gene020349:CDS |
AGAGAAGATTTCTCATTCCA+AGG | 0.536983 | 7.2:-13726931 | MS.gene020349:CDS |
AATAATAATGATCATGACTT+GGG | 0.555968 | 7.2:-13726874 | MS.gene020349:CDS |
GCTTCACAACGTTCATGAGC+TGG | 0.566405 | 7.2:+13727816 | None:intergenic |
TCTGGAACTGGTTCTCCTTG+TGG | 0.567515 | 7.2:-13727981 | MS.gene020349:CDS |
AAATAGCACTTAGGATGATG+AGG | 0.594424 | 7.2:-13726840 | MS.gene020349:CDS |
GAATAGCTGCAAATCTTGCA+GGG | 0.610026 | 7.2:+13727886 | None:intergenic |
AGGAACTTGCATGCTCCACA+AGG | 0.611585 | 7.2:+13727966 | None:intergenic |
AATTGCAAGAAATAGCACTT+AGG | 0.616097 | 7.2:-13726849 | MS.gene020349:CDS |
GAGAGACACAGCCATATACA+GGG | 0.671769 | 7.2:+13727751 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATATATTAAAAAAATAA+AGG | + | chr7.2:13727429-13727448 | None:intergenic | 0.0% |
!! | ATATATATTAAAAAAATAAA+GGG | + | chr7.2:13727428-13727447 | None:intergenic | 0.0% |
!! | TTTAATATATATTAGAAATG+TGG | - | chr7.2:13727436-13727455 | MS.gene020349:intron | 10.0% |
!! | AATAAATAATATTCTTTGAC+TGG | + | chr7.2:13727530-13727549 | None:intergenic | 15.0% |
!! | AATTATATAAACTTCACATT+AGG | - | chr7.2:13727149-13727168 | MS.gene020349:CDS | 15.0% |
!! | AATAATAATGATCATGACTT+GGG | - | chr7.2:13727965-13727984 | MS.gene020349:CDS | 20.0% |
!! | ACATAGAGAATAATAATCAA+TGG | - | chr7.2:13727723-13727742 | MS.gene020349:intron | 20.0% |
!! | TCTTATAATTATTACAACCT+TGG | + | chr7.2:13727928-13727947 | None:intergenic | 20.0% |
!!! | AGTTTTCTTTTTAATTATGC+AGG | - | chr7.2:13727649-13727668 | MS.gene020349:intron | 20.0% |
! | AGTACCAATAGAATTCATTA+AGG | + | chr7.2:13727620-13727639 | None:intergenic | 25.0% |
! | ATCACCTTAATGAATTCTAT+TGG | - | chr7.2:13727613-13727632 | MS.gene020349:intron | 25.0% |
! | CAATAATAATGATCATGACT+TGG | - | chr7.2:13727964-13727983 | MS.gene020349:CDS | 25.0% |
!!! | AGTTCTAAAAAAAACTTTGG+TGG | + | chr7.2:13727374-13727393 | None:intergenic | 25.0% |
!!! | GCAAGTTCTAAAAAAAACTT+TGG | + | chr7.2:13727377-13727396 | None:intergenic | 25.0% |
!!! | TTCTAATTAAAGGTGTTGTT+AGG | - | chr7.2:13727263-13727282 | MS.gene020349:intron | 25.0% |
AATTGCAAGAAATAGCACTT+AGG | - | chr7.2:13727990-13728009 | MS.gene020349:CDS | 30.0% | |
GAGAATAATAATCAATGGAC+AGG | - | chr7.2:13727728-13727747 | MS.gene020349:CDS | 30.0% | |
GCACTAACACTTCTAATTAA+AGG | - | chr7.2:13727253-13727272 | MS.gene020349:intron | 30.0% | |
GGAAACAATAATAATGTTGC+TGG | - | chr7.2:13727749-13727768 | MS.gene020349:CDS | 30.0% | |
! | TTCATGTAAGTTGGACAAAA+TGG | + | chr7.2:13727794-13727813 | None:intergenic | 30.0% |
AAATAGCACTTAGGATGATG+AGG | - | chr7.2:13727999-13728018 | MS.gene020349:CDS | 35.0% | |
AAGAGCCTTAAGAAAAAGAC+AGG | + | chr7.2:13727493-13727512 | None:intergenic | 35.0% | |
AGAGAAGATTTCTCATTCCA+AGG | - | chr7.2:13727908-13727927 | MS.gene020349:CDS | 35.0% | |
ATGTGATCAATCACATGTGT+AGG | + | chr7.2:13727312-13727331 | None:intergenic | 35.0% | |
ATTGTGTACCTGTTGTTGTA+AGG | + | chr7.2:13727123-13727142 | None:intergenic | 35.0% | |
GATATAGGGTTCATGTAAGT+TGG | + | chr7.2:13727803-13727822 | None:intergenic | 35.0% | |
TAAGGTGCAAAAATGCAATC+AGG | + | chr7.2:13726915-13726934 | None:intergenic | 35.0% | |
TGTTGTCACAATTGCTTATG+AGG | - | chr7.2:13727046-13727065 | MS.gene020349:CDS | 35.0% | |
! | AGTGAACTTTGAGGAGATAT+AGG | + | chr7.2:13727818-13727837 | None:intergenic | 35.0% |
! | CATTTTTGCCTTACAACAAC+AGG | - | chr7.2:13727112-13727131 | MS.gene020349:CDS | 35.0% |
! | CTACTCCTGTCTTTTTCTTA+AGG | - | chr7.2:13727485-13727504 | MS.gene020349:intron | 35.0% |
! | GCAGCTATTCATAAAGTGTT+TGG | - | chr7.2:13726966-13726985 | MS.gene020349:CDS | 35.0% |
! | GTGAACTTTGAGGAGATATA+GGG | + | chr7.2:13727817-13727836 | None:intergenic | 35.0% |
AAGGCTCTTTGATGCTTCAA+GGG | - | chr7.2:13727504-13727523 | MS.gene020349:intron | 40.0% | |
ACTACACTTACTCACGTATC+TGG | - | chr7.2:13727231-13727250 | MS.gene020349:intron | 40.0% | |
AGAAAAAGACAGGAGTAGTG+TGG | + | chr7.2:13727483-13727502 | None:intergenic | 40.0% | |
CGTATTAGAGACCCTGTATA+TGG | - | chr7.2:13727077-13727096 | MS.gene020349:CDS | 40.0% | |
GAATAGCTGCAAATCTTGCA+GGG | + | chr7.2:13726956-13726975 | None:intergenic | 40.0% | |
GATGACTCAAGTGAACTTTG+AGG | + | chr7.2:13727827-13727846 | None:intergenic | 40.0% | |
TAAGGCTCTTTGATGCTTCA+AGG | - | chr7.2:13727503-13727522 | MS.gene020349:intron | 40.0% | |
TCTTCAAATGGAACTAGCTC+TGG | - | chr7.2:13726840-13726859 | MS.gene020349:CDS | 40.0% | |
TGAATAGCTGCAAATCTTGC+AGG | + | chr7.2:13726957-13726976 | None:intergenic | 40.0% | |
! | CAGGTGCACATTTTCTTCTA+AGG | + | chr7.2:13726896-13726915 | None:intergenic | 40.0% |
! | CCTTGTTCTGAGCAAAAGTA+AGG | + | chr7.2:13726933-13726952 | None:intergenic | 40.0% |
!! | CCTTACTTTTGCTCAGAACA+AGG | - | chr7.2:13726930-13726949 | MS.gene020349:CDS | 40.0% |
CATAGCAGCAGCATGAATGA+TGG | - | chr7.2:13727854-13727873 | MS.gene020349:CDS | 45.0% | |
GAGAGACACAGCCATATACA+GGG | + | chr7.2:13727091-13727110 | None:intergenic | 45.0% | |
TGAGAGACACAGCCATATAC+AGG | + | chr7.2:13727092-13727111 | None:intergenic | 45.0% | |
!! | AATGGAACTAGCTCTGGAAC+TGG | - | chr7.2:13726846-13726865 | MS.gene020349:CDS | 45.0% |
!! | TATATATTAAAAAAATAAAG+GGG | + | chr7.2:13727427-13727446 | None:intergenic | 5.0% |
AGGAACTTGCATGCTCCACA+AGG | + | chr7.2:13726876-13726895 | None:intergenic | 50.0% | |
GCTTCACAACGTTCATGAGC+TGG | + | chr7.2:13727026-13727045 | None:intergenic | 50.0% | |
TATGCAGGTAGCATGCTTGC+AGG | - | chr7.2:13727664-13727683 | MS.gene020349:intron | 50.0% | |
! | TCTGGAACTGGTTCTCCTTG+TGG | - | chr7.2:13726858-13726877 | MS.gene020349:CDS | 50.0% |
GTTAGGTGTTCGACACGTGC+AGG | - | chr7.2:13727280-13727299 | MS.gene020349:intron | 55.0% | |
AGGTGTTCGACACGTGCAGG+CGG | - | chr7.2:13727283-13727302 | MS.gene020349:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 13726834 | 13728027 | 13726834 | ID=MS.gene020349 |
chr7.2 | mRNA | 13726834 | 13728027 | 13726834 | ID=MS.gene020349.t1;Parent=MS.gene020349 |
chr7.2 | exon | 13727728 | 13728027 | 13727728 | ID=MS.gene020349.t1.exon1;Parent=MS.gene020349.t1 |
chr7.2 | CDS | 13727728 | 13728027 | 13727728 | ID=cds.MS.gene020349.t1;Parent=MS.gene020349.t1 |
chr7.2 | exon | 13726834 | 13727190 | 13726834 | ID=MS.gene020349.t1.exon2;Parent=MS.gene020349.t1 |
chr7.2 | CDS | 13726834 | 13727190 | 13726834 | ID=cds.MS.gene020349.t1;Parent=MS.gene020349.t1 |
Gene Sequence |
Protein sequence |