Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020499.t1 | XP_003630914.1 | 95.5 | 465 | 14 | 3 | 1 | 460 | 1 | 463 | 2.40E-207 | 731.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020499.t1 | Q9ZU93 | 59.1 | 467 | 171 | 4 | 1 | 457 | 1 | 457 | 2.1e-130 | 467.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020499.t1 | G7LAI2 | 95.5 | 465 | 14 | 3 | 1 | 460 | 1 | 463 | 1.8e-207 | 731.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene020499.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020499.t1 | MTR_8g104930 | 94.647 | 467 | 14 | 5 | 1 | 460 | 1 | 463 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020499.t1 | AT2G01650 | 61.684 | 475 | 146 | 7 | 1 | 457 | 1 | 457 | 0.0 | 550 |
| MS.gene020499.t1 | AT2G01650 | 61.684 | 475 | 146 | 7 | 1 | 457 | 1 | 457 | 0.0 | 550 |
| MS.gene020499.t1 | AT2G01650 | 59.649 | 399 | 125 | 7 | 1 | 381 | 1 | 381 | 1.27e-153 | 441 |
Find 101 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTGGTACTTATGTTTC+AGG | 0.140987 | 4.1:+1920256 | MS.gene020499:CDS |
| GTAGGTTTGGGTTTGGGATT+AGG | 0.175605 | 4.1:-1919959 | None:intergenic |
| CGAAAGGGTTGTTTACAAAT+TGG | 0.223879 | 4.1:-1920115 | None:intergenic |
| CCCACAGCTTCTTTAATCTT+TGG | 0.237677 | 4.1:-1920379 | None:intergenic |
| CTAGGGGCTTGAACTTGATT+AGG | 0.247442 | 4.1:-1922180 | None:intergenic |
| GGTGTTAAAGTTTCTCTCTT+TGG | 0.252715 | 4.1:-1920562 | None:intergenic |
| TAGGTTTGGGTTTGGGATTA+GGG | 0.259606 | 4.1:-1919958 | None:intergenic |
| GATACACAAGAACTATTATT+AGG | 0.271026 | 4.1:+1921706 | MS.gene020499:CDS |
| TGAGAAGAGAAGCTGAATTA+AGG | 0.273073 | 4.1:+1921607 | MS.gene020499:CDS |
| GGTGGAGTAGGTTTGGGTTT+GGG | 0.283318 | 4.1:-1919965 | None:intergenic |
| GTCTTCTTCCTCTATCGTTT+TGG | 0.294303 | 4.1:-1922143 | None:intergenic |
| ATCAGTGAACCACTTGTAAA+TGG | 0.308403 | 4.1:+1922250 | MS.gene020499:CDS |
| GAAGCTGTGGGCGAGGTTAT+TGG | 0.314917 | 4.1:+1920391 | MS.gene020499:CDS |
| ACTGAATTGGAGATTTCTAT+TGG | 0.324761 | 4.1:+1920241 | MS.gene020499:CDS |
| TGCTTTAAAAGAATCATGTT+TGG | 0.332951 | 4.1:+1922048 | MS.gene020499:CDS |
| AAACAACAGAATCTGTTTCT+AGG | 0.337000 | 4.1:-1922198 | None:intergenic |
| CGGTGGAGTAGGTTTGGGTT+TGG | 0.338165 | 4.1:-1919966 | None:intergenic |
| TTCCTAAACTTAACATTCTC+AGG | 0.339946 | 4.1:-1920340 | None:intergenic |
| GTTGAATTGCTGAGTTTGTT+AGG | 0.350477 | 4.1:+1920418 | MS.gene020499:CDS |
| TTCTGAGTCTAATACTGAAT+TGG | 0.356720 | 4.1:+1920228 | MS.gene020499:CDS |
| TTCAGCTGAACGTTTGTAGA+AGG | 0.363666 | 4.1:-1921580 | None:intergenic |
| TCTTCTCAAAGATCTCAAAA+TGG | 0.368840 | 4.1:+1920067 | MS.gene020499:CDS |
| AGCGATCGGTGGAGTAGGTT+TGG | 0.369595 | 4.1:-1919972 | None:intergenic |
| ATGTTAAGTTTAGGAAGATT+AGG | 0.375559 | 4.1:+1920347 | MS.gene020499:CDS |
| CAAGAAAGCAATTGTGTTGT+TGG | 0.381393 | 4.1:+1920516 | MS.gene020499:CDS |
| GCGATCGGTGGAGTAGGTTT+GGG | 0.384107 | 4.1:-1919971 | None:intergenic |
| TGGAGAGACATGGGCATTCA+TGG | 0.387114 | 4.1:+1920462 | MS.gene020499:CDS |
| TAGGGGCTTGAACTTGATTA+GGG | 0.388598 | 4.1:-1922179 | None:intergenic |
| TTTGAACTTAAAGAGGAGAA+TGG | 0.410145 | 4.1:+1920442 | MS.gene020499:CDS |
| GGGGTAGGAATGGAATTTGC+AGG | 0.422062 | 4.1:-1919914 | None:intergenic |
| TCAGATGGAGTTGTACTTCA+AGG | 0.423651 | 4.1:+1921738 | MS.gene020499:CDS |
| AACCTGAGAATGTTAAGTTT+AGG | 0.430889 | 4.1:+1920338 | MS.gene020499:CDS |
| AAAGGCCAAGGTCGAGTCTT+GGG | 0.431284 | 4.1:+1919863 | MS.gene020499:CDS |
| ATTGTTGAGGAATATTGTTA+AGG | 0.431444 | 4.1:+1920315 | MS.gene020499:CDS |
| AACAACAGAATCTGTTTCTA+GGG | 0.439799 | 4.1:-1922197 | None:intergenic |
| GAACGTTTGTAGAAGGAATC+TGG | 0.447302 | 4.1:-1921573 | None:intergenic |
| CTATTGGTACTTATGTTTCA+GGG | 0.450380 | 4.1:+1920257 | MS.gene020499:CDS |
| TGTGTTGTTGGAACCACAAT+TGG | 0.459857 | 4.1:+1920528 | MS.gene020499:CDS |
| GGCTACTTTCTCAGCGGAAA+TGG | 0.460122 | 4.1:-1920587 | None:intergenic |
| ATCCCATGTTTCCCAAAAGC+AGG | 0.471596 | 4.1:+1922112 | MS.gene020499:CDS |
| TCTGAGAAGGACGAGGGGTA+GGG | 0.472504 | 4.1:-1919934 | None:intergenic |
| TCTTCTTCTGGTAAATTCAA+AGG | 0.474590 | 4.1:+1919845 | MS.gene020499:CDS |
| CAAAGGCCAAGGTCGAGTCT+TGG | 0.475772 | 4.1:+1919862 | MS.gene020499:CDS |
| TTCTGAGAAGGACGAGGGGT+AGG | 0.483289 | 4.1:-1919935 | None:intergenic |
| CTGAGAAGGACGAGGGGTAG+GGG | 0.483771 | 4.1:-1919933 | None:intergenic |
| GTTAGGATTTGAACTTAAAG+AGG | 0.484850 | 4.1:+1920435 | MS.gene020499:CDS |
| AACCTCGTCCTCGGATCGAA+AGG | 0.485306 | 4.1:-1920131 | None:intergenic |
| ACCAACTACTGCTCTGTATG+AGG | 0.485891 | 4.1:+1921779 | MS.gene020499:CDS |
| TTCAAGGTGTATTTGCTCCA+TGG | 0.496010 | 4.1:+1921754 | MS.gene020499:CDS |
| TAAGTTTAGGAAGATTAGGA+TGG | 0.496165 | 4.1:+1920351 | MS.gene020499:CDS |
| ACCCTTTCGATCCGAGGACG+AGG | 0.506482 | 4.1:+1920129 | MS.gene020499:CDS |
| CTACAAACGTTCAGCTGAAG+AGG | 0.515065 | 4.1:+1921584 | MS.gene020499:CDS |
| TCAAGGTGTATTTGCTCCAT+GGG | 0.515302 | 4.1:+1921755 | MS.gene020499:CDS |
| GAAGTGACGAATGAATCAAA+TGG | 0.527530 | 4.1:-1920046 | None:intergenic |
| ACCTCGTCCTCGGATCGAAA+GGG | 0.530145 | 4.1:-1920130 | None:intergenic |
| GTGTTCAGAAACCTCGTCCT+CGG | 0.530401 | 4.1:-1920140 | None:intergenic |
| ATATTGTTCTTAAATTGTTG+AGG | 0.534264 | 4.1:+1920302 | MS.gene020499:CDS |
| AAGCCATCTGCGGGTTTGCG+TGG | 0.535106 | 4.1:-1920019 | None:intergenic |
| TTGCTTTGATCTGAAGCGAT+CGG | 0.538206 | 4.1:-1919986 | None:intergenic |
| CTTTGATCTGAAGCGATCGG+TGG | 0.538600 | 4.1:-1919983 | None:intergenic |
| AGAGCAGTAGTTGGTTCCCA+TGG | 0.544179 | 4.1:-1921771 | None:intergenic |
| ACACGCCGTTGAACAACTAC+AGG | 0.546054 | 4.1:-1922088 | None:intergenic |
| TCTGGTAAATTCAAAGGCCA+AGG | 0.550240 | 4.1:+1919851 | MS.gene020499:CDS |
| GAAGGACGAGGGGTAGGGGT+AGG | 0.552141 | 4.1:-1919929 | None:intergenic |
| TGATTAGGGCAGAAGGCACC+AGG | 0.553360 | 4.1:-1922165 | None:intergenic |
| AAATTAACTTTCTCCTCAGT+AGG | 0.555265 | 4.1:-1920490 | None:intergenic |
| TCCAAAGATTAAAGAAGCTG+TGG | 0.555466 | 4.1:+1920378 | MS.gene020499:CDS |
| GATTAAAGAAGCTGTGGGCG+AGG | 0.555589 | 4.1:+1920384 | MS.gene020499:CDS |
| ACGAGGGGTAGGGGTAGGAA+TGG | 0.557142 | 4.1:-1919924 | None:intergenic |
| TTGGGATTAGGGTTCTGAGA+AGG | 0.565323 | 4.1:-1919947 | None:intergenic |
| AAGTTTAGGAAGATTAGGAT+GGG | 0.568581 | 4.1:+1920352 | MS.gene020499:CDS |
| GGAGTATCTTGAACCAATTG+TGG | 0.569841 | 4.1:-1920541 | None:intergenic |
| AATGGATCAAAGCCATCTGC+GGG | 0.571592 | 4.1:-1920028 | None:intergenic |
| AATGCTTAACCATTTACAAG+TGG | 0.577084 | 4.1:-1922259 | None:intergenic |
| TCTGAAGCGATCGGTGGAGT+AGG | 0.577813 | 4.1:-1919977 | None:intergenic |
| TTGAACTTGATTAGGGCAGA+AGG | 0.585290 | 4.1:-1922172 | None:intergenic |
| TAAACAACCCTTTCGATCCG+AGG | 0.585535 | 4.1:+1920123 | MS.gene020499:CDS |
| GATGTAAAAGACAAGATGAA+AGG | 0.585648 | 4.1:+1919782 | MS.gene020499:CDS |
| GTTTCAGGGAATCCGTCTGA+AGG | 0.588125 | 4.1:+1920271 | MS.gene020499:CDS |
| AAGAACCCAAGACTCGACCT+TGG | 0.590087 | 4.1:-1919868 | None:intergenic |
| AAGAGGAGAATGGAGAGACA+TGG | 0.592517 | 4.1:+1920452 | MS.gene020499:CDS |
| ACCTCATACAGAGCAGTAGT+TGG | 0.594344 | 4.1:-1921780 | None:intergenic |
| TGCATCCTGTAGTTGTTCAA+CGG | 0.598631 | 4.1:+1922083 | MS.gene020499:CDS |
| TTAGGGTTCTGAGAAGGACG+AGG | 0.599978 | 4.1:-1919941 | None:intergenic |
| AACGATAGAGGAAGAAGACC+TGG | 0.600898 | 4.1:+1922147 | MS.gene020499:CDS |
| AAATGGATCAAAGCCATCTG+CGG | 0.612029 | 4.1:-1920029 | None:intergenic |
| AAACCACGCAAACCCGCAGA+TGG | 0.614242 | 4.1:+1920016 | MS.gene020499:CDS |
| TCCCATGTTTCCCAAAAGCA+GGG | 0.615985 | 4.1:+1922113 | MS.gene020499:CDS |
| AGAGGAGAATGGAGAGACAT+GGG | 0.617493 | 4.1:+1920453 | MS.gene020499:CDS |
| ACTTTCTCAGCGGAAATGGT+AGG | 0.622064 | 4.1:-1920583 | None:intergenic |
| CCAAAGATTAAAGAAGCTGT+GGG | 0.630530 | 4.1:+1920379 | MS.gene020499:CDS |
| ACAACAGAATCTGTTTCTAG+GGG | 0.631709 | 4.1:-1922196 | None:intergenic |
| TAGGGTTCTGAGAAGGACGA+GGG | 0.637909 | 4.1:-1919940 | None:intergenic |
| TTCCGCTGAGAAAGTAGCCG+AGG | 0.648892 | 4.1:+1920591 | MS.gene020499:CDS |
| GCTGTGGGCGAGGTTATTGG+TGG | 0.660528 | 4.1:+1920394 | MS.gene020499:CDS |
| ATTCATGGAGGTTCCTACTG+AGG | 0.674873 | 4.1:+1920477 | MS.gene020499:CDS |
| ATATCAACAGAACCTTCAGA+CGG | 0.678273 | 4.1:-1920283 | None:intergenic |
| GGACGAGGTTTCTGAACACG+TGG | 0.689204 | 4.1:+1920144 | MS.gene020499:CDS |
| GGCCTCGGCTACTTTCTCAG+CGG | 0.713672 | 4.1:-1920593 | None:intergenic |
| AGAGACATGGGCATTCATGG+AGG | 0.723039 | 4.1:+1920465 | MS.gene020499:CDS |
| AGGGTTCTGAGAAGGACGAG+GGG | 0.727880 | 4.1:-1919939 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTTTTTTATTGTATT+AGG | - | chr4.1:1921036-1921055 | None:intergenic | 10.0% |
| !! | AAGTTAAAATCAAATAGAAA+AGG | - | chr4.1:1921810-1921829 | None:intergenic | 15.0% |
| !! | ACTAAAATACTCAAAGAAAA+AGG | - | chr4.1:1921367-1921386 | None:intergenic | 20.0% |
| !! | ATATTGTTCTTAAATTGTTG+AGG | + | chr4.1:1920302-1920321 | MS.gene020499:CDS | 20.0% |
| !! | CATAATCAATCTAAAGAATT+AGG | - | chr4.1:1921468-1921487 | None:intergenic | 20.0% |
| !!! | ATAAAAACTATTTTCAACCA+AGG | + | chr4.1:1921079-1921098 | MS.gene020499:intron | 20.0% |
| !!! | ATATACTGAAATTTGTTGAT+AGG | + | chr4.1:1920835-1920854 | MS.gene020499:intron | 20.0% |
| !!! | TAAAAACTATTTTCAACCAA+GGG | + | chr4.1:1921080-1921099 | MS.gene020499:intron | 20.0% |
| !!! | TTGAATATTTGGTTTAAACT+TGG | + | chr4.1:1920745-1920764 | MS.gene020499:intron | 20.0% |
| !!! | TTTGTATGTTGGTTTAAATT+TGG | + | chr4.1:1920870-1920889 | MS.gene020499:intron | 20.0% |
| ! | AAACTTGGTTGTATAAATAG+AGG | + | chr4.1:1920760-1920779 | MS.gene020499:intron | 25.0% |
| ! | AACTTGGTTGTATAAATAGA+GGG | + | chr4.1:1920761-1920780 | MS.gene020499:intron | 25.0% |
| ! | ATGTTAAGTTTAGGAAGATT+AGG | + | chr4.1:1920347-1920366 | MS.gene020499:CDS | 25.0% |
| ! | ATTGTTGAGGAATATTGTTA+AGG | + | chr4.1:1920315-1920334 | MS.gene020499:CDS | 25.0% |
| ! | CAATATAGCTTATGAAAACA+GGG | - | chr4.1:1921175-1921194 | None:intergenic | 25.0% |
| ! | GATACACAAGAACTATTATT+AGG | + | chr4.1:1921706-1921725 | MS.gene020499:CDS | 25.0% |
| ! | TTAAACCAACATACAAAAGT+TGG | - | chr4.1:1920867-1920886 | None:intergenic | 25.0% |
| ! | TTGCATAAAAGTAGAAAAGT+CGG | + | chr4.1:1921054-1921073 | MS.gene020499:intron | 25.0% |
| !! | CTAGTGTATTACATTTTGAA+TGG | + | chr4.1:1921910-1921929 | MS.gene020499:intron | 25.0% |
| !! | TCCAAACGTAAATTGTTATT+TGG | - | chr4.1:1921878-1921897 | None:intergenic | 25.0% |
| !!! | ATGTCATAAGCTATTTTCAT+AGG | + | chr4.1:1921242-1921261 | MS.gene020499:intron | 25.0% |
| !!! | CAAACGTAAATTGTTATTTG+GGG | - | chr4.1:1921876-1921895 | None:intergenic | 25.0% |
| !!! | CCAAACGTAAATTGTTATTT+GGG | - | chr4.1:1921877-1921896 | None:intergenic | 25.0% |
| !!! | CTTTGAGTATTTTAGTTTGA+TGG | + | chr4.1:1921371-1921390 | MS.gene020499:intron | 25.0% |
| !!! | TGCTTTAAAAGAATCATGTT+TGG | + | chr4.1:1922048-1922067 | MS.gene020499:CDS | 25.0% |
| AAATTAACTTTCTCCTCAGT+AGG | - | chr4.1:1920493-1920512 | None:intergenic | 30.0% | |
| AACCTGAGAATGTTAAGTTT+AGG | + | chr4.1:1920338-1920357 | MS.gene020499:CDS | 30.0% | |
| AAGAAGAAGAAGAAGTGAAA+GGG | - | chr4.1:1919829-1919848 | None:intergenic | 30.0% | |
| AAGTTTAGGAAGATTAGGAT+GGG | + | chr4.1:1920352-1920371 | MS.gene020499:CDS | 30.0% | |
| ACTGAATTGGAGATTTCTAT+TGG | + | chr4.1:1920241-1920260 | MS.gene020499:CDS | 30.0% | |
| ACTTGGTTGTATAAATAGAG+GGG | + | chr4.1:1920762-1920781 | MS.gene020499:intron | 30.0% | |
| ATTAGGATGAGTTTCTCTTA+GGG | - | chr4.1:1921019-1921038 | None:intergenic | 30.0% | |
| CCAATATAGCTTATGAAAAC+AGG | - | chr4.1:1921176-1921195 | None:intergenic | 30.0% | |
| CCAGTAGATAAACTCAAATA+AGG | + | chr4.1:1921295-1921314 | MS.gene020499:intron | 30.0% | |
| CCCAAATAACAATTTACGTT+TGG | + | chr4.1:1921874-1921893 | MS.gene020499:intron | 30.0% | |
| CTATTGGTACTTATGTTTCA+GGG | + | chr4.1:1920257-1920276 | MS.gene020499:CDS | 30.0% | |
| CTTAGGGTGTAAATATACTT+GGG | - | chr4.1:1921003-1921022 | None:intergenic | 30.0% | |
| GATGTAAAAGACAAGATGAA+AGG | + | chr4.1:1919782-1919801 | MS.gene020499:CDS | 30.0% | |
| GATTCAAATTTACCTCTTTC+AGG | + | chr4.1:1921500-1921519 | MS.gene020499:intron | 30.0% | |
| GGTTAATTTCCACAATTGAA+AGG | - | chr4.1:1921836-1921855 | None:intergenic | 30.0% | |
| GTTAGGATTTGAACTTAAAG+AGG | + | chr4.1:1920435-1920454 | MS.gene020499:CDS | 30.0% | |
| TAACTTATGCCTTTCAATTG+TGG | + | chr4.1:1921824-1921843 | MS.gene020499:intron | 30.0% | |
| TAAGTTTAGGAAGATTAGGA+TGG | + | chr4.1:1920351-1920370 | MS.gene020499:CDS | 30.0% | |
| TATTAGGATGAGTTTCTCTT+AGG | - | chr4.1:1921020-1921039 | None:intergenic | 30.0% | |
| TCAAATAAGGTAATCCAAAC+AGG | + | chr4.1:1921308-1921327 | MS.gene020499:intron | 30.0% | |
| TCTATTGGTACTTATGTTTC+AGG | + | chr4.1:1920256-1920275 | MS.gene020499:CDS | 30.0% | |
| TCTTAGGGTGTAAATATACT+TGG | - | chr4.1:1921004-1921023 | None:intergenic | 30.0% | |
| TCTTCTCAAAGATCTCAAAA+TGG | + | chr4.1:1920067-1920086 | MS.gene020499:CDS | 30.0% | |
| TCTTCTTCTGGTAAATTCAA+AGG | + | chr4.1:1919845-1919864 | MS.gene020499:CDS | 30.0% | |
| TGCTTAAACCTTTACTTGAT+AGG | - | chr4.1:1920952-1920971 | None:intergenic | 30.0% | |
| TTAAATTTGGCTGTAATGCA+AGG | + | chr4.1:1920883-1920902 | MS.gene020499:intron | 30.0% | |
| TTCCTAAACTTAACATTCTC+AGG | - | chr4.1:1920343-1920362 | None:intergenic | 30.0% | |
| TTCTGAGTCTAATACTGAAT+TGG | + | chr4.1:1920228-1920247 | MS.gene020499:CDS | 30.0% | |
| TTTGAACTTAAAGAGGAGAA+TGG | + | chr4.1:1920442-1920461 | MS.gene020499:CDS | 30.0% | |
| ! | AAACAACAGAATCTGTTTCT+AGG | - | chr4.1:1922201-1922220 | None:intergenic | 30.0% |
| ! | ATTAGGATTCAGTTTTCAGA+TGG | + | chr4.1:1921723-1921742 | MS.gene020499:CDS | 30.0% |
| ! | CAAGGGTATACTTTGTTTAT+GGG | + | chr4.1:1921097-1921116 | MS.gene020499:intron | 30.0% |
| ! | CATCATCATCGTTTTCAATT+GGG | - | chr4.1:1920186-1920205 | None:intergenic | 30.0% |
| ! | CCTGTTTTCATAAGCTATAT+TGG | + | chr4.1:1921173-1921192 | MS.gene020499:intron | 30.0% |
| ! | CCTTATTTGAGTTTATCTAC+TGG | - | chr4.1:1921298-1921317 | None:intergenic | 30.0% |
| ! | GCTTTTCTTTAAGTGACTTT+GGG | - | chr4.1:1921665-1921684 | None:intergenic | 30.0% |
| ! | TCATCATCATCGTTTTCAAT+TGG | - | chr4.1:1920187-1920206 | None:intergenic | 30.0% |
| ! | TGCTTTTCTTTAAGTGACTT+TGG | - | chr4.1:1921666-1921685 | None:intergenic | 30.0% |
| ! | TTTGTCCAACTTTTGTATGT+TGG | + | chr4.1:1920859-1920878 | MS.gene020499:intron | 30.0% |
| ! | TTTTTCATAAAGAGCCTGTT+TGG | - | chr4.1:1921325-1921344 | None:intergenic | 30.0% |
| !! | AACAACAGAATCTGTTTCTA+GGG | - | chr4.1:1922200-1922219 | None:intergenic | 30.0% |
| !! | TGGTTGTTTTACGATATATG+CGG | - | chr4.1:1920921-1920940 | None:intergenic | 30.0% |
| !!! | TCTGTCAATCTTTTTTGGTT+CGG | - | chr4.1:1920617-1920636 | None:intergenic | 30.0% |
| AACAGTAAGACACTAACACT+TGG | - | chr4.1:1921964-1921983 | None:intergenic | 35.0% | |
| ACAGTAAGACACTAACACTT+GGG | - | chr4.1:1921963-1921982 | None:intergenic | 35.0% | |
| ACCAAAAAAGATTGACAGAC+AGG | + | chr4.1:1920618-1920637 | MS.gene020499:CDS | 35.0% | |
| ACCTTTACTTGATAGGATTG+TGG | - | chr4.1:1920945-1920964 | None:intergenic | 35.0% | |
| ACTTCTTCTTCTTCTTCTTC+TGG | + | chr4.1:1919833-1919852 | MS.gene020499:CDS | 35.0% | |
| ATATCAACAGAACCTTCAGA+CGG | - | chr4.1:1920286-1920305 | None:intergenic | 35.0% | |
| ATCAGTGAACCACTTGTAAA+TGG | + | chr4.1:1922250-1922269 | MS.gene020499:CDS | 35.0% | |
| CAAGAAAGCAATTGTGTTGT+TGG | + | chr4.1:1920516-1920535 | MS.gene020499:CDS | 35.0% | |
| CACAAACTGCATTATCAACA+TGG | - | chr4.1:1922023-1922042 | None:intergenic | 35.0% | |
| CCAAAGATTAAAGAAGCTGT+GGG | + | chr4.1:1920379-1920398 | MS.gene020499:CDS | 35.0% | |
| CCATAAACAAAGTATACCCT+TGG | - | chr4.1:1921099-1921118 | None:intergenic | 35.0% | |
| CGAAAGGGTTGTTTACAAAT+TGG | - | chr4.1:1920118-1920137 | None:intergenic | 35.0% | |
| CTACTAAGCTGAAGAAGTTA+TGG | + | chr4.1:1920975-1920994 | MS.gene020499:intron | 35.0% | |
| GAAGAAGAAGAAGAAGTGAA+AGG | - | chr4.1:1919830-1919849 | None:intergenic | 35.0% | |
| GAAGTGACGAATGAATCAAA+TGG | - | chr4.1:1920049-1920068 | None:intergenic | 35.0% | |
| GGTGTTAAAGTTTCTCTCTT+TGG | - | chr4.1:1920565-1920584 | None:intergenic | 35.0% | |
| TCCAAAGATTAAAGAAGCTG+TGG | + | chr4.1:1920378-1920397 | MS.gene020499:CDS | 35.0% | |
| TCCACAATCCTATCAAGTAA+AGG | + | chr4.1:1920941-1920960 | MS.gene020499:intron | 35.0% | |
| TCTTACTGTTTATTCCGAGT+TGG | + | chr4.1:1921974-1921993 | MS.gene020499:intron | 35.0% | |
| TGAGAAGAGAAGCTGAATTA+AGG | + | chr4.1:1921607-1921626 | MS.gene020499:CDS | 35.0% | |
| TGTTGGGAAGTAATTGTGTA+GGG | + | chr4.1:1920804-1920823 | MS.gene020499:intron | 35.0% | |
| TTACTTGATAGGATTGTGGA+TGG | - | chr4.1:1920941-1920960 | None:intergenic | 35.0% | |
| ! | AATTTACCTCTTTCAGGTGA+AGG | + | chr4.1:1921506-1921525 | MS.gene020499:intron | 35.0% |
| ! | CCAAGGGTATACTTTGTTTA+TGG | + | chr4.1:1921096-1921115 | MS.gene020499:intron | 35.0% |
| ! | GTTGAATTGCTGAGTTTGTT+AGG | + | chr4.1:1920418-1920437 | MS.gene020499:CDS | 35.0% |
| !! | ACAACAGAATCTGTTTCTAG+GGG | - | chr4.1:1922199-1922218 | None:intergenic | 35.0% |
| !! | GAATGGATTAGAGCATTTGT+CGG | + | chr4.1:1921927-1921946 | MS.gene020499:intron | 35.0% |
| !! | TTTTGCACAGTTTGAGACTA+GGG | + | chr4.1:1920721-1920740 | MS.gene020499:intron | 35.0% |
| !!! | ACAGATTCTGTTGTTTTCAC+CGG | + | chr4.1:1922205-1922224 | MS.gene020499:CDS | 35.0% |
| !!! | ACCTGTCTGTCAATCTTTTT+TGG | - | chr4.1:1920622-1920641 | None:intergenic | 35.0% |
| !!! | CAGCAATTCATTTTTGAGAC+CGG | - | chr4.1:1922227-1922246 | None:intergenic | 35.0% |
| AAATGGATCAAAGCCATCTG+CGG | - | chr4.1:1920032-1920051 | None:intergenic | 40.0% | |
| AAGCAATTGTGAGACTGTTC+GGG | - | chr4.1:1921272-1921291 | None:intergenic | 40.0% | |
| AAGTAAACTGTGGGTTCTGT+TGG | + | chr4.1:1920787-1920806 | MS.gene020499:intron | 40.0% | |
| AGAGGGGAAAAGTAAACTGT+GGG | + | chr4.1:1920778-1920797 | MS.gene020499:intron | 40.0% | |
| AGCTTATGAAAACAGGGTCA+TGG | - | chr4.1:1921169-1921188 | None:intergenic | 40.0% | |
| AGTAAACTGTGGGTTCTGTT+GGG | + | chr4.1:1920788-1920807 | MS.gene020499:intron | 40.0% | |
| CAAGCAATTGTGAGACTGTT+CGG | - | chr4.1:1921273-1921292 | None:intergenic | 40.0% | |
| CCCACAGCTTCTTTAATCTT+TGG | - | chr4.1:1920382-1920401 | None:intergenic | 40.0% | |
| CGGTCTCAAAAATGAATTGC+TGG | + | chr4.1:1922225-1922244 | MS.gene020499:CDS | 40.0% | |
| CTGTTGGGAAGTAATTGTGT+AGG | + | chr4.1:1920803-1920822 | MS.gene020499:intron | 40.0% | |
| GAACGTTTGTAGAAGGAATC+TGG | - | chr4.1:1921576-1921595 | None:intergenic | 40.0% | |
| GAGACTAGGGCTTGAATATT+TGG | + | chr4.1:1920734-1920753 | MS.gene020499:intron | 40.0% | |
| GCAAAAAGCCAAAACGATAG+AGG | + | chr4.1:1922135-1922154 | MS.gene020499:CDS | 40.0% | |
| GGTCTAGTTATTATCCCACA+GGG | + | chr4.1:1921392-1921411 | MS.gene020499:intron | 40.0% | |
| TAGAGGGGAAAAGTAAACTG+TGG | + | chr4.1:1920777-1920796 | MS.gene020499:intron | 40.0% | |
| TAGGGGCTTGAACTTGATTA+GGG | - | chr4.1:1922182-1922201 | None:intergenic | 40.0% | |
| TCAAGGTGTATTTGCTCCAT+GGG | + | chr4.1:1921755-1921774 | MS.gene020499:CDS | 40.0% | |
| TCAGATGGAGTTGTACTTCA+AGG | + | chr4.1:1921738-1921757 | MS.gene020499:CDS | 40.0% | |
| TCTGGTAAATTCAAAGGCCA+AGG | + | chr4.1:1919851-1919870 | MS.gene020499:CDS | 40.0% | |
| TGCATCCTGTAGTTGTTCAA+CGG | + | chr4.1:1922083-1922102 | MS.gene020499:CDS | 40.0% | |
| TGGTCTAGTTATTATCCCAC+AGG | + | chr4.1:1921391-1921410 | MS.gene020499:intron | 40.0% | |
| TTCAAGGTGTATTTGCTCCA+TGG | + | chr4.1:1921754-1921773 | MS.gene020499:CDS | 40.0% | |
| TTCAGCTGAACGTTTGTAGA+AGG | - | chr4.1:1921583-1921602 | None:intergenic | 40.0% | |
| TTGAACTTGATTAGGGCAGA+AGG | - | chr4.1:1922175-1922194 | None:intergenic | 40.0% | |
| ! | GGAGTATCTTGAACCAATTG+TGG | - | chr4.1:1920544-1920563 | None:intergenic | 40.0% |
| ! | GGGGAACTTTTATGTCAGAA+CGG | - | chr4.1:1921857-1921876 | None:intergenic | 40.0% |
| ! | GTCTTCTTCCTCTATCGTTT+TGG | - | chr4.1:1922146-1922165 | None:intergenic | 40.0% |
| ! | TAGGTTTGGGTTTGGGATTA+GGG | - | chr4.1:1919961-1919980 | None:intergenic | 40.0% |
| ! | TGTGTTGTTGGAACCACAAT+TGG | + | chr4.1:1920528-1920547 | MS.gene020499:CDS | 40.0% |
| ! | TTGCTTTGATCTGAAGCGAT+CGG | - | chr4.1:1919989-1920008 | None:intergenic | 40.0% |
| !! | GTTTTGCACAGTTTGAGACT+AGG | + | chr4.1:1920720-1920739 | MS.gene020499:intron | 40.0% |
| !!! | AATCTTTTTTGGTTCGGCCT+CGG | - | chr4.1:1920611-1920630 | None:intergenic | 40.0% |
| AACGATAGAGGAAGAAGACC+TGG | + | chr4.1:1922147-1922166 | MS.gene020499:CDS | 45.0% | |
| AAGAGGAGAATGGAGAGACA+TGG | + | chr4.1:1920452-1920471 | MS.gene020499:CDS | 45.0% | |
| AATGGATCAAAGCCATCTGC+GGG | - | chr4.1:1920031-1920050 | None:intergenic | 45.0% | |
| ACAATGCTGAGTTGCCAACT+CGG | - | chr4.1:1921991-1922010 | None:intergenic | 45.0% | |
| ACCAACTACTGCTCTGTATG+AGG | + | chr4.1:1921779-1921798 | MS.gene020499:CDS | 45.0% | |
| ACCTCATACAGAGCAGTAGT+TGG | - | chr4.1:1921783-1921802 | None:intergenic | 45.0% | |
| ACTTTCTCAGCGGAAATGGT+AGG | - | chr4.1:1920586-1920605 | None:intergenic | 45.0% | |
| AGAAGACCTTCACCTGAAAG+AGG | - | chr4.1:1921515-1921534 | None:intergenic | 45.0% | |
| AGAGGAGAATGGAGAGACAT+GGG | + | chr4.1:1920453-1920472 | MS.gene020499:CDS | 45.0% | |
| ATCCCATGTTTCCCAAAAGC+AGG | + | chr4.1:1922112-1922131 | MS.gene020499:CDS | 45.0% | |
| ATTCATGGAGGTTCCTACTG+AGG | + | chr4.1:1920477-1920496 | MS.gene020499:CDS | 45.0% | |
| CTACAAACGTTCAGCTGAAG+AGG | + | chr4.1:1921584-1921603 | MS.gene020499:CDS | 45.0% | |
| CTAGGGGCTTGAACTTGATT+AGG | - | chr4.1:1922183-1922202 | None:intergenic | 45.0% | |
| GGGAAGTAATTGTGTAGGGT+TGG | + | chr4.1:1920808-1920827 | MS.gene020499:intron | 45.0% | |
| TAAACAACCCTTTCGATCCG+AGG | + | chr4.1:1920123-1920142 | MS.gene020499:CDS | 45.0% | |
| TAATGACACACATGCCCTGT+GGG | - | chr4.1:1921409-1921428 | None:intergenic | 45.0% | |
| TCCCATGTTTCCCAAAAGCA+GGG | + | chr4.1:1922113-1922132 | MS.gene020499:CDS | 45.0% | |
| TTAATGACACACATGCCCTG+TGG | - | chr4.1:1921410-1921429 | None:intergenic | 45.0% | |
| ! | GTAGGTTTGGGTTTGGGATT+AGG | - | chr4.1:1919962-1919981 | None:intergenic | 45.0% |
| !! | TGGCTTTTTGCCCTGCTTTT+GGG | - | chr4.1:1922126-1922145 | None:intergenic | 45.0% |
| !! | TTGGCTTTTTGCCCTGCTTT+TGG | - | chr4.1:1922127-1922146 | None:intergenic | 45.0% |
| !! | TTGGGATTAGGGTTCTGAGA+AGG | - | chr4.1:1919950-1919969 | None:intergenic | 45.0% |
| AAAGGCCAAGGTCGAGTCTT+GGG | + | chr4.1:1919863-1919882 | MS.gene020499:CDS | 50.0% | |
| AAGAACCCAAGACTCGACCT+TGG | - | chr4.1:1919871-1919890 | None:intergenic | 50.0% | |
| ACACGCCGTTGAACAACTAC+AGG | - | chr4.1:1922091-1922110 | None:intergenic | 50.0% | |
| AGAGACATGGGCATTCATGG+AGG | + | chr4.1:1920465-1920484 | MS.gene020499:CDS | 50.0% | |
| GATTAAAGAAGCTGTGGGCG+AGG | + | chr4.1:1920384-1920403 | MS.gene020499:CDS | 50.0% | |
| GGGGTAGGAATGGAATTTGC+AGG | - | chr4.1:1919917-1919936 | None:intergenic | 50.0% | |
| GTGTTCAGAAACCTCGTCCT+CGG | - | chr4.1:1920143-1920162 | None:intergenic | 50.0% | |
| GTTTCAGGGAATCCGTCTGA+AGG | + | chr4.1:1920271-1920290 | MS.gene020499:CDS | 50.0% | |
| TGGAGAGACATGGGCATTCA+TGG | + | chr4.1:1920462-1920481 | MS.gene020499:CDS | 50.0% | |
| ! | AGAGCAGTAGTTGGTTCCCA+TGG | - | chr4.1:1921774-1921793 | None:intergenic | 50.0% |
| ! | CTTTGATCTGAAGCGATCGG+TGG | - | chr4.1:1919986-1920005 | None:intergenic | 50.0% |
| ! | GGCTACTTTCTCAGCGGAAA+TGG | - | chr4.1:1920590-1920609 | None:intergenic | 50.0% |
| ! | GGTGGAGTAGGTTTGGGTTT+GGG | - | chr4.1:1919968-1919987 | None:intergenic | 50.0% |
| !! | GCCCTGCTTTTGGGAAACAT+GGG | - | chr4.1:1922117-1922136 | None:intergenic | 50.0% |
| !! | TAGGGTTCTGAGAAGGACGA+GGG | - | chr4.1:1919943-1919962 | None:intergenic | 50.0% |
| !! | TGCCCTGCTTTTGGGAAACA+TGG | - | chr4.1:1922118-1922137 | None:intergenic | 50.0% |
| !! | TTAGGGTTCTGAGAAGGACG+AGG | - | chr4.1:1919944-1919963 | None:intergenic | 50.0% |
| AAACCACGCAAACCCGCAGA+TGG | + | chr4.1:1920016-1920035 | MS.gene020499:CDS | 55.0% | |
| AACCTCGTCCTCGGATCGAA+AGG | - | chr4.1:1920134-1920153 | None:intergenic | 55.0% | |
| ACCTCGTCCTCGGATCGAAA+GGG | - | chr4.1:1920133-1920152 | None:intergenic | 55.0% | |
| AGCGATCGGTGGAGTAGGTT+TGG | - | chr4.1:1919975-1919994 | None:intergenic | 55.0% | |
| CAAAGGCCAAGGTCGAGTCT+TGG | + | chr4.1:1919862-1919881 | MS.gene020499:CDS | 55.0% | |
| GAAGCTGTGGGCGAGGTTAT+TGG | + | chr4.1:1920391-1920410 | MS.gene020499:CDS | 55.0% | |
| GCGATCGGTGGAGTAGGTTT+GGG | - | chr4.1:1919974-1919993 | None:intergenic | 55.0% | |
| GGACGAGGTTTCTGAACACG+TGG | + | chr4.1:1920144-1920163 | MS.gene020499:CDS | 55.0% | |
| TCTGAGAAGGACGAGGGGTA+GGG | - | chr4.1:1919937-1919956 | None:intergenic | 55.0% | |
| TTCCGCTGAGAAAGTAGCCG+AGG | + | chr4.1:1920591-1920610 | MS.gene020499:CDS | 55.0% | |
| ! | CGGTGGAGTAGGTTTGGGTT+TGG | - | chr4.1:1919969-1919988 | None:intergenic | 55.0% |
| ! | TCTGAAGCGATCGGTGGAGT+AGG | - | chr4.1:1919980-1919999 | None:intergenic | 55.0% |
| ! | TTCTGAGAAGGACGAGGGGT+AGG | - | chr4.1:1919938-1919957 | None:intergenic | 55.0% |
| !! | AGGGTTCTGAGAAGGACGAG+GGG | - | chr4.1:1919942-1919961 | None:intergenic | 55.0% |
| !! | TGATTAGGGCAGAAGGCACC+AGG | - | chr4.1:1922168-1922187 | None:intergenic | 55.0% |
| AAGCCATCTGCGGGTTTGCG+TGG | - | chr4.1:1920022-1920041 | None:intergenic | 60.0% | |
| ACCCTTTCGATCCGAGGACG+AGG | + | chr4.1:1920129-1920148 | MS.gene020499:CDS | 60.0% | |
| ACGAGGGGTAGGGGTAGGAA+TGG | - | chr4.1:1919927-1919946 | None:intergenic | 60.0% | |
| CTGAGAAGGACGAGGGGTAG+GGG | - | chr4.1:1919936-1919955 | None:intergenic | 60.0% | |
| GCTGTGGGCGAGGTTATTGG+TGG | + | chr4.1:1920394-1920413 | MS.gene020499:CDS | 60.0% | |
| ! | GGCCTCGGCTACTTTCTCAG+CGG | - | chr4.1:1920596-1920615 | None:intergenic | 60.0% |
| GAAGGACGAGGGGTAGGGGT+AGG | - | chr4.1:1919932-1919951 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 1919776 | 1922276 | 1919776 | ID=MS.gene020499 |
| chr4.1 | mRNA | 1919776 | 1922276 | 1919776 | ID=MS.gene020499.t1;Parent=MS.gene020499 |
| chr4.1 | exon | 1919776 | 1920639 | 1919776 | ID=MS.gene020499.t1.exon1;Parent=MS.gene020499.t1 |
| chr4.1 | CDS | 1919776 | 1920639 | 1919776 | ID=cds.MS.gene020499.t1;Parent=MS.gene020499.t1 |
| chr4.1 | exon | 1921522 | 1921800 | 1921522 | ID=MS.gene020499.t1.exon2;Parent=MS.gene020499.t1 |
| chr4.1 | CDS | 1921522 | 1921800 | 1921522 | ID=cds.MS.gene020499.t1;Parent=MS.gene020499.t1 |
| chr4.1 | exon | 1922037 | 1922276 | 1922037 | ID=MS.gene020499.t1.exon3;Parent=MS.gene020499.t1 |
| chr4.1 | CDS | 1922037 | 1922276 | 1922037 | ID=cds.MS.gene020499.t1;Parent=MS.gene020499.t1 |
| Gene Sequence |
| Protein sequence |
