Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020546.t1 | RHN48630.1 | 92.3 | 480 | 29 | 3 | 1 | 477 | 1 | 475 | 2.20E-187 | 665.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020546.t1 | Q9LZS0 | 45.0 | 262 | 123 | 4 | 119 | 367 | 119 | 372 | 1.1e-46 | 189.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020546.t1 | A0A396H5V1 | 92.3 | 480 | 29 | 3 | 1 | 477 | 1 | 475 | 1.6e-187 | 665.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene020546.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020546.t1 | MTR_1g060990 | 51.908 | 524 | 148 | 17 | 17 | 476 | 27 | 510 | 2.70e-152 | 443 |
| MS.gene020546.t1 | MTR_1g492790 | 37.931 | 435 | 210 | 16 | 17 | 413 | 10 | 422 | 3.14e-79 | 255 |
| MS.gene020546.t1 | MTR_1g098900 | 36.877 | 301 | 135 | 4 | 119 | 365 | 57 | 356 | 2.23e-48 | 176 |
| MS.gene020546.t1 | MTR_1g098900 | 42.000 | 100 | 55 | 3 | 110 | 208 | 446 | 543 | 1.35e-17 | 86.3 |
| MS.gene020546.t1 | MTR_1g098870 | 35.185 | 270 | 144 | 4 | 119 | 367 | 55 | 314 | 1.67e-39 | 150 |
| MS.gene020546.t1 | MTR_1g098870 | 40.945 | 127 | 63 | 4 | 108 | 233 | 361 | 476 | 8.29e-20 | 92.8 |
| MS.gene020546.t1 | MTR_6g035370 | 63.462 | 104 | 32 | 3 | 112 | 213 | 46 | 145 | 5.62e-34 | 135 |
| MS.gene020546.t1 | MTR_6g035370 | 43.299 | 97 | 53 | 2 | 115 | 210 | 460 | 555 | 1.02e-18 | 89.7 |
| MS.gene020546.t1 | MTR_1g081180 | 26.879 | 346 | 202 | 12 | 26 | 366 | 29 | 328 | 4.80e-16 | 80.9 |
| MS.gene020546.t1 | MTR_1g081180 | 36.559 | 93 | 55 | 3 | 119 | 208 | 418 | 509 | 4.85e-11 | 65.5 |
| MS.gene020546.t1 | MTR_7g114860 | 32.824 | 131 | 66 | 4 | 88 | 208 | 361 | 479 | 7.55e-14 | 73.9 |
| MS.gene020546.t1 | MTR_2g026725 | 32.812 | 128 | 82 | 3 | 82 | 206 | 223 | 349 | 3.12e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020546.t1 | AT5G03680 | 45.972 | 422 | 165 | 12 | 1 | 387 | 1 | 394 | 4.17e-95 | 299 |
| MS.gene020546.t1 | AT3G10000 | 39.659 | 469 | 224 | 11 | 47 | 477 | 34 | 481 | 1.70e-91 | 286 |
| MS.gene020546.t1 | AT3G10000 | 37.953 | 469 | 222 | 12 | 47 | 477 | 34 | 471 | 1.10e-81 | 261 |
| MS.gene020546.t1 | AT1G76890 | 34.405 | 311 | 142 | 7 | 112 | 366 | 34 | 338 | 1.76e-41 | 156 |
| MS.gene020546.t1 | AT1G76890 | 40.496 | 121 | 70 | 2 | 112 | 231 | 390 | 509 | 1.09e-19 | 92.4 |
| MS.gene020546.t1 | AT1G76880 | 54.955 | 111 | 44 | 2 | 99 | 209 | 46 | 150 | 2.42e-30 | 124 |
| MS.gene020546.t1 | AT1G76880 | 42.000 | 100 | 56 | 2 | 112 | 210 | 401 | 499 | 3.97e-17 | 84.7 |
| MS.gene020546.t1 | AT1G33240 | 59.596 | 99 | 36 | 2 | 119 | 217 | 62 | 156 | 7.34e-30 | 123 |
| MS.gene020546.t1 | AT1G33240 | 42.697 | 89 | 49 | 2 | 119 | 206 | 435 | 522 | 4.92e-16 | 81.3 |
| MS.gene020546.t1 | AT1G33240 | 59.596 | 99 | 36 | 2 | 119 | 217 | 62 | 156 | 1.00e-29 | 123 |
| MS.gene020546.t1 | AT1G33240 | 42.697 | 89 | 49 | 2 | 119 | 206 | 435 | 522 | 4.88e-16 | 81.3 |
| MS.gene020546.t1 | AT1G33240 | 42.697 | 89 | 49 | 2 | 119 | 206 | 396 | 483 | 5.07e-16 | 81.3 |
| MS.gene020546.t1 | AT1G33240 | 62.712 | 59 | 19 | 1 | 159 | 217 | 62 | 117 | 4.80e-15 | 78.2 |
| MS.gene020546.t1 | AT5G28300 | 35.644 | 101 | 53 | 3 | 119 | 208 | 459 | 558 | 3.37e-12 | 69.3 |
| MS.gene020546.t1 | AT5G47660 | 41.758 | 91 | 45 | 4 | 119 | 206 | 303 | 388 | 1.64e-11 | 66.2 |
Find 90 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTAGGGATGCTGCTTTAA+TGG | 0.226192 | 7.2:+9084257 | MS.gene020546:CDS |
| ATTATTGCTTTCTCCATATA+AGG | 0.243458 | 7.2:-9083812 | None:intergenic |
| CGACAACTTGAAGCCTTATA+TGG | 0.245987 | 7.2:+9083799 | MS.gene020546:CDS |
| AAATTTCAACTCACTGGTTT+TGG | 0.258916 | 7.2:-9084623 | None:intergenic |
| TACTATCATAGTGTTGATTA+TGG | 0.322614 | 7.2:-9082518 | None:intergenic |
| TGATTCACAGCTGAAGAAAT+TGG | 0.325251 | 7.2:+9084080 | MS.gene020546:CDS |
| CTCTTTGGGATCAACTTTCT+AGG | 0.339621 | 7.2:+9082943 | MS.gene020546:CDS |
| GCTTCAACTCCTTCATTTAG+TGG | 0.343719 | 7.2:+9082783 | MS.gene020546:CDS |
| TTCAAAGAAGCTACTCAAAA+AGG | 0.354316 | 7.2:+9082918 | MS.gene020546:CDS |
| GGAGTAGTGGAAGAAGCTTC+TGG | 0.362256 | 7.2:+9084034 | MS.gene020546:CDS |
| TTGATCATTAACATCACAAT+AGG | 0.364480 | 7.2:-9084457 | None:intergenic |
| AAATTGTTGGTAGTTGATCT+TGG | 0.391857 | 7.2:-9082579 | None:intergenic |
| CACAAAGACATTGGAACAAA+AGG | 0.401812 | 7.2:+9084134 | MS.gene020546:CDS |
| GTGTTGTTGATGTGGGTTGC+CGG | 0.402706 | 7.2:-9082625 | None:intergenic |
| ATTCCATTATCTCATGGAAA+TGG | 0.406779 | 7.2:+9082491 | None:intergenic |
| TGTTGATGTGGGTTGCCGGC+GGG | 0.415527 | 7.2:-9082621 | None:intergenic |
| GAAACAAGAGAAAGAAAGGT+TGG | 0.430312 | 7.2:+9084191 | MS.gene020546:CDS |
| CCCTCAGTACTCATCAAGAA+TGG | 0.434497 | 7.2:-9084555 | None:intergenic |
| TGTGGGAGTGAAGATGAAGA+AGG | 0.446001 | 7.2:-9083835 | None:intergenic |
| GGAGGAAACAAGAGAAAGAA+AGG | 0.446373 | 7.2:+9084187 | MS.gene020546:CDS |
| ATTGGCGTTGATGCTTCAAC+TGG | 0.446616 | 7.2:+9082834 | MS.gene020546:CDS |
| GCTGAAACTACTGGTTTCAT+TGG | 0.450069 | 7.2:+9082816 | MS.gene020546:CDS |
| TTTGGGCTAAAGAAAGAGCT+TGG | 0.456386 | 7.2:+9084229 | MS.gene020546:CDS |
| AAACATTTCCTGATTGTTGT+TGG | 0.473343 | 7.2:-9083872 | None:intergenic |
| GGAGAAGCAAGAAGAATGGT+TGG | 0.477059 | 7.2:+9084104 | MS.gene020546:CDS |
| AAAGAGCTTGGATTGAAGCT+AGG | 0.477669 | 7.2:+9084241 | MS.gene020546:CDS |
| TATCACAGTGTTTGTTAATG+TGG | 0.481655 | 7.2:-9083900 | None:intergenic |
| GGAAAAGCAGGAAGACAAGA+TGG | 0.483853 | 7.2:+9083757 | MS.gene020546:CDS |
| GTGGGAGAATTACAACTTGA+AGG | 0.483975 | 7.2:+9084587 | MS.gene020546:CDS |
| AAGACCAGGGAAGGAAAAGC+AGG | 0.489921 | 7.2:+9083745 | MS.gene020546:CDS |
| TGAGTAGCTTCTTTGAATTG+AGG | 0.494836 | 7.2:-9082912 | None:intergenic |
| ATCTCATAGTGTTGTTGATG+TGG | 0.498646 | 7.2:-9082633 | None:intergenic |
| TATAATGTTAACAATGGAGA+TGG | 0.503073 | 7.2:+9084426 | MS.gene020546:CDS |
| AATGATCAAAGGGAAGAACT+TGG | 0.504968 | 7.2:+9084471 | MS.gene020546:CDS |
| ACTCAATCTTCTTCTCATGA+TGG | 0.508615 | 7.2:+9084324 | MS.gene020546:CDS |
| AATTTAGAAGCTGAAACTAC+TGG | 0.509455 | 7.2:+9082807 | MS.gene020546:CDS |
| CACTATGAGATGATGATGTT+TGG | 0.510125 | 7.2:+9082645 | MS.gene020546:CDS |
| CCTCAGTACTCATCAAGAAT+GGG | 0.515932 | 7.2:-9084554 | None:intergenic |
| TTGTGATGTTAATGATCAAA+GGG | 0.516121 | 7.2:+9084461 | MS.gene020546:CDS |
| TGGAAATAATAAGAAGAGAA+AGG | 0.518093 | 7.2:+9084344 | MS.gene020546:CDS |
| TTGATGCTTCAACTGGAAGA+TGG | 0.518598 | 7.2:+9082841 | MS.gene020546:CDS |
| ATCACAGTGTTTGTTAATGT+GGG | 0.521709 | 7.2:-9083899 | None:intergenic |
| TGTTTATATAATGTTAACAA+TGG | 0.527902 | 7.2:+9084420 | MS.gene020546:CDS |
| CCATTCTTGATGAGTACTGA+GGG | 0.532198 | 7.2:+9084555 | MS.gene020546:CDS |
| GGGTGTTAAGAGAAGAAGAG+TGG | 0.532295 | 7.2:+9084166 | MS.gene020546:CDS |
| AAGAGCTTGGATTGAAGCTA+GGG | 0.532871 | 7.2:+9084242 | MS.gene020546:CDS |
| TACTGAGGGAGGAAATATGT+GGG | 0.537099 | 7.2:+9084569 | MS.gene020546:CDS |
| TCTAAATTACCACTAAATGA+AGG | 0.538013 | 7.2:-9082792 | None:intergenic |
| GTTGATGTGGGTTGCCGGCG+GGG | 0.539548 | 7.2:-9082620 | None:intergenic |
| ATTGTGATGTTAATGATCAA+AGG | 0.541913 | 7.2:+9084460 | MS.gene020546:CDS |
| TGGTGGAGAAGCAAGAAGAA+TGG | 0.548730 | 7.2:+9084100 | MS.gene020546:CDS |
| TCTCATAGTGTTGTTGATGT+GGG | 0.555577 | 7.2:-9082632 | None:intergenic |
| CTCCGCCGTAGGGAAATTGT+TGG | 0.561007 | 7.2:-9082592 | None:intergenic |
| CGATGATATGTCGAATTCAG+TGG | 0.561920 | 7.2:-9083941 | None:intergenic |
| GTTAACAATGGAGATGGAGC+TGG | 0.562473 | 7.2:+9084432 | MS.gene020546:CDS |
| TTGTTGATGTGGGTTGCCGG+CGG | 0.563154 | 7.2:-9082622 | None:intergenic |
| AGTGTAAGAGTCTCTTGTCT+AGG | 0.565795 | 7.2:-9082864 | None:intergenic |
| ATGATAACAACAATGTTGAT+CGG | 0.565825 | 7.2:+9084394 | MS.gene020546:CDS |
| TTCACAGCTGAAGAAATTGG+TGG | 0.567445 | 7.2:+9084083 | MS.gene020546:CDS |
| GGGAGAGTACAAACAAATGA+TGG | 0.567681 | 7.2:+9084492 | MS.gene020546:CDS |
| ACAGTAACAGCAGCAACAGC+AGG | 0.567957 | 7.2:-9082726 | None:intergenic |
| GCACTAGTGGTGGTGTTGGT+AGG | 0.568004 | 7.2:-9082762 | None:intergenic |
| GAAAAGCAGGAAGACAAGAT+GGG | 0.570202 | 7.2:+9083758 | MS.gene020546:CDS |
| GCGGGGAATAGCTCCGCCGT+AGG | 0.579850 | 7.2:-9082603 | None:intergenic |
| AGTGGTGGTGTTGGTAGGAG+TGG | 0.582934 | 7.2:-9082757 | None:intergenic |
| CAAAGAGAATGAGTTCTCCA+TGG | 0.584262 | 7.2:+9083996 | MS.gene020546:CDS |
| ATGATCAAAGGGAAGAACTT+GGG | 0.587215 | 7.2:+9084472 | MS.gene020546:CDS |
| GGAGAAACTCACAAAGACAT+TGG | 0.587360 | 7.2:+9084125 | MS.gene020546:CDS |
| CGGGGAATAGCTCCGCCGTA+GGG | 0.588808 | 7.2:-9082602 | None:intergenic |
| AACATGGCTATCAAAGGAGT+GGG | 0.590438 | 7.2:+9083677 | MS.gene020546:CDS |
| TGAAGCACTAGTGGTGGTGT+TGG | 0.592317 | 7.2:-9082766 | None:intergenic |
| CCCATTCTTGATGAGTACTG+AGG | 0.594659 | 7.2:+9084554 | MS.gene020546:CDS |
| GTGAAGAACATGGCTATCAA+AGG | 0.598664 | 7.2:+9083671 | MS.gene020546:CDS |
| AGGATAATGTGTGAAGAACA+TGG | 0.603245 | 7.2:+9083661 | MS.gene020546:intron |
| GAACATGGCTATCAAAGGAG+TGG | 0.606340 | 7.2:+9083676 | MS.gene020546:CDS |
| TGATGATCATAGTACTCATG+AGG | 0.611714 | 7.2:+9083969 | MS.gene020546:CDS |
| GATGATCATAGTACTCATGA+GGG | 0.620992 | 7.2:+9083970 | MS.gene020546:CDS |
| TGAAGGAGTTGAAGCACTAG+TGG | 0.623923 | 7.2:-9082775 | None:intergenic |
| CGAATTCAGTGGAGTTTGTG+AGG | 0.627628 | 7.2:-9083930 | None:intergenic |
| AACTACCAACAATTTCCCTA+CGG | 0.632466 | 7.2:+9082587 | MS.gene020546:CDS |
| TGTTAAGAGAAGAAGAGTGG+AGG | 0.635425 | 7.2:+9084169 | MS.gene020546:CDS |
| TAGTGGAAGAAGCTTCTGGA+AGG | 0.636390 | 7.2:+9084038 | MS.gene020546:CDS |
| CTAGAAAGTTGATCCCAAAG+AGG | 0.637397 | 7.2:-9082942 | None:intergenic |
| ACGGCGGAGCTATTCCCCGC+CGG | 0.640713 | 7.2:+9082606 | MS.gene020546:CDS |
| GTACTGAGGGAGGAAATATG+TGG | 0.650852 | 7.2:+9084568 | MS.gene020546:CDS |
| TACCAACAATTTCCCTACGG+CGG | 0.660564 | 7.2:+9082590 | MS.gene020546:CDS |
| TTCTTGATGAGTACTGAGGG+AGG | 0.678329 | 7.2:+9084558 | MS.gene020546:CDS |
| ATGATCATAGTACTCATGAG+GGG | 0.712141 | 7.2:+9083971 | MS.gene020546:CDS |
| AGGAGTTGAAGCACTAGTGG+TGG | 0.716487 | 7.2:-9082772 | None:intergenic |
| ACAAAATCATGAAGACAACG+AGG | 0.773702 | 7.2:-9082690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAAGAGATAATAAAA+GGG | - | chr7.2:9083272-9083291 | None:intergenic | 10.0% |
| !! | TTAAATAAAGAGATAATAAA+AGG | - | chr7.2:9083273-9083292 | None:intergenic | 10.0% |
| !! | TGTTTATATAATGTTAACAA+TGG | + | chr7.2:9084420-9084439 | MS.gene020546:CDS | 15.0% |
| !! | AAAAACAACAAAAGCTTAAT+TGG | - | chr7.2:9083604-9083623 | None:intergenic | 20.0% |
| !! | AAAACAACAAAAGCTTAATT+GGG | - | chr7.2:9083603-9083622 | None:intergenic | 20.0% |
| !! | AAACATACCAAATAATTTGA+AGG | - | chr7.2:9083003-9083022 | None:intergenic | 20.0% |
| !!! | ATGTCATTTAAATTGTCAAT+AGG | - | chr7.2:9083444-9083463 | None:intergenic | 20.0% |
| !!! | TTTAAAATACACTCAACTTT+CGG | + | chr7.2:9083288-9083307 | MS.gene020546:intron | 20.0% |
| !!! | TTTTTGTGGAATTTTTGTTA+AGG | + | chr7.2:9083118-9083137 | MS.gene020546:intron | 20.0% |
| ! | AAAAAAGGTAGTACTAATCT+TGG | - | chr7.2:9083207-9083226 | None:intergenic | 25.0% |
| ! | AAACAACAAAAGCTTAATTG+GGG | - | chr7.2:9083602-9083621 | None:intergenic | 25.0% |
| ! | AATTAATATTGAACCCTAGT+TGG | - | chr7.2:9083576-9083595 | None:intergenic | 25.0% |
| ! | ACAAAAATTCCACAAAAAGT+AGG | - | chr7.2:9083116-9083135 | None:intergenic | 25.0% |
| ! | ACAATTTCAAAAGGGAAAAA+AGG | - | chr7.2:9083222-9083241 | None:intergenic | 25.0% |
| ! | ACCAAATAATTTGAAGGAAA+AGG | - | chr7.2:9082997-9083016 | None:intergenic | 25.0% |
| ! | ATGATAACAACAATGTTGAT+CGG | + | chr7.2:9084394-9084413 | MS.gene020546:CDS | 25.0% |
| ! | ATTATTGCTTTCTCCATATA+AGG | - | chr7.2:9083815-9083834 | None:intergenic | 25.0% |
| ! | ATTGTGATGTTAATGATCAA+AGG | + | chr7.2:9084460-9084479 | MS.gene020546:CDS | 25.0% |
| ! | CAAAAATTCCACAAAAAGTA+GGG | - | chr7.2:9083115-9083134 | None:intergenic | 25.0% |
| ! | TAATTATTTATGCTTGCACT+TGG | + | chr7.2:9083070-9083089 | MS.gene020546:intron | 25.0% |
| ! | TATAATGTTAACAATGGAGA+TGG | + | chr7.2:9084426-9084445 | MS.gene020546:CDS | 25.0% |
| ! | TCTAAATTACCACTAAATGA+AGG | - | chr7.2:9082795-9082814 | None:intergenic | 25.0% |
| ! | TGGAAATAATAAGAAGAGAA+AGG | + | chr7.2:9084344-9084363 | MS.gene020546:CDS | 25.0% |
| ! | TTGATCATTAACATCACAAT+AGG | - | chr7.2:9084460-9084479 | None:intergenic | 25.0% |
| ! | TTGTGATGTTAATGATCAAA+GGG | + | chr7.2:9084461-9084480 | MS.gene020546:CDS | 25.0% |
| ! | TTTGTGTTAACAAAAATGAG+TGG | + | chr7.2:9083020-9083039 | MS.gene020546:intron | 25.0% |
| !! | TCCTTTTCCTTCAAATTATT+TGG | + | chr7.2:9082993-9083012 | MS.gene020546:intron | 25.0% |
| !! | TTTTGTTAAGGTTCTTTTAC+TGG | + | chr7.2:9083130-9083149 | MS.gene020546:intron | 25.0% |
| !!! | GGAAAAAGAGCATAAATTTT+GGG | + | chr7.2:9084212-9084231 | MS.gene020546:CDS | 25.0% |
| !!! | TACTATCATAGTGTTGATTA+TGG | - | chr7.2:9082521-9082540 | None:intergenic | 25.0% |
| !!! | TGGAAAAAGAGCATAAATTT+TGG | + | chr7.2:9084211-9084230 | MS.gene020546:CDS | 25.0% |
| !!! | TGGTACAAAAATTGTTTTGT+GGG | - | chr7.2:9083855-9083874 | None:intergenic | 25.0% |
| !!! | TTGGTACAAAAATTGTTTTG+TGG | - | chr7.2:9083856-9083875 | None:intergenic | 25.0% |
| AAACACTTTGCACTTAAAAG+AGG | - | chr7.2:9083249-9083268 | None:intergenic | 30.0% | |
| AAACATTTCCTGATTGTTGT+TGG | - | chr7.2:9083875-9083894 | None:intergenic | 30.0% | |
| AACAACAAAAGCTTAATTGG+GGG | - | chr7.2:9083601-9083620 | None:intergenic | 30.0% | |
| AACACTTTGCACTTAAAAGA+GGG | - | chr7.2:9083248-9083267 | None:intergenic | 30.0% | |
| AATATTCATAGCTCCAACTA+GGG | + | chr7.2:9083560-9083579 | MS.gene020546:intron | 30.0% | |
| AATTTAGAAGCTGAAACTAC+TGG | + | chr7.2:9082807-9082826 | MS.gene020546:CDS | 30.0% | |
| ACAAATACTACAAAAAGACC+AGG | + | chr7.2:9083731-9083750 | MS.gene020546:CDS | 30.0% | |
| ACATATTACACGACAATACA+TGG | + | chr7.2:9083472-9083491 | MS.gene020546:intron | 30.0% | |
| CAAATACTACAAAAAGACCA+GGG | + | chr7.2:9083732-9083751 | MS.gene020546:CDS | 30.0% | |
| CTAATTCTATCTGTCTAACA+TGG | + | chr7.2:9083375-9083394 | MS.gene020546:intron | 30.0% | |
| GAAGCTTTGCAAAAATTAAC+AGG | + | chr7.2:9084279-9084298 | MS.gene020546:CDS | 30.0% | |
| TTCAAAGAAGCTACTCAAAA+AGG | + | chr7.2:9082918-9082937 | MS.gene020546:CDS | 30.0% | |
| TTTGTGAGCAAATTCATTGA+GGG | + | chr7.2:9083328-9083347 | MS.gene020546:intron | 30.0% | |
| ! | ATCACAGTGTTTGTTAATGT+GGG | - | chr7.2:9083902-9083921 | None:intergenic | 30.0% |
| ! | CAATAGGAATGAGTTTTTGA+AGG | - | chr7.2:9083428-9083447 | None:intergenic | 30.0% |
| ! | CATTGCTTGTATTGATGTTA+AGG | + | chr7.2:9083641-9083660 | MS.gene020546:intron | 30.0% |
| ! | TATCACAGTGTTTGTTAATG+TGG | - | chr7.2:9083903-9083922 | None:intergenic | 30.0% |
| ! | TTTTGTGAGCAAATTCATTG+AGG | + | chr7.2:9083327-9083346 | MS.gene020546:intron | 30.0% |
| ! | TTTTTGTACCAACAACAATC+AGG | + | chr7.2:9083864-9083883 | MS.gene020546:CDS | 30.0% |
| !! | AAATTGTTGGTAGTTGATCT+TGG | - | chr7.2:9082582-9082601 | None:intergenic | 30.0% |
| !!! | AATTTTGTCCCTACTTTTTG+TGG | + | chr7.2:9083104-9083123 | MS.gene020546:intron | 30.0% |
| AACTACCAACAATTTCCCTA+CGG | + | chr7.2:9082587-9082606 | MS.gene020546:CDS | 35.0% | |
| AAGAGAAAAAAGAGGAGTAG+TGG | + | chr7.2:9084021-9084040 | MS.gene020546:CDS | 35.0% | |
| AATGATCAAAGGGAAGAACT+TGG | + | chr7.2:9084471-9084490 | MS.gene020546:CDS | 35.0% | |
| ACAAAATCATGAAGACAACG+AGG | - | chr7.2:9082693-9082712 | None:intergenic | 35.0% | |
| ACTCAATCTTCTTCTCATGA+TGG | + | chr7.2:9084324-9084343 | MS.gene020546:CDS | 35.0% | |
| AGGATAATGTGTGAAGAACA+TGG | + | chr7.2:9083661-9083680 | MS.gene020546:intron | 35.0% | |
| ATGATCAAAGGGAAGAACTT+GGG | + | chr7.2:9084472-9084491 | MS.gene020546:CDS | 35.0% | |
| ATGATCATAGTACTCATGAG+GGG | + | chr7.2:9083971-9083990 | MS.gene020546:CDS | 35.0% | |
| CAATATTCATAGCTCCAACT+AGG | + | chr7.2:9083559-9083578 | MS.gene020546:intron | 35.0% | |
| CACAAAGACATTGGAACAAA+AGG | + | chr7.2:9084134-9084153 | MS.gene020546:CDS | 35.0% | |
| CCATGGATAAGAGAAAAAAG+AGG | + | chr7.2:9084013-9084032 | MS.gene020546:CDS | 35.0% | |
| CTAGTTGGAGCTATGAATAT+TGG | - | chr7.2:9083561-9083580 | None:intergenic | 35.0% | |
| GAAACAAGAGAAAGAAAGGT+TGG | + | chr7.2:9084191-9084210 | MS.gene020546:CDS | 35.0% | |
| GATGATCATAGTACTCATGA+GGG | + | chr7.2:9083970-9083989 | MS.gene020546:CDS | 35.0% | |
| GGAACAAAAGGAAAAAGAGA+GGG | + | chr7.2:9084146-9084165 | MS.gene020546:CDS | 35.0% | |
| TACTCAAAAAGGTCCTCTTT+GGG | + | chr7.2:9082929-9082948 | MS.gene020546:CDS | 35.0% | |
| TGAGTAGCTTCTTTGAATTG+AGG | - | chr7.2:9082915-9082934 | None:intergenic | 35.0% | |
| TGATGATCATAGTACTCATG+AGG | + | chr7.2:9083969-9083988 | MS.gene020546:CDS | 35.0% | |
| TGATTCACAGCTGAAGAAAT+TGG | + | chr7.2:9084080-9084099 | MS.gene020546:CDS | 35.0% | |
| TGGAACAAAAGGAAAAAGAG+AGG | + | chr7.2:9084145-9084164 | MS.gene020546:CDS | 35.0% | |
| TTGTGAGCAAATTCATTGAG+GGG | + | chr7.2:9083329-9083348 | MS.gene020546:intron | 35.0% | |
| ! | AGAGGGTACACAATTTCAAA+AGG | - | chr7.2:9083231-9083250 | None:intergenic | 35.0% |
| ! | ATCTCATAGTGTTGTTGATG+TGG | - | chr7.2:9082636-9082655 | None:intergenic | 35.0% |
| ! | CACTATGAGATGATGATGTT+TGG | + | chr7.2:9082645-9082664 | MS.gene020546:CDS | 35.0% |
| ! | GAGGGTACACAATTTCAAAA+GGG | - | chr7.2:9083230-9083249 | None:intergenic | 35.0% |
| ! | TCTCATAGTGTTGTTGATGT+GGG | - | chr7.2:9082635-9082654 | None:intergenic | 35.0% |
| !!! | CCTCTTTTTTCTCTTATCCA+TGG | - | chr7.2:9084016-9084035 | None:intergenic | 35.0% |
| AAAGAGCTTGGATTGAAGCT+AGG | + | chr7.2:9084241-9084260 | MS.gene020546:CDS | 40.0% | |
| AAAGGAGTGGGAAAAAATGC+AGG | + | chr7.2:9083689-9083708 | MS.gene020546:CDS | 40.0% | |
| AACATGGCTATCAAAGGAGT+GGG | + | chr7.2:9083677-9083696 | MS.gene020546:CDS | 40.0% | |
| AAGAGCTTGGATTGAAGCTA+GGG | + | chr7.2:9084242-9084261 | MS.gene020546:CDS | 40.0% | |
| AAGGAGTGGGAAAAAATGCA+GGG | + | chr7.2:9083690-9083709 | MS.gene020546:CDS | 40.0% | |
| AGGAAGAGTCTGTGATTGAT+TGG | - | chr7.2:9083408-9083427 | None:intergenic | 40.0% | |
| AGTGTAAGAGTCTCTTGTCT+AGG | - | chr7.2:9082867-9082886 | None:intergenic | 40.0% | |
| CAAAGAGAATGAGTTCTCCA+TGG | + | chr7.2:9083996-9084015 | MS.gene020546:CDS | 40.0% | |
| CCTCAGTACTCATCAAGAAT+GGG | - | chr7.2:9084557-9084576 | None:intergenic | 40.0% | |
| CGATGATATGTCGAATTCAG+TGG | - | chr7.2:9083944-9083963 | None:intergenic | 40.0% | |
| CTACTCAAAAAGGTCCTCTT+TGG | + | chr7.2:9082928-9082947 | MS.gene020546:CDS | 40.0% | |
| GAAAAGCAGGAAGACAAGAT+GGG | + | chr7.2:9083758-9083777 | MS.gene020546:CDS | 40.0% | |
| GCTTCAACTCCTTCATTTAG+TGG | + | chr7.2:9082783-9082802 | MS.gene020546:CDS | 40.0% | |
| GGAGAAACTCACAAAGACAT+TGG | + | chr7.2:9084125-9084144 | MS.gene020546:CDS | 40.0% | |
| GGAGGAAACAAGAGAAAGAA+AGG | + | chr7.2:9084187-9084206 | MS.gene020546:CDS | 40.0% | |
| GTGAAGAACATGGCTATCAA+AGG | + | chr7.2:9083671-9083690 | MS.gene020546:CDS | 40.0% | |
| GTGGGAGAATTACAACTTGA+AGG | + | chr7.2:9084587-9084606 | MS.gene020546:CDS | 40.0% | |
| TACTACAAAAAGACCAGGGA+AGG | + | chr7.2:9083736-9083755 | MS.gene020546:CDS | 40.0% | |
| TACTGAGGGAGGAAATATGT+GGG | + | chr7.2:9084569-9084588 | MS.gene020546:CDS | 40.0% | |
| TGTGAGCAAATTCATTGAGG+GGG | + | chr7.2:9083330-9083349 | MS.gene020546:intron | 40.0% | |
| TGTTAAGAGAAGAAGAGTGG+AGG | + | chr7.2:9084169-9084188 | MS.gene020546:CDS | 40.0% | |
| TTCACAGCTGAAGAAATTGG+TGG | + | chr7.2:9084083-9084102 | MS.gene020546:CDS | 40.0% | |
| TTGATGCTTCAACTGGAAGA+TGG | + | chr7.2:9082841-9082860 | MS.gene020546:CDS | 40.0% | |
| TTGGGATCAACTTTCTAGGT+AGG | + | chr7.2:9082947-9082966 | MS.gene020546:intron | 40.0% | |
| TTTGGGCTAAAGAAAGAGCT+TGG | + | chr7.2:9084229-9084248 | MS.gene020546:CDS | 40.0% | |
| ! | AAATTCATTGAGGGGGTACA+AGG | + | chr7.2:9083337-9083356 | MS.gene020546:intron | 40.0% |
| ! | AATTCATTGAGGGGGTACAA+GGG | + | chr7.2:9083338-9083357 | MS.gene020546:intron | 40.0% |
| ! | CGACAACTTGAAGCCTTATA+TGG | + | chr7.2:9083799-9083818 | MS.gene020546:CDS | 40.0% |
| ! | CTAGAAAGTTGATCCCAAAG+AGG | - | chr7.2:9082945-9082964 | None:intergenic | 40.0% |
| ! | GGGAGAGTACAAACAAATGA+TGG | + | chr7.2:9084492-9084511 | MS.gene020546:CDS | 40.0% |
| !! | CCATTCTTGATGAGTACTGA+GGG | + | chr7.2:9084555-9084574 | MS.gene020546:CDS | 40.0% |
| !! | CTCTTTGGGATCAACTTTCT+AGG | + | chr7.2:9082943-9082962 | MS.gene020546:CDS | 40.0% |
| !! | GCTGAAACTACTGGTTTCAT+TGG | + | chr7.2:9082816-9082835 | MS.gene020546:CDS | 40.0% |
| !! | GTACGTAGCATGTGTTACTT+TGG | + | chr7.2:9083530-9083549 | MS.gene020546:intron | 40.0% |
| CCCTCAGTACTCATCAAGAA+TGG | - | chr7.2:9084558-9084577 | None:intergenic | 45.0% | |
| CGAATTCAGTGGAGTTTGTG+AGG | - | chr7.2:9083933-9083952 | None:intergenic | 45.0% | |
| GAACATGGCTATCAAAGGAG+TGG | + | chr7.2:9083676-9083695 | MS.gene020546:CDS | 45.0% | |
| GGAAAAGCAGGAAGACAAGA+TGG | + | chr7.2:9083757-9083776 | MS.gene020546:CDS | 45.0% | |
| GGAGAAGCAAGAAGAATGGT+TGG | + | chr7.2:9084104-9084123 | MS.gene020546:CDS | 45.0% | |
| GGGTGTTAAGAGAAGAAGAG+TGG | + | chr7.2:9084166-9084185 | MS.gene020546:CDS | 45.0% | |
| GTACTGAGGGAGGAAATATG+TGG | + | chr7.2:9084568-9084587 | MS.gene020546:CDS | 45.0% | |
| GTTAACAATGGAGATGGAGC+TGG | + | chr7.2:9084432-9084451 | MS.gene020546:CDS | 45.0% | |
| TACCAACAATTTCCCTACGG+CGG | + | chr7.2:9082590-9082609 | MS.gene020546:CDS | 45.0% | |
| TAGTGGAAGAAGCTTCTGGA+AGG | + | chr7.2:9084038-9084057 | MS.gene020546:CDS | 45.0% | |
| TGGTGGAGAAGCAAGAAGAA+TGG | + | chr7.2:9084100-9084119 | MS.gene020546:CDS | 45.0% | |
| TGTGGGAGTGAAGATGAAGA+AGG | - | chr7.2:9083838-9083857 | None:intergenic | 45.0% | |
| ! | CCCATTCTTGATGAGTACTG+AGG | + | chr7.2:9084554-9084573 | MS.gene020546:CDS | 45.0% |
| ! | TGAAGGAGTTGAAGCACTAG+TGG | - | chr7.2:9082778-9082797 | None:intergenic | 45.0% |
| !! | AGCTAGGGATGCTGCTTTAA+TGG | + | chr7.2:9084257-9084276 | MS.gene020546:CDS | 45.0% |
| !! | ATTGGCGTTGATGCTTCAAC+TGG | + | chr7.2:9082834-9082853 | MS.gene020546:CDS | 45.0% |
| !! | TTCTTGATGAGTACTGAGGG+AGG | + | chr7.2:9084558-9084577 | MS.gene020546:CDS | 45.0% |
| AAGACCAGGGAAGGAAAAGC+AGG | + | chr7.2:9083745-9083764 | MS.gene020546:CDS | 50.0% | |
| ACAGTAACAGCAGCAACAGC+AGG | - | chr7.2:9082729-9082748 | None:intergenic | 50.0% | |
| ! | AGGAGTTGAAGCACTAGTGG+TGG | - | chr7.2:9082775-9082794 | None:intergenic | 50.0% |
| ! | GGAGTAGTGGAAGAAGCTTC+TGG | + | chr7.2:9084034-9084053 | MS.gene020546:CDS | 50.0% |
| ! | GTGTTGTTGATGTGGGTTGC+CGG | - | chr7.2:9082628-9082647 | None:intergenic | 50.0% |
| ! | TGAAGCACTAGTGGTGGTGT+TGG | - | chr7.2:9082769-9082788 | None:intergenic | 50.0% |
| !! | TCTTCCTGCTTTTCCTTCCC+TGG | - | chr7.2:9083752-9083771 | None:intergenic | 50.0% |
| CTCCGCCGTAGGGAAATTGT+TGG | - | chr7.2:9082595-9082614 | None:intergenic | 55.0% | |
| ! | TTGTTGATGTGGGTTGCCGG+CGG | - | chr7.2:9082625-9082644 | None:intergenic | 55.0% |
| !! | AGTGGTGGTGTTGGTAGGAG+TGG | - | chr7.2:9082760-9082779 | None:intergenic | 55.0% |
| !! | GCACTAGTGGTGGTGTTGGT+AGG | - | chr7.2:9082765-9082784 | None:intergenic | 55.0% |
| ! | TGTTGATGTGGGTTGCCGGC+GGG | - | chr7.2:9082624-9082643 | None:intergenic | 60.0% |
| CGGGGAATAGCTCCGCCGTA+GGG | - | chr7.2:9082605-9082624 | None:intergenic | 65.0% | |
| ! | GTTGATGTGGGTTGCCGGCG+GGG | - | chr7.2:9082623-9082642 | None:intergenic | 65.0% |
| ACGGCGGAGCTATTCCCCGC+CGG | + | chr7.2:9082606-9082625 | MS.gene020546:CDS | 70.0% | |
| GCGGGGAATAGCTCCGCCGT+AGG | - | chr7.2:9082606-9082625 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 9082504 | 9084635 | 9082504 | ID=MS.gene020546 |
| chr7.2 | mRNA | 9082504 | 9084635 | 9082504 | ID=MS.gene020546.t1;Parent=MS.gene020546 |
| chr7.2 | exon | 9082504 | 9082964 | 9082504 | ID=MS.gene020546.t1.exon1;Parent=MS.gene020546.t1 |
| chr7.2 | CDS | 9082504 | 9082964 | 9082504 | ID=cds.MS.gene020546.t1;Parent=MS.gene020546.t1 |
| chr7.2 | exon | 9083663 | 9084635 | 9083663 | ID=MS.gene020546.t1.exon2;Parent=MS.gene020546.t1 |
| chr7.2 | CDS | 9083663 | 9084635 | 9083663 | ID=cds.MS.gene020546.t1;Parent=MS.gene020546.t1 |
| Gene Sequence |
| Protein sequence |
