Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020553.t1 | RHN48623.1 | 99.7 | 289 | 1 | 0 | 1 | 289 | 1 | 289 | 1.60E-124 | 455.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020553.t1 | Q6V9I6 | 51.0 | 290 | 117 | 8 | 1 | 288 | 1 | 267 | 6.0e-35 | 149.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020553.t1 | A0A396H772 | 99.7 | 289 | 1 | 0 | 1 | 289 | 1 | 289 | 1.2e-124 | 455.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene020553.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020553.t1 | MTR_2g084815 | 43.087 | 311 | 146 | 7 | 1 | 289 | 1 | 302 | 3.07e-52 | 173 |
MS.gene020553.t1 | MTR_2g084815 | 40.193 | 311 | 132 | 7 | 1 | 289 | 1 | 279 | 1.36e-44 | 152 |
MS.gene020553.t1 | MTR_2g084815 | 43.725 | 247 | 113 | 6 | 1 | 225 | 1 | 243 | 1.63e-33 | 123 |
MS.gene020553.t1 | MTR_4g055440 | 39.200 | 250 | 133 | 6 | 1 | 247 | 5 | 238 | 5.60e-33 | 122 |
MS.gene020553.t1 | MTR_2g084815 | 50.376 | 133 | 58 | 3 | 1 | 129 | 1 | 129 | 1.30e-30 | 115 |
MS.gene020553.t1 | MTR_4g055450 | 44.211 | 95 | 39 | 2 | 2 | 94 | 6 | 88 | 5.84e-17 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020553.t1 | AT5G03740 | 44.040 | 302 | 145 | 10 | 1 | 288 | 1 | 292 | 1.51e-47 | 160 |
MS.gene020553.t1 | AT3G44750 | 55.319 | 94 | 41 | 1 | 1 | 94 | 1 | 93 | 1.69e-27 | 107 |
MS.gene020553.t1 | AT3G44750 | 55.319 | 94 | 41 | 1 | 1 | 94 | 1 | 93 | 1.81e-27 | 107 |
MS.gene020553.t1 | AT5G22650 | 36.054 | 294 | 152 | 9 | 1 | 269 | 1 | 283 | 7.45e-25 | 101 |
MS.gene020553.t1 | AT5G22650 | 36.120 | 299 | 146 | 11 | 1 | 269 | 1 | 284 | 2.08e-23 | 97.8 |
MS.gene020553.t1 | AT2G27840 | 42.708 | 96 | 51 | 3 | 1 | 94 | 1 | 94 | 4.71e-17 | 77.0 |
MS.gene020553.t1 | AT2G27840 | 42.708 | 96 | 51 | 3 | 1 | 94 | 1 | 94 | 6.74e-17 | 77.8 |
MS.gene020553.t1 | AT2G27840 | 42.708 | 96 | 51 | 3 | 1 | 94 | 1 | 94 | 2.34e-16 | 74.7 |
Find 66 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTGCAGTCATGGAGTTT+TGG | 0.186768 | 7.2:+9182572 | None:intergenic |
CGCTCCCATATTTCCAGTTA+TGG | 0.260338 | 7.2:-9184194 | None:intergenic |
CTATCCCATAACTGGAAATA+TGG | 0.264248 | 7.2:+9184189 | MS.gene020553:CDS |
CTTTATATGACAGGCATGTT+TGG | 0.291541 | 7.2:+9184026 | MS.gene020553:intron |
TTTGGAGTCTCCTGCTTCTC+TGG | 0.303491 | 7.2:-9186432 | None:intergenic |
TTTATATGACAGGCATGTTT+GGG | 0.313274 | 7.2:+9184027 | MS.gene020553:intron |
TGCCTTAGGTTCTCATAATA+AGG | 0.315168 | 7.2:+9186599 | MS.gene020553:CDS |
CAACTCCAATCACCTGTTAC+AGG | 0.322194 | 7.2:-9186481 | None:intergenic |
CAATATAAAATAGTATTAAA+AGG | 0.325816 | 7.2:-9184267 | None:intergenic |
CCTTCACTTGGCACTGTGCT+TGG | 0.346567 | 7.2:-9186622 | None:intergenic |
GGGGAGGTCAGCAAGGATAA+AGG | 0.362925 | 7.2:+9184048 | MS.gene020553:CDS |
AATTTGAGCTATCCCATAAC+TGG | 0.378730 | 7.2:+9184181 | MS.gene020553:CDS |
GCAGATTTACCAGCCTGCTT+AGG | 0.386812 | 7.2:-9186393 | None:intergenic |
GCTCCCATATTTCCAGTTAT+GGG | 0.386902 | 7.2:-9184193 | None:intergenic |
TGATGCATTTACAACGGGTT+TGG | 0.397107 | 7.2:-9184670 | None:intergenic |
TAGTCTCCAGTTACCTTCTT+CGG | 0.410069 | 7.2:-9185611 | None:intergenic |
AAAGGATATGAATCATGTTC+CGG | 0.414891 | 7.2:-9184249 | None:intergenic |
TTTGCCTTCTTCACAGGTAC+AGG | 0.429781 | 7.2:-9185733 | None:intergenic |
TTTAAGACTGAAGATGCCTT+AGG | 0.434410 | 7.2:+9186585 | MS.gene020553:CDS |
CAGATTTACCAGCCTGCTTA+GGG | 0.438934 | 7.2:-9186392 | None:intergenic |
ACAGCTGCAAGCCCTGTAAC+AGG | 0.439457 | 7.2:+9186469 | MS.gene020553:CDS |
CACAGGTACAGGTGTTTCCT+TGG | 0.451744 | 7.2:-9185722 | None:intergenic |
ATTCCACTTAATGCTGCTAA+TGG | 0.460106 | 7.2:+9184534 | MS.gene020553:CDS |
GACCATCAAACTTCACATAC+AGG | 0.460737 | 7.2:-9184086 | None:intergenic |
AACTTCACATACAGGGATAC+CGG | 0.463337 | 7.2:-9184078 | None:intergenic |
TAATAAGCAGCCAGAGAAGC+AGG | 0.473969 | 7.2:+9186422 | MS.gene020553:CDS |
TTACCATTAGCAGCATTAAG+TGG | 0.478094 | 7.2:-9184537 | None:intergenic |
GGGAGGTCAGCAAGGATAAA+GGG | 0.482905 | 7.2:+9184049 | MS.gene020553:CDS |
ATTTAGAATCGAATGCGAAC+CGG | 0.485135 | 7.2:+9184230 | MS.gene020553:CDS |
TCCCTGTATGTGAAGTTTGA+TGG | 0.494576 | 7.2:+9184084 | MS.gene020553:CDS |
TATCCCATAACTGGAAATAT+GGG | 0.497848 | 7.2:+9184190 | MS.gene020553:CDS |
TTAGGTGTTGAGGTAAAACT+TGG | 0.502777 | 7.2:+9183866 | MS.gene020553:intron |
CTGTAATCTCCACTAGACTT+TGG | 0.505848 | 7.2:-9186450 | None:intergenic |
TTACCAGCCTGCTTAGGGTA+AGG | 0.510729 | 7.2:-9186387 | None:intergenic |
GATGGTCAGAAGCTTCAACT+TGG | 0.513400 | 7.2:+9184102 | MS.gene020553:CDS |
GGCCTTATTATGAGAACCTA+AGG | 0.516695 | 7.2:-9186601 | None:intergenic |
AACACCTGTACCTGTGAAGA+AGG | 0.532518 | 7.2:+9185729 | MS.gene020553:CDS |
GCACCATTCACCTCCAACAC+AGG | 0.534916 | 7.2:-9184648 | None:intergenic |
TGATACTCCTTACCCTAAGC+AGG | 0.550019 | 7.2:+9186380 | MS.gene020553:CDS |
CCAAGCACAGTGCCAAGTGA+AGG | 0.555760 | 7.2:+9186622 | MS.gene020553:CDS |
TTTGTCACTCCAGAGAAGAC+TGG | 0.556582 | 7.2:+9185757 | MS.gene020553:CDS |
CGAGCTTATCCACATTTCAT+CGG | 0.569171 | 7.2:+9183919 | MS.gene020553:CDS |
TTTAGATACTGATTCTGAAG+AGG | 0.569513 | 7.2:+9184506 | MS.gene020553:intron |
CAGTTCAGATTCATCTGATG+AGG | 0.575058 | 7.2:+9184731 | MS.gene020553:CDS |
TGTAGGGAAACCTGTGTTGG+AGG | 0.575298 | 7.2:+9184638 | MS.gene020553:intron |
ACTCCTTACCCTAAGCAGGC+TGG | 0.582053 | 7.2:+9186384 | MS.gene020553:CDS |
AAACCTGTGTTGGAGGTGAA+TGG | 0.584764 | 7.2:+9184645 | MS.gene020553:CDS |
TTATGTAGGGAAACCTGTGT+TGG | 0.588328 | 7.2:+9184635 | MS.gene020553:intron |
GTCGTTTAGCTCATGGCGAA+TGG | 0.589514 | 7.2:+9185533 | MS.gene020553:intron |
AACTCCAATCACCTGTTACA+GGG | 0.600270 | 7.2:-9186480 | None:intergenic |
CAGGAGACTCCAAAGTCTAG+TGG | 0.603055 | 7.2:+9186441 | MS.gene020553:CDS |
GAGGGTTGCTGAATCTTCCA+AGG | 0.606410 | 7.2:+9185705 | MS.gene020553:CDS |
AGACTGAAGGGAGCAACAAG+AGG | 0.612717 | 7.2:+9185686 | MS.gene020553:intron |
TGAGGATTCTAGTGAAGATG+AGG | 0.614205 | 7.2:+9184749 | MS.gene020553:CDS |
AAGCATATACCGATGAAATG+TGG | 0.617686 | 7.2:-9183928 | None:intergenic |
AAAACTTGGTGAATCACTCA+AGG | 0.619144 | 7.2:+9183880 | MS.gene020553:CDS |
TGATGAGGAGACACCGAAGA+AGG | 0.620434 | 7.2:+9185598 | MS.gene020553:CDS |
ACTTCACATACAGGGATACC+GGG | 0.620641 | 7.2:-9184077 | None:intergenic |
GACTGAAGGGAGCAACAAGA+GGG | 0.623418 | 7.2:+9185687 | MS.gene020553:intron |
ACCATCAAACTTCACATACA+GGG | 0.624265 | 7.2:-9184085 | None:intergenic |
AAGCGATGAAGATTCTGATG+AGG | 0.625838 | 7.2:+9185583 | MS.gene020553:CDS |
TATATGACAGGCATGTTTGG+GGG | 0.631765 | 7.2:+9184029 | MS.gene020553:intron |
TTATATGACAGGCATGTTTG+GGG | 0.632570 | 7.2:+9184028 | MS.gene020553:intron |
CAAGGATAAAGGGAGTGACC+CGG | 0.634157 | 7.2:+9184059 | MS.gene020553:CDS |
ACCAAATCAAAAGATGTCTG+AGG | 0.650289 | 7.2:-9184147 | None:intergenic |
TAGGGTAAGGAGTATCAACG+TGG | 0.788217 | 7.2:-9186374 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATATTTAAAATATTTAAT+TGG | - | chr7.2:9185384-9185403 | None:intergenic | 0.0% |
!! | CAATATAAAATAGTATTAAA+AGG | - | chr7.2:9184270-9184289 | None:intergenic | 10.0% |
!!! | TATTTTGTTAAATAATAACA+TGG | + | chr7.2:9183711-9183730 | MS.gene020553:intron | 10.0% |
!! | ATATTTGTACCAAAAATTAA+TGG | + | chr7.2:9185028-9185047 | MS.gene020553:intron | 15.0% |
!! | CTCAAAATTAAATTCAAATT+CGG | - | chr7.2:9185657-9185676 | None:intergenic | 15.0% |
!! | TCAATAAAAAATTCAGTAAT+CGG | - | chr7.2:9185485-9185504 | None:intergenic | 15.0% |
!! | TTAATTTAATGATTGAATCA+GGG | + | chr7.2:9185407-9185426 | MS.gene020553:intron | 15.0% |
!!! | ATATCTTATTTTATCAATGT+TGG | - | chr7.2:9185909-9185928 | None:intergenic | 15.0% |
!!! | ATTACTGAATTTTTTATTGA+AGG | + | chr7.2:9185485-9185504 | MS.gene020553:intron | 15.0% |
!!! | CATATATAACCATTAATTTT+TGG | - | chr7.2:9185040-9185059 | None:intergenic | 15.0% |
!!! | TGTTTTCTAAAGAAATTTTT+TGG | - | chr7.2:9185009-9185028 | None:intergenic | 15.0% |
!!! | TGTTTTTGTTTTTTTCAAAA+AGG | - | chr7.2:9182682-9182701 | None:intergenic | 15.0% |
!!! | TTTCAATATATAATGGATAT+TGG | + | chr7.2:9184796-9184815 | MS.gene020553:intron | 15.0% |
!! | AAAAATGTAAAGTGATAGAA+AGG | - | chr7.2:9182617-9182636 | None:intergenic | 20.0% |
!! | AAGATAAAAGAATGTAGTTA+AGG | - | chr7.2:9184360-9184379 | None:intergenic | 20.0% |
!! | AGATAAAAAAAATCCAAAGA+AGG | - | chr7.2:9183798-9183817 | None:intergenic | 20.0% |
!! | ATACATGCTTAAACAAAATT+AGG | - | chr7.2:9182972-9182991 | None:intergenic | 20.0% |
!! | ATGAAAAACTGAATAACAAA+TGG | - | chr7.2:9183563-9183582 | None:intergenic | 20.0% |
!! | GTTAATTTAATGATTGAATC+AGG | + | chr7.2:9185406-9185425 | MS.gene020553:intron | 20.0% |
!! | TAATTTAATGATTGAATCAG+GGG | + | chr7.2:9185408-9185427 | MS.gene020553:intron | 20.0% |
!! | TCTTGTTGCTAAATTAATAT+TGG | + | chr7.2:9183815-9183834 | MS.gene020553:intron | 20.0% |
!! | TTGAATTAAATGAAATGCTA+CGG | + | chr7.2:9184908-9184927 | MS.gene020553:intron | 20.0% |
!! | TTTCATGTATAAATATCGTT+AGG | + | chr7.2:9182767-9182786 | MS.gene020553:intron | 20.0% |
!!! | AAGTGGATTTCAATATATAA+TGG | + | chr7.2:9184789-9184808 | MS.gene020553:intron | 20.0% |
!!! | AATAACATGGTTTTTAAGAT+GGG | + | chr7.2:9183724-9183743 | MS.gene020553:intron | 20.0% |
!!! | ATAAACTATTCTCAGTTTTA+TGG | - | chr7.2:9183242-9183261 | None:intergenic | 20.0% |
!!! | ATTGTTCTAAACATTTATGT+AGG | + | chr7.2:9184621-9184640 | MS.gene020553:intron | 20.0% |
!!! | CGTTAATGTTTTTGTATAAA+TGG | + | chr7.2:9183995-9184014 | MS.gene020553:intron | 20.0% |
!!! | TAATAACATGGTTTTTAAGA+TGG | + | chr7.2:9183723-9183742 | MS.gene020553:intron | 20.0% |
!!! | TTGTTATTCAGTTTTTCATT+TGG | + | chr7.2:9183564-9183583 | MS.gene020553:intron | 20.0% |
!!! | TTGTTCTAAACATTTATGTA+GGG | + | chr7.2:9184622-9184641 | MS.gene020553:intron | 20.0% |
!!! | TTTGTTTTCTAATTGTACTT+CGG | - | chr7.2:9186232-9186251 | None:intergenic | 20.0% |
! | AAAACAGAAAAAGAATCAGA+AGG | + | chr7.2:9184692-9184711 | MS.gene020553:CDS | 25.0% |
! | AAAACTAACAAACAAAGTAC+TGG | - | chr7.2:9185795-9185814 | None:intergenic | 25.0% |
! | AAAACTGAATAACAAATGGT+AGG | - | chr7.2:9183559-9183578 | None:intergenic | 25.0% |
! | AAACTGAATAACAAATGGTA+GGG | - | chr7.2:9183558-9183577 | None:intergenic | 25.0% |
! | AATCCACTTTCTAGATTATA+CGG | - | chr7.2:9184778-9184797 | None:intergenic | 25.0% |
! | AATTTAATGATTGAATCAGG+GGG | + | chr7.2:9185409-9185428 | MS.gene020553:intron | 25.0% |
! | ATATAAAACTCCTTTCATGA+GGG | - | chr7.2:9183680-9183699 | None:intergenic | 25.0% |
! | ATTAACAAAGTAGAACTGAA+AGG | + | chr7.2:9186308-9186327 | MS.gene020553:intron | 25.0% |
! | CAAAAACATTAACGATTCAA+TGG | - | chr7.2:9183989-9184008 | None:intergenic | 25.0% |
! | CTAAAAACTCATTCACATAA+AGG | - | chr7.2:9185235-9185254 | None:intergenic | 25.0% |
! | GACAATAGAAATGCATAAAA+TGG | - | chr7.2:9184577-9184596 | None:intergenic | 25.0% |
! | TAAAGGAAGTCAAAACAATT+TGG | - | chr7.2:9185218-9185237 | None:intergenic | 25.0% |
! | TAATATTGTGTTTCCTTCTT+TGG | + | chr7.2:9183782-9183801 | MS.gene020553:intron | 25.0% |
! | TAATGTCATCTAGATGTATA+AGG | + | chr7.2:9185932-9185951 | MS.gene020553:intron | 25.0% |
! | TACAGAATATTGTCAAATAG+CGG | - | chr7.2:9183086-9183105 | None:intergenic | 25.0% |
! | TACGGAAAAATACAAATGTA+GGG | + | chr7.2:9184926-9184945 | MS.gene020553:intron | 25.0% |
! | TTTAATATACGATGTAGACT+TGG | + | chr7.2:9185454-9185473 | MS.gene020553:intron | 25.0% |
!! | AAACTAACAAACAAAGTACT+GGG | - | chr7.2:9185794-9185813 | None:intergenic | 25.0% |
!! | ACGAGAATTATGATATTTTC+AGG | + | chr7.2:9186336-9186355 | MS.gene020553:intron | 25.0% |
!! | TTAGTGACAATTTTGTCTTT+TGG | + | chr7.2:9186171-9186190 | MS.gene020553:intron | 25.0% |
!!! | AAGGAGATTTTAGTTTGTTT+TGG | + | chr7.2:9185504-9185523 | MS.gene020553:intron | 25.0% |
!!! | ACATCTTTTGATTTGGTTTT+TGG | + | chr7.2:9184153-9184172 | MS.gene020553:CDS | 25.0% |
!!! | AGAATTATGATATTTTCAGG+TGG | + | chr7.2:9186339-9186358 | MS.gene020553:intron | 25.0% |
!!! | CATCTTTTGATTTGGTTTTT+GGG | + | chr7.2:9184154-9184173 | MS.gene020553:CDS | 25.0% |
!!! | GCAATATCAAATTATTTCTG+CGG | + | chr7.2:9183753-9183772 | MS.gene020553:intron | 25.0% |
!!! | TACACAACATTGATTTAAAC+AGG | - | chr7.2:9183004-9183023 | None:intergenic | 25.0% |
!!! | TGAGAGTTTTATTACACTTT+CGG | + | chr7.2:9183321-9183340 | MS.gene020553:intron | 25.0% |
!!! | TTGCAGTTTTTGGATAAAAA+TGG | + | chr7.2:9182792-9182811 | MS.gene020553:intron | 25.0% |
AAAACATTCCTGTGATGATT+CGG | + | chr7.2:9185076-9185095 | MS.gene020553:intron | 30.0% | |
AAAGGATATGAATCATGTTC+CGG | - | chr7.2:9184252-9184271 | None:intergenic | 30.0% | |
AACTGAATAACAAATGGTAG+GGG | - | chr7.2:9183557-9183576 | None:intergenic | 30.0% | |
AATACTAATTGGGTAGAAGA+AGG | + | chr7.2:9184956-9184975 | MS.gene020553:intron | 30.0% | |
AATGTAAAGTGATAGAAAGG+AGG | - | chr7.2:9182614-9182633 | None:intergenic | 30.0% | |
ACATTCCTACTTAAAAGTGA+AGG | + | chr7.2:9185172-9185191 | MS.gene020553:intron | 30.0% | |
ACTTACAAAATAGATGAAGC+TGG | + | chr7.2:9185108-9185127 | MS.gene020553:intron | 30.0% | |
ATATTAGAACGCATTGTTGT+TGG | - | chr7.2:9184317-9184336 | None:intergenic | 30.0% | |
CAATGGAATAGAAACTAAAG+AGG | - | chr7.2:9183654-9183673 | None:intergenic | 30.0% | |
CTACGGAAAAATACAAATGT+AGG | + | chr7.2:9184925-9184944 | MS.gene020553:intron | 30.0% | |
GATAAGAGTTATCAACTATG+TGG | + | chr7.2:9185357-9185376 | MS.gene020553:intron | 30.0% | |
GATATAAAACTCCTTTCATG+AGG | - | chr7.2:9183681-9183700 | None:intergenic | 30.0% | |
GTCAGAAAATATTTAACACG+TGG | - | chr7.2:9186136-9186155 | None:intergenic | 30.0% | |
GTCTCAAATCTTTATATGAC+AGG | + | chr7.2:9184017-9184036 | MS.gene020553:intron | 30.0% | |
TAACCGTATAATCTAGAAAG+TGG | + | chr7.2:9184772-9184791 | MS.gene020553:intron | 30.0% | |
TATAAAACTCCTTTCATGAG+GGG | - | chr7.2:9183679-9183698 | None:intergenic | 30.0% | |
TATCCCATAACTGGAAATAT+GGG | + | chr7.2:9184190-9184209 | MS.gene020553:CDS | 30.0% | |
TGCATAAAATTGCATTGTTG+TGG | + | chr7.2:9185992-9186011 | MS.gene020553:intron | 30.0% | |
TTATGCAATAACAGTGCAAA+GGG | - | chr7.2:9185979-9185998 | None:intergenic | 30.0% | |
TTCGACACTAATGTTGTATA+CGG | + | chr7.2:9185857-9185876 | MS.gene020553:intron | 30.0% | |
TTGTTAAATTGCAACTACAG+CGG | - | chr7.2:9183167-9183186 | None:intergenic | 30.0% | |
TTTAATTCAATAACTGCAGC+TGG | - | chr7.2:9184898-9184917 | None:intergenic | 30.0% | |
TTTATATGACAGGCATGTTT+GGG | + | chr7.2:9184027-9184046 | MS.gene020553:intron | 30.0% | |
TTTATGCAATAACAGTGCAA+AGG | - | chr7.2:9185980-9185999 | None:intergenic | 30.0% | |
! | TAAAAATGGTGGAAATGTGA+TGG | + | chr7.2:9182806-9182825 | MS.gene020553:intron | 30.0% |
! | TACAACATTAGTGTCGAATA+AGG | - | chr7.2:9185855-9185874 | None:intergenic | 30.0% |
! | TCACAAATCACTATCCTTTT+AGG | + | chr7.2:9183848-9183867 | MS.gene020553:intron | 30.0% |
! | TGTTTAGAACAATATGACAC+AGG | - | chr7.2:9184614-9184633 | None:intergenic | 30.0% |
!! | AAACACCTTCACTTTTAAGT+AGG | - | chr7.2:9185180-9185199 | None:intergenic | 30.0% |
!! | AACTAACAAACAAAGTACTG+GGG | - | chr7.2:9185793-9185812 | None:intergenic | 30.0% |
!! | CAGTTTTTGGATAAAAATGG+TGG | + | chr7.2:9182795-9182814 | MS.gene020553:intron | 30.0% |
!! | GAAAGGAGTTTTATATCACT+GGG | + | chr7.2:9183684-9183703 | MS.gene020553:intron | 30.0% |
!! | TGAAAGGAGTTTTATATCAC+TGG | + | chr7.2:9183683-9183702 | MS.gene020553:intron | 30.0% |
!! | TTTAGATACTGATTCTGAAG+AGG | + | chr7.2:9184506-9184525 | MS.gene020553:intron | 30.0% |
!!! | AGAGTTTTATTACACTTTCG+GGG | + | chr7.2:9183323-9183342 | MS.gene020553:intron | 30.0% |
!!! | CACAATTTTATTTTGACTGC+AGG | + | chr7.2:9186559-9186578 | MS.gene020553:intron | 30.0% |
!!! | CTGTTTTGATGCATTTACAA+CGG | - | chr7.2:9184679-9184698 | None:intergenic | 30.0% |
!!! | GAGAGTTTTATTACACTTTC+GGG | + | chr7.2:9183322-9183341 | MS.gene020553:intron | 30.0% |
!!! | GAGTTTTGTTTTAGACTGAA+GGG | + | chr7.2:9185674-9185693 | MS.gene020553:intron | 30.0% |
!!! | TGAGTTTTGTTTTAGACTGA+AGG | + | chr7.2:9185673-9185692 | MS.gene020553:intron | 30.0% |
!!! | TGTTTTGATGCATTTACAAC+GGG | - | chr7.2:9184678-9184697 | None:intergenic | 30.0% |
AAAAACTAACCAGTCTTCTC+TGG | - | chr7.2:9185769-9185788 | None:intergenic | 35.0% | |
AAAATACAAATGTAGGGCAC+TGG | + | chr7.2:9184932-9184951 | MS.gene020553:intron | 35.0% | |
AAACATTCCTGTGATGATTC+GGG | + | chr7.2:9185077-9185096 | MS.gene020553:intron | 35.0% | |
AACTACTTTGTGACTTATGC+TGG | + | chr7.2:9186085-9186104 | MS.gene020553:intron | 35.0% | |
AAGCATATACCGATGAAATG+TGG | - | chr7.2:9183931-9183950 | None:intergenic | 35.0% | |
AATTTGAGCTATCCCATAAC+TGG | + | chr7.2:9184181-9184200 | MS.gene020553:CDS | 35.0% | |
ACAAAATAGATGAAGCTGGT+CGG | + | chr7.2:9185112-9185131 | MS.gene020553:intron | 35.0% | |
ACAAATTAACGAGTCCAATG+AGG | - | chr7.2:9186274-9186293 | None:intergenic | 35.0% | |
ACAGGATTATGAGGACAATT+TGG | - | chr7.2:9185315-9185334 | None:intergenic | 35.0% | |
ACCAAATCAAAAGATGTCTG+AGG | - | chr7.2:9184150-9184169 | None:intergenic | 35.0% | |
ACCATCAAACTTCACATACA+GGG | - | chr7.2:9184088-9184107 | None:intergenic | 35.0% | |
ACCATGAAAACAGGATTATG+AGG | - | chr7.2:9185324-9185343 | None:intergenic | 35.0% | |
AGATGTATAAGGTTTGACAG+TGG | + | chr7.2:9185943-9185962 | MS.gene020553:intron | 35.0% | |
AGTTGCTAGAATCATCTTGA+AGG | + | chr7.2:9183291-9183310 | MS.gene020553:intron | 35.0% | |
ATTCCACTTAATGCTGCTAA+TGG | + | chr7.2:9184534-9184553 | MS.gene020553:CDS | 35.0% | |
CACTTCGCATATTAAACGAT+AGG | + | chr7.2:9182740-9182759 | MS.gene020553:intron | 35.0% | |
CATCGAACAACTTTGTGTAT+CGG | - | chr7.2:9184864-9184883 | None:intergenic | 35.0% | |
CGTGAGGATGATGATAATTA+GGG | - | chr7.2:9182865-9182884 | None:intergenic | 35.0% | |
CTAAAGCACAAAAAGTTCTG+TGG | - | chr7.2:9182894-9182913 | None:intergenic | 35.0% | |
CTATCCCATAACTGGAAATA+TGG | + | chr7.2:9184189-9184208 | MS.gene020553:CDS | 35.0% | |
CTTTATATGACAGGCATGTT+TGG | + | chr7.2:9184026-9184045 | MS.gene020553:intron | 35.0% | |
GTCCAATGAGGTTAAACTAT+CGG | - | chr7.2:9186262-9186281 | None:intergenic | 35.0% | |
GTTGCTAGAATCATCTTGAA+GGG | + | chr7.2:9183292-9183311 | MS.gene020553:intron | 35.0% | |
TAAGTGTGTATAGAACGATG+AGG | - | chr7.2:9186531-9186550 | None:intergenic | 35.0% | |
TAGAAGAAGGTAGGAATACT+TGG | + | chr7.2:9184969-9184988 | MS.gene020553:intron | 35.0% | |
TCGTGAGGATGATGATAATT+AGG | - | chr7.2:9182866-9182885 | None:intergenic | 35.0% | |
TGATAGAAAGGAGGAAGAAA+CGG | - | chr7.2:9182605-9182624 | None:intergenic | 35.0% | |
TGCCTTAGGTTCTCATAATA+AGG | + | chr7.2:9186599-9186618 | MS.gene020553:CDS | 35.0% | |
TGGATTGTTAAAATTCCGCT+AGG | + | chr7.2:9183035-9183054 | MS.gene020553:intron | 35.0% | |
TGTTGTGTAATTGCAGTTAG+TGG | + | chr7.2:9183015-9183034 | MS.gene020553:intron | 35.0% | |
TTACCATTAGCAGCATTAAG+TGG | - | chr7.2:9184540-9184559 | None:intergenic | 35.0% | |
TTATATGACAGGCATGTTTG+GGG | + | chr7.2:9184028-9184047 | MS.gene020553:intron | 35.0% | |
! | AAAACTTGGTGAATCACTCA+AGG | + | chr7.2:9183880-9183899 | MS.gene020553:CDS | 35.0% |
! | ACAAATTTTGCCTTCTTCAC+AGG | - | chr7.2:9185742-9185761 | None:intergenic | 35.0% |
! | ATTAGTGTCGAATAAGGCTT+AGG | - | chr7.2:9185849-9185868 | None:intergenic | 35.0% |
! | ATTTAGAATCGAATGCGAAC+CGG | + | chr7.2:9184230-9184249 | MS.gene020553:CDS | 35.0% |
! | CACAGAACTTTTTGTGCTTT+AGG | + | chr7.2:9182892-9182911 | MS.gene020553:intron | 35.0% |
! | CATAATCCTGTTTTCATGGT+CGG | + | chr7.2:9185324-9185343 | MS.gene020553:intron | 35.0% |
! | GTTTTACCTCAACACCTAAA+AGG | - | chr7.2:9183865-9183884 | None:intergenic | 35.0% |
! | TCCTCATAATCCTGTTTTCA+TGG | + | chr7.2:9185320-9185339 | MS.gene020553:intron | 35.0% |
! | TCGTTAGGTTTTGCAGTTTT+TGG | + | chr7.2:9182782-9182801 | MS.gene020553:intron | 35.0% |
! | TTAGTGTCGAATAAGGCTTA+GGG | - | chr7.2:9185848-9185867 | None:intergenic | 35.0% |
! | TTTAAGACTGAAGATGCCTT+AGG | + | chr7.2:9186585-9186604 | MS.gene020553:CDS | 35.0% |
!! | TCCTCAGACATCTTTTGATT+TGG | + | chr7.2:9184146-9184165 | MS.gene020553:CDS | 35.0% |
!! | TTAGGTGTTGAGGTAAAACT+TGG | + | chr7.2:9183866-9183885 | MS.gene020553:intron | 35.0% |
!!! | CGTTGTTTTGGACCTATAAA+AGG | + | chr7.2:9183348-9183367 | MS.gene020553:intron | 35.0% |
!!! | TTATGATATTTTCAGGTGGC+AGG | + | chr7.2:9186343-9186362 | MS.gene020553:intron | 35.0% |
AACTCCAATCACCTGTTACA+GGG | - | chr7.2:9186483-9186502 | None:intergenic | 40.0% | |
AACTTCACATACAGGGATAC+CGG | - | chr7.2:9184081-9184100 | None:intergenic | 40.0% | |
AAGCGATGAAGATTCTGATG+AGG | + | chr7.2:9185583-9185602 | MS.gene020553:CDS | 40.0% | |
ACCTATAAAAGGTCACTGGT+TGG | + | chr7.2:9183359-9183378 | MS.gene020553:intron | 40.0% | |
AGTGAAGATGAAGCTTCTGA+TGG | + | chr7.2:9184385-9184404 | MS.gene020553:intron | 40.0% | |
AGTGAATCGCAGAGTAATAG+TGG | + | chr7.2:9183115-9183134 | MS.gene020553:intron | 40.0% | |
ATGGAGCAGCTATTGCTTTA+TGG | + | chr7.2:9186059-9186078 | MS.gene020553:intron | 40.0% | |
CAGTTCAGATTCATCTGATG+AGG | + | chr7.2:9184731-9184750 | MS.gene020553:CDS | 40.0% | |
CGAGCTTATCCACATTTCAT+CGG | + | chr7.2:9183919-9183938 | MS.gene020553:CDS | 40.0% | |
CGATACACAAAGTTGTTCGA+TGG | + | chr7.2:9184862-9184881 | MS.gene020553:intron | 40.0% | |
CTAATTGGGTAGAAGAAGGT+AGG | + | chr7.2:9184960-9184979 | MS.gene020553:intron | 40.0% | |
CTGTAATCTCCACTAGACTT+TGG | - | chr7.2:9186453-9186472 | None:intergenic | 40.0% | |
GACCATCAAACTTCACATAC+AGG | - | chr7.2:9184089-9184108 | None:intergenic | 40.0% | |
GACCGATAGTTTAACCTCAT+TGG | + | chr7.2:9186257-9186276 | MS.gene020553:intron | 40.0% | |
GAGACATGAGGATCTAATAG+AGG | - | chr7.2:9183411-9183430 | None:intergenic | 40.0% | |
GAGGTTGAAAAAGACAGAAG+AGG | - | chr7.2:9183635-9183654 | None:intergenic | 40.0% | |
GCTCCCATATTTCCAGTTAT+GGG | - | chr7.2:9184196-9184215 | None:intergenic | 40.0% | |
GTTACAAAGTCAGAGACATG+AGG | - | chr7.2:9183423-9183442 | None:intergenic | 40.0% | |
TAGTCTCCAGTTACCTTCTT+CGG | - | chr7.2:9185614-9185633 | None:intergenic | 40.0% | |
TATATGACAGGCATGTTTGG+GGG | + | chr7.2:9184029-9184048 | MS.gene020553:intron | 40.0% | |
TCCCTGTATGTGAAGTTTGA+TGG | + | chr7.2:9184084-9184103 | MS.gene020553:CDS | 40.0% | |
TGAGGATTCTAGTGAAGATG+AGG | + | chr7.2:9184749-9184768 | MS.gene020553:CDS | 40.0% | |
TTATGTAGGGAAACCTGTGT+TGG | + | chr7.2:9184635-9184654 | MS.gene020553:intron | 40.0% | |
TTGGACCTATAAAAGGTCAC+TGG | + | chr7.2:9183355-9183374 | MS.gene020553:intron | 40.0% | |
TTGTCAAATAGCGGCTATAC+TGG | - | chr7.2:9183077-9183096 | None:intergenic | 40.0% | |
! | AAAGTGGTGAGAGTACATTG+TGG | - | chr7.2:9186031-9186050 | None:intergenic | 40.0% |
! | AAGTGGTGAGAGTACATTGT+GGG | - | chr7.2:9186030-9186049 | None:intergenic | 40.0% |
! | TAGTGTCGAATAAGGCTTAG+GGG | - | chr7.2:9185847-9185866 | None:intergenic | 40.0% |
! | TCCAACCAGTGACCTTTTAT+AGG | - | chr7.2:9183363-9183382 | None:intergenic | 40.0% |
! | TGATGCATTTACAACGGGTT+TGG | - | chr7.2:9184673-9184692 | None:intergenic | 40.0% |
!! | AGGGCACTGGTAATACTAAT+TGG | + | chr7.2:9184945-9184964 | MS.gene020553:intron | 40.0% |
!! | ATCGCAGAATTGGCTTGTAA+AGG | + | chr7.2:9183382-9183401 | MS.gene020553:intron | 40.0% |
!! | CACTATCCTTTTAGGTGTTG+AGG | + | chr7.2:9183856-9183875 | MS.gene020553:intron | 40.0% |
!! | CTTTTTGTGCTTTAGGTCAC+TGG | + | chr7.2:9182899-9182918 | MS.gene020553:intron | 40.0% |
!! | GGCCTTATTATGAGAACCTA+AGG | - | chr7.2:9186604-9186623 | None:intergenic | 40.0% |
!! | GGGCACTGGTAATACTAATT+GGG | + | chr7.2:9184946-9184965 | MS.gene020553:intron | 40.0% |
!! | GTAATGTGTCGTTTAGCTCA+TGG | + | chr7.2:9185526-9185545 | MS.gene020553:intron | 40.0% |
!! | GTATCGGCACAACATCTTTT+TGG | - | chr7.2:9184848-9184867 | None:intergenic | 40.0% |
!! | TGGATAAGCTCGCTATTTTC+TGG | - | chr7.2:9183911-9183930 | None:intergenic | 40.0% |
AAACCTGTGTTGGAGGTGAA+TGG | + | chr7.2:9184645-9184664 | MS.gene020553:CDS | 45.0% | |
AACACCTGTACCTGTGAAGA+AGG | + | chr7.2:9185729-9185748 | MS.gene020553:CDS | 45.0% | |
ACTTCACATACAGGGATACC+GGG | - | chr7.2:9184080-9184099 | None:intergenic | 45.0% | |
CAACTCCAATCACCTGTTAC+AGG | - | chr7.2:9186484-9186503 | None:intergenic | 45.0% | |
CAGATTTACCAGCCTGCTTA+GGG | - | chr7.2:9186395-9186414 | None:intergenic | 45.0% | |
CGCTCCCATATTTCCAGTTA+TGG | - | chr7.2:9184197-9184216 | None:intergenic | 45.0% | |
CTCACCACTTTGCCTATTCA+TGG | + | chr7.2:9186040-9186059 | MS.gene020553:intron | 45.0% | |
GATGGTCAGAAGCTTCAACT+TGG | + | chr7.2:9184102-9184121 | MS.gene020553:CDS | 45.0% | |
GCAATAGCTGCTCCATGAAT+AGG | - | chr7.2:9186055-9186074 | None:intergenic | 45.0% | |
GGTACTAATGCTGCTCATCT+TGG | + | chr7.2:9185878-9185897 | MS.gene020553:intron | 45.0% | |
GTGTGTATAGAACGATGAGG+AGG | - | chr7.2:9186528-9186547 | None:intergenic | 45.0% | |
TAATAAGCAGCCAGAGAAGC+AGG | + | chr7.2:9186422-9186441 | MS.gene020553:CDS | 45.0% | |
TCATGACCGACCATGAAAAC+AGG | - | chr7.2:9185333-9185352 | None:intergenic | 45.0% | |
TCCATTGTACCCCTCATGAA+AGG | + | chr7.2:9183667-9183686 | MS.gene020553:intron | 45.0% | |
TCTGTAACACTACAGCCTAG+CGG | - | chr7.2:9183053-9183072 | None:intergenic | 45.0% | |
TGATACTCCTTACCCTAAGC+AGG | + | chr7.2:9186380-9186399 | MS.gene020553:CDS | 45.0% | |
TGCTCCATGAATAGGCAAAG+TGG | - | chr7.2:9186047-9186066 | None:intergenic | 45.0% | |
TGTATAGAACGATGAGGAGG+AGG | - | chr7.2:9186525-9186544 | None:intergenic | 45.0% | |
TTTGCCTTCTTCACAGGTAC+AGG | - | chr7.2:9185736-9185755 | None:intergenic | 45.0% | |
TTTGTCACTCCAGAGAAGAC+TGG | + | chr7.2:9185757-9185776 | MS.gene020553:CDS | 45.0% | |
! | ACTTTCGGGGATCGTTGTTT+TGG | + | chr7.2:9183336-9183355 | MS.gene020553:intron | 45.0% |
! | AGTGGTGAGAGTACATTGTG+GGG | - | chr7.2:9186029-9186048 | None:intergenic | 45.0% |
! | AGTTCTGTGGAGTTTTCGTG+AGG | - | chr7.2:9182881-9182900 | None:intergenic | 45.0% |
! | GGCACTATCATAGCGGAATT+TGG | - | chr7.2:9183146-9183165 | None:intergenic | 45.0% |
! | TCCTTTCATGAGGGGTACAA+TGG | - | chr7.2:9183671-9183690 | None:intergenic | 45.0% |
!! | TAGGGTAAGGAGTATCAACG+TGG | - | chr7.2:9186377-9186396 | None:intergenic | 45.0% |
!!! | TATGGGAGCGTCTTCTTTTC+TGG | + | chr7.2:9184207-9184226 | MS.gene020553:CDS | 45.0% |
AGACTGAAGGGAGCAACAAG+AGG | + | chr7.2:9185686-9185705 | MS.gene020553:intron | 50.0% | |
AGGGGGCTATTGTGTCTTAG+TGG | + | chr7.2:9185426-9185445 | MS.gene020553:intron | 50.0% | |
ATTGCCACCCGAATCATCAC+AGG | - | chr7.2:9185087-9185106 | None:intergenic | 50.0% | |
CAAGCCCTGTAACAGGTGAT+TGG | + | chr7.2:9186476-9186495 | MS.gene020553:intron | 50.0% | |
CAAGGATAAAGGGAGTGACC+CGG | + | chr7.2:9184059-9184078 | MS.gene020553:CDS | 50.0% | |
CACAGGTACAGGTGTTTCCT+TGG | - | chr7.2:9185725-9185744 | None:intergenic | 50.0% | |
CAGGAGACTCCAAAGTCTAG+TGG | + | chr7.2:9186441-9186460 | MS.gene020553:CDS | 50.0% | |
CTACAGCGGCACTATCATAG+CGG | - | chr7.2:9183153-9183172 | None:intergenic | 50.0% | |
GACTGAAGGGAGCAACAAGA+GGG | + | chr7.2:9185687-9185706 | MS.gene020553:intron | 50.0% | |
GAGACACCGAAGAAGGTAAC+TGG | + | chr7.2:9185605-9185624 | MS.gene020553:intron | 50.0% | |
GAGGGTTGCTGAATCTTCCA+AGG | + | chr7.2:9185705-9185724 | MS.gene020553:CDS | 50.0% | |
GCAGATTTACCAGCCTGCTT+AGG | - | chr7.2:9186396-9186415 | None:intergenic | 50.0% | |
GGGAGGTCAGCAAGGATAAA+GGG | + | chr7.2:9184049-9184068 | MS.gene020553:CDS | 50.0% | |
TGATGAGGAGACACCGAAGA+AGG | + | chr7.2:9185598-9185617 | MS.gene020553:CDS | 50.0% | |
TGTAGGGAAACCTGTGTTGG+AGG | + | chr7.2:9184638-9184657 | MS.gene020553:intron | 50.0% | |
TTACCAGCCTGCTTAGGGTA+AGG | - | chr7.2:9186390-9186409 | None:intergenic | 50.0% | |
! | CACTGGTTGGATCGCAGAAT+TGG | + | chr7.2:9183372-9183391 | MS.gene020553:intron | 50.0% |
! | CATTCCTGTGATGATTCGGG+TGG | + | chr7.2:9185080-9185099 | MS.gene020553:intron | 50.0% |
! | GTCGTTTAGCTCATGGCGAA+TGG | + | chr7.2:9185533-9185552 | MS.gene020553:intron | 50.0% |
! | TTTGGAGTCTCCTGCTTCTC+TGG | - | chr7.2:9186435-9186454 | None:intergenic | 50.0% |
ACAGCTGCAAGCCCTGTAAC+AGG | + | chr7.2:9186469-9186488 | MS.gene020553:CDS | 55.0% | |
ACTCCTTACCCTAAGCAGGC+TGG | + | chr7.2:9186384-9186403 | MS.gene020553:CDS | 55.0% | |
ATGACAGGCATGTTTGGGGG+AGG | + | chr7.2:9184032-9184051 | MS.gene020553:intron | 55.0% | |
ATGTTTGGGGGAGGTCAGCA+AGG | + | chr7.2:9184041-9184060 | MS.gene020553:CDS | 55.0% | |
GCACCATTCACCTCCAACAC+AGG | - | chr7.2:9184651-9184670 | None:intergenic | 55.0% | |
GGGGAGGTCAGCAAGGATAA+AGG | + | chr7.2:9184048-9184067 | MS.gene020553:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 9182583 | 9186641 | 9182583 | ID=MS.gene020553 |
chr7.2 | mRNA | 9182583 | 9186641 | 9182583 | ID=MS.gene020553.t1;Parent=MS.gene020553 |
chr7.2 | exon | 9182583 | 9182595 | 9182583 | ID=MS.gene020553.t1.exon1;Parent=MS.gene020553.t1 |
chr7.2 | CDS | 9182583 | 9182595 | 9182583 | ID=cds.MS.gene020553.t1;Parent=MS.gene020553.t1 |
chr7.2 | exon | 9183870 | 9183940 | 9183870 | ID=MS.gene020553.t1.exon2;Parent=MS.gene020553.t1 |
chr7.2 | CDS | 9183870 | 9183940 | 9183870 | ID=cds.MS.gene020553.t1;Parent=MS.gene020553.t1 |
chr7.2 | exon | 9184039 | 9184288 | 9184039 | ID=MS.gene020553.t1.exon3;Parent=MS.gene020553.t1 |
chr7.2 | CDS | 9184039 | 9184288 | 9184039 | ID=cds.MS.gene020553.t1;Parent=MS.gene020553.t1 |
chr7.2 | exon | 9184511 | 9184555 | 9184511 | ID=MS.gene020553.t1.exon4;Parent=MS.gene020553.t1 |
chr7.2 | CDS | 9184511 | 9184555 | 9184511 | ID=cds.MS.gene020553.t1;Parent=MS.gene020553.t1 |
chr7.2 | exon | 9184643 | 9184770 | 9184643 | ID=MS.gene020553.t1.exon5;Parent=MS.gene020553.t1 |
chr7.2 | CDS | 9184643 | 9184770 | 9184643 | ID=cds.MS.gene020553.t1;Parent=MS.gene020553.t1 |
chr7.2 | exon | 9185542 | 9185619 | 9185542 | ID=MS.gene020553.t1.exon6;Parent=MS.gene020553.t1 |
chr7.2 | CDS | 9185542 | 9185619 | 9185542 | ID=cds.MS.gene020553.t1;Parent=MS.gene020553.t1 |
chr7.2 | exon | 9185688 | 9185778 | 9185688 | ID=MS.gene020553.t1.exon7;Parent=MS.gene020553.t1 |
chr7.2 | CDS | 9185688 | 9185778 | 9185688 | ID=cds.MS.gene020553.t1;Parent=MS.gene020553.t1 |
chr7.2 | exon | 9186358 | 9186490 | 9186358 | ID=MS.gene020553.t1.exon8;Parent=MS.gene020553.t1 |
chr7.2 | CDS | 9186358 | 9186490 | 9186358 | ID=cds.MS.gene020553.t1;Parent=MS.gene020553.t1 |
chr7.2 | exon | 9186581 | 9186641 | 9186581 | ID=MS.gene020553.t1.exon9;Parent=MS.gene020553.t1 |
chr7.2 | CDS | 9186581 | 9186641 | 9186581 | ID=cds.MS.gene020553.t1;Parent=MS.gene020553.t1 |
Gene Sequence |
Protein sequence |