Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020576.t1 | XP_013450066.1 | 98.5 | 131 | 1 | 1 | 1 | 131 | 1 | 130 | 9.80E-65 | 256.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020576.t1 | Q9LZR0 | 56.8 | 139 | 48 | 4 | 16 | 146 | 25 | 159 | 4.4e-29 | 129.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020576.t1 | A0A072U315 | 98.5 | 131 | 1 | 1 | 1 | 131 | 1 | 130 | 7.1e-65 | 256.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene020576.t1 | TF | HB-other |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020576.t1 | MTR_7g103340 | 97.279 | 147 | 3 | 1 | 1 | 147 | 1 | 146 | 1.08e-102 | 293 |
MS.gene020576.t1 | MTR_1g061660 | 62.667 | 150 | 49 | 4 | 1 | 149 | 1 | 144 | 6.82e-58 | 180 |
MS.gene020576.t1 | MTR_8g468210 | 44.853 | 136 | 58 | 3 | 21 | 149 | 44 | 169 | 9.64e-30 | 109 |
MS.gene020576.t1 | MTR_6g007647 | 57.895 | 95 | 32 | 2 | 62 | 149 | 32 | 125 | 3.01e-29 | 107 |
MS.gene020576.t1 | MTR_6g007647 | 57.895 | 95 | 32 | 2 | 62 | 149 | 66 | 159 | 4.18e-29 | 107 |
MS.gene020576.t1 | MTR_5g039000 | 50.000 | 106 | 45 | 2 | 51 | 149 | 65 | 169 | 1.74e-27 | 103 |
MS.gene020576.t1 | MTR_3g080100 | 57.778 | 90 | 37 | 1 | 56 | 145 | 13 | 101 | 6.15e-27 | 100 |
MS.gene020576.t1 | MTR_4g107650 | 56.842 | 95 | 33 | 2 | 62 | 149 | 94 | 187 | 8.92e-27 | 102 |
MS.gene020576.t1 | MTR_3g080100 | 57.778 | 90 | 37 | 1 | 56 | 145 | 52 | 140 | 1.37e-26 | 100 |
MS.gene020576.t1 | MTR_7g010020 | 55.769 | 104 | 37 | 3 | 51 | 146 | 67 | 169 | 1.10e-25 | 98.6 |
MS.gene020576.t1 | MTR_6g011610 | 57.143 | 84 | 35 | 1 | 62 | 145 | 95 | 177 | 1.30e-25 | 98.6 |
MS.gene020576.t1 | MTR_6g011610 | 58.537 | 82 | 33 | 1 | 62 | 143 | 76 | 156 | 1.64e-25 | 97.8 |
MS.gene020576.t1 | MTR_8g089895 | 48.077 | 104 | 52 | 2 | 40 | 143 | 32 | 133 | 2.53e-24 | 95.9 |
MS.gene020576.t1 | MTR_3g086790 | 51.546 | 97 | 44 | 2 | 41 | 135 | 36 | 131 | 5.60e-24 | 94.7 |
MS.gene020576.t1 | MTR_5g038280 | 52.747 | 91 | 35 | 2 | 63 | 146 | 87 | 176 | 1.45e-22 | 91.3 |
MS.gene020576.t1 | MTR_3g092150 | 54.321 | 81 | 36 | 1 | 65 | 145 | 40 | 119 | 2.07e-22 | 89.7 |
MS.gene020576.t1 | MTR_8g469430 | 50.000 | 94 | 39 | 2 | 63 | 149 | 89 | 181 | 1.37e-21 | 88.2 |
MS.gene020576.t1 | MTR_8g026960 | 48.193 | 83 | 35 | 2 | 67 | 142 | 38 | 119 | 9.14e-19 | 79.7 |
MS.gene020576.t1 | MTR_4g097600 | 45.055 | 91 | 49 | 1 | 56 | 146 | 120 | 209 | 4.90e-17 | 75.9 |
MS.gene020576.t1 | MTR_1g054285 | 45.055 | 91 | 49 | 1 | 56 | 146 | 147 | 236 | 1.28e-16 | 75.1 |
MS.gene020576.t1 | MTR_4g100550 | 46.429 | 84 | 44 | 1 | 63 | 146 | 120 | 202 | 2.02e-16 | 74.3 |
MS.gene020576.t1 | MTR_7g093430 | 44.944 | 89 | 48 | 1 | 58 | 146 | 155 | 242 | 3.19e-16 | 73.9 |
MS.gene020576.t1 | MTR_1g017090 | 43.000 | 100 | 56 | 1 | 47 | 146 | 114 | 212 | 4.30e-16 | 73.6 |
MS.gene020576.t1 | MTR_5g019680 | 44.828 | 87 | 47 | 1 | 63 | 149 | 53 | 138 | 4.39e-16 | 72.0 |
MS.gene020576.t1 | MTR_5g019650 | 47.619 | 84 | 43 | 1 | 63 | 146 | 53 | 135 | 1.44e-15 | 70.9 |
MS.gene020576.t1 | MTR_2g061030 | 42.708 | 96 | 54 | 1 | 51 | 146 | 188 | 282 | 4.08e-15 | 71.2 |
MS.gene020576.t1 | MTR_5g014890 | 46.154 | 91 | 47 | 2 | 56 | 146 | 117 | 205 | 7.33e-15 | 69.7 |
MS.gene020576.t1 | MTR_5g013010 | 46.429 | 84 | 44 | 1 | 63 | 146 | 136 | 218 | 1.33e-14 | 69.3 |
MS.gene020576.t1 | MTR_4g126900 | 46.914 | 81 | 42 | 1 | 66 | 146 | 91 | 170 | 3.61e-14 | 67.4 |
MS.gene020576.t1 | MTR_4g084750 | 43.011 | 93 | 51 | 2 | 54 | 146 | 57 | 147 | 8.68e-14 | 65.9 |
MS.gene020576.t1 | MTR_8g006705 | 44.048 | 84 | 46 | 1 | 63 | 146 | 146 | 228 | 1.59e-13 | 66.6 |
MS.gene020576.t1 | MTR_5g029320 | 39.806 | 103 | 58 | 2 | 51 | 150 | 77 | 178 | 1.57e-12 | 64.3 |
MS.gene020576.t1 | MTR_6g477820 | 42.391 | 92 | 50 | 2 | 61 | 150 | 28 | 118 | 2.79e-11 | 60.5 |
MS.gene020576.t1 | MTR_2g101720 | 45.783 | 83 | 43 | 2 | 66 | 148 | 145 | 225 | 3.62e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020576.t1 | AT5G03790 | 56.429 | 140 | 49 | 4 | 16 | 147 | 25 | 160 | 9.66e-42 | 137 |
MS.gene020576.t1 | AT5G03790 | 56.835 | 139 | 48 | 4 | 16 | 146 | 25 | 159 | 1.45e-41 | 139 |
MS.gene020576.t1 | AT2G36610 | 47.500 | 160 | 67 | 3 | 7 | 149 | 5 | 164 | 2.61e-38 | 129 |
MS.gene020576.t1 | AT1G69780 | 54.455 | 101 | 38 | 2 | 56 | 149 | 78 | 177 | 2.29e-28 | 106 |
MS.gene020576.t1 | AT5G15150 | 52.830 | 106 | 40 | 3 | 51 | 147 | 101 | 205 | 1.69e-26 | 101 |
MS.gene020576.t1 | AT5G65310 | 57.317 | 82 | 34 | 1 | 62 | 143 | 53 | 133 | 2.01e-25 | 98.6 |
MS.gene020576.t1 | AT5G65310 | 57.317 | 82 | 34 | 1 | 62 | 143 | 71 | 151 | 2.29e-25 | 98.6 |
MS.gene020576.t1 | AT3G01470 | 65.278 | 72 | 24 | 1 | 62 | 133 | 67 | 137 | 2.37e-25 | 97.8 |
MS.gene020576.t1 | AT4G40060 | 49.107 | 112 | 47 | 3 | 33 | 135 | 20 | 130 | 6.58e-25 | 97.1 |
MS.gene020576.t1 | AT2G22430 | 65.278 | 72 | 24 | 1 | 62 | 133 | 61 | 131 | 7.04e-25 | 97.4 |
MS.gene020576.t1 | AT3G01220 | 48.624 | 109 | 51 | 3 | 38 | 142 | 58 | 165 | 2.74e-23 | 92.8 |
MS.gene020576.t1 | AT1G26960 | 51.613 | 93 | 44 | 1 | 51 | 143 | 59 | 150 | 1.51e-22 | 90.1 |
MS.gene020576.t1 | AT2G46680 | 46.875 | 96 | 43 | 2 | 58 | 146 | 27 | 121 | 3.51e-22 | 89.4 |
MS.gene020576.t1 | AT4G36740 | 51.087 | 92 | 44 | 1 | 56 | 147 | 49 | 139 | 3.71e-22 | 88.2 |
MS.gene020576.t1 | AT4G36740 | 50.000 | 94 | 46 | 1 | 56 | 149 | 48 | 140 | 3.88e-22 | 88.2 |
MS.gene020576.t1 | AT2G46680 | 45.455 | 88 | 47 | 1 | 58 | 145 | 27 | 113 | 7.54e-22 | 88.2 |
MS.gene020576.t1 | AT3G61890 | 47.727 | 88 | 38 | 2 | 66 | 146 | 33 | 119 | 2.04e-20 | 84.3 |
MS.gene020576.t1 | AT1G27045 | 57.143 | 70 | 29 | 1 | 63 | 132 | 25 | 93 | 2.65e-19 | 80.1 |
MS.gene020576.t1 | AT1G27045 | 57.143 | 70 | 29 | 1 | 63 | 132 | 25 | 93 | 2.65e-19 | 80.1 |
MS.gene020576.t1 | AT1G27045 | 57.143 | 70 | 29 | 1 | 63 | 132 | 17 | 85 | 3.01e-19 | 79.7 |
MS.gene020576.t1 | AT2G18550 | 38.211 | 123 | 74 | 2 | 27 | 149 | 26 | 146 | 3.52e-19 | 80.5 |
MS.gene020576.t1 | AT1G27045 | 57.143 | 70 | 29 | 1 | 63 | 132 | 68 | 136 | 4.30e-19 | 80.5 |
MS.gene020576.t1 | AT1G27045 | 57.143 | 70 | 29 | 1 | 63 | 132 | 68 | 136 | 7.65e-19 | 80.5 |
MS.gene020576.t1 | AT5G66700 | 45.977 | 87 | 46 | 1 | 63 | 149 | 71 | 156 | 1.10e-17 | 76.6 |
MS.gene020576.t1 | AT5G06710 | 43.878 | 98 | 54 | 1 | 49 | 146 | 176 | 272 | 1.22e-16 | 75.5 |
MS.gene020576.t1 | AT5G53980 | 44.186 | 86 | 47 | 1 | 61 | 146 | 9 | 93 | 2.64e-16 | 71.6 |
MS.gene020576.t1 | AT4G16780 | 41.489 | 94 | 53 | 2 | 56 | 149 | 123 | 214 | 9.71e-15 | 69.7 |
MS.gene020576.t1 | AT2G22800 | 46.429 | 84 | 44 | 1 | 63 | 146 | 113 | 195 | 1.53e-14 | 68.9 |
MS.gene020576.t1 | AT3G60390 | 41.758 | 91 | 52 | 1 | 56 | 146 | 155 | 244 | 4.07e-14 | 68.2 |
MS.gene020576.t1 | AT4G37790 | 46.429 | 84 | 44 | 1 | 63 | 146 | 126 | 208 | 4.55e-14 | 67.8 |
MS.gene020576.t1 | AT2G44910 | 44.048 | 84 | 46 | 1 | 63 | 146 | 163 | 245 | 7.69e-14 | 67.4 |
MS.gene020576.t1 | AT5G47370 | 40.217 | 92 | 54 | 1 | 56 | 147 | 123 | 213 | 1.12e-13 | 66.6 |
MS.gene020576.t1 | AT2G01430 | 43.956 | 91 | 50 | 1 | 56 | 146 | 132 | 221 | 2.42e-13 | 65.9 |
MS.gene020576.t1 | AT4G17460 | 40.449 | 89 | 52 | 1 | 57 | 145 | 129 | 216 | 3.50e-13 | 65.5 |
MS.gene020576.t1 | AT1G79840 | 41.304 | 92 | 51 | 2 | 57 | 146 | 96 | 186 | 1.18e-12 | 64.7 |
MS.gene020576.t1 | AT1G79840 | 41.304 | 92 | 51 | 2 | 57 | 146 | 96 | 186 | 1.31e-12 | 64.7 |
MS.gene020576.t1 | AT1G79840 | 41.304 | 92 | 51 | 2 | 57 | 146 | 125 | 215 | 1.31e-12 | 64.7 |
MS.gene020576.t1 | AT1G79840 | 41.304 | 92 | 51 | 2 | 57 | 146 | 38 | 128 | 1.37e-12 | 64.3 |
MS.gene020576.t1 | AT1G79840 | 41.304 | 92 | 51 | 2 | 57 | 146 | 38 | 128 | 1.37e-12 | 64.3 |
MS.gene020576.t1 | AT1G79840 | 41.304 | 92 | 51 | 2 | 57 | 146 | 96 | 186 | 1.44e-12 | 64.3 |
MS.gene020576.t1 | AT5G06710 | 49.254 | 67 | 33 | 1 | 49 | 115 | 176 | 241 | 1.37e-11 | 60.8 |
MS.gene020576.t1 | AT1G73360 | 44.318 | 88 | 46 | 2 | 61 | 146 | 31 | 117 | 2.47e-11 | 60.8 |
Find 33 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAGCTTCATCTTCCTTTC+AGG | 0.091903 | 7.2:-9432290 | None:intergenic |
TCCACCTTGTACGCCTATTT+TGG | 0.171135 | 7.2:-9432358 | None:intergenic |
TTGCTGTTTGGTTCCAAAAT+AGG | 0.192526 | 7.2:+9432345 | MS.gene020576:CDS |
GATAATTAGGTACCTCTTCT+TGG | 0.238895 | 7.2:-9432457 | None:intergenic |
GGTCTAACTTTATTTCTTCT+TGG | 0.251946 | 7.2:-9432268 | None:intergenic |
TTTGGAACCAAACAGCAATT+TGG | 0.278055 | 7.2:-9432340 | None:intergenic |
TATAACAACACCCCTTATTC+AGG | 0.354916 | 7.2:+9431594 | MS.gene020576:CDS |
AAAGCTTCATCTTCCTTTCA+GGG | 0.372499 | 7.2:-9432289 | None:intergenic |
AACCTCGCCAAATTGCTGTT+TGG | 0.376064 | 7.2:+9432333 | MS.gene020576:CDS |
GGAAATGAGTCAACCGTCAT+TGG | 0.398063 | 7.2:+9432127 | MS.gene020576:CDS |
ATAGTTGTAGAAGAAGCTTA+AGG | 0.450197 | 7.2:-9431574 | None:intergenic |
ATGGATGAAATGAACATTGA+TGG | 0.450308 | 7.2:+9432179 | MS.gene020576:CDS |
AAGTAACCAGATTGATTCAC+TGG | 0.476965 | 7.2:+9432235 | MS.gene020576:CDS |
TCTTCTCCAGTGAATCAATC+TGG | 0.478388 | 7.2:-9432241 | None:intergenic |
AAACAGCAATTTGGCGAGGT+TGG | 0.478872 | 7.2:-9432331 | None:intergenic |
GGTTCCAAAATAGGCGTACA+AGG | 0.492609 | 7.2:+9432354 | MS.gene020576:CDS |
ATGTTCATTTCATCCATAGC+TGG | 0.495881 | 7.2:-9432173 | None:intergenic |
AGTGAAAGCCTAAAATGGAT+TGG | 0.500919 | 7.2:+9431511 | None:intergenic |
GACTCAGTATGAGGAACAAA+GGG | 0.509615 | 7.2:-9431549 | None:intergenic |
GAAATGAGTCAACCGTCATT+GGG | 0.510295 | 7.2:+9432128 | MS.gene020576:CDS |
CTTAAGGAAGACTCAGTATG+AGG | 0.527362 | 7.2:-9431558 | None:intergenic |
AGAATTTGATGTTGTCTCCA+AGG | 0.530430 | 7.2:+9432421 | MS.gene020576:CDS |
ACAAAGGTTACTTCCAGCTA+TGG | 0.541285 | 7.2:+9432160 | MS.gene020576:CDS |
AAATAAAGTTAGACCCTGAA+AGG | 0.563460 | 7.2:+9432276 | MS.gene020576:CDS |
AAGCTTTCAAGAGATCAGCT+AGG | 0.589198 | 7.2:+9432305 | MS.gene020576:CDS |
AGACTCAGTATGAGGAACAA+AGG | 0.595030 | 7.2:-9431550 | None:intergenic |
TGTTGTGTCTCACCCAATGA+CGG | 0.608704 | 7.2:-9432140 | None:intergenic |
AAATAGGCGTACAAGGTGGA+AGG | 0.609407 | 7.2:+9432361 | MS.gene020576:CDS |
AGCTTTCAAGAGATCAGCTA+GGG | 0.612608 | 7.2:+9432306 | MS.gene020576:CDS |
AAAACAGAAACTCCAAGAAG+AGG | 0.620624 | 7.2:+9432445 | MS.gene020576:CDS |
AACCAAACAGCAATTTGGCG+AGG | 0.655043 | 7.2:-9432335 | None:intergenic |
TCCAAAATAGGCGTACAAGG+TGG | 0.664815 | 7.2:+9432357 | MS.gene020576:CDS |
CATTGGGTGAGACACAACAA+AGG | 0.711095 | 7.2:+9432144 | MS.gene020576:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAGAAAAAAAAG+AGG | - | chr7.2:9431765-9431784 | None:intergenic | 10.0% |
!! | AAAAAAAAAGAAAAAAAAGA+GGG | - | chr7.2:9431764-9431783 | None:intergenic | 10.0% |
!! | CTGTATAAAAAAATTAATTA+TGG | + | chr7.2:9433217-9433236 | MS.gene020576:intron | 10.0% |
!! | AAAAAAAAGAAAAAAAAGAG+GGG | - | chr7.2:9431763-9431782 | None:intergenic | 15.0% |
!! | AAAAAAATTAATTATGGACA+TGG | + | chr7.2:9433223-9433242 | MS.gene020576:intron | 15.0% |
!! | AAAAATAGCTAAAAAAACAT+TGG | - | chr7.2:9431647-9431666 | None:intergenic | 15.0% |
!! | AGAAAAAAAAATTGTATGAT+AGG | + | chr7.2:9432000-9432019 | MS.gene020576:intron | 15.0% |
!! | GAAAAAAAAATTGTATGATA+GGG | + | chr7.2:9432001-9432020 | MS.gene020576:intron | 15.0% |
!! | TTATTCAAATTTATTGTCAT+TGG | + | chr7.2:9432082-9432101 | MS.gene020576:intron | 15.0% |
!!! | ATAATTCAACTTCTTTTTAT+AGG | - | chr7.2:9432624-9432643 | None:intergenic | 15.0% |
!!! | GAAAAATAGTAATTTTTGTA+AGG | - | chr7.2:9433091-9433110 | None:intergenic | 15.0% |
!! | AATAATACAACTCTAACAAA+TGG | - | chr7.2:9432942-9432961 | None:intergenic | 20.0% |
!! | CAAAAAATCCAAAGATAATT+AGG | - | chr7.2:9432473-9432492 | None:intergenic | 20.0% |
!! | TATAATGTAGAATATGTGTA+AGG | - | chr7.2:9433127-9433146 | None:intergenic | 20.0% |
!!! | AATTCAACTTTTTTCCTAAT+AGG | + | chr7.2:9432731-9432750 | MS.gene020576:intron | 20.0% |
!!! | ATTTGAAAACTACTCAATTT+TGG | + | chr7.2:9431819-9431838 | MS.gene020576:intron | 20.0% |
!!! | TATCTTTGGATTTTTTGTAT+AGG | + | chr7.2:9432476-9432495 | MS.gene020576:intron | 20.0% |
!!! | TGTTTTTTTTACCTGAATAA+GGG | - | chr7.2:9431608-9431627 | None:intergenic | 20.0% |
!!! | TTATGTGCTTTTTTCTATTT+CGG | + | chr7.2:9433187-9433206 | MS.gene020576:intron | 20.0% |
! | AAAAACATTGGAGTATAAAG+AGG | - | chr7.2:9431635-9431654 | None:intergenic | 25.0% |
! | AACAATTTATGAGATGCATA+TGG | + | chr7.2:9431937-9431956 | MS.gene020576:intron | 25.0% |
! | TAAAAATCACATAATGCAAG+AGG | - | chr7.2:9432599-9432618 | None:intergenic | 25.0% |
! | TACATAAATCAACCATTGTA+GGG | - | chr7.2:9433269-9433288 | None:intergenic | 25.0% |
!! | TGCTTTTCAATTCATATAGA+AGG | + | chr7.2:9431784-9431803 | MS.gene020576:intron | 25.0% |
!!! | GTGTTTTTTTTACCTGAATA+AGG | - | chr7.2:9431609-9431628 | None:intergenic | 25.0% |
!!! | GTTTTTTTTACCTGAATAAG+GGG | - | chr7.2:9431607-9431626 | None:intergenic | 25.0% |
!!! | TATGTGCTTTTTTCTATTTC+GGG | + | chr7.2:9433188-9433207 | MS.gene020576:intron | 25.0% |
AAAAAAGAGGGGAAATAACT+TGG | - | chr7.2:9431752-9431771 | None:intergenic | 30.0% | |
AAAAAGAGGGGAAATAACTT+GGG | - | chr7.2:9431751-9431770 | None:intergenic | 30.0% | |
AAATAAAGTTAGACCCTGAA+AGG | + | chr7.2:9432276-9432295 | MS.gene020576:CDS | 30.0% | |
ATAGTTGTAGAAGAAGCTTA+AGG | - | chr7.2:9431577-9431596 | None:intergenic | 30.0% | |
ATGGATGAAATGAACATTGA+TGG | + | chr7.2:9432179-9432198 | MS.gene020576:CDS | 30.0% | |
CATAAGTGAGTGTCTAATTA+AGG | - | chr7.2:9431848-9431867 | None:intergenic | 30.0% | |
CCTCAAACTTGAAATGTAAT+AGG | - | chr7.2:9432820-9432839 | None:intergenic | 30.0% | |
CTACATAAATCAACCATTGT+AGG | - | chr7.2:9433270-9433289 | None:intergenic | 30.0% | |
GAGAAATGGTATGAATATGA+TGG | + | chr7.2:9432044-9432063 | MS.gene020576:intron | 30.0% | |
! | GGTCTAACTTTATTTCTTCT+TGG | - | chr7.2:9432271-9432290 | None:intergenic | 30.0% |
!! | AAGAGGTACCTAATTATCTT+TGG | + | chr7.2:9432462-9432481 | MS.gene020576:intron | 30.0% |
!! | CCTATTACATTTCAAGTTTG+AGG | + | chr7.2:9432817-9432836 | MS.gene020576:intron | 30.0% |
!!! | ATGTGCTTTTTTCTATTTCG+GGG | + | chr7.2:9433189-9433208 | MS.gene020576:intron | 30.0% |
!!! | TTGGATTTTTTGTATAGGCT+AGG | + | chr7.2:9432481-9432500 | MS.gene020576:intron | 30.0% |
AAAACAGAAACTCCAAGAAG+AGG | + | chr7.2:9432445-9432464 | MS.gene020576:CDS | 35.0% | |
AAAGCTTCATCTTCCTTTCA+GGG | - | chr7.2:9432292-9432311 | None:intergenic | 35.0% | |
AAATCAGACTTACGCCTATT+AGG | - | chr7.2:9432748-9432767 | None:intergenic | 35.0% | |
AACCATTGTAGGGTAATACT+AGG | - | chr7.2:9433259-9433278 | None:intergenic | 35.0% | |
AACCTAGTATTACCCTACAA+TGG | + | chr7.2:9433254-9433273 | MS.gene020576:intron | 35.0% | |
AAGAAATGAAGGCAGAGAAA+TGG | + | chr7.2:9432030-9432049 | MS.gene020576:intron | 35.0% | |
AGAATTTGATGTTGTCTCCA+AGG | + | chr7.2:9432421-9432440 | MS.gene020576:CDS | 35.0% | |
ATAGGTCTCTAAGCTTCTAA+AGG | - | chr7.2:9432802-9432821 | None:intergenic | 35.0% | |
ATGTTCATTTCATCCATAGC+TGG | - | chr7.2:9432176-9432195 | None:intergenic | 35.0% | |
GATAATTAGGTACCTCTTCT+TGG | - | chr7.2:9432460-9432479 | None:intergenic | 35.0% | |
GTATGCTGGAAAATTAGGAA+TGG | + | chr7.2:9432106-9432125 | MS.gene020576:intron | 35.0% | |
TAGGGTGTACAAAGAAATGA+AGG | + | chr7.2:9432019-9432038 | MS.gene020576:intron | 35.0% | |
TATAACAACACCCCTTATTC+AGG | + | chr7.2:9431594-9431613 | MS.gene020576:CDS | 35.0% | |
TTATTGTCATTGGTGTATGC+TGG | + | chr7.2:9432092-9432111 | MS.gene020576:intron | 35.0% | |
TTGGTGTATGCTGGAAAATT+AGG | + | chr7.2:9432101-9432120 | MS.gene020576:intron | 35.0% | |
! | AAGTAACCAGATTGATTCAC+TGG | + | chr7.2:9432235-9432254 | MS.gene020576:CDS | 35.0% |
! | TTTGGAACCAAACAGCAATT+TGG | - | chr7.2:9432343-9432362 | None:intergenic | 35.0% |
!! | TTGCTGTTTGGTTCCAAAAT+AGG | + | chr7.2:9432345-9432364 | MS.gene020576:CDS | 35.0% |
!! | TTGGAGTTTCTGTTTTTCCT+TGG | - | chr7.2:9432441-9432460 | None:intergenic | 35.0% |
AAGCTTTCAAGAGATCAGCT+AGG | + | chr7.2:9432305-9432324 | MS.gene020576:CDS | 40.0% | |
ACAAAGGTTACTTCCAGCTA+TGG | + | chr7.2:9432160-9432179 | MS.gene020576:CDS | 40.0% | |
AGACTCAGTATGAGGAACAA+AGG | - | chr7.2:9431553-9431572 | None:intergenic | 40.0% | |
AGCTTTCAAGAGATCAGCTA+GGG | + | chr7.2:9432306-9432325 | MS.gene020576:CDS | 40.0% | |
CTTAAGGAAGACTCAGTATG+AGG | - | chr7.2:9431561-9431580 | None:intergenic | 40.0% | |
GAAAGCTTCATCTTCCTTTC+AGG | - | chr7.2:9432293-9432312 | None:intergenic | 40.0% | |
GAAATGAGTCAACCGTCATT+GGG | + | chr7.2:9432128-9432147 | MS.gene020576:CDS | 40.0% | |
GACTCAGTATGAGGAACAAA+GGG | - | chr7.2:9431552-9431571 | None:intergenic | 40.0% | |
TCTTCTCCAGTGAATCAATC+TGG | - | chr7.2:9432244-9432263 | None:intergenic | 40.0% | |
! | ATAATGCAAGAGGTACATGG+AGG | - | chr7.2:9432589-9432608 | None:intergenic | 40.0% |
! | CACATAATGCAAGAGGTACA+TGG | - | chr7.2:9432592-9432611 | None:intergenic | 40.0% |
! | TAATGCAAGAGGTACATGGA+GGG | - | chr7.2:9432588-9432607 | None:intergenic | 40.0% |
AAACAGCAATTTGGCGAGGT+TGG | - | chr7.2:9432334-9432353 | None:intergenic | 45.0% | |
AAATAGGCGTACAAGGTGGA+AGG | + | chr7.2:9432361-9432380 | MS.gene020576:CDS | 45.0% | |
AACCAAACAGCAATTTGGCG+AGG | - | chr7.2:9432338-9432357 | None:intergenic | 45.0% | |
CATTGGGTGAGACACAACAA+AGG | + | chr7.2:9432144-9432163 | MS.gene020576:CDS | 45.0% | |
GGAAATGAGTCAACCGTCAT+TGG | + | chr7.2:9432127-9432146 | MS.gene020576:CDS | 45.0% | |
GGTTCCAAAATAGGCGTACA+AGG | + | chr7.2:9432354-9432373 | MS.gene020576:CDS | 45.0% | |
TCCAAAATAGGCGTACAAGG+TGG | + | chr7.2:9432357-9432376 | MS.gene020576:CDS | 45.0% | |
TCTAGAGAGAGAGAGAGAGA+AGG | - | chr7.2:9431699-9431718 | None:intergenic | 45.0% | |
TGTTGTGTCTCACCCAATGA+CGG | - | chr7.2:9432143-9432162 | None:intergenic | 45.0% | |
! | AACCTCGCCAAATTGCTGTT+TGG | + | chr7.2:9432333-9432352 | MS.gene020576:CDS | 45.0% |
! | TCCACCTTGTACGCCTATTT+TGG | - | chr7.2:9432361-9432380 | None:intergenic | 45.0% |
!!! | ATTTATTTTTTTACTTTTTT+TGG | - | chr7.2:9432876-9432895 | None:intergenic | 5.0% |
!!! | TTTTATGTTTTTTTTTTTTT+TGG | - | chr7.2:9432663-9432682 | None:intergenic | 5.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 9431525 | 9433307 | 9431525 | ID=MS.gene020576 |
chr7.2 | mRNA | 9431525 | 9433307 | 9431525 | ID=MS.gene020576.t1;Parent=MS.gene020576 |
chr7.2 | exon | 9431525 | 9431615 | 9431525 | ID=MS.gene020576.t1.exon1;Parent=MS.gene020576.t1 |
chr7.2 | CDS | 9431525 | 9431615 | 9431525 | ID=cds.MS.gene020576.t1;Parent=MS.gene020576.t1 |
chr7.2 | exon | 9432123 | 9432466 | 9432123 | ID=MS.gene020576.t1.exon2;Parent=MS.gene020576.t1 |
chr7.2 | CDS | 9432123 | 9432466 | 9432123 | ID=cds.MS.gene020576.t1;Parent=MS.gene020576.t1 |
chr7.2 | exon | 9433290 | 9433307 | 9433290 | ID=MS.gene020576.t1.exon3;Parent=MS.gene020576.t1 |
chr7.2 | CDS | 9433290 | 9433307 | 9433290 | ID=cds.MS.gene020576.t1;Parent=MS.gene020576.t1 |
Gene Sequence |
Protein sequence |