AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020693

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020693.t1 MTR_5g094450 97.519 524 13 0 1 524 9 532 0.0 1067
MS.gene020693.t1 MTR_3g056110 66.728 541 156 8 1 524 9 542 0.0 715
MS.gene020693.t1 MTR_5g097480 58.195 543 196 8 5 524 10 544 0.0 616
MS.gene020693.t1 MTR_4g133660 54.545 473 207 5 53 523 76 542 1.67e-176 508
MS.gene020693.t1 MTR_2g082090 47.917 528 225 7 37 523 60 578 1.36e-164 479
MS.gene020693.t1 MTR_2g026250 55.670 388 167 3 138 524 213 596 1.72e-154 454
MS.gene020693.t1 MTR_3g089055 50.390 385 186 3 140 524 191 570 5.87e-137 408
MS.gene020693.t1 MTR_3g089055 50.390 385 186 3 140 524 186 565 9.42e-137 407
MS.gene020693.t1 MTR_1g029420 44.421 475 230 6 79 524 123 592 9.56e-135 403
MS.gene020693.t1 MTR_7g027190 36.410 390 220 4 150 524 297 673 8.18e-77 255
MS.gene020693.t1 MTR_8g442410 34.286 385 234 6 149 524 151 525 5.92e-68 228
MS.gene020693.t1 MTR_3g065980 35.696 395 211 10 150 524 169 540 2.01e-66 224
MS.gene020693.t1 MTR_4g064160 31.579 380 247 6 149 523 312 683 2.54e-60 211
MS.gene020693.t1 MTR_4g097080 30.789 380 250 5 151 524 131 503 6.57e-60 206
MS.gene020693.t1 MTR_2g097410 32.987 385 237 9 149 523 367 740 2.23e-59 209
MS.gene020693.t1 MTR_7g062120 30.203 394 261 7 135 524 357 740 3.61e-59 209
MS.gene020693.t1 MTR_7g074650 36.043 369 217 8 157 524 442 792 9.55e-59 208
MS.gene020693.t1 MTR_4g104020 30.928 388 242 7 150 524 146 520 8.59e-58 201
MS.gene020693.t1 MTR_4g064150 32.115 383 245 8 149 523 357 732 4.28e-57 203
MS.gene020693.t1 MTR_3g022830 28.401 419 244 6 154 524 26 436 7.40e-57 196
MS.gene020693.t1 MTR_7g057230 34.211 380 228 10 151 523 292 656 9.80e-56 198
MS.gene020693.t1 MTR_4g102790 32.658 395 230 10 147 523 285 661 2.83e-55 197
MS.gene020693.t1 MTR_4g064200 30.504 377 253 5 149 523 280 649 4.68e-55 196
MS.gene020693.t1 MTR_2g097390 30.890 382 245 9 149 523 271 640 7.76e-55 195
MS.gene020693.t1 MTR_2g097310 30.159 378 253 5 149 523 268 637 1.31e-54 194
MS.gene020693.t1 MTR_4g064120 31.217 378 251 7 149 521 250 623 1.98e-54 194
MS.gene020693.t1 MTR_4g064180 31.398 379 249 7 149 521 250 623 2.43e-54 194
MS.gene020693.t1 MTR_2g097350 31.070 383 243 11 149 523 270 639 2.07e-53 191
MS.gene020693.t1 MTR_6g047750 33.760 391 221 11 151 524 293 662 2.36e-53 191
MS.gene020693.t1 MTR_5g015490 30.526 380 253 6 153 524 114 490 1.99e-51 183
MS.gene020693.t1 MTR_2g097467 29.787 376 256 4 149 523 285 653 8.21e-51 184
MS.gene020693.t1 MTR_2g097473 30.769 377 251 6 149 523 285 653 7.37e-50 182
MS.gene020693.t1 MTR_4g077760 34.358 358 214 9 173 524 213 555 2.94e-49 178
MS.gene020693.t1 MTR_2g097463 29.708 377 255 4 149 523 286 654 1.81e-48 178
MS.gene020693.t1 MTR_1g096030 29.657 408 229 16 150 524 77 459 8.16e-46 167
MS.gene020693.t1 MTR_4g076020 32.432 370 220 9 157 524 88 429 8.31e-46 166
MS.gene020693.t1 MTR_2g089100 25.114 438 296 7 112 523 11 442 1.09e-42 158
MS.gene020693.t1 MTR_2g097380 25.180 417 270 8 110 523 183 560 4.40e-42 159
MS.gene020693.t1 MTR_1g069725 30.170 411 259 13 118 523 75 462 1.59e-41 155
MS.gene020693.t1 MTR_3g072710 28.718 390 255 9 150 523 117 499 3.52e-39 149
MS.gene020693.t1 MTR_2g099110 29.293 396 240 10 152 524 73 451 1.09e-38 147
MS.gene020693.t1 MTR_2g034250 27.366 391 256 9 150 524 207 585 2.82e-37 145
MS.gene020693.t1 MTR_5g058860 29.337 392 248 11 150 523 116 496 2.52e-34 135
MS.gene020693.t1 MTR_5g015950 24.201 438 266 9 139 523 21 445 1.23e-33 133
MS.gene020693.t1 MTR_3g053270 24.201 438 266 9 139 523 21 445 1.23e-33 133
MS.gene020693.t1 MTR_4g095500 24.940 417 265 8 150 523 56 467 1.68e-33 133
MS.gene020693.t1 MTR_2g034280 25.065 387 267 11 150 524 200 575 2.31e-31 128
MS.gene020693.t1 MTR_4g026485 27.056 377 247 10 154 524 270 624 2.68e-31 128
MS.gene020693.t1 MTR_2g034260 25.570 395 257 11 150 524 207 584 6.38e-31 127
MS.gene020693.t1 MTR_5g009080 28.972 214 144 3 150 363 53 258 3.52e-29 120
MS.gene020693.t1 MTR_5g009080 36.879 141 88 1 385 524 338 478 1.18e-23 104
MS.gene020693.t1 MTR_7g109580 26.098 387 258 11 149 524 185 554 7.34e-29 120
MS.gene020693.t1 MTR_4g076140 31.111 225 146 3 138 361 32 248 7.68e-29 119
MS.gene020693.t1 MTR_4g076140 38.298 141 86 1 385 524 329 469 8.65e-26 110
MS.gene020693.t1 MTR_0092s0100 25.201 373 260 7 154 524 376 731 2.64e-28 119
MS.gene020693.t1 MTR_0092s0100 25.201 373 260 7 154 524 373 728 3.12e-28 119
MS.gene020693.t1 MTR_8g093070 26.341 410 267 14 122 523 113 495 9.45e-26 110
MS.gene020693.t1 MTR_8g020840 24.069 403 254 14 151 524 169 548 1.71e-20 95.1
MS.gene020693.t1 MTR_1g086970 24.020 408 273 14 133 524 92 478 5.30e-20 93.2
MS.gene020693.t1 MTR_3g022580 32.727 110 74 0 415 524 74 183 1.65e-15 75.5
MS.gene020693.t1 MTR_8g077940 23.773 387 261 13 149 524 178 541 2.43e-15 79.3
MS.gene020693.t1 MTR_3g022005 36.559 93 59 0 432 524 33 125 1.32e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020693.t1 AT5G48150 55.922 515 198 6 11 524 4 490 0.0 565
MS.gene020693.t1 AT5G48150 55.922 515 198 6 11 524 4 490 0.0 565
MS.gene020693.t1 AT5G48150 55.922 515 198 6 11 524 4 490 0.0 565
MS.gene020693.t1 AT5G48150 55.922 515 198 6 11 524 4 490 0.0 565
MS.gene020693.t1 AT1G50600 56.309 531 204 8 5 524 88 601 0.0 565
MS.gene020693.t1 AT1G50600 56.497 531 203 9 5 524 84 597 0.0 565
MS.gene020693.t1 AT1G50600 56.309 531 204 8 5 524 13 526 0.0 564
MS.gene020693.t1 AT2G04890 61.979 384 135 3 141 524 41 413 5.07e-177 504
MS.gene020693.t1 AT4G17230 47.868 516 234 7 29 524 25 525 4.09e-156 456
MS.gene020693.t1 AT4G17230 47.868 516 234 7 29 524 25 525 4.09e-156 456
MS.gene020693.t1 AT1G21450 46.652 448 221 5 91 524 150 593 6.29e-138 411
MS.gene020693.t1 AT1G66350 35.884 379 215 11 150 524 152 506 6.37e-69 230
MS.gene020693.t1 AT3G03450 34.817 382 226 9 150 524 180 545 3.89e-65 221
MS.gene020693.t1 AT1G14920 35.263 380 222 11 150 524 169 529 4.79e-65 220
MS.gene020693.t1 AT1G07530 33.598 378 245 4 148 523 391 764 1.02e-64 224
MS.gene020693.t1 AT2G01570 36.220 381 217 12 150 524 221 581 2.01e-64 220
MS.gene020693.t1 AT5G17490 33.943 383 222 9 150 524 157 516 1.26e-63 216
MS.gene020693.t1 AT2G29060 34.031 382 238 6 149 523 280 654 1.24e-60 211
MS.gene020693.t1 AT2G29060 34.031 382 238 6 149 523 317 691 2.19e-60 211
MS.gene020693.t1 AT5G52510 33.842 393 223 9 151 524 266 640 1.11e-59 208
MS.gene020693.t1 AT3G54220 36.043 369 218 8 157 523 297 649 1.12e-58 206
MS.gene020693.t1 AT5G41920 35.156 384 217 13 150 524 40 400 1.25e-55 192
MS.gene020693.t1 AT3G46600 29.921 381 251 4 150 524 1 371 2.04e-54 188
MS.gene020693.t1 AT1G07520 28.442 443 292 10 100 523 92 528 5.27e-54 191
MS.gene020693.t1 AT1G07520 28.442 443 292 10 100 523 92 528 5.27e-54 191
MS.gene020693.t1 AT3G46600 30.105 382 251 4 149 524 176 547 8.36e-54 191
MS.gene020693.t1 AT3G46600 30.105 382 251 4 149 524 208 579 8.59e-54 191
MS.gene020693.t1 AT1G07520 28.442 443 292 10 100 523 257 693 2.10e-53 192
MS.gene020693.t1 AT5G59450 29.211 380 261 5 149 524 223 598 2.14e-53 191
MS.gene020693.t1 AT1G07520 28.442 443 292 10 100 523 256 692 2.18e-53 192
MS.gene020693.t1 AT5G66770 33.333 381 235 8 150 524 217 584 9.61e-53 188
MS.gene020693.t1 AT2G29065 30.366 382 257 5 149 523 248 627 3.54e-52 187
MS.gene020693.t1 AT2G37650 29.443 377 259 5 149 524 331 701 9.44e-51 185
MS.gene020693.t1 AT2G37650 29.443 377 259 5 149 524 343 713 9.81e-51 185
MS.gene020693.t1 AT3G50650 32.041 387 236 8 149 524 172 542 1.76e-50 181
MS.gene020693.t1 AT1G55580 30.361 415 239 9 150 524 41 445 6.00e-50 178
MS.gene020693.t1 AT1G63100 31.026 390 245 6 149 523 248 628 2.57e-49 180
MS.gene020693.t1 AT1G63100 31.026 390 245 6 149 523 273 653 4.13e-49 179
MS.gene020693.t1 AT4G37650 28.934 394 248 11 153 524 146 529 4.13e-47 172
MS.gene020693.t1 AT4G08250 28.990 307 201 6 225 523 179 476 1.87e-34 135
MS.gene020693.t1 AT3G49950 23.896 385 278 6 150 523 27 407 3.75e-33 130
MS.gene020693.t1 AT1G50420 31.132 212 140 1 150 361 54 259 1.97e-30 124
MS.gene020693.t1 AT1G50420 38.028 142 85 2 385 524 339 479 1.00e-25 110
MS.gene020693.t1 AT3G60630 27.119 354 221 10 186 524 291 622 5.72e-24 106
MS.gene020693.t1 AT2G45160 25.594 379 227 14 169 524 293 639 2.71e-23 104
MS.gene020693.t1 AT4G36710 26.478 389 249 14 149 524 121 485 1.19e-21 98.6
MS.gene020693.t1 AT4G00150 24.557 395 233 15 150 524 205 554 2.40e-20 94.7
MS.gene020693.t1 AT3G13840 24.041 391 254 12 151 524 146 510 2.51e-20 94.7
MS.gene020693.t1 AT5G67411 30.348 201 126 5 272 461 1 198 4.98e-15 74.3

Find 96 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAAATGGTTTCGGTTTC+AGG 0.082618 5.4:-74300636 MS.gene020693:CDS
ATTTGTCCTTACCTCAAATT+TGG 0.139278 5.4:-74300459 MS.gene020693:CDS
TCTTTACTAGTAGCAGTTAT+AGG 0.224168 5.4:+74300513 None:intergenic
GCATTTGAGTTTCATGCTAT+AGG 0.322420 5.4:-74300189 MS.gene020693:CDS
CATTTGAGTTTCATGCTATA+GGG 0.329203 5.4:-74300188 MS.gene020693:CDS
CAATTAATATAAGAGCTTAA+TGG 0.338228 5.4:+74299730 None:intergenic
AACTTCACTTTCATCTTTCA+AGG 0.343048 5.4:+74300404 None:intergenic
AGCAATATCAGAAAATGATA+TGG 0.350309 5.4:-74300688 MS.gene020693:CDS
ATCTGATCCACTCTTGTTAG+AGG 0.352080 5.4:-74300784 MS.gene020693:CDS
TATAGGCTCTTTGCATTTCA+AGG 0.357284 5.4:+74300530 None:intergenic
ATATAAGAGCTTAATGGATA+TGG 0.358531 5.4:+74299736 None:intergenic
AATGTCAGAGTTGTCGAAAA+TGG 0.368522 5.4:-74300649 MS.gene020693:CDS
CTGATCTTCGGCGGTCCTCC+AGG 0.371989 5.4:+74300312 None:intergenic
AAAGATGGTGCTCTTTATCT+TGG 0.376459 5.4:-74299655 MS.gene020693:CDS
ACATGTATGCTCCTAACCTT+TGG 0.380505 5.4:+74300604 None:intergenic
GGAGGAGGACTTGTTATTGT+TGG 0.385168 5.4:-74300249 MS.gene020693:CDS
CAAGCACTTGCTGGAAAACC+TGG 0.390705 5.4:-74300330 MS.gene020693:CDS
CTGACATGTATCCAAATTTG+AGG 0.406987 5.4:+74300448 None:intergenic
GTTGCAAGAATAGCTTCTTC+AGG 0.410550 5.4:-74300570 MS.gene020693:CDS
GACTTGTTATTGTTGGAGAA+AGG 0.425126 5.4:-74300242 MS.gene020693:CDS
TATGCTCCTAACCTTTGGAT+TGG 0.428646 5.4:+74300609 None:intergenic
TCGACGAAACGTGCAAAGAA+TGG 0.431715 5.4:+74299958 None:intergenic
AGTCTAATCCAAGCACTTGC+TGG 0.434105 5.4:-74300339 MS.gene020693:CDS
TGTTCTAAAGCTTGAAATGA+AGG 0.434140 5.4:+74301041 None:intergenic
GGCAAAATGTTTGTCTCCTA+AGG 0.436222 5.4:-74300022 MS.gene020693:CDS
TCTTGTGCCACAAGTCATCT+TGG 0.436674 5.4:+74300892 None:intergenic
GACTATTGTTAGAAGATTCA+AGG 0.438602 5.4:+74301015 None:intergenic
ATCCTTTCTCTGTGCTCCCT+TGG 0.438790 5.4:+74299886 None:intergenic
ATGGTGCTCTTTATCTTGGT+TGG 0.450648 5.4:-74299651 MS.gene020693:CDS
AGATCATGTTTCACAATGGC+TGG 0.452840 5.4:-74299766 MS.gene020693:CDS
CTTGTAGAGTATAATGTCCT+TGG 0.456322 5.4:+74299680 None:intergenic
AAACCGGTTATTCTGATCTT+CGG 0.458599 5.4:+74300300 None:intergenic
CTCTTATTACCTCTAGTGCT+TGG 0.460840 5.4:-74299618 MS.gene020693:CDS
GGAAATCCAATCCAAAGGTT+AGG 0.465445 5.4:-74300615 MS.gene020693:CDS
AGAGTTGTCGAAAATGGTTT+CGG 0.470075 5.4:-74300643 MS.gene020693:CDS
TTATTACCTCTAGTGCTTGG+AGG 0.473858 5.4:-74299615 MS.gene020693:CDS
CTTCACCACGACGAAGTTCA+AGG 0.477100 5.4:+74300136 None:intergenic
TCGCGATCGATTAGTGAGAT+TGG 0.480871 5.4:-74300043 MS.gene020693:CDS
CCGCCGAAGATCAGAATAAC+CGG 0.481757 5.4:-74300303 MS.gene020693:CDS
TGCCAAGGGAGCACAGAGAA+AGG 0.488020 5.4:-74299888 MS.gene020693:CDS
TATGAGTCTAGATCTTGTAT+AGG 0.488577 5.4:+74301131 None:intergenic
TCAGCTTATGCTAGGGGAGG+AGG 0.490751 5.4:-74300264 MS.gene020693:CDS
CAATTGATGTTGCTTTGCCA+AGG 0.496515 5.4:-74299903 MS.gene020693:CDS
TCAACAAGAGTCACTACCTT+AGG 0.498490 5.4:+74300006 None:intergenic
GAAATGAAGGGTAGGTTGAA+TGG 0.500307 5.4:+74301054 None:intergenic
TTTGGATACATGTCAGCAAA+TGG 0.500743 5.4:-74300441 MS.gene020693:CDS
AATCTCTTTCAAATCCCCTC+TGG 0.501280 5.4:+74300728 None:intergenic
TGAAGTTGAGTCATCAAAAC+CGG 0.501919 5.4:+74300284 None:intergenic
TAATGTGGAACAGCATTGCT+TGG 0.522983 5.4:-74299863 MS.gene020693:CDS
TGAATCTTCTAACAATAGTC+CGG 0.523182 5.4:-74301012 MS.gene020693:CDS
AACTACTCATCTTCTGATAA+CGG 0.524904 5.4:-74301080 MS.gene020693:CDS
ACTCAACTTCAGCTTATGCT+AGG 0.530700 5.4:-74300272 MS.gene020693:CDS
CTCAACTTCAGCTTATGCTA+GGG 0.532037 5.4:-74300271 MS.gene020693:CDS
GAGCTTGAAAATGCTATGCT+AGG 0.532196 5.4:-74300864 MS.gene020693:CDS
GCACATCTTCATCCGGTACA+TGG 0.535079 5.4:+74300082 None:intergenic
CCACCATGCACATCTTCATC+CGG 0.542699 5.4:+74300075 None:intergenic
CAAGCACTAGAGGTAATAAG+AGG 0.548387 5.4:+74299619 None:intergenic
CATGATGCTGCACCATGTAC+CGG 0.549165 5.4:-74300094 MS.gene020693:CDS
ATGTATCCAAATTTGAGGTA+AGG 0.552106 5.4:+74300453 None:intergenic
CGGTACATGGTGCAGCATCA+TGG 0.552726 5.4:+74300095 None:intergenic
TTTGACTGTAGCTTCGAGAC+CGG 0.552976 5.4:+74300993 None:intergenic
ATTTGAGTTTCATGCTATAG+GGG 0.555615 5.4:-74300187 MS.gene020693:CDS
ACTATTGTTAGAAGATTCAA+GGG 0.562160 5.4:+74301016 None:intergenic
GTCACGAGGTTCTGAAGAAG+TGG 0.562877 5.4:-74299789 MS.gene020693:CDS
TCTTCAAGTCTCACCTCAGA+AGG 0.563852 5.4:+74300159 None:intergenic
ATGATATGGAAACAGCTGAA+TGG 0.565722 5.4:-74300674 MS.gene020693:CDS
GTTCTAAAGCTTGAAATGAA+GGG 0.567885 5.4:+74301042 None:intergenic
AATTGATGTTGCTTTGCCAA+GGG 0.571262 5.4:-74299902 MS.gene020693:CDS
TGCAAAGAATGGAAGCTCGT+TGG 0.585649 5.4:+74299969 None:intergenic
TAAAGCTTGAAATGAAGGGT+AGG 0.588089 5.4:+74301046 None:intergenic
GTCAATTTAGTAGCGTGTGA+AGG 0.591391 5.4:-74299829 MS.gene020693:CDS
AGATTAATCAGGGAATTCAG+TGG 0.595212 5.4:-74300365 MS.gene020693:CDS
TTCTCTGCCTCTAACAAGAG+TGG 0.596842 5.4:+74300777 None:intergenic
TGATTGAGATGATATCCAGA+GGG 0.598119 5.4:-74300743 MS.gene020693:CDS
GCATTGCTTGGCTCGCGAAG+TGG 0.604747 5.4:-74299851 MS.gene020693:CDS
TATACTCTACAAGAGAAAGA+TGG 0.606593 5.4:-74299670 MS.gene020693:CDS
TCGTCGTGGTGAAGCTATTG+CGG 0.619071 5.4:-74300127 MS.gene020693:CDS
TTTCAGGAAATCCAATCCAA+AGG 0.621360 5.4:-74300620 MS.gene020693:CDS
GTATCACCTCCAAGCACTAG+AGG 0.626501 5.4:+74299609 None:intergenic
CACATAACCAAGATGACTTG+TGG 0.627441 5.4:-74300899 MS.gene020693:CDS
TCTTGTTAGAGGCAGAGAAG+TGG 0.627727 5.4:-74300773 MS.gene020693:CDS
GCACAGAGAAAGGATTAATG+TGG 0.636528 5.4:-74299878 MS.gene020693:CDS
AAGGTTAGGAGCATACATGT+TGG 0.640121 5.4:-74300601 MS.gene020693:CDS
TATAGGGGCTAGTCCTTCTG+AGG 0.643175 5.4:-74300172 MS.gene020693:CDS
CCGGTTATTCTGATCTTCGG+CGG 0.646295 5.4:+74300303 None:intergenic
ACTTCAGCTTATGCTAGGGG+AGG 0.652120 5.4:-74300267 MS.gene020693:CDS
TCAACTTCAGCTTATGCTAG+GGG 0.673617 5.4:-74300270 MS.gene020693:CDS
AGAGAGAGTTGAACGTCACG+AGG 0.678622 5.4:-74299803 MS.gene020693:CDS
ATGATTGAGATGATATCCAG+AGG 0.679838 5.4:-74300744 MS.gene020693:CDS
GAAGACCTTGAACTTCGTCG+TGG 0.689434 5.4:-74300141 MS.gene020693:CDS
AATCTTCTAGAAAATTACCA+AGG 0.696750 5.4:-74299697 MS.gene020693:CDS
GTGGAGATCATGTTTCACAA+TGG 0.702263 5.4:-74299770 MS.gene020693:CDS
GCACTTGCTGGAAAACCTGG+AGG 0.713946 5.4:-74300327 MS.gene020693:CDS
GTACCGGATGAAGATGTGCA+TGG 0.723566 5.4:-74300078 MS.gene020693:CDS
GATTGAGATGATATCCAGAG+GGG 0.733440 5.4:-74300742 MS.gene020693:CDS
CCGGATGAAGATGTGCATGG+TGG 0.766036 5.4:-74300075 MS.gene020693:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTAATATAAGAGCTTAA+TGG + chr5.4:74301049-74301068 None:intergenic 20.0%
!!! AATTGATTTTCAGATTAATC+AGG - chr5.4:74300400-74300419 MS.gene020693:CDS 20.0%
!!! ATTGATTTTCAGATTAATCA+GGG - chr5.4:74300401-74300420 MS.gene020693:CDS 20.0%
! ACTATTGTTAGAAGATTCAA+GGG + chr5.4:74299763-74299782 None:intergenic 25.0%
! AGCAATATCAGAAAATGATA+TGG - chr5.4:74300088-74300107 MS.gene020693:CDS 25.0%
!! AATCTTCTAGAAAATTACCA+AGG - chr5.4:74301079-74301098 MS.gene020693:CDS 25.0%
!! ATATAAGAGCTTAATGGATA+TGG + chr5.4:74301043-74301062 None:intergenic 25.0%
AACTACTCATCTTCTGATAA+CGG - chr5.4:74299696-74299715 MS.gene020693:CDS 30.0%
AACTTCACTTTCATCTTTCA+AGG + chr5.4:74300375-74300394 None:intergenic 30.0%
ATTTGTCCTTACCTCAAATT+TGG - chr5.4:74300317-74300336 MS.gene020693:CDS 30.0%
GACTATTGTTAGAAGATTCA+AGG + chr5.4:74299764-74299783 None:intergenic 30.0%
TATACTCTACAAGAGAAAGA+TGG - chr5.4:74301106-74301125 MS.gene020693:CDS 30.0%
TATGAGTCTAGATCTTGTAT+AGG + chr5.4:74299648-74299667 None:intergenic 30.0%
TCTTTACTAGTAGCAGTTAT+AGG + chr5.4:74300266-74300285 None:intergenic 30.0%
TGAATCTTCTAACAATAGTC+CGG - chr5.4:74299764-74299783 MS.gene020693:CDS 30.0%
! ATGTATCCAAATTTGAGGTA+AGG + chr5.4:74300326-74300345 None:intergenic 30.0%
! ATTTGAGTTTCATGCTATAG+GGG - chr5.4:74300589-74300608 MS.gene020693:CDS 30.0%
! CATTTGAGTTTCATGCTATA+GGG - chr5.4:74300588-74300607 MS.gene020693:CDS 30.0%
!! GTTCTAAAGCTTGAAATGAA+GGG + chr5.4:74299737-74299756 None:intergenic 30.0%
!! TGTTCTAAAGCTTGAAATGA+AGG + chr5.4:74299738-74299757 None:intergenic 30.0%
!! TTTCGAGATTCTCATTTTTC+AGG + chr5.4:74299677-74299696 None:intergenic 30.0%
AAACCGGTTATTCTGATCTT+CGG + chr5.4:74300479-74300498 None:intergenic 35.0%
AAAGATGGTGCTCTTTATCT+TGG - chr5.4:74301121-74301140 MS.gene020693:CDS 35.0%
AATGTCAGAGTTGTCGAAAA+TGG - chr5.4:74300127-74300146 MS.gene020693:CDS 35.0%
AGAGTTGTCGAAAATGGTTT+CGG - chr5.4:74300133-74300152 MS.gene020693:CDS 35.0%
AGATTAATCAGGGAATTCAG+TGG - chr5.4:74300411-74300430 MS.gene020693:CDS 35.0%
ATGATATGGAAACAGCTGAA+TGG - chr5.4:74300102-74300121 MS.gene020693:CDS 35.0%
ATGATTGAGATGATATCCAG+AGG - chr5.4:74300032-74300051 MS.gene020693:CDS 35.0%
CTGACATGTATCCAAATTTG+AGG + chr5.4:74300331-74300350 None:intergenic 35.0%
CTTGTAGAGTATAATGTCCT+TGG + chr5.4:74301099-74301118 None:intergenic 35.0%
TAAAGCTTGAAATGAAGGGT+AGG + chr5.4:74299733-74299752 None:intergenic 35.0%
TATAGGCTCTTTGCATTTCA+AGG + chr5.4:74300249-74300268 None:intergenic 35.0%
TGAAGTTGAGTCATCAAAAC+CGG + chr5.4:74300495-74300514 None:intergenic 35.0%
TGATTGAGATGATATCCAGA+GGG - chr5.4:74300033-74300052 MS.gene020693:CDS 35.0%
TTTCAGGAAATCCAATCCAA+AGG - chr5.4:74300156-74300175 MS.gene020693:CDS 35.0%
TTTGGATACATGTCAGCAAA+TGG - chr5.4:74300335-74300354 MS.gene020693:CDS 35.0%
! GCATTTGAGTTTCATGCTAT+AGG - chr5.4:74300587-74300606 MS.gene020693:CDS 35.0%
!! AATTGATGTTGCTTTGCCAA+GGG - chr5.4:74300874-74300893 MS.gene020693:CDS 35.0%
!! GACTTGTTATTGTTGGAGAA+AGG - chr5.4:74300534-74300553 MS.gene020693:CDS 35.0%
AATCTCTTTCAAATCCCCTC+TGG + chr5.4:74300051-74300070 None:intergenic 40.0%
ACATGTATGCTCCTAACCTT+TGG + chr5.4:74300175-74300194 None:intergenic 40.0%
ACTCAACTTCAGCTTATGCT+AGG - chr5.4:74300504-74300523 MS.gene020693:CDS 40.0%
AGATCATGTTTCACAATGGC+TGG - chr5.4:74301010-74301029 MS.gene020693:CDS 40.0%
ATCTGATCCACTCTTGTTAG+AGG - chr5.4:74299992-74300011 MS.gene020693:CDS 40.0%
ATGGTGCTCTTTATCTTGGT+TGG - chr5.4:74301125-74301144 MS.gene020693:CDS 40.0%
CAAGCACTAGAGGTAATAAG+AGG + chr5.4:74301160-74301179 None:intergenic 40.0%
CACATAACCAAGATGACTTG+TGG - chr5.4:74299877-74299896 MS.gene020693:CDS 40.0%
CTCAACTTCAGCTTATGCTA+GGG - chr5.4:74300505-74300524 MS.gene020693:CDS 40.0%
CTCTTATTACCTCTAGTGCT+TGG - chr5.4:74301158-74301177 MS.gene020693:CDS 40.0%
GAGCTTGAAAATGCTATGCT+AGG - chr5.4:74299912-74299931 MS.gene020693:CDS 40.0%
GATTGAGATGATATCCAGAG+GGG - chr5.4:74300034-74300053 MS.gene020693:CDS 40.0%
GCACAGAGAAAGGATTAATG+TGG - chr5.4:74300898-74300917 MS.gene020693:CDS 40.0%
GGAAATCCAATCCAAAGGTT+AGG - chr5.4:74300161-74300180 MS.gene020693:CDS 40.0%
GGCAAAATGTTTGTCTCCTA+AGG - chr5.4:74300754-74300773 MS.gene020693:CDS 40.0%
GTCAATTTAGTAGCGTGTGA+AGG - chr5.4:74300947-74300966 MS.gene020693:CDS 40.0%
GTGGAGATCATGTTTCACAA+TGG - chr5.4:74301006-74301025 MS.gene020693:CDS 40.0%
GTTGCAAGAATAGCTTCTTC+AGG - chr5.4:74300206-74300225 MS.gene020693:CDS 40.0%
TAATGTGGAACAGCATTGCT+TGG - chr5.4:74300913-74300932 MS.gene020693:CDS 40.0%
TATGCTCCTAACCTTTGGAT+TGG + chr5.4:74300170-74300189 None:intergenic 40.0%
TCAACAAGAGTCACTACCTT+AGG + chr5.4:74300773-74300792 None:intergenic 40.0%
TCAACTTCAGCTTATGCTAG+GGG - chr5.4:74300506-74300525 MS.gene020693:CDS 40.0%
TCGAAAATGGTTTCGGTTTC+AGG - chr5.4:74300140-74300159 MS.gene020693:CDS 40.0%
TTATTACCTCTAGTGCTTGG+AGG - chr5.4:74301161-74301180 MS.gene020693:CDS 40.0%
! AAGGTTAGGAGCATACATGT+TGG - chr5.4:74300175-74300194 MS.gene020693:CDS 40.0%
! GAAATGAAGGGTAGGTTGAA+TGG + chr5.4:74299725-74299744 None:intergenic 40.0%
!! CAATTGATGTTGCTTTGCCA+AGG - chr5.4:74300873-74300892 MS.gene020693:CDS 40.0%
AGTCTAATCCAAGCACTTGC+TGG - chr5.4:74300437-74300456 MS.gene020693:CDS 45.0%
TCGACGAAACGTGCAAAGAA+TGG + chr5.4:74300821-74300840 None:intergenic 45.0%
TCGCGATCGATTAGTGAGAT+TGG - chr5.4:74300733-74300752 MS.gene020693:CDS 45.0%
TCTTCAAGTCTCACCTCAGA+AGG + chr5.4:74300620-74300639 None:intergenic 45.0%
TCTTGTGCCACAAGTCATCT+TGG + chr5.4:74299887-74299906 None:intergenic 45.0%
TCTTGTTAGAGGCAGAGAAG+TGG - chr5.4:74300003-74300022 MS.gene020693:CDS 45.0%
TGCAAAGAATGGAAGCTCGT+TGG + chr5.4:74300810-74300829 None:intergenic 45.0%
TTCTCTGCCTCTAACAAGAG+TGG + chr5.4:74300002-74300021 None:intergenic 45.0%
TTTGACTGTAGCTTCGAGAC+CGG + chr5.4:74299786-74299805 None:intergenic 45.0%
!! GGAGGAGGACTTGTTATTGT+TGG - chr5.4:74300527-74300546 MS.gene020693:CDS 45.0%
ACTTCAGCTTATGCTAGGGG+AGG - chr5.4:74300509-74300528 MS.gene020693:CDS 50.0%
AGAGAGAGTTGAACGTCACG+AGG - chr5.4:74300973-74300992 MS.gene020693:CDS 50.0%
ATCCTTTCTCTGTGCTCCCT+TGG + chr5.4:74300893-74300912 None:intergenic 50.0%
CATGATGCTGCACCATGTAC+CGG - chr5.4:74300682-74300701 MS.gene020693:CDS 50.0%
CCACCATGCACATCTTCATC+CGG + chr5.4:74300704-74300723 None:intergenic 50.0%
CCGCCGAAGATCAGAATAAC+CGG - chr5.4:74300473-74300492 MS.gene020693:CDS 50.0%
CCGGTTATTCTGATCTTCGG+CGG + chr5.4:74300476-74300495 None:intergenic 50.0%
CTTCACCACGACGAAGTTCA+AGG + chr5.4:74300643-74300662 None:intergenic 50.0%
GAAGACCTTGAACTTCGTCG+TGG - chr5.4:74300635-74300654 MS.gene020693:CDS 50.0%
GCACATCTTCATCCGGTACA+TGG + chr5.4:74300697-74300716 None:intergenic 50.0%
GTACCGGATGAAGATGTGCA+TGG - chr5.4:74300698-74300717 MS.gene020693:CDS 50.0%
TCGTCGTGGTGAAGCTATTG+CGG - chr5.4:74300649-74300668 MS.gene020693:CDS 50.0%
! CAAGCACTTGCTGGAAAACC+TGG - chr5.4:74300446-74300465 MS.gene020693:CDS 50.0%
! CAGGTTTTCCAGCAAGTGCT+TGG + chr5.4:74300448-74300467 None:intergenic 50.0%
!! GTCACGAGGTTCTGAAGAAG+TGG - chr5.4:74300987-74301006 MS.gene020693:CDS 50.0%
!! TATAGGGGCTAGTCCTTCTG+AGG - chr5.4:74300604-74300623 MS.gene020693:CDS 50.0%
CCGGATGAAGATGTGCATGG+TGG - chr5.4:74300701-74300720 MS.gene020693:CDS 55.0%
CGGTACATGGTGCAGCATCA+TGG + chr5.4:74300684-74300703 None:intergenic 55.0%
TCAGCTTATGCTAGGGGAGG+AGG - chr5.4:74300512-74300531 MS.gene020693:CDS 55.0%
! GCACTTGCTGGAAAACCTGG+AGG - chr5.4:74300449-74300468 MS.gene020693:CDS 55.0%
! TGCCAAGGGAGCACAGAGAA+AGG - chr5.4:74300888-74300907 MS.gene020693:CDS 55.0%
! GCATTGCTTGGCTCGCGAAG+TGG - chr5.4:74300925-74300944 MS.gene020693:CDS 60.0%
CTGATCTTCGGCGGTCCTCC+AGG + chr5.4:74300467-74300486 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 74299612 74301186 74299612 ID=MS.gene020693
chr5.4 mRNA 74299612 74301186 74299612 ID=MS.gene020693.t1;Parent=MS.gene020693
chr5.4 exon 74299612 74301186 74299612 ID=MS.gene020693.t1.exon1;Parent=MS.gene020693.t1
chr5.4 CDS 74299612 74301186 74299612 ID=cds.MS.gene020693.t1;Parent=MS.gene020693.t1
Gene Sequence

>MS.gene020693

ATGTCATATGATTCTAGCATGTTCAGCATTGAGCCTATACAAGATCTAGACTCATATTGCTTCCTGAAAAATGAGAATCTCGAAAACTACTCATCTTCTGATAACGGTAGCCATTCAACCTACCCTTCATTTCAAGCTTTAGAACAAACCCTTGAATCTTCTAACAATAGTCCGGTCTCGAAGCTACAGTCAAAATCTTACACGTTCACGTCACGAAACTCTCTTGAAATTATCAATGATTCTTTAGAGAATGAATCTTGCTTGACACATAACCAAGATGACTTGTGGCACAAGATAAGAGAGCTTGAAAATGCTATGCTAGGACATGATGCTGCAGATATGCTAGACATTTATAATGATGCTGTAATAATTCAACAAGAATCTGATCCACTCTTGTTAGAGGCAGAGAAGTGGAACAAAATGATTGAGATGATATCCAGAGGGGATTTGAAAGAGATTCTTTTTACATGTGCAAAAGCAATATCAGAAAATGATATGGAAACAGCTGAATGGTTAATGTCAGAGTTGTCGAAAATGGTTTCGGTTTCAGGAAATCCAATCCAAAGGTTAGGAGCATACATGTTGGAAGCTCTTGTTGCAAGAATAGCTTCTTCAGGAAGCATAATATACAAATCCTTGAAATGCAAAGAGCCTATAACTGCTACTAGTAAAGAACTACTCTCACACATGCATGTGCTTTATGAAATTTGTCCTTACCTCAAATTTGGATACATGTCAGCAAATGGTGTAATTGCTGAAGCCTTGAAAGATGAAAGTGAAGTTCATATAATTGATTTTCAGATTAATCAGGGAATTCAGTGGATGAGTCTAATCCAAGCACTTGCTGGAAAACCTGGAGGACCGCCGAAGATCAGAATAACCGGTTTTGATGACTCAACTTCAGCTTATGCTAGGGGAGGAGGACTTGTTATTGTTGGAGAAAGGTTGTCAAAACTTGCACAGTCATATAATGTAGCATTTGAGTTTCATGCTATAGGGGCTAGTCCTTCTGAGGTGAGACTTGAAGACCTTGAACTTCGTCGTGGTGAAGCTATTGCGGTGAATTTTGCCATGATGCTGCACCATGTACCGGATGAAGATGTGCATGGTGGTAAGAATCATCGCGATCGATTAGTGAGATTGGCAAAATGTTTGTCTCCTAAGGTAGTGACTCTTGTTGAGCAAGAATCAAATACCAACGAGCTTCCATTCTTTGCACGTTTCGTCGAGACAATGAACTACTACTTCGCAGTTTTTGAATCAATTGATGTTGCTTTGCCAAGGGAGCACAGAGAAAGGATTAATGTGGAACAGCATTGCTTGGCTCGCGAAGTGGTCAATTTAGTAGCGTGTGAAGGCGCAGAGAGAGTTGAACGTCACGAGGTTCTGAAGAAGTGGAGATCATGTTTCACAATGGCTGGATTCACACCATATCCATTAAGCTCTTATATTAATTGTTCAATACAAAATCTTCTAGAAAATTACCAAGGACATTATACTCTACAAGAGAAAGATGGTGCTCTTTATCTTGGTTGGATGAATCAACCTCTTATTACCTCTAGTGCTTGGAGGTGA
Protein sequence

>MS.gene020693.t1

MSYDSSMFSIEPIQDLDSYCFLKNENLENYSSSDNGSHSTYPSFQALEQTLESSNNSPVSKLQSKSYTFTSRNSLEIINDSLENESCLTHNQDDLWHKIRELENAMLGHDAADMLDIYNDAVIIQQESDPLLLEAEKWNKMIEMISRGDLKEILFTCAKAISENDMETAEWLMSELSKMVSVSGNPIQRLGAYMLEALVARIASSGSIIYKSLKCKEPITATSKELLSHMHVLYEICPYLKFGYMSANGVIAEALKDESEVHIIDFQINQGIQWMSLIQALAGKPGGPPKIRITGFDDSTSAYARGGGLVIVGERLSKLAQSYNVAFEFHAIGASPSEVRLEDLELRRGEAIAVNFAMMLHHVPDEDVHGGKNHRDRLVRLAKCLSPKVVTLVEQESNTNELPFFARFVETMNYYFAVFESIDVALPREHRERINVEQHCLAREVVNLVACEGAERVERHEVLKKWRSCFTMAGFTPYPLSSYINCSIQNLLENYQGHYTLQEKDGALYLGWMNQPLITSSAWR