Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020747.t1 | AET00712.2 | 86.9 | 237 | 23 | 1 | 1 | 237 | 1 | 229 | 1.70E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020747.t1 | Q9LG02 | 22.8 | 224 | 153 | 4 | 34 | 237 | 38 | 261 | 6.7e-08 | 59.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020747.t1 | G7K4J6 | 86.9 | 237 | 23 | 1 | 1 | 237 | 1 | 229 | 1.3e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene020747.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020747.t1 | MTR_5g095070 | 86.920 | 237 | 23 | 1 | 1 | 237 | 1 | 229 | 9.61e-152 | 423 |
| MS.gene020747.t1 | MTR_5g080030 | 60.241 | 249 | 85 | 5 | 2 | 237 | 3 | 250 | 1.70e-91 | 275 |
| MS.gene020747.t1 | MTR_5g080030 | 65.574 | 61 | 20 | 1 | 177 | 236 | 264 | 324 | 6.55e-17 | 79.3 |
| MS.gene020747.t1 | MTR_1g084150 | 51.351 | 111 | 33 | 3 | 147 | 236 | 3 | 113 | 2.00e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCTTCTTGAGGAATATT+TGG | 0.163911 | 5.4:-75029940 | None:intergenic |
| AGTAAAACAGGTACAAGTTT+AGG | 0.215844 | 5.4:-75028434 | None:intergenic |
| CTTTCTAAGGTCCAGTTAAA+AGG | 0.247346 | 5.4:+75029129 | MS.gene020747:intron |
| AATTTGACTAGAGTAGTTCT+TGG | 0.346592 | 5.4:-75029222 | None:intergenic |
| GTAAAACAGGTACAAGTTTA+GGG | 0.365515 | 5.4:-75028433 | None:intergenic |
| AGTTGTTTCTGCTCTAAAAC+TGG | 0.365684 | 5.4:+75028888 | MS.gene020747:CDS |
| AACTACTCTAGTCAAATTAC+AGG | 0.369281 | 5.4:+75029227 | MS.gene020747:CDS |
| TGGTAACCACTTTGGTTCCT+TGG | 0.370453 | 5.4:-75029920 | None:intergenic |
| GATGTCGGACATTGATAAAA+AGG | 0.374210 | 5.4:+75030033 | MS.gene020747:CDS |
| AGGTTGGCCATGAAAAGAAA+TGG | 0.384383 | 5.4:+75028860 | MS.gene020747:intron |
| TTGAGAAATTGTACTTCTAC+AGG | 0.406380 | 5.4:+75028974 | MS.gene020747:CDS |
| TAGAAGGTCTCCAAGTCATT+AGG | 0.425705 | 5.4:-75028088 | None:intergenic |
| TTGTGACCTCCAAGTAAAAC+AGG | 0.431064 | 5.4:-75028446 | None:intergenic |
| ACATTGGTGAGTTGTGTGTT+TGG | 0.432104 | 5.4:-75028034 | None:intergenic |
| GGAATATTTGGTAACCACTT+TGG | 0.442677 | 5.4:-75029928 | None:intergenic |
| CTCACCAATGTTGTCGTGTC+CGG | 0.446758 | 5.4:+75028046 | MS.gene020747:CDS |
| GGTTGGCCATGAAAAGAAAT+GGG | 0.467471 | 5.4:+75028861 | MS.gene020747:intron |
| TTGGATATCTTTGCCGCCAT+CGG | 0.472444 | 5.4:-75029203 | None:intergenic |
| TCGAGTGAGTTTGATATAGA+AGG | 0.472599 | 5.4:-75028104 | None:intergenic |
| CCTGCAACCGCCAATGCAAA+AGG | 0.477405 | 5.4:+75029000 | MS.gene020747:CDS |
| TCGACTGAAAGCTGATCATC+AGG | 0.477735 | 5.4:+75029967 | MS.gene020747:CDS |
| ACAAGTTTAGGGATGTTTCT+CGG | 0.498193 | 5.4:-75028422 | None:intergenic |
| AACAAATGGCTATTGATACT+TGG | 0.501313 | 5.4:+75030005 | MS.gene020747:CDS |
| CATACGCGTCCGAAAACAAA+TGG | 0.508342 | 5.4:+75029991 | MS.gene020747:CDS |
| TTCTTACTTAAAGCAGGAGA+TGG | 0.509273 | 5.4:+75029827 | MS.gene020747:intron |
| CTCAATGGAAGACAAGGAAA+TGG | 0.517620 | 5.4:+75027997 | None:intergenic |
| GTCGAGCACATTCCTTCTTG+AGG | 0.518278 | 5.4:-75029949 | None:intergenic |
| TACTTGGAGGTCACAAGAAG+AGG | 0.530713 | 5.4:+75028453 | MS.gene020747:CDS |
| GTATTCTTCTCCTAATGACT+TGG | 0.531995 | 5.4:+75028078 | MS.gene020747:CDS |
| AAGGTCCAGTTAAAAGGAAG+CGG | 0.550807 | 5.4:+75029135 | MS.gene020747:intron |
| CCAATGTTGTCGTGTCCGGC+GGG | 0.557640 | 5.4:+75028050 | MS.gene020747:CDS |
| ACCAATGTTGTCGTGTCCGG+CGG | 0.561143 | 5.4:+75028049 | MS.gene020747:CDS |
| AGGTCCAGTTAAAAGGAAGC+GGG | 0.572045 | 5.4:+75029136 | MS.gene020747:intron |
| GTTTCTGCTCTAAAACTGGA+AGG | 0.575106 | 5.4:+75028892 | MS.gene020747:CDS |
| CCCTAGTTTATCTCAATCAA+CGG | 0.576803 | 5.4:+75029166 | MS.gene020747:CDS |
| TTACCAAATATTCCTCAAGA+AGG | 0.579179 | 5.4:+75029937 | MS.gene020747:CDS |
| CCCGCCGGACACGACAACAT+TGG | 0.584078 | 5.4:-75028050 | None:intergenic |
| CCGTTGATTGAGATAAACTA+GGG | 0.589080 | 5.4:-75029166 | None:intergenic |
| TCCGTTGATTGAGATAAACT+AGG | 0.590229 | 5.4:-75029167 | None:intergenic |
| AGACAACTCAATGGAAGACA+AGG | 0.602364 | 5.4:+75027991 | None:intergenic |
| TTGGAGGTCACAAGAAGAGG+AGG | 0.603112 | 5.4:+75028456 | MS.gene020747:CDS |
| AGAAACAGAGAGGTGCTCCA+AGG | 0.610360 | 5.4:+75029903 | MS.gene020747:CDS |
| TGATACTTGGAAGAAGATGT+CGG | 0.619673 | 5.4:+75030018 | MS.gene020747:CDS |
| GGACGATGAAGATTATCCGA+TGG | 0.637194 | 5.4:+75029187 | MS.gene020747:CDS |
| CAAGGAAATGGTGAAGACGA+CGG | 0.673865 | 5.4:+75028009 | MS.gene020747:CDS |
| CGATGAAGATTATCCGATGG+CGG | 0.681671 | 5.4:+75029190 | MS.gene020747:CDS |
| AGAAGAATACTGTTTCCCGC+CGG | 0.682409 | 5.4:-75028065 | None:intergenic |
| AAAGAAAAGAAGAAACAGAG+AGG | 0.700139 | 5.4:+75029893 | MS.gene020747:CDS |
| GGTGCTCCAAGGAACCAAAG+TGG | 0.716106 | 5.4:+75029914 | MS.gene020747:CDS |
| GTTGGCCATGAAAAGAAATG+GGG | 0.719191 | 5.4:+75028862 | MS.gene020747:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATTACATATAATTATTT+GGG | + | chr5.4:75028339-75028358 | MS.gene020747:intron | 10.0% |
| !! | TGTTATTACATATAATTATT+TGG | + | chr5.4:75028338-75028357 | MS.gene020747:intron | 10.0% |
| !! | TTATAAAAAAAAAATTTCCT+CGG | + | chr5.4:75028788-75028807 | MS.gene020747:intron | 10.0% |
| !!! | GAGGAAATTTTTTTTTTATA+AGG | - | chr5.4:75028789-75028808 | None:intergenic | 15.0% |
| !! | ATTATTTGGATGAGTTTAAA+GGG | + | chr5.4:75029529-75029548 | MS.gene020747:intron | 20.0% |
| !!! | TTCAATTTACAACGTTTTTA+TGG | + | chr5.4:75028816-75028835 | MS.gene020747:intron | 20.0% |
| ! | ATTTACTAAAGTTCCAAAAC+CGG | + | chr5.4:75029443-75029462 | MS.gene020747:intron | 25.0% |
| ! | CGAAAATTGAATTCATTGAT+TGG | + | chr5.4:75029277-75029296 | MS.gene020747:intron | 25.0% |
| ! | GATTATTTGGATGAGTTTAA+AGG | + | chr5.4:75029528-75029547 | MS.gene020747:intron | 25.0% |
| ! | GTAATCTAAATTAGTCAAGA+GGG | + | chr5.4:75028738-75028757 | MS.gene020747:intron | 25.0% |
| ! | TAAAATACGAGCTTGAAATA+TGG | + | chr5.4:75029672-75029691 | MS.gene020747:intron | 25.0% |
| ! | TAATCTAAATTAGTCAAGAG+GGG | + | chr5.4:75028739-75028758 | MS.gene020747:intron | 25.0% |
| ! | TAGTCAAATTACAGGTAATA+AGG | + | chr5.4:75029235-75029254 | MS.gene020747:intron | 25.0% |
| ! | TCTTGACTAATTTAGATTAC+AGG | - | chr5.4:75028738-75028757 | None:intergenic | 25.0% |
| ! | TGCTTAAGATAACCATAAAT+TGG | - | chr5.4:75029039-75029058 | None:intergenic | 25.0% |
| ! | TGTAATCTAAATTAGTCAAG+AGG | + | chr5.4:75028737-75028756 | MS.gene020747:intron | 25.0% |
| ! | TTGAAACTGCAAAATAGAAT+TGG | - | chr5.4:75028399-75028418 | None:intergenic | 25.0% |
| !! | TTGGTAACTCAATGATTATT+TGG | + | chr5.4:75029515-75029534 | MS.gene020747:intron | 25.0% |
| !!! | TATCAATAGCCATTTGTTTT+CGG | - | chr5.4:75030003-75030022 | None:intergenic | 25.0% |
| !!! | TCAAAATCTACTTTGAAATC+TGG | - | chr5.4:75029634-75029653 | None:intergenic | 25.0% |
| !!! | TTCTTTTCTTTGTTACTTGA+GGG | - | chr5.4:75029884-75029903 | None:intergenic | 25.0% |
| AAAGAAAAGAAGAAACAGAG+AGG | + | chr5.4:75029893-75029912 | MS.gene020747:CDS | 30.0% | |
| AACAAATGGCTATTGATACT+TGG | + | chr5.4:75030005-75030024 | MS.gene020747:CDS | 30.0% | |
| AACACAAAAAGTAGCAAAAC+CGG | - | chr5.4:75029465-75029484 | None:intergenic | 30.0% | |
| AACTACTCTAGTCAAATTAC+AGG | + | chr5.4:75029227-75029246 | MS.gene020747:CDS | 30.0% | |
| AATTTGACTAGAGTAGTTCT+TGG | - | chr5.4:75029225-75029244 | None:intergenic | 30.0% | |
| ACCTTAAATACTCCTTTCTA+AGG | + | chr5.4:75029116-75029135 | MS.gene020747:intron | 30.0% | |
| AGTAAAACAGGTACAAGTTT+AGG | - | chr5.4:75028437-75028456 | None:intergenic | 30.0% | |
| ATGTAACCAAACAATATACC+TGG | - | chr5.4:75028488-75028507 | None:intergenic | 30.0% | |
| ATTCCTTCTTGAGGAATATT+TGG | - | chr5.4:75029943-75029962 | None:intergenic | 30.0% | |
| ATTGGATTCTTACTTAAAGC+AGG | + | chr5.4:75029821-75029840 | MS.gene020747:intron | 30.0% | |
| ATTTCGTGCATTCATATTCA+AGG | + | chr5.4:75028219-75028238 | MS.gene020747:intron | 30.0% | |
| GTAAAACAGGTACAAGTTTA+GGG | - | chr5.4:75028436-75028455 | None:intergenic | 30.0% | |
| TTACAGGCACAACATATTTA+TGG | - | chr5.4:75028722-75028741 | None:intergenic | 30.0% | |
| TTACCAAATATTCCTCAAGA+AGG | + | chr5.4:75029937-75029956 | MS.gene020747:CDS | 30.0% | |
| TTGAGAAATTGTACTTCTAC+AGG | + | chr5.4:75028974-75028993 | MS.gene020747:CDS | 30.0% | |
| ! | AAAAGGTTAACCTTTTGCAT+TGG | - | chr5.4:75029013-75029032 | None:intergenic | 30.0% |
| ! | AAACTTGTACCTGTTTTACT+TGG | + | chr5.4:75028437-75028456 | MS.gene020747:CDS | 30.0% |
| ! | ATGCAAAAGGTTAACCTTTT+AGG | + | chr5.4:75029013-75029032 | MS.gene020747:intron | 30.0% |
| ! | TAACCATAAATTGGCCTAAA+AGG | - | chr5.4:75029030-75029049 | None:intergenic | 30.0% |
| ! | TAACCTTTTAGGCCAATTTA+TGG | + | chr5.4:75029024-75029043 | MS.gene020747:intron | 30.0% |
| ! | TGCAAATAGAAGCTACATTT+TGG | - | chr5.4:75028688-75028707 | None:intergenic | 30.0% |
| ! | TTTTCACCAGGTATATTGTT+TGG | + | chr5.4:75028479-75028498 | MS.gene020747:intron | 30.0% |
| !! | ACCTTAGAAAGGAGTATTTA+AGG | - | chr5.4:75029120-75029139 | None:intergenic | 30.0% |
| !! | CTTCTTTTCTTTGTTACTTG+AGG | - | chr5.4:75029885-75029904 | None:intergenic | 30.0% |
| !! | TTTTAGACTTCTCTGGAAAA+CGG | + | chr5.4:75028128-75028147 | MS.gene020747:CDS | 30.0% |
| !! | TTTTTCAACTTGAGCACATA+AGG | - | chr5.4:75028929-75028948 | None:intergenic | 30.0% |
| !!! | TAGAAGCTACATTTTGGTTA+TGG | - | chr5.4:75028682-75028701 | None:intergenic | 30.0% |
| !!! | TGTTTCAGTTTGTTGCATTT+TGG | + | chr5.4:75029068-75029087 | MS.gene020747:intron | 30.0% |
| ACAACCCAAATTCAGTTTAG+AGG | + | chr5.4:75029760-75029779 | MS.gene020747:intron | 35.0% | |
| ACAAGTTTAGGGATGTTTCT+CGG | - | chr5.4:75028425-75028444 | None:intergenic | 35.0% | |
| CACAACTGATCAATTCACTA+TGG | + | chr5.4:75029413-75029432 | MS.gene020747:intron | 35.0% | |
| CCCTAGTTTATCTCAATCAA+CGG | + | chr5.4:75029166-75029185 | MS.gene020747:CDS | 35.0% | |
| GCAAAATAGAATTGGAACAG+AGG | - | chr5.4:75028391-75028410 | None:intergenic | 35.0% | |
| GCAATGTCGAAAACTATATG+TGG | - | chr5.4:75028653-75028672 | None:intergenic | 35.0% | |
| GGTTACATCATATGATGACA+TGG | + | chr5.4:75028500-75028519 | MS.gene020747:intron | 35.0% | |
| GTATTCTTCTCCTAATGACT+TGG | + | chr5.4:75028078-75028097 | MS.gene020747:CDS | 35.0% | |
| TCGAGTGAGTTTGATATAGA+AGG | - | chr5.4:75028107-75028126 | None:intergenic | 35.0% | |
| TGATACTTGGAAGAAGATGT+CGG | + | chr5.4:75030018-75030037 | MS.gene020747:CDS | 35.0% | |
| TGGATGAGTTTAAAGGGATT+TGG | + | chr5.4:75029535-75029554 | MS.gene020747:intron | 35.0% | |
| TTCTCTTGAATGTTTCCTAC+AGG | + | chr5.4:75028840-75028859 | MS.gene020747:intron | 35.0% | |
| TTCTTACTTAAAGCAGGAGA+TGG | + | chr5.4:75029827-75029846 | MS.gene020747:intron | 35.0% | |
| TTGTAAATTGAACATCTCCG+AGG | - | chr5.4:75028808-75028827 | None:intergenic | 35.0% | |
| ! | CCGTTGATTGAGATAAACTA+GGG | - | chr5.4:75029169-75029188 | None:intergenic | 35.0% |
| ! | CTGTGGACATGAGTTTATTT+TGG | + | chr5.4:75029496-75029515 | MS.gene020747:intron | 35.0% |
| ! | GGAATATTTGGTAACCACTT+TGG | - | chr5.4:75029931-75029950 | None:intergenic | 35.0% |
| ! | TCCGTTGATTGAGATAAACT+AGG | - | chr5.4:75029170-75029189 | None:intergenic | 35.0% |
| ! | TGTGTGTTTACTGCTTTGTT+TGG | + | chr5.4:75028186-75028205 | MS.gene020747:intron | 35.0% |
| !! | AAAAGTAGCAAAACCGGTTT+TGG | - | chr5.4:75029459-75029478 | None:intergenic | 35.0% |
| !! | AGTTGTTTCTGCTCTAAAAC+TGG | + | chr5.4:75028888-75028907 | MS.gene020747:CDS | 35.0% |
| !! | CTTTCTAAGGTCCAGTTAAA+AGG | + | chr5.4:75029129-75029148 | MS.gene020747:intron | 35.0% |
| !! | CTTTTAACTGGACCTTAGAA+AGG | - | chr5.4:75029131-75029150 | None:intergenic | 35.0% |
| !! | GCTCAAGTTGAAAAACTCTA+TGG | + | chr5.4:75028934-75028953 | MS.gene020747:CDS | 35.0% |
| AAGGTCCAGTTAAAAGGAAG+CGG | + | chr5.4:75029135-75029154 | MS.gene020747:intron | 40.0% | |
| ACATTGGTGAGTTGTGTGTT+TGG | - | chr5.4:75028037-75028056 | None:intergenic | 40.0% | |
| AGCACATCGTCTTTCAATCA+AGG | - | chr5.4:75029707-75029726 | None:intergenic | 40.0% | |
| AGCTGCCTCTAAACTGAATT+TGG | - | chr5.4:75029768-75029787 | None:intergenic | 40.0% | |
| CTTGAATGTTTCCTACAGGT+TGG | + | chr5.4:75028844-75028863 | MS.gene020747:intron | 40.0% | |
| GCAGTAAACACACATGCAAA+CGG | - | chr5.4:75028180-75028199 | None:intergenic | 40.0% | |
| GCTGCCTCTAAACTGAATTT+GGG | - | chr5.4:75029767-75029786 | None:intergenic | 40.0% | |
| GTGCTTATGCTGCAATACAT+TGG | + | chr5.4:75029803-75029822 | MS.gene020747:intron | 40.0% | |
| GTTGGCCATGAAAAGAAATG+GGG | + | chr5.4:75028862-75028881 | MS.gene020747:CDS | 40.0% | |
| TACGAGCTTGAAATATGGAC+CGG | + | chr5.4:75029677-75029696 | MS.gene020747:intron | 40.0% | |
| TAGAAGGTCTCCAAGTCATT+AGG | - | chr5.4:75028091-75028110 | None:intergenic | 40.0% | |
| TGTGTTTATTAGCTGCACTG+TGG | + | chr5.4:75029479-75029498 | MS.gene020747:intron | 40.0% | |
| TTGTGACCTCCAAGTAAAAC+AGG | - | chr5.4:75028449-75028468 | None:intergenic | 40.0% | |
| ! | ACTCGACTTTTAGACTTCTC+TGG | + | chr5.4:75028121-75028140 | MS.gene020747:CDS | 40.0% |
| ! | AGGTTAACCTTTTGCATTGG+CGG | - | chr5.4:75029010-75029029 | None:intergenic | 40.0% |
| ! | AGGTTGGCCATGAAAAGAAA+TGG | + | chr5.4:75028860-75028879 | MS.gene020747:intron | 40.0% |
| ! | CTTCACCCCATTTCTTTTCA+TGG | - | chr5.4:75028870-75028889 | None:intergenic | 40.0% |
| ! | CTTGTACCTGTTTTACTTGG+AGG | + | chr5.4:75028440-75028459 | MS.gene020747:CDS | 40.0% |
| ! | GGTTGGCCATGAAAAGAAAT+GGG | + | chr5.4:75028861-75028880 | MS.gene020747:intron | 40.0% |
| !! | GTTTCTGCTCTAAAACTGGA+AGG | + | chr5.4:75028892-75028911 | MS.gene020747:CDS | 40.0% |
| AGAAGAATACTGTTTCCCGC+CGG | - | chr5.4:75028068-75028087 | None:intergenic | 45.0% | |
| AGCCTTCAACTTCAACCTAC+AGG | + | chr5.4:75028574-75028593 | MS.gene020747:intron | 45.0% | |
| AGGTCCAGTTAAAAGGAAGC+GGG | + | chr5.4:75029136-75029155 | MS.gene020747:intron | 45.0% | |
| CAAGGAAATGGTGAAGACGA+CGG | + | chr5.4:75028009-75028028 | MS.gene020747:CDS | 45.0% | |
| CATACGCGTCCGAAAACAAA+TGG | + | chr5.4:75029991-75030010 | MS.gene020747:CDS | 45.0% | |
| CCTTCAACTTCAACCTACAG+GGG | + | chr5.4:75028576-75028595 | MS.gene020747:intron | 45.0% | |
| CGATGAAGATTATCCGATGG+CGG | + | chr5.4:75029190-75029209 | MS.gene020747:CDS | 45.0% | |
| GCCTTCAACTTCAACCTACA+GGG | + | chr5.4:75028575-75028594 | MS.gene020747:intron | 45.0% | |
| GGACGATGAAGATTATCCGA+TGG | + | chr5.4:75029187-75029206 | MS.gene020747:CDS | 45.0% | |
| GGTGGTTCAAACAAGATCTG+CGG | + | chr5.4:75029607-75029626 | MS.gene020747:intron | 45.0% | |
| GTCTTTCAATCAAGGTCGTC+CGG | - | chr5.4:75029699-75029718 | None:intergenic | 45.0% | |
| GTGGACACACATTCGAACTT+TGG | - | chr5.4:75028634-75028653 | None:intergenic | 45.0% | |
| TACTTGGAGGTCACAAGAAG+AGG | + | chr5.4:75028453-75028472 | MS.gene020747:CDS | 45.0% | |
| TCGACTGAAAGCTGATCATC+AGG | + | chr5.4:75029967-75029986 | MS.gene020747:CDS | 45.0% | |
| TTGCTAGATTCAACCCCTGT+AGG | - | chr5.4:75028592-75028611 | None:intergenic | 45.0% | |
| TTGGATATCTTTGCCGCCAT+CGG | - | chr5.4:75029206-75029225 | None:intergenic | 45.0% | |
| ! | AAGAAGAGGAGGTTTTCACC+AGG | + | chr5.4:75028467-75028486 | MS.gene020747:CDS | 45.0% |
| ! | TCTTTTCATGGCCAACCTGT+AGG | - | chr5.4:75028858-75028877 | None:intergenic | 45.0% |
| ! | TGGTAACCACTTTGGTTCCT+TGG | - | chr5.4:75029923-75029942 | None:intergenic | 45.0% |
| CTCACCAATGTTGTCGTGTC+CGG | + | chr5.4:75028046-75028065 | MS.gene020747:CDS | 50.0% | |
| GTCGAGCACATTCCTTCTTG+AGG | - | chr5.4:75029952-75029971 | None:intergenic | 50.0% | |
| TCGCACGCTTTCAACCACAT+CGG | + | chr5.4:75029583-75029602 | MS.gene020747:intron | 50.0% | |
| TGTTTGAACCACCACCGATG+TGG | - | chr5.4:75029600-75029619 | None:intergenic | 50.0% | |
| TTGGAGGTCACAAGAAGAGG+AGG | + | chr5.4:75028456-75028475 | MS.gene020747:CDS | 50.0% | |
| ! | CCCCTGTAGGTTGAAGTTGA+AGG | - | chr5.4:75028579-75028598 | None:intergenic | 50.0% |
| ! | GAGTCCCGCTTCCTTTTAAC+TGG | - | chr5.4:75029143-75029162 | None:intergenic | 50.0% |
| !! | AGAAACAGAGAGGTGCTCCA+AGG | + | chr5.4:75029903-75029922 | MS.gene020747:CDS | 50.0% |
| ACCAATGTTGTCGTGTCCGG+CGG | + | chr5.4:75028049-75028068 | MS.gene020747:CDS | 55.0% | |
| AGCGTGCGATCACAGGATTG+TGG | - | chr5.4:75029572-75029591 | None:intergenic | 55.0% | |
| CACGCTTTCAACCACATCGG+TGG | + | chr5.4:75029586-75029605 | MS.gene020747:intron | 55.0% | |
| CCTGCAACCGCCAATGCAAA+AGG | + | chr5.4:75029000-75029019 | MS.gene020747:CDS | 55.0% | |
| GCTTTCAACCACATCGGTGG+TGG | + | chr5.4:75029589-75029608 | MS.gene020747:intron | 55.0% | |
| GGTGCTCCAAGGAACCAAAG+TGG | + | chr5.4:75029914-75029933 | MS.gene020747:CDS | 55.0% | |
| ! | GGTTGAAAGCGTGCGATCAC+AGG | - | chr5.4:75029579-75029598 | None:intergenic | 55.0% |
| !! | CCTTTTGCATTGGCGGTTGC+AGG | - | chr5.4:75029003-75029022 | None:intergenic | 55.0% |
| CCAATGTTGTCGTGTCCGGC+GGG | + | chr5.4:75028050-75028069 | MS.gene020747:CDS | 60.0% | |
| CCCGCCGGACACGACAACAT+TGG | - | chr5.4:75028053-75028072 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 75028001 | 75030054 | 75028001 | ID=MS.gene020747 |
| chr5.4 | mRNA | 75028001 | 75030054 | 75028001 | ID=MS.gene020747.t1;Parent=MS.gene020747 |
| chr5.4 | exon | 75028001 | 75028149 | 75028001 | ID=MS.gene020747.t1.exon1;Parent=MS.gene020747.t1 |
| chr5.4 | CDS | 75028001 | 75028149 | 75028001 | ID=cds.MS.gene020747.t1;Parent=MS.gene020747.t1 |
| chr5.4 | exon | 75028413 | 75028488 | 75028413 | ID=MS.gene020747.t1.exon2;Parent=MS.gene020747.t1 |
| chr5.4 | CDS | 75028413 | 75028488 | 75028413 | ID=cds.MS.gene020747.t1;Parent=MS.gene020747.t1 |
| chr5.4 | exon | 75028862 | 75029021 | 75028862 | ID=MS.gene020747.t1.exon3;Parent=MS.gene020747.t1 |
| chr5.4 | CDS | 75028862 | 75029021 | 75028862 | ID=cds.MS.gene020747.t1;Parent=MS.gene020747.t1 |
| chr5.4 | exon | 75029138 | 75029248 | 75029138 | ID=MS.gene020747.t1.exon4;Parent=MS.gene020747.t1 |
| chr5.4 | CDS | 75029138 | 75029248 | 75029138 | ID=cds.MS.gene020747.t1;Parent=MS.gene020747.t1 |
| chr5.4 | exon | 75029840 | 75030054 | 75029840 | ID=MS.gene020747.t1.exon5;Parent=MS.gene020747.t1 |
| chr5.4 | CDS | 75029840 | 75030054 | 75029840 | ID=cds.MS.gene020747.t1;Parent=MS.gene020747.t1 |
| Gene Sequence |
| Protein sequence |
