Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02075.t1 | XP_013463003.1 | 95.8 | 683 | 29 | 0 | 1 | 683 | 1 | 683 | 0.00E+00 | 1166.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02075.t1 | A9LNK9 | 62.2 | 688 | 195 | 17 | 1 | 680 | 1 | 631 | 8.5e-189 | 661.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02075.t1 | A0A072V6R5 | 95.8 | 683 | 29 | 0 | 1 | 683 | 1 | 683 | 0.0e+00 | 1166.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene02075.t1 | TF | C3H |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02075.t1 | MTR_2g029540 | 97.804 | 683 | 15 | 0 | 1 | 683 | 1 | 683 | 0.0 | 1384 |
MS.gene02075.t1 | MTR_8g088390 | 25.294 | 170 | 117 | 2 | 231 | 394 | 328 | 493 | 1.38e-12 | 71.2 |
MS.gene02075.t1 | MTR_8g088390 | 25.294 | 170 | 117 | 2 | 231 | 394 | 393 | 558 | 1.53e-12 | 71.2 |
MS.gene02075.t1 | MTR_7g085500 | 29.710 | 138 | 91 | 2 | 259 | 394 | 432 | 565 | 2.62e-12 | 70.5 |
MS.gene02075.t1 | MTR_4g005110 | 26.316 | 152 | 101 | 3 | 259 | 403 | 395 | 542 | 3.60e-12 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene02075.t1 | AT1G30460 | 61.752 | 685 | 203 | 16 | 1 | 680 | 1 | 631 | 0.0 | 665 |
MS.gene02075.t1 | AT1G30460 | 67.225 | 418 | 105 | 8 | 1 | 413 | 1 | 391 | 4.53e-180 | 518 |
MS.gene02075.t1 | AT1G30460 | 56.767 | 266 | 83 | 8 | 1 | 261 | 1 | 239 | 1.59e-75 | 243 |
MS.gene02075.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 4.57e-35 | 137 |
MS.gene02075.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 5.22e-35 | 137 |
MS.gene02075.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 1.47e-34 | 136 |
MS.gene02075.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 2.88e-33 | 133 |
MS.gene02075.t1 | AT4G11970 | 50.667 | 150 | 70 | 3 | 246 | 394 | 61 | 207 | 2.88e-33 | 133 |
MS.gene02075.t1 | AT4G11970 | 52.294 | 109 | 50 | 2 | 287 | 394 | 2 | 109 | 9.96e-23 | 99.4 |
MS.gene02075.t1 | AT4G11970 | 52.294 | 109 | 50 | 2 | 287 | 394 | 2 | 109 | 1.14e-22 | 98.6 |
MS.gene02075.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 401 | 551 | 8.74e-13 | 72.0 |
MS.gene02075.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 358 | 508 | 8.96e-13 | 72.0 |
MS.gene02075.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 345 | 495 | 9.37e-13 | 71.6 |
MS.gene02075.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 401 | 551 | 9.38e-13 | 72.0 |
MS.gene02075.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 388 | 538 | 9.85e-13 | 71.6 |
MS.gene02075.t1 | AT1G55500 | 27.742 | 155 | 102 | 2 | 246 | 394 | 401 | 551 | 9.87e-13 | 71.6 |
MS.gene02075.t1 | AT1G27960 | 29.412 | 153 | 95 | 4 | 259 | 403 | 330 | 477 | 4.71e-12 | 69.3 |
MS.gene02075.t1 | AT1G27960 | 29.412 | 153 | 95 | 4 | 259 | 403 | 256 | 403 | 7.32e-12 | 68.6 |
MS.gene02075.t1 | AT5G61020 | 23.301 | 206 | 144 | 4 | 197 | 394 | 197 | 396 | 8.93e-12 | 68.6 |
MS.gene02075.t1 | AT5G61020 | 23.301 | 206 | 144 | 4 | 197 | 394 | 199 | 398 | 1.05e-11 | 68.2 |
MS.gene02075.t1 | AT3G13460 | 26.452 | 155 | 104 | 2 | 246 | 394 | 428 | 578 | 1.17e-11 | 68.6 |
MS.gene02075.t1 | AT3G13460 | 26.452 | 155 | 104 | 2 | 246 | 394 | 429 | 579 | 1.17e-11 | 68.6 |
MS.gene02075.t1 | AT3G13460 | 26.452 | 155 | 104 | 2 | 246 | 394 | 426 | 576 | 1.28e-11 | 68.6 |
Find 217 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTAGGTTCGGTGGTGATTT+TGG | 0.093023 | 2.2:-58269137 | MS.gene02075:CDS |
TCTTCAAATGGGACAATATC+TGG | 0.215787 | 2.2:+58269431 | None:intergenic |
AGAATTGGTGGTTCTGTTGC+TGG | 0.242654 | 2.2:-58272840 | MS.gene02075:CDS |
GGCATGGGTCCCCGAGGTTT+TGG | 0.279783 | 2.2:-58269170 | MS.gene02075:CDS |
TCTTCTTCATTGTCTTCAAA+TGG | 0.286902 | 2.2:+58269419 | None:intergenic |
CGGGGTGGAGACGGCGGCGG+TGG | 0.296415 | 2.2:+58278870 | None:intergenic |
ATGTTTCCCGGTGGTGGATT+CGG | 0.296653 | 2.2:-58269065 | MS.gene02075:CDS |
CCGTCGACCGGGAGCATTAC+CGG | 0.300595 | 2.2:+58278771 | None:intergenic |
TGTCTGTACAACAAGGAGTA+TGG | 0.310359 | 2.2:-58274305 | MS.gene02075:CDS |
TGATGTTCGATTGGCTTGAT+TGG | 0.314369 | 2.2:+58275378 | None:intergenic |
ACCGGTAAGTTCTCATTGTA+TGG | 0.319343 | 2.2:+58271448 | None:intergenic |
TGCTTCTGCAGGTACAAGTT+AGG | 0.323400 | 2.2:-58275727 | MS.gene02075:intron |
TGTTTCCCGGTGGTGGATTC+GGG | 0.323535 | 2.2:-58269064 | MS.gene02075:CDS |
GCTCATGGAACGGCACATTA+TGG | 0.324684 | 2.2:-58272801 | MS.gene02075:CDS |
GGTGGAGACGGCGGCGGTGG+AGG | 0.346062 | 2.2:+58278873 | None:intergenic |
CTCCCGGTCGACGGAGCTTC+CGG | 0.349933 | 2.2:-58278762 | MS.gene02075:CDS |
AGCAACAGAACCACCAATTC+TGG | 0.361324 | 2.2:+58272842 | None:intergenic |
CTACCACCTCTTGGTGCGTT+TGG | 0.363298 | 2.2:+58268987 | None:intergenic |
TTTCCTGACTCTGCAACTAA+TGG | 0.365592 | 2.2:+58275481 | None:intergenic |
CATTGTATGGATTTCTCAAA+TGG | 0.375064 | 2.2:+58271461 | None:intergenic |
GTTGAACTTGTTGCTGCTGC+TGG | 0.379641 | 2.2:+58275455 | None:intergenic |
GAATTGGTGGTTCTGTTGCT+GGG | 0.384527 | 2.2:-58272839 | MS.gene02075:CDS |
TGAGCCAGATAGTGAACTTA+TGG | 0.387028 | 2.2:-58269876 | MS.gene02075:intron |
CAACCGTACTCGACATTTCC+AGG | 0.391792 | 2.2:-58274205 | MS.gene02075:intron |
TGTGGTGGAGGTGGAGGTGG+TGG | 0.398389 | 2.2:+58268939 | None:intergenic |
GAGAGCTTTGGTCAAGCTGC+AGG | 0.403362 | 2.2:-58269368 | MS.gene02075:CDS |
TCAAACCCTGGTATGTTTCC+CGG | 0.404695 | 2.2:-58269077 | MS.gene02075:CDS |
CCTCTTGGTGCGTTTGGACC+TGG | 0.405425 | 2.2:+58268993 | None:intergenic |
CTTCTTCATTGTCTTCAAAT+GGG | 0.407303 | 2.2:+58269420 | None:intergenic |
TATCGACAATCAGGCCCATT+AGG | 0.408920 | 2.2:+58275697 | None:intergenic |
CCTGCTGGACCCGATGGTTT+CGG | 0.409876 | 2.2:-58269209 | MS.gene02075:CDS |
ATGGGCCTGATTGTCGATAT+AGG | 0.411252 | 2.2:-58275693 | MS.gene02075:CDS |
AAGCGAGAATGCCGATTTGT+CGG | 0.414926 | 2.2:-58278663 | MS.gene02075:CDS |
GCAGATAAGTAGAGATTGTC+AGG | 0.416631 | 2.2:-58269945 | MS.gene02075:intron |
CAAGGAAGAGGTAGGGGCAG+AGG | 0.419654 | 2.2:-58269335 | MS.gene02075:CDS |
AAGGGAGTGAATCCAGATAA+TGG | 0.426746 | 2.2:-58269464 | MS.gene02075:CDS |
TGCCAACTGCTCACCGATAG+AGG | 0.426963 | 2.2:+58269913 | None:intergenic |
TTGCCGGAAGCTCCGTCGAC+CGG | 0.427292 | 2.2:+58278759 | None:intergenic |
GCATGCCTATATCGACAATC+AGG | 0.427943 | 2.2:+58275688 | None:intergenic |
TCTTGACTCTTACCCTGATC+TGG | 0.427989 | 2.2:+58268849 | None:intergenic |
CGGAATGATAGGTATAGTTC+AGG | 0.433860 | 2.2:-58268873 | MS.gene02075:CDS |
CTAGATATTCCTTGAGGTAA+AGG | 0.434257 | 2.2:+58275352 | None:intergenic |
GATGAAGAGGAGGAGAGCTT+TGG | 0.434723 | 2.2:-58269380 | MS.gene02075:CDS |
CTCGGAACATCATGCCAGCT+GGG | 0.436761 | 2.2:+58269108 | None:intergenic |
GGATTATCCTACGGACCTGC+TGG | 0.438065 | 2.2:-58269224 | MS.gene02075:CDS |
CCTGGTATGTTTCCCGGTGG+TGG | 0.438081 | 2.2:-58269071 | MS.gene02075:CDS |
CATACCATAAGTTCACTATC+TGG | 0.440113 | 2.2:+58269872 | None:intergenic |
TATAGTTAGAACCCCTTTGT+TGG | 0.441127 | 2.2:+58275572 | None:intergenic |
CTACCTCTTCCTTGAACAGC+TGG | 0.443773 | 2.2:+58269344 | None:intergenic |
CAGGCGCAAAATCTTGCTAA+TGG | 0.445483 | 2.2:-58275406 | MS.gene02075:CDS |
GGTCCATACGGTCCTAGGTT+CGG | 0.446695 | 2.2:-58269149 | MS.gene02075:CDS |
CCTCGGAACATCATGCCAGC+TGG | 0.447772 | 2.2:+58269107 | None:intergenic |
GATAATCCATCGCCCATCAT+AGG | 0.448656 | 2.2:+58269239 | None:intergenic |
TTTCTCTGTTAAGTGGTTGA+AGG | 0.452217 | 2.2:-58272772 | MS.gene02075:intron |
TGAAGAACCTCTTCAATTGG+AGG | 0.457703 | 2.2:+58275646 | None:intergenic |
CTCCACCACAAAATATAAAC+CGG | 0.459013 | 2.2:-58268926 | MS.gene02075:CDS |
GATGTTCGATTGGCTTGATT+GGG | 0.460125 | 2.2:+58275379 | None:intergenic |
GTATAGTTCAGGACCAGATC+AGG | 0.461811 | 2.2:-58268862 | MS.gene02075:CDS |
GACCAAGTGATCGGAATGAT+AGG | 0.463237 | 2.2:-58268884 | MS.gene02075:CDS |
GACGTAATTTCTCTGTTAAG+TGG | 0.464059 | 2.2:-58272779 | MS.gene02075:CDS |
GTATGGAGAATGTCGTGAAC+AGG | 0.464320 | 2.2:-58278629 | MS.gene02075:CDS |
AGTCGCGGTTGCGGCTCCAT+TGG | 0.465448 | 2.2:+58278816 | None:intergenic |
TCACAAGTTTAACCAACAAA+GGG | 0.465473 | 2.2:-58275584 | MS.gene02075:CDS |
GATCGGGGTGGAGACGGCGG+CGG | 0.465703 | 2.2:+58278867 | None:intergenic |
CTTTACCTCAAGGAATATCT+AGG | 0.467981 | 2.2:-58275351 | MS.gene02075:intron |
CCACCACCGGGAAACATACC+AGG | 0.468279 | 2.2:+58269071 | None:intergenic |
CCTCACATGCATCTTGGGCG+TGG | 0.469309 | 2.2:-58269296 | MS.gene02075:CDS |
GCTGCAGGGCCAGCTGTTCA+AGG | 0.469876 | 2.2:-58269353 | MS.gene02075:CDS |
AAGTAGAGATTGTCAGGAGC+TGG | 0.471206 | 2.2:-58269939 | MS.gene02075:CDS |
AGACAATGAAGAAGAGGAAG+AGG | 0.471242 | 2.2:-58269411 | MS.gene02075:CDS |
TTGACTGGCCTACCACCTCT+TGG | 0.471572 | 2.2:+58268978 | None:intergenic |
CGGTGTGTCGTCACTGGCTA+AGG | 0.473431 | 2.2:-58278735 | MS.gene02075:CDS |
CGAGAAGAAGAGAAAGCAAA+GGG | 0.473546 | 2.2:-58269482 | MS.gene02075:CDS |
AAACCATTAGTTGCAGAGTC+AGG | 0.474307 | 2.2:-58275484 | MS.gene02075:CDS |
AACAGATGGAGTCGCGGTTG+CGG | 0.476724 | 2.2:+58278807 | None:intergenic |
AGGAATCGGATTGGACGATC+GGG | 0.476823 | 2.2:+58278851 | None:intergenic |
AATTGTAAGAATATAAATGT+TGG | 0.477942 | 2.2:+58275617 | None:intergenic |
TCAATTGGAGGAGGAGGTCC+AGG | 0.478308 | 2.2:+58275658 | None:intergenic |
AGTGACGACACACCGTTTGC+CGG | 0.482207 | 2.2:+58278743 | None:intergenic |
TCCATACAATGAGAACTTAC+CGG | 0.482376 | 2.2:-58271449 | MS.gene02075:CDS |
ACCTCTTCAATTGGAGGAGG+AGG | 0.484094 | 2.2:+58275652 | None:intergenic |
CCCATAAAAGGACCGCGTCC+AGG | 0.488496 | 2.2:+58269029 | None:intergenic |
TGATACTGCATGTCATCATC+AGG | 0.498554 | 2.2:+58268804 | None:intergenic |
GCAGCAAGTCAGCCAGAACC+AGG | 0.499588 | 2.2:-58275425 | MS.gene02075:CDS |
TTAGTTGCAGAGTCAGGAAA+TGG | 0.499921 | 2.2:-58275478 | MS.gene02075:CDS |
TCGACGGAGCTTCCGGCAAA+CGG | 0.501734 | 2.2:-58278755 | MS.gene02075:CDS |
TTCGATTGGCTTGATTGGGC+TGG | 0.502203 | 2.2:+58275383 | None:intergenic |
GAGTTGCAATCGTGAAAACT+TGG | 0.502415 | 2.2:-58274331 | MS.gene02075:CDS |
GGCAAACGGTGTGTCGTCAC+TGG | 0.503851 | 2.2:-58278741 | MS.gene02075:CDS |
GGGCCAGCTGTTCAAGGAAG+AGG | 0.506255 | 2.2:-58269347 | MS.gene02075:CDS |
GGAGGTGATTGCAGTGGCGG+CGG | 0.507353 | 2.2:+58278891 | None:intergenic |
TTGGACGATCGGGGTGGAGA+CGG | 0.508352 | 2.2:+58278861 | None:intergenic |
AGTCCTCAACTTCGATTTCG+AGG | 0.508501 | 2.2:-58278935 | MS.gene02075:CDS |
CCGAAACCATCGGGTCCAGC+AGG | 0.512621 | 2.2:+58269209 | None:intergenic |
TAAAGGAGTTGATGTTCGAT+TGG | 0.513355 | 2.2:+58275369 | None:intergenic |
GGGAAACATACCAGGGTTTG+AGG | 0.514013 | 2.2:+58269079 | None:intergenic |
GCATACTAATGATGATATCA+AGG | 0.514229 | 2.2:-58278593 | MS.gene02075:CDS |
AGAGGAAGAAAGTGATGAAG+AGG | 0.516977 | 2.2:-58269393 | MS.gene02075:CDS |
GGAAGGTGGTAAGTAGGAAT+CGG | 0.518366 | 2.2:+58278837 | None:intergenic |
GGAAGAGGTAGGGGCAGAGG+AGG | 0.518803 | 2.2:-58269332 | MS.gene02075:CDS |
CCGGTAATGCTCCCGGTCGA+CGG | 0.519022 | 2.2:-58278771 | MS.gene02075:CDS |
TTCGGGATGATGATGAATCC+TGG | 0.523869 | 2.2:-58269047 | MS.gene02075:CDS |
TATAGGCATGCAAAATCTCC+TGG | 0.524122 | 2.2:-58275676 | MS.gene02075:CDS |
ACCGTATGGACCAAAACCTC+GGG | 0.524155 | 2.2:+58269160 | None:intergenic |
CTCAACTTCGATTTCGAGGG+CGG | 0.524533 | 2.2:-58278931 | MS.gene02075:CDS |
GCGGTTGCGGCTCCATTGGA+AGG | 0.525005 | 2.2:+58278820 | None:intergenic |
TAGGAATCGGATTGGACGAT+CGG | 0.525623 | 2.2:+58278850 | None:intergenic |
TGCCGGAAGCTCCGTCGACC+GGG | 0.526302 | 2.2:+58278760 | None:intergenic |
GTGATTGCAGTGGCGGCGGA+AGG | 0.526955 | 2.2:+58278895 | None:intergenic |
GGAAAAGATAATACCTTCAC+CGG | 0.531864 | 2.2:+58271430 | None:intergenic |
TTTAATCCTATGATGGGCGA+TGG | 0.534666 | 2.2:-58269245 | MS.gene02075:CDS |
GCAAAGATGACATCCAGAAT+TGG | 0.534997 | 2.2:-58272855 | MS.gene02075:CDS |
CGTCGACCGGGAGCATTACC+GGG | 0.535042 | 2.2:+58278772 | None:intergenic |
ACGAGAAGAAGAGAAAGCAA+AGG | 0.536291 | 2.2:-58269483 | MS.gene02075:CDS |
CTCACAAGTTTAACCAACAA+AGG | 0.536291 | 2.2:-58275585 | MS.gene02075:CDS |
TCTGTTGCTGAACATACTCC+CGG | 0.537402 | 2.2:-58278790 | MS.gene02075:CDS |
TCTGCAAACCAAGGTGCGGT+TGG | 0.537410 | 2.2:-58275508 | MS.gene02075:CDS |
AATTGGTGGTTCTGTTGCTG+GGG | 0.537847 | 2.2:-58272838 | MS.gene02075:CDS |
GCTGTTCAAGGAAGAGGTAG+GGG | 0.539653 | 2.2:-58269341 | MS.gene02075:CDS |
GTCTGTACAACAAGGAGTAT+GGG | 0.539886 | 2.2:-58274304 | MS.gene02075:CDS |
CGAGGTCGACCCTCAAACCC+TGG | 0.539982 | 2.2:-58269089 | MS.gene02075:CDS |
CAGCTGTTCAAGGAAGAGGT+AGG | 0.542218 | 2.2:-58269343 | MS.gene02075:CDS |
GGAAGAAAGTGATGAAGAGG+AGG | 0.544461 | 2.2:-58269390 | MS.gene02075:CDS |
ATCGAAGTTGAGGACTCCTT+CGG | 0.545071 | 2.2:+58278942 | None:intergenic |
CATCATCCCGAATCCACCAC+CGG | 0.546239 | 2.2:+58269058 | None:intergenic |
CCAAAATCACCACCGAACCT+AGG | 0.547709 | 2.2:+58269137 | None:intergenic |
TACGGACCTGCTGGACCCGA+TGG | 0.549441 | 2.2:-58269215 | MS.gene02075:CDS |
ATTTGAAGACAATGAAGAAG+AGG | 0.549441 | 2.2:-58269417 | MS.gene02075:CDS |
TCTGGCATACCGAAACCATC+GGG | 0.549485 | 2.2:+58269200 | None:intergenic |
TCCTACTTACCACCTTCCAA+TGG | 0.551728 | 2.2:-58278832 | MS.gene02075:CDS |
GGAAACATACCAGGGTTTGA+GGG | 0.553214 | 2.2:+58269080 | None:intergenic |
TCCATTGGAAGGTGGTAAGT+AGG | 0.553309 | 2.2:+58278831 | None:intergenic |
TACCTATCATTCCGATCACT+TGG | 0.553384 | 2.2:+58268882 | None:intergenic |
ACCCTCTATCGGTGAGCAGT+TGG | 0.555558 | 2.2:-58269915 | MS.gene02075:CDS |
TCTCCGTGTCTTGACCGCCT+AGG | 0.556999 | 2.2:+58268717 | None:intergenic |
GAAAAGTCTCAGTTTCCTCA+AGG | 0.558709 | 2.2:-58275538 | MS.gene02075:CDS |
AGCTGTTCAAGGAAGAGGTA+GGG | 0.558892 | 2.2:-58269342 | MS.gene02075:CDS |
CACGCCCAAGATGCATGTGA+GGG | 0.559255 | 2.2:+58269297 | None:intergenic |
CAATGAGAACTTACCGGTGA+AGG | 0.559575 | 2.2:-58271443 | MS.gene02075:intron |
AAGACATGCTCAGTCAAAGT+GGG | 0.562941 | 2.2:-58268830 | MS.gene02075:CDS |
GGAAACTGGAAATATGCTCA+TGG | 0.564153 | 2.2:-58272816 | MS.gene02075:CDS |
CAGGAGCTGGAACCCTCTAT+CGG | 0.564912 | 2.2:-58269926 | MS.gene02075:CDS |
GTGGTAAGTAGGAATCGGAT+TGG | 0.569036 | 2.2:+58278842 | None:intergenic |
ATCTGGCATACCGAAACCAT+CGG | 0.569716 | 2.2:+58269199 | None:intergenic |
GGTGGAGGTGGTGGAAACAT+CGG | 0.569998 | 2.2:+58268948 | None:intergenic |
AACATCGGAGGCATATTGAC+TGG | 0.571438 | 2.2:+58268963 | None:intergenic |
AAGGAGTATGGGCAACTCAA+AGG | 0.574768 | 2.2:-58274293 | MS.gene02075:CDS |
CCACGCCCAAGATGCATGTG+AGG | 0.577024 | 2.2:+58269296 | None:intergenic |
GGTGGAGGTGATTGCAGTGG+CGG | 0.577871 | 2.2:+58278888 | None:intergenic |
GTCCTCAACTTCGATTTCGA+GGG | 0.578584 | 2.2:-58278934 | MS.gene02075:CDS |
GAGATCAAAGACCAAGTGAT+CGG | 0.578889 | 2.2:-58268893 | MS.gene02075:CDS |
ATACCTGGAAATGTCGAGTA+CGG | 0.579334 | 2.2:+58274202 | None:intergenic |
GACCGTATGGACCAAAACCT+CGG | 0.581465 | 2.2:+58269159 | None:intergenic |
AGAACCTCTTCAATTGGAGG+AGG | 0.582530 | 2.2:+58275649 | None:intergenic |
ACATCAACTCCTTTACCTCA+AGG | 0.583022 | 2.2:-58275361 | MS.gene02075:CDS |
CATACTCCCGGTAATGCTCC+CGG | 0.583758 | 2.2:-58278778 | MS.gene02075:CDS |
TCGGAACATCATGCCAGCTG+GGG | 0.587325 | 2.2:+58269109 | None:intergenic |
TTTGCAGAATTAATTCCTTG+AGG | 0.587634 | 2.2:+58275523 | None:intergenic |
ACAAGTCACAACAAGATGAT+CGG | 0.589232 | 2.2:-58268770 | MS.gene02075:CDS |
CAAGACATGCTCAGTCAAAG+TGG | 0.589412 | 2.2:-58268831 | MS.gene02075:CDS |
CCACAAAATATAAACCGGAC+TGG | 0.589512 | 2.2:-58268921 | MS.gene02075:CDS |
GCACCTAGGCGGTCAAGACA+CGG | 0.591297 | 2.2:-58268720 | MS.gene02075:CDS |
CGTGGAGCAAGACCGATCCA+TGG | 0.593454 | 2.2:-58269278 | MS.gene02075:CDS |
GACGATCGGGGTGGAGACGG+CGG | 0.596912 | 2.2:+58278864 | None:intergenic |
CTAAGGAGTTTGTGTATGAA+AGG | 0.598009 | 2.2:-58278718 | MS.gene02075:CDS |
TATAGTTCAGGACCAGATCA+GGG | 0.598515 | 2.2:-58268861 | MS.gene02075:CDS |
CGATAGTGAAAGTGAAGATG+AGG | 0.599130 | 2.2:-58268742 | MS.gene02075:CDS |
CGCCCAAGATGCATGTGAGG+GGG | 0.601403 | 2.2:+58269299 | None:intergenic |
CGCCCTCGAAATCGAAGTTG+AGG | 0.602456 | 2.2:+58278932 | None:intergenic |
GGAGTATGTTCAGCAACAGA+TGG | 0.603973 | 2.2:+58278793 | None:intergenic |
ATCTGGCTCAGTATATAGCA+AGG | 0.604895 | 2.2:+58269889 | None:intergenic |
CCACCGAACCTAGGACCGTA+TGG | 0.605294 | 2.2:+58269146 | None:intergenic |
AGAGCTTTGGTCAAGCTGCA+GGG | 0.606033 | 2.2:-58269367 | MS.gene02075:CDS |
ATGGGCGATGGATTATCCTA+CGG | 0.607549 | 2.2:-58269233 | MS.gene02075:CDS |
TTCCAAATGGAGGATTCCGA+AGG | 0.608048 | 2.2:-58278958 | None:intergenic |
ACCTCCTCCTCCAATTGAAG+AGG | 0.608458 | 2.2:-58275653 | MS.gene02075:CDS |
AAATGAAGCATTCGACTCTG+TGG | 0.611269 | 2.2:-58274253 | MS.gene02075:CDS |
ATCATCCCGAATCCACCACC+GGG | 0.616028 | 2.2:+58269059 | None:intergenic |
CCAGCTGGCATGATGTTCCG+AGG | 0.617820 | 2.2:-58269107 | MS.gene02075:CDS |
ACGCCCAAGATGCATGTGAG+GGG | 0.617863 | 2.2:+58269298 | None:intergenic |
CCATACGGTCCTAGGTTCGG+TGG | 0.619801 | 2.2:-58269146 | MS.gene02075:CDS |
GCCAACTGCTCACCGATAGA+GGG | 0.624592 | 2.2:+58269914 | None:intergenic |
GTATGAAAGGTGAAGCGTGT+GGG | 0.626726 | 2.2:-58278705 | MS.gene02075:CDS |
GGAGGTGGTGGAAACATCGG+AGG | 0.628646 | 2.2:+58268951 | None:intergenic |
AAGATGACATCCAGAATTGG+TGG | 0.629196 | 2.2:-58272852 | MS.gene02075:CDS |
CGGAACATCATGCCAGCTGG+GGG | 0.631408 | 2.2:+58269110 | None:intergenic |
CTGGAAATATGCTCATGGAA+CGG | 0.636269 | 2.2:-58272811 | MS.gene02075:CDS |
AGACATGCTCAGTCAAAGTG+GGG | 0.641645 | 2.2:-58268829 | MS.gene02075:CDS |
ATTGGTGGTTCTGTTGCTGG+GGG | 0.642974 | 2.2:-58272837 | MS.gene02075:CDS |
GGTCCAAACGCACCAAGAGG+TGG | 0.645123 | 2.2:-58268990 | MS.gene02075:CDS |
ATCGGATTGGACGATCGGGG+TGG | 0.646967 | 2.2:+58278855 | None:intergenic |
CAAACGCACCAAGAGGTGGT+AGG | 0.648402 | 2.2:-58268986 | MS.gene02075:CDS |
GGAATTAATTCTGCAAACCA+AGG | 0.649467 | 2.2:-58275517 | MS.gene02075:CDS |
GGCGGTGGAGGTGATTGCAG+TGG | 0.649508 | 2.2:+58278885 | None:intergenic |
GGAATCGGATTGGACGATCG+GGG | 0.649563 | 2.2:+58278852 | None:intergenic |
TAATTCTGCAAACCAAGGTG+CGG | 0.649941 | 2.2:-58275512 | MS.gene02075:CDS |
GTTGCGGCTCCATTGGAAGG+TGG | 0.651243 | 2.2:+58278823 | None:intergenic |
TAGGCGGTCAAGACACGGAG+AGG | 0.652708 | 2.2:-58268715 | MS.gene02075:CDS |
CAGGGTTTGAGGGTCGACCT+CGG | 0.654624 | 2.2:+58269090 | None:intergenic |
CACAAGTTTAACCAACAAAG+GGG | 0.657204 | 2.2:-58275583 | MS.gene02075:CDS |
ATCGGGTCCAGCAGGTCCGT+AGG | 0.658107 | 2.2:+58269217 | None:intergenic |
TTCAGCAACAGATGGAGTCG+CGG | 0.661796 | 2.2:+58278801 | None:intergenic |
AAAGTGAAGATGAGGCACCT+AGG | 0.663202 | 2.2:-58268734 | MS.gene02075:CDS |
TGTATGAAAGGTGAAGCGTG+TGG | 0.667628 | 2.2:-58278706 | MS.gene02075:CDS |
GATGACATGCAGTATCAGCA+AGG | 0.670720 | 2.2:-58268798 | MS.gene02075:CDS |
GGGGCAGAGGAGGTATGATG+TGG | 0.674845 | 2.2:-58269322 | MS.gene02075:CDS |
AACCCTGGTATGTTTCCCGG+TGG | 0.675845 | 2.2:-58269074 | MS.gene02075:CDS |
AGGCGGTCAAGACACGGAGA+GGG | 0.684082 | 2.2:-58268714 | MS.gene02075:CDS |
CCAGGTCCAAACGCACCAAG+AGG | 0.690365 | 2.2:-58268993 | MS.gene02075:CDS |
TTGGAGTTGTCTGTACAACA+AGG | 0.692074 | 2.2:-58274312 | MS.gene02075:CDS |
GACATGCTCAGTCAAAGTGG+GGG | 0.694693 | 2.2:-58268828 | MS.gene02075:CDS |
ATGATGATGAATCCTGGACG+CGG | 0.695580 | 2.2:-58269041 | MS.gene02075:CDS |
ACACACCTAGATATTCCTTG+AGG | 0.718712 | 2.2:+58275346 | None:intergenic |
GGAGTGAATCCAGATAATGG+AGG | 0.727786 | 2.2:-58269461 | MS.gene02075:CDS |
CACCACCGGGAAACATACCA+GGG | 0.732642 | 2.2:+58269072 | None:intergenic |
GTGAAGATGAGGCACCTAGG+CGG | 0.740940 | 2.2:-58268731 | MS.gene02075:CDS |
CCGTATGGACCAAAACCTCG+GGG | 0.760395 | 2.2:+58269161 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 58268689 | 58278974 | 58268689 | ID=MS.gene02075 |
chr2.2 | mRNA | 58268689 | 58278974 | 58268689 | ID=MS.gene02075.t1;Parent=MS.gene02075 |
chr2.2 | exon | 58278583 | 58278974 | 58278583 | ID=MS.gene02075.t1.exon1;Parent=MS.gene02075.t1 |
chr2.2 | CDS | 58278583 | 58278974 | 58278583 | ID=cds.MS.gene02075.t1;Parent=MS.gene02075.t1 |
chr2.2 | exon | 58275352 | 58275738 | 58275352 | ID=MS.gene02075.t1.exon2;Parent=MS.gene02075.t1 |
chr2.2 | CDS | 58275352 | 58275738 | 58275352 | ID=cds.MS.gene02075.t1;Parent=MS.gene02075.t1 |
chr2.2 | exon | 58274206 | 58274368 | 58274206 | ID=MS.gene02075.t1.exon3;Parent=MS.gene02075.t1 |
chr2.2 | CDS | 58274206 | 58274368 | 58274206 | ID=cds.MS.gene02075.t1;Parent=MS.gene02075.t1 |
chr2.2 | exon | 58272773 | 58272883 | 58272773 | ID=MS.gene02075.t1.exon4;Parent=MS.gene02075.t1 |
chr2.2 | CDS | 58272773 | 58272883 | 58272773 | ID=cds.MS.gene02075.t1;Parent=MS.gene02075.t1 |
chr2.2 | exon | 58271444 | 58271512 | 58271444 | ID=MS.gene02075.t1.exon5;Parent=MS.gene02075.t1 |
chr2.2 | CDS | 58271444 | 58271512 | 58271444 | ID=cds.MS.gene02075.t1;Parent=MS.gene02075.t1 |
chr2.2 | exon | 58269877 | 58269963 | 58269877 | ID=MS.gene02075.t1.exon6;Parent=MS.gene02075.t1 |
chr2.2 | CDS | 58269877 | 58269963 | 58269877 | ID=cds.MS.gene02075.t1;Parent=MS.gene02075.t1 |
chr2.2 | exon | 58268689 | 58269531 | 58268689 | ID=MS.gene02075.t1.exon7;Parent=MS.gene02075.t1 |
chr2.2 | CDS | 58268689 | 58269531 | 58268689 | ID=cds.MS.gene02075.t1;Parent=MS.gene02075.t1 |
Gene Sequence |
Protein sequence |