Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020779.t1 | PNX73002.1 | 42.7 | 843 | 180 | 8 | 109 | 737 | 1 | 754 | 1.00E-160 | 577.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020779.t1 | Q9SZL8 | 28.9 | 194 | 130 | 3 | 265 | 453 | 448 | 638 | 9.9e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020779.t1 | A0A2K3L384 | 42.7 | 843 | 180 | 8 | 109 | 737 | 1 | 754 | 7.2e-161 | 577.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene020779.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020779.t1 | MTR_3g080590 | 88.387 | 155 | 18 | 0 | 1 | 155 | 1 | 155 | 1.06e-79 | 253 |
| MS.gene020779.t1 | MTR_7g446520 | 46.114 | 193 | 89 | 2 | 98 | 290 | 81 | 258 | 1.18e-44 | 164 |
| MS.gene020779.t1 | MTR_0645s0010 | 67.593 | 108 | 29 | 3 | 288 | 395 | 24 | 125 | 1.19e-35 | 131 |
| MS.gene020779.t1 | MTR_7g446480 | 52.679 | 112 | 53 | 0 | 179 | 290 | 140 | 251 | 1.61e-31 | 125 |
| MS.gene020779.t1 | MTR_7g028855 | 45.395 | 152 | 78 | 2 | 98 | 245 | 113 | 263 | 4.62e-30 | 124 |
| MS.gene020779.t1 | MTR_7g446510 | 51.786 | 112 | 54 | 0 | 179 | 290 | 155 | 266 | 7.70e-29 | 118 |
| MS.gene020779.t1 | MTR_1g070355 | 31.818 | 176 | 117 | 2 | 105 | 277 | 74 | 249 | 7.26e-21 | 97.8 |
| MS.gene020779.t1 | MTR_5g076070 | 28.415 | 183 | 116 | 3 | 85 | 264 | 45 | 215 | 1.54e-20 | 93.2 |
| MS.gene020779.t1 | MTR_6g022080 | 27.439 | 164 | 116 | 1 | 104 | 264 | 84 | 247 | 5.09e-18 | 84.7 |
| MS.gene020779.t1 | MTR_8g035530 | 46.753 | 77 | 39 | 1 | 92 | 168 | 1 | 75 | 1.38e-16 | 75.5 |
| MS.gene020779.t1 | MTR_8g468460 | 40.000 | 100 | 57 | 2 | 309 | 408 | 9 | 105 | 2.13e-13 | 67.4 |
| MS.gene020779.t1 | MTR_0402s0040 | 29.885 | 174 | 117 | 5 | 108 | 278 | 29 | 200 | 3.15e-13 | 73.2 |
| MS.gene020779.t1 | MTR_3g450850 | 29.651 | 172 | 109 | 4 | 111 | 270 | 53 | 224 | 7.80e-13 | 71.2 |
| MS.gene020779.t1 | MTR_4g035820 | 29.121 | 182 | 120 | 4 | 111 | 285 | 81 | 260 | 2.75e-12 | 70.9 |
| MS.gene020779.t1 | MTR_6g051425 | 28.261 | 184 | 121 | 5 | 112 | 287 | 24 | 204 | 4.63e-12 | 68.6 |
| MS.gene020779.t1 | MTR_1g008290 | 31.034 | 116 | 75 | 2 | 173 | 288 | 21 | 131 | 8.62e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020779.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.25e-19 | 92.0 |
| MS.gene020779.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 5.38e-19 | 92.0 |
| MS.gene020779.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.07e-19 | 92.0 |
| MS.gene020779.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.74e-19 | 92.0 |
| MS.gene020779.t1 | AT5G28530 | 33.898 | 177 | 111 | 4 | 111 | 282 | 61 | 236 | 6.74e-19 | 92.0 |
| MS.gene020779.t1 | AT4G38180 | 29.469 | 207 | 132 | 5 | 252 | 453 | 441 | 638 | 1.94e-18 | 90.9 |
| MS.gene020779.t1 | AT4G38180 | 30.337 | 267 | 170 | 9 | 33 | 290 | 3 | 262 | 1.14e-15 | 82.0 |
| MS.gene020779.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene020779.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene020779.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene020779.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene020779.t1 | AT4G15090 | 30.516 | 213 | 139 | 5 | 288 | 499 | 452 | 656 | 4.66e-18 | 89.7 |
| MS.gene020779.t1 | AT3G22170 | 27.679 | 224 | 151 | 5 | 288 | 508 | 461 | 676 | 3.11e-16 | 84.0 |
| MS.gene020779.t1 | AT3G22170 | 27.679 | 224 | 151 | 5 | 288 | 508 | 461 | 676 | 3.11e-16 | 84.0 |
| MS.gene020779.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 2.04e-15 | 81.3 |
| MS.gene020779.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 386 | 613 | 2.04e-15 | 81.3 |
| MS.gene020779.t1 | AT2G27110 | 26.829 | 246 | 158 | 8 | 250 | 491 | 241 | 468 | 2.14e-15 | 80.9 |
| MS.gene020779.t1 | AT4G38170 | 26.425 | 193 | 136 | 3 | 260 | 449 | 210 | 399 | 2.17e-15 | 80.5 |
| MS.gene020779.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 2.63e-12 | 70.9 |
| MS.gene020779.t1 | AT1G10240 | 30.508 | 177 | 108 | 6 | 111 | 276 | 54 | 226 | 2.63e-12 | 70.9 |
| MS.gene020779.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 9.11e-12 | 69.3 |
| MS.gene020779.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 9.11e-12 | 69.3 |
| MS.gene020779.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 343 | 506 | 1.21e-11 | 68.9 |
| MS.gene020779.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.22e-11 | 68.9 |
| MS.gene020779.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.30e-11 | 68.9 |
| MS.gene020779.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 400 | 563 | 1.30e-11 | 68.9 |
| MS.gene020779.t1 | AT4G19990 | 25.904 | 166 | 121 | 2 | 288 | 453 | 414 | 577 | 1.40e-11 | 68.6 |
| MS.gene020779.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.48e-11 | 67.4 |
| MS.gene020779.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.54e-11 | 67.4 |
| MS.gene020779.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 3.54e-11 | 67.4 |
| MS.gene020779.t1 | AT1G76320 | 26.111 | 180 | 123 | 5 | 277 | 452 | 374 | 547 | 9.32e-11 | 65.9 |
Find 142 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTGATCCACCATTATT+TGG | 0.155571 | 5.4:-74633577 | None:intergenic |
| TCAATGTTGATTGTGATATT+TGG | 0.171428 | 5.4:-74633340 | None:intergenic |
| CTCTTGCAAATCAGACTTTC+AGG | 0.192125 | 5.4:-74632551 | None:intergenic |
| TCACTCAATTTACGGTAATT+AGG | 0.235603 | 5.4:-74631252 | None:intergenic |
| CCCATAGTTTCTCAATGTTT+TGG | 0.242135 | 5.4:-74633852 | None:intergenic |
| TATCAACTTCACTCAATTTA+CGG | 0.276736 | 5.4:-74631260 | None:intergenic |
| ATCACTCGCAACAAATTTAC+TGG | 0.280329 | 5.4:-74632804 | None:intergenic |
| TAACACCATACCCAACATTA+TGG | 0.313783 | 5.4:-74633528 | None:intergenic |
| AGGACTTGGGTTTATCAAAA+AGG | 0.326599 | 5.4:+74631368 | MS.gene020779:CDS |
| CAGTGTTAGAATGTGATGAT+AGG | 0.338987 | 5.4:-74633624 | None:intergenic |
| TGATAAACCCAAGTCCTTCA+TGG | 0.346028 | 5.4:-74631362 | None:intergenic |
| AGATGATGATATAAGGGATA+TGG | 0.347376 | 5.4:+74630915 | MS.gene020779:CDS |
| ACGACTTTGTTCGTACGATT+TGG | 0.356788 | 5.4:+74631163 | MS.gene020779:CDS |
| ACACCAATTCCAGCAAGTTC+TGG | 0.360337 | 5.4:-74632959 | None:intergenic |
| ATGTGACAGATGATGATATA+AGG | 0.367162 | 5.4:+74630908 | MS.gene020779:CDS |
| CTCGGAACATTGTGTGTTCC+AGG | 0.370631 | 5.4:-74633673 | None:intergenic |
| TAAGAGCGCAAGTGATTATA+AGG | 0.371814 | 5.4:+74632703 | MS.gene020779:CDS |
| TGTAAGAACATGTCATATCT+TGG | 0.387474 | 5.4:+74631314 | MS.gene020779:CDS |
| TGTTCTAATTGTAGAAATCC+TGG | 0.392101 | 5.4:+74632917 | MS.gene020779:CDS |
| CACTATGGGGTGCCAAATAA+TGG | 0.393131 | 5.4:+74633565 | MS.gene020779:CDS |
| ATCCATGTTGTCATACTTCA+TGG | 0.394339 | 5.4:-74632522 | None:intergenic |
| ACTGGAACACACAATGTTCC+TGG | 0.398163 | 5.4:+74633655 | MS.gene020779:CDS |
| ATCATTCGCAACAAATTTGT+TGG | 0.403036 | 5.4:-74632831 | None:intergenic |
| TCTAACACTGCTCTGCATAC+TGG | 0.407068 | 5.4:+74633637 | MS.gene020779:CDS |
| ATATAATTTCACGGATCATC+AGG | 0.409639 | 5.4:+74631395 | MS.gene020779:CDS |
| GATTATAAGGAGGCTCTAGA+AGG | 0.413898 | 5.4:+74632716 | MS.gene020779:CDS |
| GATTCATTATCAGACTCAAT+AGG | 0.414121 | 5.4:-74633013 | None:intergenic |
| GCACTGGTATTACACGTAAG+AGG | 0.418801 | 5.4:+74633221 | MS.gene020779:CDS |
| AACAAATACAAGCACTAGAA+AGG | 0.422563 | 5.4:+74633300 | MS.gene020779:CDS |
| TGTCCAGAACTTGCTGGAAT+TGG | 0.422787 | 5.4:+74632956 | MS.gene020779:CDS |
| AAAGTTTAAAGATGTCAAAA+AGG | 0.436388 | 5.4:+74632301 | MS.gene020779:CDS |
| TACGGTAATTAGGCATCAAA+TGG | 0.442752 | 5.4:-74631242 | None:intergenic |
| CGCAGAACAATTAGTTCGAA+TGG | 0.445789 | 5.4:-74631124 | None:intergenic |
| AAGGGTGGCCATGAAGGACT+TGG | 0.449428 | 5.4:+74631354 | MS.gene020779:CDS |
| TAAATTTGTTGCGAGTGATA+AGG | 0.460501 | 5.4:+74632808 | MS.gene020779:CDS |
| AAATGGACATGACGAGGATA+AGG | 0.462491 | 5.4:+74632781 | MS.gene020779:CDS |
| GTAAGAACATGTCATATCTT+GGG | 0.464989 | 5.4:+74631315 | MS.gene020779:CDS |
| GCGTCAATTAGTATGCAATA+AGG | 0.467578 | 5.4:+74631050 | MS.gene020779:CDS |
| AACGCAAAGGAGCTAATTCA+TGG | 0.469712 | 5.4:-74631215 | None:intergenic |
| AGTGTTAGAATGTGATGATA+GGG | 0.470693 | 5.4:-74633623 | None:intergenic |
| TTCGAATGGTTAGCGTAGAT+CGG | 0.471186 | 5.4:-74631110 | None:intergenic |
| AATAGCCGTCATGAGGGAAA+TGG | 0.477370 | 5.4:+74632764 | MS.gene020779:CDS |
| CAAGGGAAAGAGAACTTTGA+TGG | 0.478759 | 5.4:+74630868 | MS.gene020779:CDS |
| CGGACGTGTCCAGAACTTGC+TGG | 0.483560 | 5.4:+74632950 | MS.gene020779:CDS |
| AAAGGACTTATATAATTTCA+CGG | 0.493961 | 5.4:+74631386 | MS.gene020779:CDS |
| GAAATCCTGGGCACACAATA+CGG | 0.497533 | 5.4:+74632930 | MS.gene020779:CDS |
| CACTCTGTAGCAGTGTCAAA+TGG | 0.499398 | 5.4:+74633178 | MS.gene020779:CDS |
| ATGTGAAGCGTGATTCTAAT+GGG | 0.504223 | 5.4:+74631016 | MS.gene020779:CDS |
| AATGGTGTGACCCGTGACTT+TGG | 0.505092 | 5.4:+74633457 | MS.gene020779:CDS |
| GCAAGGGTTAAAATACAAGA+TGG | 0.508614 | 5.4:+74631417 | MS.gene020779:CDS |
| GTATCACTATGTACATCAAA+AGG | 0.509968 | 5.4:-74630637 | None:intergenic |
| GGTCAAAAGGGTGGCCATGA+AGG | 0.510809 | 5.4:+74631348 | MS.gene020779:CDS |
| CCACGGGTTTGAAGTAAGAA+AGG | 0.512169 | 5.4:+74630990 | MS.gene020779:CDS |
| TTAGAACAACATCTTGTCCT+TGG | 0.513299 | 5.4:-74632902 | None:intergenic |
| TGTGATGATAGGGTAGTTGT+CGG | 0.517812 | 5.4:-74633613 | None:intergenic |
| ATTTAGTCTGCAACTTGTCA+AGG | 0.524883 | 5.4:-74632439 | None:intergenic |
| CAAGGGTTAAAATACAAGAT+GGG | 0.527779 | 5.4:+74631418 | MS.gene020779:CDS |
| AACAACGATGTTCGTACTGA+TGG | 0.529175 | 5.4:+74630796 | MS.gene020779:CDS |
| AAAGTCTGATTTGCAAGAGA+TGG | 0.531904 | 5.4:+74632555 | MS.gene020779:CDS |
| GATGTGAAGCGTGATTCTAA+TGG | 0.532287 | 5.4:+74631015 | MS.gene020779:CDS |
| GTTCTAATTGTAGAAATCCT+GGG | 0.533951 | 5.4:+74632918 | MS.gene020779:CDS |
| AAGTGCCCCTCGACGAAACA+TGG | 0.534361 | 5.4:-74632645 | None:intergenic |
| CACGTCCGTATTGTGTGCCC+AGG | 0.534840 | 5.4:-74632935 | None:intergenic |
| ACAAATACAAGCACTAGAAA+GGG | 0.535750 | 5.4:+74633301 | MS.gene020779:CDS |
| GTAGTTGTCGGAGGGAATTG+TGG | 0.539742 | 5.4:-74633601 | None:intergenic |
| AATAAGGAGGGTGTTAATGA+TGG | 0.543414 | 5.4:+74631066 | MS.gene020779:CDS |
| AAGACAGCCATTGTGCAAGT+TGG | 0.545484 | 5.4:+74633503 | MS.gene020779:CDS |
| AGCTAATTCATGGTTGTGAG+AGG | 0.545517 | 5.4:-74631205 | None:intergenic |
| ACTTCATGGCACAAATAATG+TGG | 0.547507 | 5.4:-74632508 | None:intergenic |
| TCGTCATTTGCCTCCCAAGA+AGG | 0.555407 | 5.4:+74632605 | MS.gene020779:CDS |
| CACTGGTATTACACGTAAGA+GGG | 0.559146 | 5.4:+74633222 | MS.gene020779:CDS |
| GGTGTCGTGTCTGAAGATCA+AGG | 0.560464 | 5.4:+74632977 | MS.gene020779:CDS |
| CGAGATGTTGAGAAAAGCAC+TGG | 0.563759 | 5.4:+74633205 | MS.gene020779:CDS |
| TTCATCATTACCTTCTTGGG+AGG | 0.565482 | 5.4:-74632615 | None:intergenic |
| GTCTGAAGATCAAGGGGAGA+AGG | 0.567087 | 5.4:+74632985 | MS.gene020779:CDS |
| TATTGTTTGCAAAATACCAC+GGG | 0.573778 | 5.4:+74630974 | MS.gene020779:CDS |
| CCTTTGACATTCACCATCAG+TGG | 0.574175 | 5.4:-74632854 | None:intergenic |
| GTGGAATTTAACCATGGTAA+TGG | 0.576772 | 5.4:+74630832 | MS.gene020779:CDS |
| GCACAAATAATGTGGGAACA+TGG | 0.578248 | 5.4:-74632500 | None:intergenic |
| TGTGACAGATGATGATATAA+GGG | 0.581249 | 5.4:+74630909 | MS.gene020779:CDS |
| AAATGACCATGTTTCGTCGA+GGG | 0.581274 | 5.4:+74632639 | MS.gene020779:CDS |
| GTGTCGTGTCTGAAGATCAA+GGG | 0.581492 | 5.4:+74632978 | MS.gene020779:CDS |
| GCTAATTCATGGTTGTGAGA+GGG | 0.581523 | 5.4:-74631204 | None:intergenic |
| TCAATTAGTATGCAATAAGG+AGG | 0.584633 | 5.4:+74631053 | MS.gene020779:CDS |
| AATGACCATGTTTCGTCGAG+GGG | 0.585541 | 5.4:+74632640 | MS.gene020779:CDS |
| GCAAGTTGGAACCATAATGT+TGG | 0.585606 | 5.4:+74633517 | MS.gene020779:CDS |
| TAAGATAAATAGCCGTCATG+AGG | 0.585792 | 5.4:+74632757 | MS.gene020779:CDS |
| AGGGTGGCCATGAAGGACTT+GGG | 0.586883 | 5.4:+74631355 | MS.gene020779:CDS |
| GAAGCTTCAAAGATATTCAC+CGG | 0.587720 | 5.4:+74632275 | MS.gene020779:CDS |
| AAGATAAATAGCCGTCATGA+GGG | 0.587755 | 5.4:+74632758 | MS.gene020779:CDS |
| ATACTCACCGGTGTATAACT+CGG | 0.588936 | 5.4:-74633691 | None:intergenic |
| ATGATAGGGTAGTTGTCGGA+GGG | 0.591320 | 5.4:-74633609 | None:intergenic |
| ATTTCACGGATCATCAGGCA+AGG | 0.592596 | 5.4:+74631400 | MS.gene020779:CDS |
| TGGAACCATAATGTTGGGTA+TGG | 0.594448 | 5.4:+74633523 | MS.gene020779:CDS |
| CTTCATGGCACAAATAATGT+GGG | 0.594948 | 5.4:-74632507 | None:intergenic |
| TATGAGTGCGTTGAAGAATG+TGG | 0.597255 | 5.4:+74633794 | MS.gene020779:CDS |
| GAACGAGATGAAGATGAGGA+TGG | 0.598765 | 5.4:+74632356 | MS.gene020779:CDS |
| GTATTGTTTGCAAAATACCA+CGG | 0.599210 | 5.4:+74630973 | MS.gene020779:CDS |
| CAAGTTGGAACCATAATGTT+GGG | 0.599464 | 5.4:+74633518 | MS.gene020779:CDS |
| GTCAATGCAGTTGTCAGCAT+AGG | 0.607551 | 5.4:-74632239 | None:intergenic |
| AAGGGTTAAAATACAAGATG+GGG | 0.610552 | 5.4:+74631419 | MS.gene020779:CDS |
| AAACATCGCAGTGACTATTG+TGG | 0.611836 | 5.4:+74633828 | MS.gene020779:CDS |
| ATTATAAGGAGGCTCTAGAA+GGG | 0.613050 | 5.4:+74632717 | MS.gene020779:CDS |
| GACACTGATAGTGATACAGA+TGG | 0.614810 | 5.4:+74630694 | MS.gene020779:CDS |
| GCTACTTTGAGTTACTTCCA+AGG | 0.617165 | 5.4:+74631450 | MS.gene020779:CDS |
| GTTGATAAACAAGTTGCTAG+TGG | 0.617676 | 5.4:+74631276 | MS.gene020779:CDS |
| TGATAGTGATACAGATGGGG+TGG | 0.618742 | 5.4:+74630699 | MS.gene020779:CDS |
| CATGTCCATTTCCCTCATGA+CGG | 0.619225 | 5.4:-74632769 | None:intergenic |
| GATGATAGGGTAGTTGTCGG+AGG | 0.619255 | 5.4:-74633610 | None:intergenic |
| CATTGAACGAGATGAAGATG+AGG | 0.623154 | 5.4:+74632352 | MS.gene020779:CDS |
| ACATAGTGATACAGATGAGG+TGG | 0.623452 | 5.4:+74630648 | MS.gene020779:CDS |
| CCACTGATGGTGAATGTCAA+AGG | 0.624002 | 5.4:+74632854 | MS.gene020779:CDS |
| TATGGTTCCAACTTGCACAA+TGG | 0.627946 | 5.4:-74633510 | None:intergenic |
| TTTCACGGATCATCAGGCAA+GGG | 0.637022 | 5.4:+74631401 | MS.gene020779:CDS |
| CCTTTCTTACTTCAAACCCG+TGG | 0.639832 | 5.4:-74630990 | None:intergenic |
| CATTGCAAACACCATTACCA+TGG | 0.642035 | 5.4:-74630843 | None:intergenic |
| TATGGGGTGCCAAATAATGG+TGG | 0.646881 | 5.4:+74633568 | MS.gene020779:CDS |
| AATGGTGTTTGCAATGAGCA+AGG | 0.648235 | 5.4:+74630850 | MS.gene020779:CDS |
| GCTAGTGGTCTACATTCGCA+AGG | 0.649023 | 5.4:+74631291 | MS.gene020779:CDS |
| ATCAAATGGACAAAACGCAA+AGG | 0.651947 | 5.4:-74631228 | None:intergenic |
| AAAATGACCATGTTTCGTCG+AGG | 0.652304 | 5.4:+74632638 | MS.gene020779:CDS |
| ATGGTGTTTGCAATGAGCAA+GGG | 0.657603 | 5.4:+74630851 | MS.gene020779:CDS |
| TCTGTAGCAGTGTCAAATGG+TGG | 0.657609 | 5.4:+74633181 | MS.gene020779:CDS |
| TGATGGAGATGCAGACGGTG+TGG | 0.660310 | 5.4:+74630813 | MS.gene020779:CDS |
| ACACTGATAGTGATACAGAT+GGG | 0.663559 | 5.4:+74630695 | MS.gene020779:CDS |
| TGTCGTGTCTGAAGATCAAG+GGG | 0.668190 | 5.4:+74632979 | MS.gene020779:CDS |
| TGCCATGAAGTATGACAACA+TGG | 0.671427 | 5.4:+74632520 | MS.gene020779:CDS |
| TGAATGTCAAAGGTGCCCGT+AGG | 0.674674 | 5.4:+74632864 | MS.gene020779:CDS |
| CAATTAGTATGCAATAAGGA+GGG | 0.675920 | 5.4:+74631054 | MS.gene020779:CDS |
| TGTAGACGCTTTGAACGTAG+AGG | 0.677604 | 5.4:+74632473 | MS.gene020779:CDS |
| CAATGTTCCGAGTTATACAC+CGG | 0.682160 | 5.4:+74633684 | MS.gene020779:CDS |
| CATTTGACACTGCTACAGAG+TGG | 0.682675 | 5.4:-74633177 | None:intergenic |
| GAGCGCAAGTGATTATAAGG+AGG | 0.683366 | 5.4:+74632706 | MS.gene020779:CDS |
| TGTTGCGAATGATCCACTGA+TGG | 0.687875 | 5.4:+74632841 | MS.gene020779:CDS |
| GACGGTGTGGAATTTAACCA+TGG | 0.688761 | 5.4:+74630826 | MS.gene020779:CDS |
| TGAGGGAAATGGACATGACG+AGG | 0.691164 | 5.4:+74632775 | MS.gene020779:CDS |
| CGTACTGATGGAGATGCAGA+CGG | 0.711480 | 5.4:+74630808 | MS.gene020779:CDS |
| ACATAGACTATTGAACGCAG+CGG | 0.718507 | 5.4:-74632669 | None:intergenic |
| CACTGATAGTGATACAGATG+GGG | 0.724418 | 5.4:+74630696 | MS.gene020779:CDS |
| TGTACATAGTGATACAGATG+AGG | 0.739686 | 5.4:+74630645 | MS.gene020779:CDS |
| AATTATGCAAGAAATCCACA+AGG | 0.743577 | 5.4:-74632148 | None:intergenic |
| GGATATGGAATTCAACACAG+AGG | 0.763384 | 5.4:+74630930 | MS.gene020779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTAATATGCACTA+TGG | + | chr5.4:74633550-74633569 | MS.gene020779:CDS | 15.0% |
| !!! | ATTATTTTAATATGCACTAT+GGG | + | chr5.4:74633551-74633570 | MS.gene020779:CDS | 15.0% |
| !!! | TCATAAACTGTTTTAAATAT+AGG | - | chr5.4:74633779-74633798 | None:intergenic | 15.0% |
| !!! | TGAAATTGTATATGATATTT+TGG | + | chr5.4:74633106-74633125 | MS.gene020779:intron | 15.0% |
| !! | AAAGGACTTATATAATTTCA+CGG | + | chr5.4:74631386-74631405 | MS.gene020779:CDS | 20.0% |
| !! | AAAGTTTAAAGATGTCAAAA+AGG | + | chr5.4:74632301-74632320 | MS.gene020779:CDS | 20.0% |
| !!! | ATTTTCAAGGTTAATGTATT+TGG | + | chr5.4:74632389-74632408 | MS.gene020779:CDS | 20.0% |
| !!! | TTATTTTAATATGCACTATG+GGG | + | chr5.4:74633552-74633571 | MS.gene020779:CDS | 20.0% |
| ! | AATTAAAGCACAAGCAAAAA+TGG | - | chr5.4:74631682-74631701 | None:intergenic | 25.0% |
| ! | ATATCCACTAAAAATGACAA+GGG | - | chr5.4:74631640-74631659 | None:intergenic | 25.0% |
| ! | CAGCAAATATACTATAACAA+AGG | - | chr5.4:74633376-74633395 | None:intergenic | 25.0% |
| ! | GATGGAAAAAATAAGAAGAA+TGG | + | chr5.4:74631084-74631103 | MS.gene020779:CDS | 25.0% |
| ! | GGTGGGTAAAAAAAATTTAT+CGG | + | chr5.4:74632006-74632025 | MS.gene020779:intron | 25.0% |
| ! | TAAACAATCAAAATACTCAC+CGG | - | chr5.4:74633706-74633725 | None:intergenic | 25.0% |
| ! | TATATCCACTAAAAATGACA+AGG | - | chr5.4:74631641-74631660 | None:intergenic | 25.0% |
| ! | TATCAACTTCACTCAATTTA+CGG | - | chr5.4:74631263-74631282 | None:intergenic | 25.0% |
| !! | CAAAAAAGATGTAGCTTTTT+CGG | + | chr5.4:74632412-74632431 | MS.gene020779:CDS | 25.0% |
| !! | GACATCTTTAAACTTTTTAC+CGG | - | chr5.4:74632297-74632316 | None:intergenic | 25.0% |
| !! | TCAATGTTGATTGTGATATT+TGG | - | chr5.4:74633343-74633362 | None:intergenic | 25.0% |
| !! | TTTTTCATCATTACCTTCTT+GGG | - | chr5.4:74632621-74632640 | None:intergenic | 25.0% |
| !!! | GGTTCTAAATTTGTTTTCAA+AGG | + | chr5.4:74631731-74631750 | MS.gene020779:intron | 25.0% |
| !!! | TTGTTTTGATTGTTGTAGAA+TGG | + | chr5.4:74633439-74633458 | MS.gene020779:intron | 25.0% |
| !!! | TTTTTTCATCATTACCTTCT+TGG | - | chr5.4:74632622-74632641 | None:intergenic | 25.0% |
| AAAACTGATCCACCATTATT+TGG | - | chr5.4:74633580-74633599 | None:intergenic | 30.0% | |
| AAACAATAGAGACATACAAG+TGG | + | chr5.4:74631709-74631728 | MS.gene020779:intron | 30.0% | |
| AACAAATACAAGCACTAGAA+AGG | + | chr5.4:74633300-74633319 | MS.gene020779:CDS | 30.0% | |
| AACAATAGAGACATACAAGT+GGG | + | chr5.4:74631710-74631729 | MS.gene020779:intron | 30.0% | |
| AAGGGTTAAAATACAAGATG+GGG | + | chr5.4:74631419-74631438 | MS.gene020779:CDS | 30.0% | |
| AATTATGCAAGAAATCCACA+AGG | - | chr5.4:74632151-74632170 | None:intergenic | 30.0% | |
| ACAAATACAAGCACTAGAAA+GGG | + | chr5.4:74633301-74633320 | MS.gene020779:CDS | 30.0% | |
| ACCTATAGAAAGAACAAGTA+TGG | + | chr5.4:74631609-74631628 | MS.gene020779:intron | 30.0% | |
| AGATGATGATATAAGGGATA+TGG | + | chr5.4:74630915-74630934 | MS.gene020779:CDS | 30.0% | |
| AGTGTTAGAATGTGATGATA+GGG | - | chr5.4:74633626-74633645 | None:intergenic | 30.0% | |
| ATACTTGTTCTTTCTATAGG+TGG | - | chr5.4:74631610-74631629 | None:intergenic | 30.0% | |
| ATATAATTTCACGGATCATC+AGG | + | chr5.4:74631395-74631414 | MS.gene020779:CDS | 30.0% | |
| ATCATTCGCAACAAATTTGT+TGG | - | chr5.4:74632834-74632853 | None:intergenic | 30.0% | |
| ATGTGACAGATGATGATATA+AGG | + | chr5.4:74630908-74630927 | MS.gene020779:CDS | 30.0% | |
| CAAGGGTTAAAATACAAGAT+GGG | + | chr5.4:74631418-74631437 | MS.gene020779:CDS | 30.0% | |
| CAATTAGTATGCAATAAGGA+GGG | + | chr5.4:74631054-74631073 | MS.gene020779:CDS | 30.0% | |
| GAGTTTACATTTACAGATGA+TGG | + | chr5.4:74631504-74631523 | MS.gene020779:intron | 30.0% | |
| GATTCATTATCAGACTCAAT+AGG | - | chr5.4:74633016-74633035 | None:intergenic | 30.0% | |
| GTAAGAACATGTCATATCTT+GGG | + | chr5.4:74631315-74631334 | MS.gene020779:CDS | 30.0% | |
| GTATCACTATGTACATCAAA+AGG | - | chr5.4:74630640-74630659 | None:intergenic | 30.0% | |
| GTATTGTTTGCAAAATACCA+CGG | + | chr5.4:74630973-74630992 | MS.gene020779:CDS | 30.0% | |
| GTTCTAATTGTAGAAATCCT+GGG | + | chr5.4:74632918-74632937 | MS.gene020779:CDS | 30.0% | |
| TATCCACTAAAAATGACAAG+GGG | - | chr5.4:74631639-74631658 | None:intergenic | 30.0% | |
| TATTGTTTGCAAAATACCAC+GGG | + | chr5.4:74630974-74630993 | MS.gene020779:CDS | 30.0% | |
| TCAATTAGTATGCAATAAGG+AGG | + | chr5.4:74631053-74631072 | MS.gene020779:CDS | 30.0% | |
| TCACTCAATTTACGGTAATT+AGG | - | chr5.4:74631255-74631274 | None:intergenic | 30.0% | |
| TCCATACTTGTTCTTTCTAT+AGG | - | chr5.4:74631613-74631632 | None:intergenic | 30.0% | |
| TGTAAGAACATGTCATATCT+TGG | + | chr5.4:74631314-74631333 | MS.gene020779:CDS | 30.0% | |
| TGTGACAGATGATGATATAA+GGG | + | chr5.4:74630909-74630928 | MS.gene020779:CDS | 30.0% | |
| TGTTCTAATTGTAGAAATCC+TGG | + | chr5.4:74632917-74632936 | MS.gene020779:CDS | 30.0% | |
| TTCTAACACCACACAAAAAA+TGG | - | chr5.4:74632067-74632086 | None:intergenic | 30.0% | |
| ! | ATTTTTCATGTCCAAAGTCA+CGG | - | chr5.4:74633471-74633490 | None:intergenic | 30.0% |
| ! | TTTTGGATGTTTGTCATACA+TGG | - | chr5.4:74631757-74631776 | None:intergenic | 30.0% |
| !! | ATTTTGACCTATCAAACAAC+AGG | + | chr5.4:74631985-74632004 | MS.gene020779:intron | 30.0% |
| !! | TAAATTTGTTGCGAGTGATA+AGG | + | chr5.4:74632808-74632827 | MS.gene020779:CDS | 30.0% |
| !!! | ACGCCTAGAAAACATTTTTT+GGG | + | chr5.4:74631527-74631546 | MS.gene020779:intron | 30.0% |
| !!! | CATATCTTGGGTTTTTTGAT+GGG | + | chr5.4:74631327-74631346 | MS.gene020779:CDS | 30.0% |
| !!! | TCATATCTTGGGTTTTTTGA+TGG | + | chr5.4:74631326-74631345 | MS.gene020779:CDS | 30.0% |
| !!! | TGGAAACATTGTCATTTTCA+AGG | + | chr5.4:74632376-74632395 | MS.gene020779:CDS | 30.0% |
| AAGATAAATAGCCGTCATGA+GGG | + | chr5.4:74632758-74632777 | MS.gene020779:CDS | 35.0% | |
| ACTTCATGGCACAAATAATG+TGG | - | chr5.4:74632511-74632530 | None:intergenic | 35.0% | |
| AGGACTTGGGTTTATCAAAA+AGG | + | chr5.4:74631368-74631387 | MS.gene020779:CDS | 35.0% | |
| ATCAAATGGACAAAACGCAA+AGG | - | chr5.4:74631231-74631250 | None:intergenic | 35.0% | |
| ATCACTCGCAACAAATTTAC+TGG | - | chr5.4:74632807-74632826 | None:intergenic | 35.0% | |
| ATCCATGTTGTCATACTTCA+TGG | - | chr5.4:74632525-74632544 | None:intergenic | 35.0% | |
| ATGTGAAGCGTGATTCTAAT+GGG | + | chr5.4:74631016-74631035 | MS.gene020779:CDS | 35.0% | |
| ATTTAGTCTGCAACTTGTCA+AGG | - | chr5.4:74632442-74632461 | None:intergenic | 35.0% | |
| CAGTGTTAGAATGTGATGAT+AGG | - | chr5.4:74633627-74633646 | None:intergenic | 35.0% | |
| CTGAAAAGTTTGAATCTGAG+TGG | + | chr5.4:74631946-74631965 | MS.gene020779:intron | 35.0% | |
| CTTCATGGCACAAATAATGT+GGG | - | chr5.4:74632510-74632529 | None:intergenic | 35.0% | |
| GAAGCTTCAAAGATATTCAC+CGG | + | chr5.4:74632275-74632294 | MS.gene020779:CDS | 35.0% | |
| GAGTTGTGTTTCCAAATACA+AGG | + | chr5.4:74631820-74631839 | MS.gene020779:intron | 35.0% | |
| GCAAGGGTTAAAATACAAGA+TGG | + | chr5.4:74631417-74631436 | MS.gene020779:CDS | 35.0% | |
| GCGTCAATTAGTATGCAATA+AGG | + | chr5.4:74631050-74631069 | MS.gene020779:CDS | 35.0% | |
| GTATGACAAACATCCAAAAG+CGG | + | chr5.4:74631758-74631777 | MS.gene020779:intron | 35.0% | |
| GTGGAATTTAACCATGGTAA+TGG | + | chr5.4:74630832-74630851 | MS.gene020779:CDS | 35.0% | |
| TAACACCATACCCAACATTA+TGG | - | chr5.4:74633531-74633550 | None:intergenic | 35.0% | |
| TAAGATAAATAGCCGTCATG+AGG | + | chr5.4:74632757-74632776 | MS.gene020779:CDS | 35.0% | |
| TACGGTAATTAGGCATCAAA+TGG | - | chr5.4:74631245-74631264 | None:intergenic | 35.0% | |
| TATCATTACTCATAGACAGC+TGG | - | chr5.4:74633144-74633163 | None:intergenic | 35.0% | |
| TGTACATAGTGATACAGATG+AGG | + | chr5.4:74630645-74630664 | MS.gene020779:CDS | 35.0% | |
| TTAGAACAACATCTTGTCCT+TGG | - | chr5.4:74632905-74632924 | None:intergenic | 35.0% | |
| ! | AAAGTCTGATTTGCAAGAGA+TGG | + | chr5.4:74632555-74632574 | MS.gene020779:CDS | 35.0% |
| ! | ACACTGATAGTGATACAGAT+GGG | + | chr5.4:74630695-74630714 | MS.gene020779:CDS | 35.0% |
| ! | AGGTTTGACTATGAGTGTTT+TGG | + | chr5.4:74631564-74631583 | MS.gene020779:intron | 35.0% |
| ! | CAAGTTGGAACCATAATGTT+GGG | + | chr5.4:74633518-74633537 | MS.gene020779:CDS | 35.0% |
| ! | CACTCAGATTCAAACTTTTC+AGG | - | chr5.4:74631948-74631967 | None:intergenic | 35.0% |
| ! | CTGCCCAAAAAATGTTTTCT+AGG | - | chr5.4:74631533-74631552 | None:intergenic | 35.0% |
| ! | GTTGATAAACAAGTTGCTAG+TGG | + | chr5.4:74631276-74631295 | MS.gene020779:CDS | 35.0% |
| ! | TAAGAGCGCAAGTGATTATA+AGG | + | chr5.4:74632703-74632722 | MS.gene020779:CDS | 35.0% |
| ! | TTATCGGTTGAAGAGAATGT+GGG | + | chr5.4:74632022-74632041 | MS.gene020779:intron | 35.0% |
| ! | TTTAGTGGATATAACCACCA+TGG | + | chr5.4:74631648-74631667 | MS.gene020779:intron | 35.0% |
| ! | TTTATCGGTTGAAGAGAATG+TGG | + | chr5.4:74632021-74632040 | MS.gene020779:intron | 35.0% |
| ! | TTTGAGTTACTTCCAAGGTA+AGG | + | chr5.4:74631455-74631474 | MS.gene020779:intron | 35.0% |
| ! | TTTTTCATGTCCAAAGTCAC+GGG | - | chr5.4:74633470-74633489 | None:intergenic | 35.0% |
| !! | AATAAGGAGGGTGTTAATGA+TGG | + | chr5.4:74631066-74631085 | MS.gene020779:CDS | 35.0% |
| !! | ATTATAAGGAGGCTCTAGAA+GGG | + | chr5.4:74632717-74632736 | MS.gene020779:CDS | 35.0% |
| !! | CAAAAATGGTTGTTTCTCCA+TGG | - | chr5.4:74631668-74631687 | None:intergenic | 35.0% |
| !! | TGCTGAAAATTGTGTTGCTT+TGG | + | chr5.4:74633391-74633410 | MS.gene020779:intron | 35.0% |
| !!! | AAACCCCTTGTCATTTTTAG+TGG | + | chr5.4:74631633-74631652 | MS.gene020779:intron | 35.0% |
| !!! | GACGCCTAGAAAACATTTTT+TGG | + | chr5.4:74631526-74631545 | MS.gene020779:intron | 35.0% |
| !!! | GGTTTTTTGATGGGTCAAAA+GGG | + | chr5.4:74631336-74631355 | MS.gene020779:CDS | 35.0% |
| !!! | GTGTTGACTTTTTACTCCTA+CGG | - | chr5.4:74632883-74632902 | None:intergenic | 35.0% |
| !!! | TCAAACTTTTCAGGTGTACA+AGG | - | chr5.4:74631939-74631958 | None:intergenic | 35.0% |
| !!! | TGTTGACTTTTTACTCCTAC+GGG | - | chr5.4:74632882-74632901 | None:intergenic | 35.0% |
| AAAAGCGGTGATTACTGATG+GGG | + | chr5.4:74631773-74631792 | MS.gene020779:intron | 40.0% | |
| AAAATGACCATGTTTCGTCG+AGG | + | chr5.4:74632638-74632657 | MS.gene020779:CDS | 40.0% | |
| AAACATCGCAGTGACTATTG+TGG | + | chr5.4:74633828-74633847 | MS.gene020779:CDS | 40.0% | |
| AAATGACCATGTTTCGTCGA+GGG | + | chr5.4:74632639-74632658 | MS.gene020779:CDS | 40.0% | |
| AAATGGACATGACGAGGATA+AGG | + | chr5.4:74632781-74632800 | MS.gene020779:CDS | 40.0% | |
| AACAACGATGTTCGTACTGA+TGG | + | chr5.4:74630796-74630815 | MS.gene020779:CDS | 40.0% | |
| AACGCAAAGGAGCTAATTCA+TGG | - | chr5.4:74631218-74631237 | None:intergenic | 40.0% | |
| AATGGTGTTTGCAATGAGCA+AGG | + | chr5.4:74630850-74630869 | MS.gene020779:CDS | 40.0% | |
| ACATAGACTATTGAACGCAG+CGG | - | chr5.4:74632672-74632691 | None:intergenic | 40.0% | |
| ACATAGTGATACAGATGAGG+TGG | + | chr5.4:74630648-74630667 | MS.gene020779:CDS | 40.0% | |
| ACGACTTTGTTCGTACGATT+TGG | + | chr5.4:74631163-74631182 | MS.gene020779:CDS | 40.0% | |
| AGAACGACATCAATCTGTGA+AGG | + | chr5.4:74632083-74632102 | MS.gene020779:intron | 40.0% | |
| AGATGTCAAAAAGGCGATAG+AGG | + | chr5.4:74632310-74632329 | MS.gene020779:CDS | 40.0% | |
| AGCTAATTCATGGTTGTGAG+AGG | - | chr5.4:74631208-74631227 | None:intergenic | 40.0% | |
| AGTTTGAATCTGAGTGGAAG+AGG | + | chr5.4:74631952-74631971 | MS.gene020779:intron | 40.0% | |
| ATACTCACCGGTGTATAACT+CGG | - | chr5.4:74633694-74633713 | None:intergenic | 40.0% | |
| ATGGTGTTTGCAATGAGCAA+GGG | + | chr5.4:74630851-74630870 | MS.gene020779:CDS | 40.0% | |
| CAAAAGCGGTGATTACTGAT+GGG | + | chr5.4:74631772-74631791 | MS.gene020779:intron | 40.0% | |
| CAAGGGAAAGAGAACTTTGA+TGG | + | chr5.4:74630868-74630887 | MS.gene020779:CDS | 40.0% | |
| CAATGTTCCGAGTTATACAC+CGG | + | chr5.4:74633684-74633703 | MS.gene020779:CDS | 40.0% | |
| CACTGGTATTACACGTAAGA+GGG | + | chr5.4:74633222-74633241 | MS.gene020779:CDS | 40.0% | |
| CATTGAACGAGATGAAGATG+AGG | + | chr5.4:74632352-74632371 | MS.gene020779:CDS | 40.0% | |
| CATTGCAAACACCATTACCA+TGG | - | chr5.4:74630846-74630865 | None:intergenic | 40.0% | |
| CGCAGAACAATTAGTTCGAA+TGG | - | chr5.4:74631127-74631146 | None:intergenic | 40.0% | |
| CTCTTGCAAATCAGACTTTC+AGG | - | chr5.4:74632554-74632573 | None:intergenic | 40.0% | |
| GATGTGAAGCGTGATTCTAA+TGG | + | chr5.4:74631015-74631034 | MS.gene020779:CDS | 40.0% | |
| GCACAAATAATGTGGGAACA+TGG | - | chr5.4:74632503-74632522 | None:intergenic | 40.0% | |
| GCTAATTCATGGTTGTGAGA+GGG | - | chr5.4:74631207-74631226 | None:intergenic | 40.0% | |
| GGAGTAAAAAGTCAACACCA+AGG | + | chr5.4:74632885-74632904 | MS.gene020779:CDS | 40.0% | |
| GGATATGGAATTCAACACAG+AGG | + | chr5.4:74630930-74630949 | MS.gene020779:CDS | 40.0% | |
| GTTTGAATCTGAGTGGAAGA+GGG | + | chr5.4:74631953-74631972 | MS.gene020779:intron | 40.0% | |
| TATCAGTATCAGCCTTACCT+TGG | - | chr5.4:74631470-74631489 | None:intergenic | 40.0% | |
| TATGAGTGCGTTGAAGAATG+TGG | + | chr5.4:74633794-74633813 | MS.gene020779:CDS | 40.0% | |
| TATGGTTCCAACTTGCACAA+TGG | - | chr5.4:74633513-74633532 | None:intergenic | 40.0% | |
| TGACCTATCAAACAACAGGT+GGG | + | chr5.4:74631989-74632008 | MS.gene020779:intron | 40.0% | |
| TGATAAACCCAAGTCCTTCA+TGG | - | chr5.4:74631365-74631384 | None:intergenic | 40.0% | |
| TGCCATGAAGTATGACAACA+TGG | + | chr5.4:74632520-74632539 | MS.gene020779:CDS | 40.0% | |
| TGGAACCATAATGTTGGGTA+TGG | + | chr5.4:74633523-74633542 | MS.gene020779:CDS | 40.0% | |
| TGTGATGATAGGGTAGTTGT+CGG | - | chr5.4:74633616-74633635 | None:intergenic | 40.0% | |
| TTCATCATTACCTTCTTGGG+AGG | - | chr5.4:74632618-74632637 | None:intergenic | 40.0% | |
| TTCGAATGGTTAGCGTAGAT+CGG | - | chr5.4:74631113-74631132 | None:intergenic | 40.0% | |
| TTGACCTATCAAACAACAGG+TGG | + | chr5.4:74631988-74632007 | MS.gene020779:intron | 40.0% | |
| TTTGGGCAGATTCTACTAGT+AGG | + | chr5.4:74631544-74631563 | MS.gene020779:intron | 40.0% | |
| ! | CACTGATAGTGATACAGATG+GGG | + | chr5.4:74630696-74630715 | MS.gene020779:CDS | 40.0% |
| ! | GACACTGATAGTGATACAGA+TGG | + | chr5.4:74630694-74630713 | MS.gene020779:CDS | 40.0% |
| ! | GCAAGTTGGAACCATAATGT+TGG | + | chr5.4:74633517-74633536 | MS.gene020779:CDS | 40.0% |
| ! | GCTACTTTGAGTTACTTCCA+AGG | + | chr5.4:74631450-74631469 | MS.gene020779:CDS | 40.0% |
| ! | TTACCCACCTGTTGTTTGAT+AGG | - | chr5.4:74631995-74632014 | None:intergenic | 40.0% |
| !! | AAATGGTTGTTTCTCCATGG+TGG | - | chr5.4:74631665-74631684 | None:intergenic | 40.0% |
| !! | GATTATAAGGAGGCTCTAGA+AGG | + | chr5.4:74632716-74632735 | MS.gene020779:CDS | 40.0% |
| !! | TTTTTGATGGGTCAAAAGGG+TGG | + | chr5.4:74631339-74631358 | MS.gene020779:CDS | 40.0% |
| !!! | ATGCGAGACCATTTTTTGTG+TGG | + | chr5.4:74632056-74632075 | MS.gene020779:intron | 40.0% |
| !!! | GGGTTTTTTGATGGGTCAAA+AGG | + | chr5.4:74631335-74631354 | MS.gene020779:CDS | 40.0% |
| AAGACAGCCATTGTGCAAGT+TGG | + | chr5.4:74633503-74633522 | MS.gene020779:CDS | 45.0% | |
| AATAGCCGTCATGAGGGAAA+TGG | + | chr5.4:74632764-74632783 | MS.gene020779:CDS | 45.0% | |
| AATGACCATGTTTCGTCGAG+GGG | + | chr5.4:74632640-74632659 | MS.gene020779:CDS | 45.0% | |
| ACACCAATTCCAGCAAGTTC+TGG | - | chr5.4:74632962-74632981 | None:intergenic | 45.0% | |
| ACTGGAACACACAATGTTCC+TGG | + | chr5.4:74633655-74633674 | MS.gene020779:CDS | 45.0% | |
| AGCATTTCGATGCAAATGCC+AGG | - | chr5.4:74631859-74631878 | None:intergenic | 45.0% | |
| ATGATAGGGTAGTTGTCGGA+GGG | - | chr5.4:74633612-74633631 | None:intergenic | 45.0% | |
| ATTTCACGGATCATCAGGCA+AGG | + | chr5.4:74631400-74631419 | MS.gene020779:CDS | 45.0% | |
| CAAAGGCGATGCCTTGTATT+TGG | - | chr5.4:74631834-74631853 | None:intergenic | 45.0% | |
| CACTCTGTAGCAGTGTCAAA+TGG | + | chr5.4:74633178-74633197 | MS.gene020779:CDS | 45.0% | |
| CATGTCCATTTCCCTCATGA+CGG | - | chr5.4:74632772-74632791 | None:intergenic | 45.0% | |
| CATTTGACACTGCTACAGAG+TGG | - | chr5.4:74633180-74633199 | None:intergenic | 45.0% | |
| CCAAAAGCGGTGATTACTGA+TGG | + | chr5.4:74631771-74631790 | MS.gene020779:intron | 45.0% | |
| CCTTTCTTACTTCAAACCCG+TGG | - | chr5.4:74630993-74631012 | None:intergenic | 45.0% | |
| CCTTTGACATTCACCATCAG+TGG | - | chr5.4:74632857-74632876 | None:intergenic | 45.0% | |
| GAAATCCTGGGCACACAATA+CGG | + | chr5.4:74632930-74632949 | MS.gene020779:CDS | 45.0% | |
| GAACGAGATGAAGATGAGGA+TGG | + | chr5.4:74632356-74632375 | MS.gene020779:CDS | 45.0% | |
| GACGGTGTGGAATTTAACCA+TGG | + | chr5.4:74630826-74630845 | MS.gene020779:CDS | 45.0% | |
| GAGCGCAAGTGATTATAAGG+AGG | + | chr5.4:74632706-74632725 | MS.gene020779:CDS | 45.0% | |
| GTCAATGCAGTTGTCAGCAT+AGG | - | chr5.4:74632242-74632261 | None:intergenic | 45.0% | |
| GTGTCGTGTCTGAAGATCAA+GGG | + | chr5.4:74632978-74632997 | MS.gene020779:CDS | 45.0% | |
| TCTAACACTGCTCTGCATAC+TGG | + | chr5.4:74633637-74633656 | MS.gene020779:CDS | 45.0% | |
| TCTGTAGCAGTGTCAAATGG+TGG | + | chr5.4:74633181-74633200 | MS.gene020779:CDS | 45.0% | |
| TGTCGTGTCTGAAGATCAAG+GGG | + | chr5.4:74632979-74632998 | MS.gene020779:CDS | 45.0% | |
| TGTTGCGAATGATCCACTGA+TGG | + | chr5.4:74632841-74632860 | MS.gene020779:CDS | 45.0% | |
| TTTCACGGATCATCAGGCAA+GGG | + | chr5.4:74631401-74631420 | MS.gene020779:CDS | 45.0% | |
| ! | CACTATGGGGTGCCAAATAA+TGG | + | chr5.4:74633565-74633584 | MS.gene020779:CDS | 45.0% |
| ! | CCACGGGTTTGAAGTAAGAA+AGG | + | chr5.4:74630990-74631009 | MS.gene020779:CDS | 45.0% |
| ! | CCACTGATGGTGAATGTCAA+AGG | + | chr5.4:74632854-74632873 | MS.gene020779:CDS | 45.0% |
| ! | CCATCAGTAATCACCGCTTT+TGG | - | chr5.4:74631774-74631793 | None:intergenic | 45.0% |
| ! | CGAGATGTTGAGAAAAGCAC+TGG | + | chr5.4:74633205-74633224 | MS.gene020779:CDS | 45.0% |
| ! | GCACTGGTATTACACGTAAG+AGG | + | chr5.4:74633221-74633240 | MS.gene020779:CDS | 45.0% |
| ! | TATGGGGTGCCAAATAATGG+TGG | + | chr5.4:74633568-74633587 | MS.gene020779:CDS | 45.0% |
| ! | TGATAGTGATACAGATGGGG+TGG | + | chr5.4:74630699-74630718 | MS.gene020779:CDS | 45.0% |
| ! | TGTAGACGCTTTGAACGTAG+AGG | + | chr5.4:74632473-74632492 | MS.gene020779:CDS | 45.0% |
| !! | TGTCCAGAACTTGCTGGAAT+TGG | + | chr5.4:74632956-74632975 | MS.gene020779:CDS | 45.0% |
| !!! | CCACAAGGCTGTTTTTGTGT+CGG | - | chr5.4:74632136-74632155 | None:intergenic | 45.0% |
| AATGGTGTGACCCGTGACTT+TGG | + | chr5.4:74633457-74633476 | MS.gene020779:CDS | 50.0% | |
| CCGACACAAAAACAGCCTTG+TGG | + | chr5.4:74632133-74632152 | MS.gene020779:CDS | 50.0% | |
| CTCGGAACATTGTGTGTTCC+AGG | - | chr5.4:74633676-74633695 | None:intergenic | 50.0% | |
| GATGATAGGGTAGTTGTCGG+AGG | - | chr5.4:74633613-74633632 | None:intergenic | 50.0% | |
| GCTAGTGGTCTACATTCGCA+AGG | + | chr5.4:74631291-74631310 | MS.gene020779:CDS | 50.0% | |
| GTAGTTGTCGGAGGGAATTG+TGG | - | chr5.4:74633604-74633623 | None:intergenic | 50.0% | |
| GTCTGAAGATCAAGGGGAGA+AGG | + | chr5.4:74632985-74633004 | MS.gene020779:CDS | 50.0% | |
| TCGTCATTTGCCTCCCAAGA+AGG | + | chr5.4:74632605-74632624 | MS.gene020779:CDS | 50.0% | |
| TGAGGGAAATGGACATGACG+AGG | + | chr5.4:74632775-74632794 | MS.gene020779:CDS | 50.0% | |
| ! | CGTACTGATGGAGATGCAGA+CGG | + | chr5.4:74630808-74630827 | MS.gene020779:CDS | 50.0% |
| ! | GGTGTCGTGTCTGAAGATCA+AGG | + | chr5.4:74632977-74632996 | MS.gene020779:CDS | 50.0% |
| !! | TGAATGTCAAAGGTGCCCGT+AGG | + | chr5.4:74632864-74632883 | MS.gene020779:CDS | 50.0% |
| AAGGGTGGCCATGAAGGACT+TGG | + | chr5.4:74631354-74631373 | MS.gene020779:CDS | 55.0% | |
| AAGTGCCCCTCGACGAAACA+TGG | - | chr5.4:74632648-74632667 | None:intergenic | 55.0% | |
| AGGGTGGCCATGAAGGACTT+GGG | + | chr5.4:74631355-74631374 | MS.gene020779:CDS | 55.0% | |
| GATGCAAATGCCAGGCGCAA+AGG | - | chr5.4:74631851-74631870 | None:intergenic | 55.0% | |
| GGTCAAAAGGGTGGCCATGA+AGG | + | chr5.4:74631348-74631367 | MS.gene020779:CDS | 55.0% | |
| TGATGGAGATGCAGACGGTG+TGG | + | chr5.4:74630813-74630832 | MS.gene020779:CDS | 55.0% | |
| CACGTCCGTATTGTGTGCCC+AGG | - | chr5.4:74632938-74632957 | None:intergenic | 60.0% | |
| CGGACGTGTCCAGAACTTGC+TGG | + | chr5.4:74632950-74632969 | MS.gene020779:CDS | 60.0% | |
| !! | CAAGGCATCGCCTTTGCGCC+TGG | + | chr5.4:74631838-74631857 | MS.gene020779:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 74630610 | 74633863 | 74630610 | ID=MS.gene020779 |
| chr5.4 | mRNA | 74630610 | 74633863 | 74630610 | ID=MS.gene020779.t1;Parent=MS.gene020779 |
| chr5.4 | exon | 74630610 | 74631471 | 74630610 | ID=MS.gene020779.t1.exon1;Parent=MS.gene020779.t1 |
| chr5.4 | CDS | 74630610 | 74631471 | 74630610 | ID=cds.MS.gene020779.t1;Parent=MS.gene020779.t1 |
| chr5.4 | exon | 74632108 | 74633048 | 74632108 | ID=MS.gene020779.t1.exon2;Parent=MS.gene020779.t1 |
| chr5.4 | CDS | 74632108 | 74633048 | 74632108 | ID=cds.MS.gene020779.t1;Parent=MS.gene020779.t1 |
| chr5.4 | exon | 74633145 | 74633366 | 74633145 | ID=MS.gene020779.t1.exon3;Parent=MS.gene020779.t1 |
| chr5.4 | CDS | 74633145 | 74633366 | 74633145 | ID=cds.MS.gene020779.t1;Parent=MS.gene020779.t1 |
| chr5.4 | exon | 74633457 | 74633705 | 74633457 | ID=MS.gene020779.t1.exon4;Parent=MS.gene020779.t1 |
| chr5.4 | CDS | 74633457 | 74633705 | 74633457 | ID=cds.MS.gene020779.t1;Parent=MS.gene020779.t1 |
| chr5.4 | exon | 74633792 | 74633863 | 74633792 | ID=MS.gene020779.t1.exon5;Parent=MS.gene020779.t1 |
| chr5.4 | CDS | 74633792 | 74633863 | 74633792 | ID=cds.MS.gene020779.t1;Parent=MS.gene020779.t1 |
| Gene Sequence |
| Protein sequence |
