Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020804.t1 | XP_024639803.1 | 86.2 | 123 | 8 | 1 | 3 | 125 | 7 | 120 | 1.20E-48 | 202.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020804.t1 | Q84W66 | 42.5 | 113 | 53 | 2 | 9 | 121 | 46 | 146 | 5.6e-15 | 82.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020804.t1 | I3TAX2 | 86.2 | 123 | 8 | 1 | 3 | 125 | 7 | 120 | 8.5e-49 | 202.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene020804.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020804.t1 | MTR_5g095900 | 86.957 | 115 | 6 | 1 | 11 | 125 | 3 | 108 | 1.28e-68 | 205 |
MS.gene020804.t1 | MTR_5g095860 | 66.957 | 115 | 19 | 2 | 11 | 125 | 3 | 98 | 7.08e-44 | 142 |
MS.gene020804.t1 | MTR_4g133952 | 43.750 | 112 | 54 | 1 | 10 | 121 | 44 | 146 | 3.19e-24 | 93.6 |
MS.gene020804.t1 | MTR_4g119500 | 40.164 | 122 | 61 | 2 | 1 | 122 | 2 | 111 | 5.26e-23 | 87.8 |
MS.gene020804.t1 | MTR_4g133938 | 43.220 | 118 | 53 | 3 | 7 | 122 | 3 | 108 | 6.12e-23 | 87.8 |
MS.gene020804.t1 | MTR_0392s0020 | 39.344 | 122 | 59 | 3 | 1 | 122 | 1 | 107 | 1.19e-22 | 87.0 |
MS.gene020804.t1 | MTR_1g039040 | 43.810 | 105 | 47 | 2 | 17 | 121 | 2 | 94 | 4.41e-22 | 87.0 |
MS.gene020804.t1 | MTR_5g095740 | 42.276 | 123 | 57 | 3 | 1 | 121 | 1 | 111 | 2.63e-21 | 84.7 |
MS.gene020804.t1 | MTR_1g083070 | 42.157 | 102 | 50 | 1 | 21 | 122 | 1 | 93 | 2.74e-21 | 83.2 |
MS.gene020804.t1 | MTR_3g058980 | 40.323 | 124 | 62 | 2 | 1 | 121 | 1 | 115 | 3.23e-21 | 84.7 |
MS.gene020804.t1 | MTR_2g026710 | 40.517 | 116 | 57 | 2 | 7 | 122 | 3 | 106 | 4.52e-21 | 83.6 |
MS.gene020804.t1 | MTR_1g072790 | 39.683 | 126 | 62 | 3 | 1 | 121 | 1 | 117 | 2.32e-20 | 82.0 |
MS.gene020804.t1 | MTR_7g061270 | 37.288 | 118 | 64 | 2 | 5 | 122 | 8 | 115 | 9.34e-20 | 80.5 |
MS.gene020804.t1 | MTR_7g100650 | 37.607 | 117 | 63 | 2 | 5 | 121 | 8 | 114 | 1.21e-19 | 80.1 |
MS.gene020804.t1 | MTR_8g091720 | 39.316 | 117 | 59 | 2 | 6 | 122 | 13 | 117 | 1.66e-19 | 80.5 |
MS.gene020804.t1 | MTR_5g095920 | 94.737 | 38 | 2 | 0 | 88 | 125 | 17 | 54 | 2.01e-19 | 78.6 |
MS.gene020804.t1 | MTR_1g088860 | 38.889 | 108 | 57 | 1 | 15 | 122 | 27 | 125 | 1.75e-18 | 77.8 |
MS.gene020804.t1 | MTR_8g093920 | 38.776 | 98 | 51 | 1 | 24 | 121 | 40 | 128 | 1.05e-16 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene020804.t1 | AT5G47670 | 44.248 | 113 | 51 | 2 | 9 | 121 | 17 | 117 | 4.24e-24 | 92.4 |
MS.gene020804.t1 | AT1G21970 | 42.149 | 121 | 53 | 3 | 6 | 121 | 39 | 147 | 5.88e-24 | 92.8 |
MS.gene020804.t1 | AT5G47670 | 44.248 | 113 | 51 | 2 | 9 | 121 | 46 | 146 | 8.59e-24 | 92.4 |
MS.gene020804.t1 | AT5G47670 | 44.248 | 113 | 51 | 2 | 9 | 121 | 46 | 146 | 8.59e-24 | 92.4 |
MS.gene020804.t1 | AT4G14540 | 41.322 | 121 | 59 | 2 | 1 | 121 | 1 | 109 | 1.53e-22 | 87.4 |
MS.gene020804.t1 | AT2G38880 | 37.398 | 123 | 65 | 2 | 1 | 123 | 1 | 111 | 5.70e-22 | 85.5 |
MS.gene020804.t1 | AT5G47640 | 45.714 | 105 | 45 | 2 | 18 | 122 | 24 | 116 | 1.94e-21 | 85.5 |
MS.gene020804.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 4.04e-21 | 82.4 |
MS.gene020804.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 4.19e-21 | 83.2 |
MS.gene020804.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 4.19e-21 | 83.2 |
MS.gene020804.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 4.19e-21 | 83.2 |
MS.gene020804.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 5.13e-21 | 82.8 |
MS.gene020804.t1 | AT2G38880 | 37.903 | 124 | 61 | 3 | 1 | 120 | 1 | 112 | 5.98e-21 | 83.6 |
MS.gene020804.t1 | AT2G38880 | 37.903 | 124 | 61 | 3 | 1 | 120 | 1 | 112 | 5.98e-21 | 83.6 |
MS.gene020804.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 2.57e-20 | 81.6 |
MS.gene020804.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 2.57e-20 | 81.6 |
MS.gene020804.t1 | AT2G38880 | 36.885 | 122 | 65 | 2 | 1 | 122 | 1 | 110 | 2.57e-20 | 81.6 |
MS.gene020804.t1 | AT2G47810 | 39.252 | 107 | 56 | 1 | 15 | 121 | 42 | 139 | 6.20e-19 | 78.2 |
MS.gene020804.t1 | AT1G09030 | 39.394 | 99 | 51 | 1 | 27 | 125 | 6 | 95 | 1.18e-18 | 76.6 |
MS.gene020804.t1 | AT3G53340 | 39.252 | 107 | 55 | 2 | 16 | 122 | 22 | 118 | 1.22e-18 | 76.3 |
MS.gene020804.t1 | AT3G53340 | 38.938 | 113 | 55 | 3 | 16 | 124 | 22 | 124 | 1.55e-18 | 77.0 |
MS.gene020804.t1 | AT3G53340 | 38.938 | 113 | 55 | 3 | 16 | 124 | 22 | 124 | 1.55e-18 | 77.0 |
MS.gene020804.t1 | AT2G37060 | 37.931 | 116 | 62 | 2 | 6 | 121 | 13 | 118 | 1.90e-18 | 77.0 |
MS.gene020804.t1 | AT2G37060 | 37.931 | 116 | 62 | 2 | 6 | 121 | 13 | 118 | 1.90e-18 | 77.0 |
MS.gene020804.t1 | AT2G37060 | 37.931 | 116 | 62 | 2 | 6 | 121 | 13 | 118 | 1.90e-18 | 77.0 |
MS.gene020804.t1 | AT3G53340 | 39.252 | 107 | 55 | 2 | 16 | 122 | 22 | 118 | 2.14e-18 | 77.0 |
MS.gene020804.t1 | AT3G53340 | 39.252 | 107 | 55 | 2 | 16 | 122 | 22 | 118 | 2.14e-18 | 77.0 |
MS.gene020804.t1 | AT2G13570 | 37.383 | 107 | 55 | 2 | 4 | 110 | 19 | 113 | 1.53e-16 | 73.2 |
Find 17 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACAATCTAACTTGCAATAA+TGG | 0.273922 | 5.4:-75251600 | None:intergenic |
CCTGATCTAACTTGCAATAA+TGG | 0.274206 | 5.4:-75251573 | None:intergenic |
CATCATTTCCTTGCTTTCAT+CGG | 0.454642 | 5.4:-75251503 | None:intergenic |
AATATCATGGCTGATCATCC+TGG | 0.475004 | 5.4:+75249945 | None:intergenic |
CAATCTATGCACATTGGCAA+TGG | 0.483306 | 5.4:-75251446 | None:intergenic |
CCATTATTGCAAGTTAGATC+AGG | 0.486813 | 5.4:+75251573 | MS.gene020804:CDS |
TCTTGCACCCTCGAACTAGC+TGG | 0.492382 | 5.4:-75251403 | None:intergenic |
CGATGAAAGCAAGGAAATGA+TGG | 0.499610 | 5.4:+75251504 | MS.gene020804:CDS |
ATCTAACTTGCAATAATGGT+TGG | 0.501533 | 5.4:-75251596 | None:intergenic |
AATCTATGCACATTGGCAAT+GGG | 0.506843 | 5.4:-75251445 | None:intergenic |
ATCTAACTTGCAATAATGGT+TGG | 0.512109 | 5.4:-75251569 | None:intergenic |
TTACTTGAACTTGACTCTCC+AGG | 0.547483 | 5.4:-75249963 | None:intergenic |
GAGTGCAACCAGCTAGTTCG+AGG | 0.550758 | 5.4:+75251395 | MS.gene020804:CDS |
CATTAGCTTTGTTACTGCTG+AGG | 0.551315 | 5.4:+75251546 | MS.gene020804:CDS |
TTTCATCAATCTATGCACAT+TGG | 0.552004 | 5.4:-75251452 | None:intergenic |
ATGCACATTGGCAATGGGAA+AGG | 0.554205 | 5.4:-75251440 | None:intergenic |
AGTGCAACCAGCTAGTTCGA+GGG | 0.693334 | 5.4:+75251396 | MS.gene020804:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAAAAAAAACAGTTAAAA+AGG | - | chr5.4:75250774-75250793 | None:intergenic | 15.0% |
!! | TAAAAAGATAGTATAATTTC+CGG | - | chr5.4:75250735-75250754 | None:intergenic | 15.0% |
!!! | GTTTTACAAATTTAAATCTT+TGG | - | chr5.4:75250000-75250019 | None:intergenic | 15.0% |
!! | AAAAAGATAGTATAATTTCC+GGG | - | chr5.4:75250734-75250753 | None:intergenic | 20.0% |
!! | ACAAACAATTAAAGTTAGTT+TGG | + | chr5.4:75251284-75251303 | MS.gene020804:intron | 20.0% |
!! | ATAAAAAAGTTAAATTCACC+CGG | + | chr5.4:75250713-75250732 | MS.gene020804:intron | 20.0% |
!! | GATTATATTGATACTTGTAA+TGG | + | chr5.4:75250148-75250167 | MS.gene020804:intron | 20.0% |
!! | GATTTACTTTGTGATTATTA+AGG | - | chr5.4:75250311-75250330 | None:intergenic | 20.0% |
!! | TATAATGGTTTACATTAGAA+AGG | - | chr5.4:75250874-75250893 | None:intergenic | 20.0% |
!! | TATATGTAAATGTTAGAGAA+TGG | + | chr5.4:75251373-75251392 | MS.gene020804:intron | 20.0% |
!!! | ATTTTTTTCATGCCATAATT+GGG | + | chr5.4:75250987-75251006 | MS.gene020804:intron | 20.0% |
!!! | TATTTTTTTCATGCCATAAT+TGG | + | chr5.4:75250986-75251005 | MS.gene020804:intron | 20.0% |
! | AACACATCTATAAGGTATAA+TGG | - | chr5.4:75250889-75250908 | None:intergenic | 25.0% |
! | AGATCCATATATACATATGT+AGG | - | chr5.4:75250428-75250447 | None:intergenic | 25.0% |
! | AGGATATAAAAGTCAATTGT+GGG | + | chr5.4:75250336-75250355 | MS.gene020804:intron | 25.0% |
! | ATCAATACATACACACATAA+TGG | - | chr5.4:75250131-75250150 | None:intergenic | 25.0% |
! | ATCCATATATACATATGTAG+GGG | - | chr5.4:75250426-75250445 | None:intergenic | 25.0% |
! | GATCCATATATACATATGTA+GGG | - | chr5.4:75250427-75250446 | None:intergenic | 25.0% |
! | TCAATACATACACACATAAT+GGG | - | chr5.4:75250130-75250149 | None:intergenic | 25.0% |
! | TTAGCTACTATGCAAAAATT+GGG | + | chr5.4:75251649-75251668 | MS.gene020804:CDS | 25.0% |
!! | ATACTATCTTTTTACCAAGA+TGG | + | chr5.4:75250741-75250760 | MS.gene020804:intron | 25.0% |
!! | TACAATCTAACTTGCAATAA+TGG | - | chr5.4:75251603-75251622 | None:intergenic | 25.0% |
AAAAATAACCGATGAAAGCA+AGG | + | chr5.4:75251495-75251514 | MS.gene020804:CDS | 30.0% | |
AAATTTCAAGATTCTCTCTC+CGG | - | chr5.4:75250551-75250570 | None:intergenic | 30.0% | |
AATACATACACACATAATGG+GGG | - | chr5.4:75250128-75250147 | None:intergenic | 30.0% | |
ATCACAAAGTAAATCTAGTC+AGG | + | chr5.4:75250316-75250335 | MS.gene020804:intron | 30.0% | |
ATCCCCTACATATGTATATA+TGG | + | chr5.4:75250421-75250440 | MS.gene020804:intron | 30.0% | |
ATTATTAAGGACATTTGAGG+AGG | - | chr5.4:75250298-75250317 | None:intergenic | 30.0% | |
CAATACATACACACATAATG+GGG | - | chr5.4:75250129-75250148 | None:intergenic | 30.0% | |
CAGGATATAAAAGTCAATTG+TGG | + | chr5.4:75250335-75250354 | MS.gene020804:intron | 30.0% | |
GTGATTATTAAGGACATTTG+AGG | - | chr5.4:75250301-75250320 | None:intergenic | 30.0% | |
GTTAGCTACTATGCAAAAAT+TGG | + | chr5.4:75251648-75251667 | MS.gene020804:CDS | 30.0% | |
GTTGTAAATGATAAAGATCG+TGG | + | chr5.4:75250487-75250506 | MS.gene020804:intron | 30.0% | |
TTATTAAGGACATTTGAGGA+GGG | - | chr5.4:75250297-75250316 | None:intergenic | 30.0% | |
TTTCATCAATCTATGCACAT+TGG | - | chr5.4:75251455-75251474 | None:intergenic | 30.0% | |
! | AAAAAGGTACAATTCCATCT+TGG | - | chr5.4:75250758-75250777 | None:intergenic | 30.0% |
! | ATCTAACTTGCAATAATGGT+TGG | - | chr5.4:75251572-75251591 | None:intergenic | 30.0% |
! | TCAAGCTCATGATTTTTCAT+TGG | + | chr5.4:75251795-75251814 | MS.gene020804:intron | 30.0% |
!!! | AGTTTTAGACTTTGCATAGT+TGG | + | chr5.4:75251106-75251125 | MS.gene020804:intron | 30.0% |
AAAAATGACCTCGCATACAT+TGG | - | chr5.4:75251049-75251068 | None:intergenic | 35.0% | |
AAAATGACCTCGCATACATT+GGG | - | chr5.4:75251048-75251067 | None:intergenic | 35.0% | |
AAAATTGCACCCATTTCTGT+TGG | - | chr5.4:75251844-75251863 | None:intergenic | 35.0% | |
AAATGATAAAGATCGTGGAG+AGG | + | chr5.4:75250492-75250511 | MS.gene020804:intron | 35.0% | |
AAATTGCACCCATTTCTGTT+GGG | - | chr5.4:75251843-75251862 | None:intergenic | 35.0% | |
AATCTATGCACATTGGCAAT+GGG | - | chr5.4:75251448-75251467 | None:intergenic | 35.0% | |
ACGTACAACAATCCCAATTA+TGG | - | chr5.4:75251002-75251021 | None:intergenic | 35.0% | |
ATTTCCTTAAGTGATGTGCA+TGG | + | chr5.4:75251986-75252005 | MS.gene020804:intron | 35.0% | |
CATCATTTCCTTGCTTTCAT+CGG | - | chr5.4:75251506-75251525 | None:intergenic | 35.0% | |
CATTGAAATTGAGTCGTGAT+CGG | - | chr5.4:75250915-75250934 | None:intergenic | 35.0% | |
CCATTATTGCAAGTTAGATC+AGG | + | chr5.4:75251573-75251592 | MS.gene020804:CDS | 35.0% | |
TATTAAGGACATTTGAGGAG+GGG | - | chr5.4:75250296-75250315 | None:intergenic | 35.0% | |
TTGGGAAAAGAAAATGTGCA+TGG | - | chr5.4:75251030-75251049 | None:intergenic | 35.0% | |
! | ACAGAAATGGGTGCAATTTT+AGG | + | chr5.4:75251844-75251863 | MS.gene020804:intron | 35.0% |
! | CCTGATCTAACTTGCAATAA+TGG | - | chr5.4:75251576-75251595 | None:intergenic | 35.0% |
! | GATCTTTTGCTTCATGAAAG+AGG | + | chr5.4:75250443-75250462 | MS.gene020804:intron | 35.0% |
! | GATGATGATGATAGAGAACT+TGG | + | chr5.4:75251883-75251902 | MS.gene020804:intron | 35.0% |
!!! | TACATCCAACTTTTTCGTCA+TGG | + | chr5.4:75251703-75251722 | MS.gene020804:CDS | 35.0% |
!!! | TCGGTTATTTTTGCATGTTG+AGG | - | chr5.4:75251487-75251506 | None:intergenic | 35.0% |
ATCGGTGCAACACATCTATA+AGG | - | chr5.4:75250897-75250916 | None:intergenic | 40.0% | |
CAATCTATGCACATTGGCAA+TGG | - | chr5.4:75251449-75251468 | None:intergenic | 40.0% | |
CGATGAAAGCAAGGAAATGA+TGG | + | chr5.4:75251504-75251523 | MS.gene020804:CDS | 40.0% | |
GACGAAAAAGTTGGATGTAG+CGG | - | chr5.4:75251702-75251721 | None:intergenic | 40.0% | |
GATGATGATAGAGAACTTGG+TGG | + | chr5.4:75251886-75251905 | MS.gene020804:intron | 40.0% | |
TTACTTGAACTTGACTCTCC+AGG | - | chr5.4:75249966-75249985 | None:intergenic | 40.0% | |
TTTGCCAACCCAACAGAAAT+GGG | + | chr5.4:75251832-75251851 | MS.gene020804:intron | 40.0% | |
! | AAAAAGTTGGATGTAGCGGA+AGG | - | chr5.4:75251698-75251717 | None:intergenic | 40.0% |
! | CGCTCTTTGTTTGTTTGTCT+CGG | + | chr5.4:75250603-75250622 | MS.gene020804:intron | 40.0% |
! | TTCTTTTCCCAATGTATGCG+AGG | + | chr5.4:75251038-75251057 | MS.gene020804:intron | 40.0% |
! | TTGTGGACAAAAAGAGCATG+AGG | - | chr5.4:75251075-75251094 | None:intergenic | 40.0% |
!! | CATTAGCTTTGTTACTGCTG+AGG | + | chr5.4:75251546-75251565 | MS.gene020804:CDS | 40.0% |
AAAACTCACACACCAGCTTG+TGG | - | chr5.4:75251092-75251111 | None:intergenic | 45.0% | |
ACTGCCATGCACATCACTTA+AGG | - | chr5.4:75251993-75252012 | None:intergenic | 45.0% | |
AGGCAGATCGAGACAAAGTA+AGG | + | chr5.4:75250512-75250531 | MS.gene020804:intron | 45.0% | |
AGTGATGTGCATGGCAGTAT+TGG | + | chr5.4:75251995-75252014 | MS.gene020804:intron | 45.0% | |
ATGCACATTGGCAATGGGAA+AGG | - | chr5.4:75251443-75251462 | None:intergenic | 45.0% | |
GAGCACCATGACGAAAAAGT+TGG | - | chr5.4:75251711-75251730 | None:intergenic | 45.0% | |
GTTTGCCAACCCAACAGAAA+TGG | + | chr5.4:75251831-75251850 | MS.gene020804:intron | 45.0% | |
TCATGAGCTTGAAAAGCCTG+TGG | - | chr5.4:75251787-75251806 | None:intergenic | 45.0% | |
! | ACATACACACATAATGGGGG+TGG | - | chr5.4:75250125-75250144 | None:intergenic | 45.0% |
! | GATGATAGAGAACTTGGTGG+TGG | + | chr5.4:75251889-75251908 | MS.gene020804:intron | 45.0% |
! | GGGTTGGCAAACACAAAGTT+TGG | - | chr5.4:75251823-75251842 | None:intergenic | 45.0% |
! | TGCTCTTTTTGTCCACAAGC+TGG | + | chr5.4:75251077-75251096 | MS.gene020804:intron | 45.0% |
AAGGACATTTGAGGAGGGGA+AGG | - | chr5.4:75250292-75250311 | None:intergenic | 50.0% | |
AGGACATTTGAGGAGGGGAA+GGG | - | chr5.4:75250291-75250310 | None:intergenic | 50.0% | |
AGTGCAACCAGCTAGTTCGA+GGG | + | chr5.4:75251396-75251415 | MS.gene020804:CDS | 50.0% | |
GTAAGGTCCGCATCGAAATC+CGG | + | chr5.4:75250529-75250548 | MS.gene020804:intron | 50.0% | |
TCTCTCTCCGGATTTCGATG+CGG | - | chr5.4:75250539-75250558 | None:intergenic | 50.0% | |
TGAGCTTGAAAAGCCTGTGG+TGG | - | chr5.4:75251784-75251803 | None:intergenic | 50.0% | |
TGCACCCATTTCTGTTGGGT+TGG | - | chr5.4:75251839-75251858 | None:intergenic | 50.0% | |
! | GGTGATGGCAACTCAAGTGA+TGG | + | chr5.4:75251919-75251938 | MS.gene020804:intron | 50.0% |
! | TGAAAAGCCTGTGGTGGTGA+TGG | - | chr5.4:75251778-75251797 | None:intergenic | 50.0% |
!! | GATAGAGAACTTGGTGGTGG+TGG | + | chr5.4:75251892-75251911 | MS.gene020804:intron | 50.0% |
!! | GGGGAAGGGTGTTAACAGAA+CGG | - | chr5.4:75250277-75250296 | None:intergenic | 50.0% |
GAGTGCAACCAGCTAGTTCG+AGG | + | chr5.4:75251395-75251414 | MS.gene020804:CDS | 55.0% | |
TCTTGCACCCTCGAACTAGC+TGG | - | chr5.4:75251406-75251425 | None:intergenic | 55.0% | |
TTTCGTCATGGTGCTCGCGT+AGG | + | chr5.4:75251715-75251734 | MS.gene020804:intron | 55.0% | |
!! | AAAGCCTGTGGTGGTGATGG+TGG | - | chr5.4:75251775-75251794 | None:intergenic | 55.0% |
!! | AGAGAACTTGGTGGTGGTGG+TGG | + | chr5.4:75251895-75251914 | MS.gene020804:intron | 55.0% |
TCCACCACCATCACCACCAC+AGG | + | chr5.4:75251768-75251787 | MS.gene020804:intron | 60.0% | |
!! | GAACTTGGTGGTGGTGGTGG+TGG | + | chr5.4:75251898-75251917 | MS.gene020804:intron | 60.0% |
!! | TGTGGTGGTGATGGTGGTGG+AGG | - | chr5.4:75251769-75251788 | None:intergenic | 60.0% |
GTGGAGGTGGAGGTGGAGGT+GGG | - | chr5.4:75251753-75251772 | None:intergenic | 65.0% | |
TGGAGGTGGAGGTGGAGGTG+GGG | - | chr5.4:75251752-75251771 | None:intergenic | 65.0% | |
!! | GATGGTGGTGGAGGTGGAGG+TGG | - | chr5.4:75251760-75251779 | None:intergenic | 65.0% |
!! | GCCTGTGGTGGTGATGGTGG+TGG | - | chr5.4:75251772-75251791 | None:intergenic | 65.0% |
!! | GGTGATGGTGGTGGAGGTGG+AGG | - | chr5.4:75251763-75251782 | None:intergenic | 65.0% |
!! | GGTGGTGATGGTGGTGGAGG+TGG | - | chr5.4:75251766-75251785 | None:intergenic | 65.0% |
!! | GGTGGTGGTGGTGGTGGTGA+TGG | + | chr5.4:75251904-75251923 | MS.gene020804:intron | 65.0% |
GGAGGTGGAGGTGGAGGTGG+GGG | - | chr5.4:75251751-75251770 | None:intergenic | 70.0% | |
GGTGGAGGTGGAGGTGGAGG+TGG | - | chr5.4:75251754-75251773 | None:intergenic | 70.0% | |
!! | GGTGGTGGAGGTGGAGGTGG+AGG | - | chr5.4:75251757-75251776 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 75249951 | 75252050 | 75249951 | ID=MS.gene020804 |
chr5.4 | mRNA | 75249951 | 75252050 | 75249951 | ID=MS.gene020804.t1;Parent=MS.gene020804 |
chr5.4 | exon | 75249951 | 75249981 | 75249951 | ID=MS.gene020804.t1.exon1;Parent=MS.gene020804.t1 |
chr5.4 | CDS | 75249951 | 75249981 | 75249951 | ID=cds.MS.gene020804.t1;Parent=MS.gene020804.t1 |
chr5.4 | exon | 75251389 | 75251732 | 75251389 | ID=MS.gene020804.t1.exon2;Parent=MS.gene020804.t1 |
chr5.4 | CDS | 75251389 | 75251732 | 75251389 | ID=cds.MS.gene020804.t1;Parent=MS.gene020804.t1 |
chr5.4 | exon | 75252012 | 75252050 | 75252012 | ID=MS.gene020804.t1.exon3;Parent=MS.gene020804.t1 |
chr5.4 | CDS | 75252012 | 75252050 | 75252012 | ID=cds.MS.gene020804.t1;Parent=MS.gene020804.t1 |
Gene Sequence |
Protein sequence |