AlfalfaGEDB | MS.gene020863

M. sativa cultivar XinJiangDaYe / MS.gene020863

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020863.t1	RHN58091.1	97.9	387	8	0	1	387	6	392	4.60E-223	783.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020863.t1	Q9FKH1	44.4	390	195	7	2	384	69	443	3.2e-84	313.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020863.t1	A0A396HZV0	97.9	387	8	0	1	387	6	392	3.3e-223	783.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene020863.t1	TF	SAP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020863.t1	MTR_5g097060	97.674	387	9	0	1	387	94	480	0.0	774

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020863.t1	AT5G35770	43.990	391	197	7	1	384	68	443	2.52e-100	305

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Find 128 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGCTAACATGTGCAC+CGG	0.656474	5.4:-76203341	None:intergenic
AACCCACCAACGACTAGAGC+CGG	0.516179	5.4:-76203569	None:intergenic
AATGGGCCTGGACCAATACC+CGG	0.556865	5.4:+76203481	MS.gene020863:CDS
AATGGTGATGTTGTCAATAA+CGG	0.506851	5.4:+76203529	MS.gene020863:CDS
AATTGCCCGTCGTGCAGGAA+TGG	0.458917	5.4:-76203506	None:intergenic
AATTTGCCGGCTCTAGTCGT+TGG	0.546832	5.4:+76203563	MS.gene020863:CDS
ACAAGTACATGGCAATAGCA+TGG	0.638195	5.4:+76204116	MS.gene020863:CDS
ACATCACGTAATAGAATCTC+TGG	0.371896	5.4:-76203811	None:intergenic
ACCGAATTAGTTGAACCGGT+CGG	0.683053	5.4:+76203712	MS.gene020863:CDS
ACCGACCGGTTCAACTAATT+CGG	0.424968	5.4:-76203713	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTACTACAAATTCTCTTT+CGG	-	chr5.4:76203752-76203771	None:intergenic	30.0%
ATGTTATAACCTATTCTGGT+GGG	+	chr5.4:76204010-76204029	MS.gene020863:CDS	30.0%
CATGGTTAAGAGGTTTATTA+GGG	+	chr5.4:76203971-76203990	MS.gene020863:CDS	30.0%
TATGTTATAACCTATTCTGG+TGG	+	chr5.4:76204009-76204028	MS.gene020863:CDS	30.0%
TATTAGGGTGCATGAATTTA+GGG	+	chr5.4:76203986-76204005	MS.gene020863:CDS	30.0%
TCATGGTTAAGAGGTTTATT+AGG	+	chr5.4:76203970-76203989	MS.gene020863:CDS	30.0%
TGACACTTCTATACGTTTAT+TGG	+	chr5.4:76204173-76204192	MS.gene020863:CDS	30.0%
TTATTAGGGTGCATGAATTT+AGG	+	chr5.4:76203985-76204004	MS.gene020863:CDS	30.0%
ACATCACGTAATAGAATCTC+TGG	-	chr5.4:76203814-76203833	None:intergenic	35.0%
AGGATTCATTGTAGGATCAT+TGG	+	chr5.4:76203846-76203865	MS.gene020863:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	76203049	76204212	76203049	ID=MS.gene020863
chr5.4	mRNA	76203049	76204212	76203049	ID=MS.gene020863.t1;Parent=MS.gene020863
chr5.4	exon	76203049	76204212	76203049	ID=MS.gene020863.t1.exon1;Parent=MS.gene020863.t1
chr5.4	CDS	76203049	76204212	76203049	ID=cds.MS.gene020863.t1;Parent=MS.gene020863.t1

Gene Sequence

>MS.gene020863

ATGCAGGTTTGTTCAACATGGAGAGAAGTGTCACGTTCGGATCTACTGTGGCAGAGGCTCACGAGACGCATCTGGCGCAGAACATATAGATTGAGGGACACGTGGCAGTTAGAGTACATCTACTGGCATCGAACGGCCAGGAACTTTACCACCGGGAGACATGCTTTAGTGGTCCCACAATATGATCCAGGAGATCACCACCAAAACCTCATCTGCCGCTGCCTCACTCTCTCCGACACCCACCTCGCCTGCGGCTTCGTCGACGGCAGTGTCCGACTCTTCGATCTCCACACCGGTGCACATGTTAGCACATTTTGGTCCAACCATGGTCTTCTATTCGGCCCGTTTTCACAATCCGTTTCGGGAATTGTAATTGGAAGCTCTACCCTCGCCTTCGCGAGATTAGATGGAGATGTCTACATTGCTATTATTAATGGGCCTGGACCAATACCCGGGCCCATTCCTGCACGACGGGCAATTAATGGTGATGTTGTCAATAACGGAGTATTAGTAGAATTTGCCGGCTCTAGTCGTTGGTGGGTTGGTTTATATGTTGGCCACGCGGGCGGGGCTTTTCAAATATGGGACGCGCACACGGAACAGCGCGTGTTTGTTGGCGGTTCATTAACCGATCCGGAAACGGTTCAAGGATGGCATATGTTAACCGAATTAGTTGAACCGGTCGGTCGAGTCCGAGTCACCGAAAGAGAATTTGTAGTAGCTTGCACAAGTACAAGATTGGTTTGTTTCAACTTAAGAAACCCAGAGATTCTATTACGTGATGTAGTGTCCATAACAGGATTCATTGTAGGATCATTGGATGTTAGCCATGAGGTTTTTGTTGTGGTGGAAAGAAGTGGTGTTGGAACTGTTCGGCGCGTGAATAATTTCGAGCGCGTGAGTAGGTTTAGATTAAGGGCTTCATGGTTAAGAGGTTTATTAGGGTGCATGAATTTAGGGTATGTTATAACCTATTCTGGTGGGTCTGGTTTGTTAAGAGTGTGGGACATACATGAACCTGCGGCGCGATTGTGTATCACGCTCCCAGTTAGAGATGATGGAGAAGGACAAGTACATGGCAATAGCATGGTTGCTAATCAAACTCACGTGGCTATCTCATTTAATGACACTTCTATACGTTTATTGGATTTTAGTGTACAGTAA

Protein sequence

>MS.gene020863.t1

MQVCSTWREVSRSDLLWQRLTRRIWRRTYRLRDTWQLEYIYWHRTARNFTTGRHALVVPQYDPGDHHQNLICRCLTLSDTHLACGFVDGSVRLFDLHTGAHVSTFWSNHGLLFGPFSQSVSGIVIGSSTLAFARLDGDVYIAIINGPGPIPGPIPARRAINGDVVNNGVLVEFAGSSRWWVGLYVGHAGGAFQIWDAHTEQRVFVGGSLTDPETVQGWHMLTELVEPVGRVRVTEREFVVACTSTRLVCFNLRNPEILLRDVVSITGFIVGSLDVSHEVFVVVERSGVGTVRRVNNFERVSRFRLRASWLRGLLGCMNLGYVITYSGGSGLLRVWDIHEPAARLCITLPVRDDGEGQVHGNSMVANQTHVAISFNDTSIRLLDFSVQ