AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020910.t1 MTR_7g005280 70.404 223 29 7 3 190 36 256 1.19e-92 271
MS.gene020910.t1 MTR_7g070140 65.854 164 15 2 27 190 12 134 2.10e-67 202
MS.gene020910.t1 MTR_8g099750 69.159 107 30 2 3 108 35 139 1.74e-48 157
MS.gene020910.t1 MTR_3g098810 65.138 109 37 1 3 110 35 143 6.95e-46 149
MS.gene020910.t1 MTR_3g098810 65.138 109 37 1 3 110 35 143 3.92e-45 149
MS.gene020910.t1 MTR_7g070150 78.125 96 17 3 70 165 1 92 1.38e-41 135
MS.gene020910.t1 MTR_5g041940 52.740 146 50 4 6 143 27 161 1.08e-40 139
MS.gene020910.t1 MTR_7g085220 57.391 115 41 2 3 109 29 143 2.34e-40 140
MS.gene020910.t1 MTR_4g081870 62.963 108 33 2 8 112 35 138 3.10e-40 137
MS.gene020910.t1 MTR_4g089135 59.130 115 42 2 3 114 36 148 6.30e-40 139
MS.gene020910.t1 MTR_2g080010 59.130 115 42 2 3 114 36 148 1.01e-39 138
MS.gene020910.t1 MTR_2157s0010 56.250 112 45 2 3 111 29 139 3.51e-38 132
MS.gene020910.t1 MTR_3g064580 59.048 105 34 2 9 108 33 133 1.23e-36 134
MS.gene020910.t1 MTR_2g093810 56.250 112 44 2 3 111 35 144 2.00e-36 129
MS.gene020910.t1 MTR_1g008740 59.223 103 37 2 14 113 46 146 5.95e-36 128
MS.gene020910.t1 MTR_2g064090 54.400 125 42 5 3 120 27 143 6.29e-36 128
MS.gene020910.t1 MTR_1g008740 59.223 103 37 2 14 113 60 160 6.52e-36 129
MS.gene020910.t1 MTR_7g085260 55.963 109 45 1 3 108 38 146 1.12e-35 128
MS.gene020910.t1 MTR_7g100990 55.357 112 45 2 3 111 32 141 1.13e-35 127
MS.gene020910.t1 MTR_5g076850 55.752 113 37 3 3 108 27 133 1.30e-35 131
MS.gene020910.t1 MTR_3g088110 57.273 110 39 2 3 109 28 132 1.01e-34 124
MS.gene020910.t1 MTR_8g076110 50.420 119 49 3 3 115 27 141 1.28e-34 124
MS.gene020910.t1 MTR_3g109340 57.000 100 38 2 14 110 54 151 1.35e-34 125
MS.gene020910.t1 MTR_3g109340 57.000 100 38 2 14 110 54 151 1.36e-34 125
MS.gene020910.t1 MTR_2g078700 54.955 111 45 2 1 108 42 150 1.85e-34 125
MS.gene020910.t1 MTR_6g084430 56.863 102 37 2 14 112 37 134 2.61e-34 124
MS.gene020910.t1 MTR_3g435150 55.046 109 42 2 3 108 37 141 4.94e-34 122
MS.gene020910.t1 MTR_3g070030 52.459 122 46 4 1 115 38 154 5.19e-34 123
MS.gene020910.t1 MTR_3g116070 56.311 103 40 3 16 115 58 158 7.56e-34 123
MS.gene020910.t1 MTR_4g035590 57.843 102 33 2 13 108 39 136 9.60e-34 123
MS.gene020910.t1 MTR_4g108760 52.632 114 47 2 3 113 38 147 1.23e-33 122
MS.gene020910.t1 MTR_7g011130 55.882 102 36 3 11 108 48 144 1.30e-33 122
MS.gene020910.t1 MTR_6g032770 52.252 111 48 2 1 108 37 145 1.54e-33 122
MS.gene020910.t1 MTR_6g012670 51.754 114 48 3 3 113 41 150 4.97e-33 120
MS.gene020910.t1 MTR_5g021710 49.580 119 50 3 3 115 29 143 6.61e-33 120
MS.gene020910.t1 MTR_1g096430 47.059 119 53 2 3 115 28 142 7.99e-33 120
MS.gene020910.t1 MTR_2g079990 53.913 115 46 2 3 114 37 147 1.02e-32 120
MS.gene020910.t1 MTR_2g079990 53.913 115 46 2 3 114 37 147 1.18e-32 120
MS.gene020910.t1 MTR_7g011120 52.679 112 44 3 1 108 27 133 1.59e-32 119
MS.gene020910.t1 MTR_8g059170 43.548 186 81 6 7 184 41 210 2.14e-32 119
MS.gene020910.t1 MTR_6g477900 49.550 111 47 2 3 108 27 133 3.36e-32 116
MS.gene020910.t1 MTR_8g094580 53.571 112 42 3 3 110 28 133 5.14e-32 117
MS.gene020910.t1 MTR_2g062730 54.902 102 37 2 13 108 41 139 7.06e-32 117
MS.gene020910.t1 MTR_4g036030 50.877 114 46 3 3 110 28 137 8.65e-32 117
MS.gene020910.t1 MTR_5g012080 48.696 115 50 2 3 111 28 139 1.44e-31 117
MS.gene020910.t1 MTR_4g101680 49.565 115 48 2 3 111 28 138 1.54e-31 117
MS.gene020910.t1 MTR_3g093050 52.941 102 39 2 13 109 53 150 4.23e-31 118
MS.gene020910.t1 MTR_3g093050 52.941 102 39 2 13 109 53 150 4.33e-31 119
MS.gene020910.t1 MTR_2g068880 48.148 108 52 1 8 111 48 155 4.59e-31 115
MS.gene020910.t1 MTR_2g068920 48.148 108 52 1 8 111 47 154 4.70e-31 114
MS.gene020910.t1 MTR_5g069030 54.902 102 37 2 13 109 56 153 5.06e-31 118
MS.gene020910.t1 MTR_3g093040 50.000 104 43 2 11 109 137 236 1.14e-30 114
MS.gene020910.t1 MTR_5g090970 50.926 108 50 2 3 108 39 145 1.15e-30 114
MS.gene020910.t1 MTR_5g090970 50.459 109 50 2 3 108 39 146 3.30e-30 112
MS.gene020910.t1 MTR_8g024480 50.000 108 44 2 13 114 46 149 3.46e-30 114
MS.gene020910.t1 MTR_3g070040 50.000 108 50 1 1 108 27 130 3.84e-30 113
MS.gene020910.t1 MTR_4g098630 47.321 112 53 2 3 109 27 137 3.95e-30 112
MS.gene020910.t1 MTR_5g014300 46.491 114 53 2 3 108 27 140 6.42e-30 112
MS.gene020910.t1 MTR_1g069805 51.429 105 46 2 14 115 42 144 7.31e-30 111
MS.gene020910.t1 MTR_7g097090 50.909 110 48 3 9 115 38 144 8.43e-30 111
MS.gene020910.t1 MTR_3g096920 55.446 101 37 2 13 110 38 133 1.10e-29 110
MS.gene020910.t1 MTR_3g096920 55.882 102 35 3 13 110 38 133 1.78e-29 111
MS.gene020910.t1 MTR_2g064470 45.946 111 53 2 13 120 40 146 1.90e-29 110
MS.gene020910.t1 MTR_2g086880 42.553 141 66 4 11 146 47 177 1.91e-29 113
MS.gene020910.t1 MTR_2g086880 42.553 141 66 4 11 146 47 177 2.68e-29 113
MS.gene020910.t1 MTR_8g063550 52.427 103 36 3 13 108 37 133 3.60e-28 108
MS.gene020910.t1 MTR_8g063550 52.427 103 36 3 13 108 37 133 4.57e-28 108
MS.gene020910.t1 MTR_5g040420 46.847 111 54 2 3 110 35 143 5.08e-28 108
MS.gene020910.t1 MTR_6g011860 47.573 103 48 2 9 108 42 141 5.45e-28 108
MS.gene020910.t1 MTR_3g096140 47.788 113 46 3 3 108 28 134 6.06e-28 106
MS.gene020910.t1 MTR_8g063550 52.427 103 36 3 13 108 37 133 8.58e-28 108
MS.gene020910.t1 MTR_8g467490 39.726 146 80 3 3 142 35 178 1.23e-27 107
MS.gene020910.t1 MTR_3g096140 47.788 113 46 3 3 108 7 113 2.18e-27 105
MS.gene020910.t1 MTR_3g096140 47.788 113 46 3 3 108 28 134 2.96e-27 105
MS.gene020910.t1 MTR_1g097300 47.788 113 46 3 3 108 40 146 4.69e-27 107
MS.gene020910.t1 MTR_0036s0150 50.515 97 39 2 17 108 41 133 1.91e-26 105
MS.gene020910.t1 MTR_1g090720 50.459 109 45 2 3 106 63 167 2.60e-26 104
MS.gene020910.t1 MTR_8g023840 46.296 108 50 3 12 114 42 146 2.80e-26 103
MS.gene020910.t1 MTR_1g090723 44.248 113 48 3 1 108 34 136 7.35e-26 103
MS.gene020910.t1 MTR_1g090723 44.248 113 48 3 1 108 34 136 7.48e-26 103
MS.gene020910.t1 MTR_1g090723 44.248 113 48 3 1 108 34 136 7.78e-26 103
MS.gene020910.t1 MTR_8g093580 50.485 103 38 3 13 108 37 133 1.31e-25 102
MS.gene020910.t1 MTR_4g134460 51.515 99 42 2 13 108 85 180 1.82e-25 102
MS.gene020910.t1 MTR_4g075980 45.631 103 52 2 9 108 42 143 8.08e-25 98.2
MS.gene020910.t1 MTR_8g094580 56.962 79 29 1 32 110 6 79 9.82e-25 96.7
MS.gene020910.t1 MTR_2g086690 41.739 115 51 4 13 115 37 147 3.49e-21 87.8
MS.gene020910.t1 MTR_8g023900 44.000 100 48 3 12 106 224 320 1.51e-20 88.6
MS.gene020910.t1 MTR_8g023900 40.000 100 52 3 12 106 43 139 3.84e-16 75.9
MS.gene020910.t1 MTR_8g023860 39.806 103 54 3 13 110 44 143 2.26e-20 87.8
MS.gene020910.t1 MTR_4g052620 41.176 102 50 3 13 107 37 135 3.72e-20 85.1
MS.gene020910.t1 MTR_8g023930 42.000 100 50 3 12 106 55 151 9.42e-20 86.3
MS.gene020910.t1 MTR_4g094302 38.462 104 53 3 7 108 36 130 1.01e-19 81.6
MS.gene020910.t1 MTR_4g094302 38.462 104 53 3 7 108 36 130 2.65e-19 81.6
MS.gene020910.t1 MTR_7g105170 36.538 104 54 3 12 107 36 135 1.48e-15 72.8
MS.gene020910.t1 MTR_8g023880 33.121 157 76 6 12 149 38 184 6.77e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020910.t1 AT5G13180 76.415 106 23 1 3 108 35 138 9.37e-59 184
MS.gene020910.t1 AT2G33480 66.942 121 36 1 3 123 36 152 1.04e-56 180
MS.gene020910.t1 AT2G33480 70.175 114 30 1 3 116 36 145 1.02e-55 177
MS.gene020910.t1 AT3G04070 60.000 115 42 2 3 113 31 145 4.02e-39 137
MS.gene020910.t1 AT3G04070 60.000 115 42 2 3 113 31 145 5.33e-39 137
MS.gene020910.t1 AT2G33480 66.667 90 26 1 27 116 3 88 5.56e-39 133
MS.gene020910.t1 AT3G15510 58.261 115 43 2 3 114 38 150 3.40e-38 135
MS.gene020910.t1 AT1G69490 59.821 112 38 2 3 111 30 137 4.89e-38 132
MS.gene020910.t1 AT1G61110 62.500 112 32 3 3 109 37 143 1.65e-37 132
MS.gene020910.t1 AT2G24430 62.136 103 34 2 14 113 48 148 6.05e-37 130
MS.gene020910.t1 AT2G24430 62.136 103 34 2 14 113 48 148 6.05e-37 130
MS.gene020910.t1 AT1G33060 49.242 132 51 3 3 122 45 172 9.34e-37 135
MS.gene020910.t1 AT1G33060 49.242 132 51 3 3 122 45 172 9.54e-37 134
MS.gene020910.t1 AT1G65910 54.955 111 41 2 3 108 27 133 1.53e-36 134
MS.gene020910.t1 AT1G77450 58.559 111 36 3 3 109 31 135 1.72e-36 127
MS.gene020910.t1 AT5G39610 53.913 115 46 2 2 113 40 150 5.16e-36 127
MS.gene020910.t1 AT5G17260 55.556 108 39 2 13 115 37 140 9.70e-36 130
MS.gene020910.t1 AT1G52880 51.007 149 62 3 3 143 38 183 1.22e-35 127
MS.gene020910.t1 AT3G03200 50.000 118 50 2 3 115 27 140 3.45e-35 129
MS.gene020910.t1 AT5G07680 52.941 119 46 3 3 115 24 138 5.36e-35 125
MS.gene020910.t1 AT5G07680 52.941 119 46 3 3 115 38 152 6.52e-35 125
MS.gene020910.t1 AT1G33280 50.000 128 54 2 13 134 39 162 8.49e-35 124
MS.gene020910.t1 AT4G35580 56.863 102 35 2 13 109 40 137 8.63e-35 128
MS.gene020910.t1 AT5G61430 54.622 119 44 4 3 115 37 151 9.64e-35 125
MS.gene020910.t1 AT5G53950 51.220 123 55 2 1 120 36 156 1.05e-34 125
MS.gene020910.t1 AT4G35580 56.863 102 35 2 13 109 40 137 1.08e-34 128
MS.gene020910.t1 AT4G35580 56.863 102 35 2 13 109 40 137 1.15e-34 128
MS.gene020910.t1 AT3G29035 55.455 110 42 2 2 108 44 149 1.34e-34 124
MS.gene020910.t1 AT1G76420 52.586 116 48 3 3 114 43 155 2.35e-34 124
MS.gene020910.t1 AT5G18270 53.509 114 47 2 3 113 42 152 3.18e-34 124
MS.gene020910.t1 AT4G10350 44.134 179 60 7 13 182 40 187 3.76e-34 124
MS.gene020910.t1 AT5G18270 53.509 114 47 2 3 113 42 152 5.40e-34 123
MS.gene020910.t1 AT3G04060 53.509 114 47 2 3 113 41 151 6.83e-34 123
MS.gene020910.t1 AT5G62380 50.847 118 45 4 6 115 30 142 1.72e-33 122
MS.gene020910.t1 AT5G62380 50.847 118 45 4 6 115 30 142 1.72e-33 122
MS.gene020910.t1 AT1G54330 53.719 121 43 3 3 116 27 141 1.72e-33 121
MS.gene020910.t1 AT3G15170 48.780 123 58 2 1 120 39 159 1.92e-33 121
MS.gene020910.t1 AT3G17730 47.154 123 56 2 3 120 27 145 3.19e-33 119
MS.gene020910.t1 AT3G18400 51.327 113 48 2 3 112 26 134 5.32e-33 120
MS.gene020910.t1 AT4G36160 48.739 119 51 2 3 115 35 149 6.03e-33 121
MS.gene020910.t1 AT4G36160 48.739 119 51 2 3 115 31 145 6.76e-33 121
MS.gene020910.t1 AT4G36160 48.739 119 51 2 3 115 31 145 6.76e-33 121
MS.gene020910.t1 AT4G27410 53.211 109 44 2 3 108 35 139 1.78e-32 118
MS.gene020910.t1 AT2G18060 48.739 119 51 3 3 115 30 144 2.31e-32 119
MS.gene020910.t1 AT2G18060 48.739 119 51 3 3 115 30 144 2.31e-32 119
MS.gene020910.t1 AT1G56010 49.123 114 51 2 10 120 48 157 6.79e-32 117
MS.gene020910.t1 AT1G71930 45.833 120 55 2 3 116 30 145 7.39e-32 117
MS.gene020910.t1 AT1G71930 45.833 120 55 2 3 116 30 145 7.39e-32 117
MS.gene020910.t1 AT1G01720 54.545 110 42 2 3 109 28 132 7.88e-32 116
MS.gene020910.t1 AT4G17980 47.321 112 52 2 3 109 27 136 8.16e-32 115
MS.gene020910.t1 AT5G66300 50.000 118 49 3 3 114 33 146 1.08e-31 116
MS.gene020910.t1 AT4G17980 47.321 112 52 2 3 109 27 136 1.25e-31 116
MS.gene020910.t1 AT5G46590 47.321 112 51 2 3 109 27 135 1.43e-31 115
MS.gene020910.t1 AT5G46590 47.321 112 51 2 3 109 27 135 1.50e-31 115
MS.gene020910.t1 AT1G79580 52.586 116 44 3 3 111 38 149 1.92e-31 117
MS.gene020910.t1 AT1G79580 52.586 116 44 3 3 111 38 149 1.92e-31 117
MS.gene020910.t1 AT1G79580 52.586 116 44 3 3 111 38 149 1.92e-31 117
MS.gene020910.t1 AT1G79580 52.586 116 44 3 3 111 38 149 1.92e-31 117
MS.gene020910.t1 AT1G79580 52.586 116 44 3 3 111 38 149 1.92e-31 117
MS.gene020910.t1 AT3G61910 48.696 115 49 3 3 111 32 142 2.21e-31 116
MS.gene020910.t1 AT1G62700 52.174 115 45 3 3 111 28 138 2.22e-31 117
MS.gene020910.t1 AT1G62700 52.174 115 45 3 3 111 28 138 2.22e-31 117
MS.gene020910.t1 AT1G52890 53.211 109 44 2 3 108 35 139 4.01e-31 115
MS.gene020910.t1 AT3G10500 46.212 132 55 3 3 122 30 157 5.26e-31 118
MS.gene020910.t1 AT1G12260 50.000 114 47 3 3 110 28 137 6.60e-31 115
MS.gene020910.t1 AT2G46770 50.893 112 45 3 3 108 37 144 7.23e-31 115
MS.gene020910.t1 AT1G12260 50.000 114 47 3 3 110 28 137 1.07e-30 115
MS.gene020910.t1 AT3G15500 56.566 99 36 2 13 108 45 139 1.25e-30 114
MS.gene020910.t1 AT5G24590 48.361 122 48 4 13 122 44 162 1.43e-30 116
MS.gene020910.t1 AT3G10480 51.786 112 45 2 3 109 48 155 1.79e-30 115
MS.gene020910.t1 AT3G10480 51.786 112 45 2 3 109 48 155 1.82e-30 115
MS.gene020910.t1 AT1G32770 49.107 112 47 2 3 108 37 144 2.04e-30 114
MS.gene020910.t1 AT5G08790 52.252 111 43 3 3 109 28 132 2.37e-30 112
MS.gene020910.t1 AT5G63790 50.893 112 45 3 3 110 71 176 2.88e-30 113
MS.gene020910.t1 AT3G10490 50.893 112 46 2 3 109 48 155 3.34e-30 111
MS.gene020910.t1 AT3G12977 50.926 108 45 3 4 108 41 143 3.60e-30 112
MS.gene020910.t1 AT5G63790 52.336 107 41 3 8 110 86 186 3.88e-30 112
MS.gene020910.t1 AT5G04410 50.893 112 46 2 3 109 30 137 4.40e-30 115
MS.gene020910.t1 AT2G17040 49.074 108 51 2 11 115 35 141 5.75e-30 111
MS.gene020910.t1 AT4G27410 46.032 126 44 2 3 108 35 156 7.39e-30 112
MS.gene020910.t1 AT4G10350 43.506 154 53 5 32 182 18 140 1.08e-29 111
MS.gene020910.t1 AT1G32510 50.000 108 46 2 9 108 33 140 4.74e-29 109
MS.gene020910.t1 AT3G10490 50.893 112 46 2 3 109 48 155 6.40e-29 111
MS.gene020910.t1 AT4G28530 53.061 98 41 2 14 108 58 153 1.17e-28 109
MS.gene020910.t1 AT5G39820 47.748 111 53 2 3 110 41 149 1.44e-28 108
MS.gene020910.t1 AT5G61430 57.471 87 30 2 32 115 6 88 2.58e-28 107
MS.gene020910.t1 AT3G49530 38.251 183 90 6 14 176 45 224 2.95e-28 109
MS.gene020910.t1 AT3G12910 46.491 114 49 3 13 115 54 166 3.29e-28 107
MS.gene020910.t1 AT3G49530 49.091 110 45 4 14 115 45 151 3.43e-28 109
MS.gene020910.t1 AT2G02450 53.465 101 41 3 11 108 80 177 1.43e-27 107
MS.gene020910.t1 AT2G02450 53.465 101 41 3 11 108 80 177 1.49e-27 107
MS.gene020910.t1 AT2G27300 45.045 111 53 2 11 117 43 149 3.01e-27 105
MS.gene020910.t1 AT1G56010 55.294 85 34 1 36 120 10 90 4.23e-27 103
MS.gene020910.t1 AT1G34190 48.571 105 45 2 9 108 43 143 5.74e-27 107
MS.gene020910.t1 AT3G44290 43.243 111 55 2 11 117 43 149 9.53e-27 102
MS.gene020910.t1 AT1G34180 46.847 111 50 2 3 108 37 143 1.96e-26 104
MS.gene020910.t1 AT1G26870 45.370 108 54 2 3 107 37 142 3.13e-26 103
MS.gene020910.t1 AT3G10480 40.000 145 45 2 3 109 48 188 3.20e-26 104
MS.gene020910.t1 AT1G34180 46.847 111 50 2 3 108 37 143 3.31e-26 104
MS.gene020910.t1 AT3G44290 43.243 111 55 2 11 117 43 149 4.57e-26 102
MS.gene020910.t1 AT5G22290 45.918 98 45 2 13 106 52 145 1.10e-25 101
MS.gene020910.t1 AT1G34180 42.276 123 50 2 3 108 37 155 2.02e-25 102
MS.gene020910.t1 AT1G34180 42.276 123 50 2 3 108 37 155 2.56e-25 102
MS.gene020910.t1 AT2G43000 44.643 112 55 2 3 111 39 146 3.02e-25 99.0
MS.gene020910.t1 AT3G12977 56.579 76 29 1 33 108 19 90 3.64e-25 97.8
MS.gene020910.t1 AT5G09330 46.903 113 47 3 3 108 27 133 4.78e-24 98.6
MS.gene020910.t1 AT5G09330 46.903 113 47 3 3 108 27 133 4.78e-24 98.6
MS.gene020910.t1 AT5G09330 46.903 113 47 3 3 108 27 133 4.78e-24 98.6
MS.gene020910.t1 AT5G09330 46.903 113 47 3 3 108 27 133 4.78e-24 98.6
MS.gene020910.t1 AT5G09330 46.903 113 47 3 3 108 27 133 4.78e-24 98.6
MS.gene020910.t1 AT5G64060 43.243 111 54 2 3 108 27 133 6.80e-24 97.1
MS.gene020910.t1 AT1G02230 44.248 113 54 4 13 120 36 144 1.08e-22 93.6
MS.gene020910.t1 AT1G02250 42.982 114 56 3 13 121 36 145 4.53e-22 92.0
MS.gene020910.t1 AT5G04395 36.296 135 69 2 3 121 49 182 4.68e-21 85.9
MS.gene020910.t1 AT1G32870 48.000 100 41 3 14 108 78 171 1.08e-20 89.4
MS.gene020910.t1 AT1G32870 48.000 100 41 3 14 108 42 135 1.16e-20 89.0
MS.gene020910.t1 AT1G32870 48.000 100 41 3 14 108 42 135 1.24e-20 89.0
MS.gene020910.t1 AT4G01540 50.649 77 37 1 34 110 63 138 2.07e-19 85.1
MS.gene020910.t1 AT4G01540 50.649 77 37 1 34 110 63 138 2.44e-19 85.1
MS.gene020910.t1 AT4G01540 50.649 77 37 1 34 110 63 138 2.65e-19 84.7
MS.gene020910.t1 AT4G01540 50.649 77 37 1 34 110 63 138 2.75e-19 84.7
MS.gene020910.t1 AT4G01520 48.052 77 39 1 34 110 63 138 9.61e-19 82.0
MS.gene020910.t1 AT4G01550 41.584 101 53 2 14 109 37 136 2.15e-18 82.4
MS.gene020910.t1 AT5G14000 38.938 113 62 3 1 110 34 142 4.62e-18 77.4
MS.gene020910.t1 AT3G04420 43.434 99 47 3 13 106 36 130 1.26e-17 79.0
MS.gene020910.t1 AT3G44350 39.091 110 55 3 12 113 36 141 1.62e-17 76.3
MS.gene020910.t1 AT5G14000 38.938 113 62 3 1 110 34 142 1.78e-17 77.0
MS.gene020910.t1 AT3G04420 43.434 99 47 3 13 106 36 130 2.14e-17 79.0
MS.gene020910.t1 AT3G10490 60.345 58 19 1 52 109 2 55 2.57e-17 79.0
MS.gene020910.t1 AT3G10490 60.345 58 19 1 52 109 2 55 2.57e-17 79.0
MS.gene020910.t1 AT5G50820 37.624 101 59 1 14 114 48 144 2.74e-17 76.3
MS.gene020910.t1 AT3G44350 39.091 110 55 3 12 113 36 141 6.48e-17 76.3
MS.gene020910.t1 AT5G64530 39.423 104 48 4 7 108 28 118 6.51e-17 74.3
MS.gene020910.t1 AT2G18060 52.542 59 24 1 57 115 2 56 8.32e-17 76.6
MS.gene020910.t1 AT5G64530 39.423 104 48 4 7 108 28 118 1.97e-16 73.9
MS.gene020910.t1 AT2G43000 47.887 71 33 1 41 111 2 68 3.74e-16 73.6
MS.gene020910.t1 AT5G22380 39.216 102 50 3 13 106 38 135 8.26e-16 73.2
MS.gene020910.t1 AT1G02220 37.190 121 57 5 14 126 37 146 1.60e-15 73.9
MS.gene020910.t1 AT5G22290 57.143 49 17 1 58 106 2 46 9.92e-14 67.8
MS.gene020910.t1 AT1G01010 36.522 115 60 4 14 117 37 149 1.41e-13 68.6
MS.gene020910.t1 AT4G28530 42.683 82 42 2 14 92 58 137 6.63e-13 66.2

Find 44 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCACTCCCATCCTCTTT+TGG 0.255864 5.4:+76841660 MS.gene020910:CDS
TCGGTTCCCGTTTGGATACT+TGG 0.293238 5.4:-76841167 None:intergenic
TGTTGTTCTATTAGGTGATA+TGG 0.301557 5.4:+76841111 MS.gene020910:intron
CTCCTCAATCACAAATGAAT+TGG 0.322510 5.4:+76841611 MS.gene020910:CDS
GAGCTACAAACTCTGGTTAC+TGG 0.345872 5.4:+76841197 MS.gene020910:CDS
CTGTTAGATCGGTTCCCGTT+TGG 0.351967 5.4:-76841175 None:intergenic
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 5.4:+76840895 MS.gene020910:CDS
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 5.4:+76840896 MS.gene020910:CDS
ATCCAATTCATTTGTGATTG+AGG 0.401398 5.4:-76841613 None:intergenic
TTACTGGAAGGCAACTGGTT+TGG 0.413426 5.4:+76841213 MS.gene020910:CDS
AAGACGACTCGTGAAGTTGT+TGG 0.418647 5.4:+76841259 MS.gene020910:CDS
TCTGGTTACTGGAAGGCAAC+TGG 0.438388 5.4:+76841208 MS.gene020910:CDS
CTCAGCTTCAAGTTCAAAAG+TGG 0.464412 5.4:+76841536 MS.gene020910:CDS
GACTTGCAAAGATCAACTTC+AGG 0.465462 5.4:-76840885 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 5.4:-76840877 None:intergenic
TTCCTCTCACTCCAACCCCT+TGG 0.472031 5.4:+76841366 MS.gene020910:CDS
AAAGGGAAAGAGAAGACCTT+AGG 0.496728 5.4:-76840846 None:intergenic
AAAGAAGCCAAGTATCCAAA+CGG 0.506694 5.4:+76841160 MS.gene020910:CDS
GAATGATGGAAGCAGGTAAA+GGG 0.510410 5.4:-76840863 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 5.4:-76841360 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 5.4:-76841669 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 5.4:-76841673 None:intergenic
AAATTCAGAGAAAGAAAGAA+AGG 0.524155 5.4:-76841409 None:intergenic
AGTTTGTAGCTCTGTTAGAT+CGG 0.532621 5.4:-76841186 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 5.4:-76840864 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 5.4:-76840870 None:intergenic
AACCAAGGGGTTGGAGTGAG+AGG 0.542924 5.4:-76841368 None:intergenic
AGAAAGACTAACCAAGGGGT+TGG 0.543061 5.4:-76841377 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 5.4:+76841320 MS.gene020910:CDS
AAGAAGCCAAGTATCCAAAC+GGG 0.550135 5.4:+76841161 MS.gene020910:CDS
TCTAACAGAGCTACAAACTC+TGG 0.560803 5.4:+76841190 MS.gene020910:CDS
AAGCATTTCCAAAAGAGGAT+GGG 0.563423 5.4:-76841668 None:intergenic
CAATTCATTTGTGATTGAGG+AGG 0.568174 5.4:-76841610 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 5.4:+76840906 MS.gene020910:CDS
AAAGAAAGAAAGACTAACCA+AGG 0.578050 5.4:-76841383 None:intergenic
TACAGAGGCAAACCACCTCA+TGG 0.581454 5.4:+76841304 MS.gene020910:CDS
TCAGTTCTTGAACCATGAGG+TGG 0.615010 5.4:-76841316 None:intergenic
AACATACCAGGTAAATCCCA+AGG 0.627371 5.4:-76840912 None:intergenic
TACAAACTCTGGTTACTGGA+AGG 0.635081 5.4:+76841201 MS.gene020910:CDS
AAGAAAGAAAGACTAACCAA+GGG 0.638759 5.4:-76841382 None:intergenic
ATTTCTGAAGAGTAGAGATG+AGG 0.660421 5.4:+76841497 MS.gene020910:intron
TAGGTGATATGGAACAAGAG+AGG 0.694959 5.4:+76841122 MS.gene020910:intron
CAATCAGTTCTTGAACCATG+AGG 0.707588 5.4:-76841319 None:intergenic
AGAAAGAAAGACTAACCAAG+GGG 0.737031 5.4:-76841381 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATATATGAATGAAT+TGG + chr5.4:76841439-76841458 MS.gene020910:intron 10.0%
!! TATTAATATATGAATGAATT+GGG + chr5.4:76841440-76841459 MS.gene020910:intron 10.0%
!! AGAAAAGAAAAGAAAAGAAA+AGG - chr5.4:76840941-76840960 None:intergenic 20.0%
! AAATTCAGAGAAAGAAAGAA+AGG - chr5.4:76841412-76841431 None:intergenic 25.0%
AAAGAAAGAAAGACTAACCA+AGG - chr5.4:76841386-76841405 None:intergenic 30.0%
AAGAAAGAAAGACTAACCAA+GGG - chr5.4:76841385-76841404 None:intergenic 30.0%
ATCCAATTCATTTGTGATTG+AGG - chr5.4:76841616-76841635 None:intergenic 30.0%
TAGTAGAAGTTATCATGTTC+TGG - chr5.4:76841052-76841071 None:intergenic 30.0%
TGTTGTTCTATTAGGTGATA+TGG + chr5.4:76841111-76841130 MS.gene020910:intron 30.0%
! GGTTTTGCAGAATGAAAATT+GGG + chr5.4:76841461-76841480 MS.gene020910:intron 30.0%
! TGAGTATGTGTTGTTCTATT+AGG + chr5.4:76841103-76841122 MS.gene020910:intron 30.0%
! TGTTCAATATTTGAAGCCTA+AGG + chr5.4:76840830-76840849 MS.gene020910:intron 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + chr5.4:76841289-76841308 MS.gene020910:CDS 30.0%
AAAGAAGCCAAGTATCCAAA+CGG + chr5.4:76841160-76841179 MS.gene020910:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG - chr5.4:76840880-76840899 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG - chr5.4:76841671-76841690 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG - chr5.4:76840813-76840832 None:intergenic 35.0%
AGAAAGAAAGACTAACCAAG+GGG - chr5.4:76841384-76841403 None:intergenic 35.0%
CAATTCATTTGTGATTGAGG+AGG - chr5.4:76841613-76841632 None:intergenic 35.0%
CGCAGAGAAGAAGAAAAATA+CGG + chr5.4:76841578-76841597 MS.gene020910:CDS 35.0%
CTCCTCAATCACAAATGAAT+TGG + chr5.4:76841611-76841630 MS.gene020910:CDS 35.0%
CTTCATCTGTTGGATGAAAA+CGG - chr5.4:76840803-76840822 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG - chr5.4:76841672-76841691 None:intergenic 35.0%
! AAGAAAAGGTACAACATACC+AGG - chr5.4:76840927-76840946 None:intergenic 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG - chr5.4:76841189-76841208 None:intergenic 35.0%
! ATTTCTGAAGAGTAGAGATG+AGG + chr5.4:76841497-76841516 MS.gene020910:intron 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG + chr5.4:76841460-76841479 MS.gene020910:intron 35.0%
AAAGGGAAAGAGAAGACCTT+AGG - chr5.4:76840849-76840868 None:intergenic 40.0%
AACATACCAGGTAAATCCCA+AGG - chr5.4:76840915-76840934 None:intergenic 40.0%
AAGAAGCCAAGTATCCAAAC+GGG + chr5.4:76841161-76841180 MS.gene020910:CDS 40.0%
ATCTTTGCAAGTCTGATCCT+TGG + chr5.4:76840895-76840914 MS.gene020910:CDS 40.0%
CAATCAGTTCTTGAACCATG+AGG - chr5.4:76841322-76841341 None:intergenic 40.0%
CTCATGGTTCAAGAACTGAT+TGG + chr5.4:76841320-76841339 MS.gene020910:CDS 40.0%
GACTTGCAAAGATCAACTTC+AGG - chr5.4:76840888-76840907 None:intergenic 40.0%
TACAAACTCTGGTTACTGGA+AGG + chr5.4:76841201-76841220 MS.gene020910:CDS 40.0%
TACTGCTGAACAATGTCATG+TGG + chr5.4:76841073-76841092 MS.gene020910:intron 40.0%
TAGGTGATATGGAACAAGAG+AGG + chr5.4:76841122-76841141 MS.gene020910:intron 40.0%
TCTAACAGAGCTACAAACTC+TGG + chr5.4:76841190-76841209 MS.gene020910:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG + chr5.4:76840896-76840915 MS.gene020910:CDS 40.0%
! CTCAGCTTCAAGTTCAAAAG+TGG + chr5.4:76841536-76841555 MS.gene020910:CDS 40.0%
! GAATGATGGAAGCAGGTAAA+GGG - chr5.4:76840866-76840885 None:intergenic 40.0%
AACACAGACGTCAGACACAA+TGG + chr5.4:76841007-76841026 MS.gene020910:intron 45.0%
AAGACGACTCGTGAAGTTGT+TGG + chr5.4:76841259-76841278 MS.gene020910:CDS 45.0%
AGAAAGACTAACCAAGGGGT+TGG - chr5.4:76841380-76841399 None:intergenic 45.0%
GAGCTACAAACTCTGGTTAC+TGG + chr5.4:76841197-76841216 MS.gene020910:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG - chr5.4:76841319-76841338 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG + chr5.4:76840906-76840925 MS.gene020910:CDS 45.0%
TTACTGGAAGGCAACTGGTT+TGG + chr5.4:76841213-76841232 MS.gene020910:CDS 45.0%
! AACTCACTCCCATCCTCTTT+TGG + chr5.4:76841660-76841679 MS.gene020910:CDS 45.0%
! ACTTCAGGAATGATGGAAGC+AGG - chr5.4:76840873-76840892 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG - chr5.4:76840867-76840886 None:intergenic 45.0%
GGATGAAAACGGAAACCTGC+TGG - chr5.4:76840792-76840811 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG + chr5.4:76841304-76841323 MS.gene020910:CDS 50.0%
TCGGTTCCCGTTTGGATACT+TGG - chr5.4:76841170-76841189 None:intergenic 50.0%
TCTGGTTACTGGAAGGCAAC+TGG + chr5.4:76841208-76841227 MS.gene020910:CDS 50.0%
! CTGTTAGATCGGTTCCCGTT+TGG - chr5.4:76841178-76841197 None:intergenic 50.0%
AACCAAGGGGTTGGAGTGAG+AGG - chr5.4:76841371-76841390 None:intergenic 55.0%
GGTGAAGTGAGATTGCCAGC+AGG + chr5.4:76840774-76840793 MS.gene020910:intron 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG - chr5.4:76841363-76841382 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG + chr5.4:76841366-76841385 MS.gene020910:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 76840772 76841692 76840772 ID=MS.gene020910
chr5.4 mRNA 76840772 76841692 76840772 ID=MS.gene020910.t1;Parent=MS.gene020910
chr5.4 exon 76840772 76840774 76840772 ID=MS.gene020910.t1.exon1;Parent=MS.gene020910.t1
chr5.4 CDS 76840772 76840774 76840772 ID=cds.MS.gene020910.t1;Parent=MS.gene020910.t1
chr5.4 exon 76840846 76840927 76840846 ID=MS.gene020910.t1.exon2;Parent=MS.gene020910.t1
chr5.4 CDS 76840846 76840927 76840846 ID=cds.MS.gene020910.t1;Parent=MS.gene020910.t1
chr5.4 exon 76841125 76841431 76841125 ID=MS.gene020910.t1.exon3;Parent=MS.gene020910.t1
chr5.4 CDS 76841125 76841431 76841125 ID=cds.MS.gene020910.t1;Parent=MS.gene020910.t1
chr5.4 exon 76841512 76841692 76841512 ID=MS.gene020910.t1.exon4;Parent=MS.gene020910.t1
chr5.4 CDS 76841512 76841692 76841512 ID=cds.MS.gene020910.t1;Parent=MS.gene020910.t1
Gene Sequence

>MS.gene020910

ATGGTGAAGTGAGATTGCCAGCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATATTTGAAGCCTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGTTGTACCTTTTCTTTTCTTTTCTTTTCTATTTTGTTCATTTATAATCATAACTTAATGAAGCACACGAAGCACAAACACAGACGTCAGACACAATGGACACTGACACGTTCAGACACCAGAACATGATAACTTCTACTACTACTGCTGAACAATGTCATGTGGATTAATTTGAGTATGTGTTGTTCTATTAGGTGATATGGAACAAGAGAGGTACTTTTTTAGTACTAAAGAAGCCAAGTATCCAAACGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAGGCAACTGGTTTGGACAAAGAAATCATGAATTCTTCGAAGACGACTCGTGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTTAGTCTTTCTTTCTTTCTTCCTTTCTTTCTTTCTCTGAATTTGTAATTAATATTAATATATGAATGAATTGGGTTTTGCAGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGTAGAGATGAGGTGAAGAAGAAGAAGAACTCAGCTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTCGCAGAGAAGAAGAAAAATACGGATGCATCATCCTCCTCAATCACAAATGAATTGGATGAACATGAAAATCAAGACAGCAGTAACTCACTCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MS.gene020910.t1

MPKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKEIMNSSKTTREVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLVSLSFFLPFFLSLNLDEVKKKKNSASSSKVVVFYDFFAEKKKNTDASSSSITNELDEHENQDSSNSLPSSFGNA