AlfalfaGEDB | MS.gene020911

M. sativa cultivar XinJiangDaYe / MS.gene020911

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020911.t1	XP_003620957.1	76.8	250	20	4	30	243	9	256	1.20E-80	309.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020911.t1	Q9FY93	73.9	157	37	2	28	182	6	160	2.7e-65	250.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020911.t1	G7KVL9	76.8	250	20	4	30	243	9	256	8.7e-81	309.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene020911.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020911.t1	MTR_7g005280	76.400	250	21	7	30	243	9	256	1.69e-122	348
MS.gene020911.t1	MTR_8g099750	55.155	194	72	5	28	211	6	194	4.34e-68	209
MS.gene020911.t1	MTR_3g098810	52.404	208	81	4	28	217	6	213	3.14e-66	205
MS.gene020911.t1	MTR_7g070140	65.031	163	17	2	81	243	12	134	7.38e-65	198
MS.gene020911.t1	MTR_3g098810	62.329	146	54	1	28	172	6	151	6.95e-60	187
MS.gene020911.t1	MTR_4g081870	56.886	167	58	4	28	184	1	163	7.40e-57	182
MS.gene020911.t1	MTR_5g041940	57.500	160	54	3	34	183	1	156	3.85e-56	180
MS.gene020911.t1	MTR_7g085220	49.721	179	73	4	33	195	5	182	5.43e-56	182
MS.gene020911.t1	MTR_2g080010	57.317	164	51	4	36	182	15	176	1.52e-55	181
MS.gene020911.t1	MTR_4g089135	54.237	177	50	4	35	182	14	188	7.95e-55	179

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene020911.t1	AT5G13180	73.125	160	39	2	28	185	6	163	3.99e-84	251
MS.gene020911.t1	AT2G33480	70.886	158	40	3	29	184	7	160	4.52e-79	239
MS.gene020911.t1	AT2G33480	70.000	160	40	3	29	184	7	162	8.77e-79	238
MS.gene020911.t1	AT3G04070	52.381	189	69	5	27	201	1	182	1.26e-55	181
MS.gene020911.t1	AT1G69490	57.669	163	54	4	36	188	9	166	5.09e-55	177
MS.gene020911.t1	AT1G61110	56.322	174	51	5	29	182	9	177	1.99e-54	177
MS.gene020911.t1	AT1G77450	51.705	176	68	5	27	192	1	169	1.24e-53	174
MS.gene020911.t1	AT3G04070	48.780	205	68	5	27	201	1	198	1.47e-53	176
MS.gene020911.t1	AT5G39610	53.333	165	64	4	28	183	11	171	6.05e-53	173
MS.gene020911.t1	AT1G33280	53.988	163	63	4	27	183	1	157	6.35e-52	171

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Find 60 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCGAAATATCCAAA+TGG	0.458276	5.4:+76860170	MS.gene020911:CDS
AAAGGGAAAGAGAAGACCTT+AGG	0.496728	5.4:-76859859	None:intergenic
AACTCACTCCCATCCTCTTT+TGG	0.255864	5.4:+76860664	MS.gene020911:CDS
AAGAAGCGAAATATCCAAAT+GGG	0.498616	5.4:+76860171	MS.gene020911:CDS
AAGACGACTCGTGAAGTTGT+TGG	0.418647	5.4:+76860269	MS.gene020911:CDS
AAGATCAACTTCAGGAATGA+TGG	0.468508	5.4:-76859890	None:intergenic
AAGCATTTCCAAAAGAGGAT+GGG	0.563423	5.4:-76860672	None:intergenic
ACAACAAGTTCTTCATCTGT+TGG	0.464543	5.4:-76859823	None:intergenic
ACTTCAGGAATGATGGAAGC+AGG	0.542259	5.4:-76859883	None:intergenic
AGAAAGACTGACCAAGGGGT+TGG	0.548887	5.4:-76860387	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGCGAAATATCCAAA+TGG	+	chr5.4:76860170-76860189	MS.gene020911:CDS	30.0%
AAGAAAGAAAGGAAAGGAAT+AGG	-	chr5.4:76859728-76859747	None:intergenic	30.0%
AAGAAGCGAAATATCCAAAT+GGG	+	chr5.4:76860171-76860190	MS.gene020911:CDS	30.0%
AGAAAGAAAGGAAAGGAATA+GGG	-	chr5.4:76859727-76859746	None:intergenic	30.0%
AGCTAGACTTATTAATCTAC+TGG	+	chr5.4:76858559-76858578	MS.gene020911:intron	30.0%
ATGAATTGAAAGAGATGGTA+AGG	+	chr5.4:76857125-76857144	MS.gene020911:intron	30.0%
TAGTAGAAGTTATCATGTTC+TGG	-	chr5.4:76860062-76860081	None:intergenic	30.0%
TATTCATTATTCTTGCGGTT+TGG	+	chr5.4:76857243-76857262	MS.gene020911:intron	30.0%
TGCTCTATGTTATAATACCA+AGG	+	chr5.4:76858376-76858395	MS.gene020911:intron	30.0%
TGGAAATGAATTGAAAGAGA+TGG	+	chr5.4:76857120-76857139	MS.gene020911:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	76856635	76860696	76856635	ID=MS.gene020911
chr5.4	mRNA	76856635	76860696	76856635	ID=MS.gene020911.t1;Parent=MS.gene020911
chr5.4	exon	76856635	76856721	76856635	ID=MS.gene020911.t1.exon1;Parent=MS.gene020911.t1
chr5.4	CDS	76856635	76856721	76856635	ID=cds.MS.gene020911.t1;Parent=MS.gene020911.t1
chr5.4	exon	76859781	76859940	76859781	ID=MS.gene020911.t1.exon2;Parent=MS.gene020911.t1
chr5.4	CDS	76859781	76859940	76859781	ID=cds.MS.gene020911.t1;Parent=MS.gene020911.t1
chr5.4	exon	76860135	76860397	76860135	ID=MS.gene020911.t1.exon3;Parent=MS.gene020911.t1
chr5.4	CDS	76860135	76860397	76860135	ID=cds.MS.gene020911.t1;Parent=MS.gene020911.t1
chr5.4	exon	76860475	76860696	76860475	ID=MS.gene020911.t1.exon4;Parent=MS.gene020911.t1
chr5.4	CDS	76860475	76860696	76860475	ID=cds.MS.gene020911.t1;Parent=MS.gene020911.t1

Gene Sequence

>MS.gene020911

ATGAAACGACGGATGTGGTGGATGACGACGACGGTGGTGAGGACGGCGTGTTCAGATCTGAAGGATTGGAGGTCGAAGATGATGGTGGTGAGGGCGGCGTGATGGAGTGGTGGAGGTGAAGACGAAGGGTAGGGGTGTTCGCGGTGCGGTTTGGTTCGGTTTTGAGTAAAAAAGTCATCCAAACCGCGAGATAAAAAAGCATGCGGTTTGGTTTGGTTCGGTTGATTTTTAAAAAGTCATCCAAACCAAACCAAACCAAACCAATGCGGTTTGGATTGGTTCGGTTTGTGCGGTTTATCGCGAGATAAAAAAAATATTACATTAACTCTAATATTGCCAACTAGTTACAAAATAAACATAGGACATTTTATTTTGATGTTTATATGATAAAATATTAGGTAAAACTTATATCAAAATAGGTAAAATTAAGAAGAAACATAAGCATGAAACAAATTATTGGGAAGTACAGAAAACAAATTCATCGCTGGAAATGAATTGAAAGAGATGGTAAGGAATTATAATCGAACCTGATGGCGCAACGATGGAAAAATCGAATCAAAAGAGATTATTCTTGAGCTATGTAATTGGGCTAGTACATATTTAAGTAATATTCATTATTCTTGCGGTTTGGTTTGGTTTGGTTCGGTTGCTGAGATGCAAACCGCAAACCGAACCGAACCGCGCGGTTTAGTGCAAAAGTCATCCGAATTCATCCGAACCAAGTGCGGTTTTTTGCGGTTTCGGTTTGGATTGGTTTGGTTTGCGGTTTTTCTATTGGGTTGGTTCGGTTTTGAACACCCCTAACGAAGGGTGTGATGGTGAGGACGGTGGTGGTAGTGACTGAAAAGAATGGTGGTGGTGGTGATTGGTGAGGTGAGGTGAGGTGAGGTGAGGTGCGGTGGTGAGGTCGGTGGTGGTGGTGGTGGCCGAAAAGAACGGTGGTGGTGGTGGTGACTGAAAAGAATTTTTAAGTTTTAAGTTTTATTTATTTTTGGTTGAATTGTAATTTTAAATAATTATTTATTTATTTTTTTAATTAAAAAAAGATGATTTGTTGACATGTTAATAAAATATGCAAGTTGGCATTGCCACATAGGTGATCTTTTGGCCACATCACTTAAAAATTGGACACATCAGCGTTTTTGGAGGAAAAAATGGGGGGTAGGACCAAAAGTGCAACAAAAATGATGACTGAAGGACCAGTTTTGTCAGGTTTTAAAAGGGCATGACCAATTTCGCGAGTTGGACAAAACACGAGGACCAAAAGTGTAATTAATTAAGCCTAAATTTTTTCCAAATGTAAGCTATTTTTACATAAAACTACATATCATAAATGTAAGCTCATTTAATAAAAATCTAAAGATCATACTTACAATAGAAAGATAAATCATATAATTTTACAGATTAGAAATTAAACATTCAAAAAAAAGCAAGAAATTTATATTGATAAATAATTTTAAGATTTACAAAATGACAAGCCAATTCAGGTACACGGTACAATCCTAGTAAGCACAATCATACACACACACACACACACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCTTAGATGAAAATAAGAAGGAAAAAGTTACAAATTTGCTCCTTCAATGGGAAAAAGTTTTTTTTTTTTAGTCAATTTCTATCCTATTACAAATGCTCTATGTTATAATACCAAGGCCCTCAATCATTTTTTAAGAACCTAACATGCTAACTTGCACCCTTAGGGCACATGTTAACCATTAATGTCATTCCATTAATGCTAAGAATTTATTAAAAAAAATTAATATTAACCATTTTGAGTAGTATATATGTCATATTATATTTCATTTGATTTAAGAGCTAGACTTATTAATCTACTGGTAAAAATAAACTCATACAATCAACGAGAGTTTAACTCAGTTGGTAGGGATATTGCATATTATATGTAGGGGTTGGGGTTCGAACCCCGGACACCTCATTTCTCCACATTTAAAATGTGAACTTATACATGATCTATAAATTTTAATTCAATTGATAAAAATACCAAAATTGTTAGATTAAATGTTGTGACTGAGTTTGATCCCTAACTCCTATACAATTATCATCATTTTGTTTATCTACAAAAGACATATACAACAAATAAGATCCACTTTACTTGTGTATCATAAAATAAACAAATAGGAATATGGGTTGCTTCTCATTTTCATATATATCATAGTAATCAAGTTTGCTTTGGTTTATAATTTATAAATTTATATGATTAAAAAAGATCGATCTATTCTTCTGTCAAAAAAAAAAGATCGATCTATTCAATAACAATATTTTTATTTTGGCGCAGTTGCACGTCTACATATGAGGTTGGCGTGAAAATGAGAAGCAACTATTTGTTGCATCAAAAAAATGTGTGCGTGTTGGTATGGTGAACGCGGAAACAAACATAGAATGTATCCAACGAAATCTGAAATCACAGTCATTGTAAAATTACACACATCCAAATTTCATAACAAATGAAATAAGAGATTGCATTACGTCTTGGCCGGAATGCACGGGTCAATGCTTAATGATATCGTTTTGCTAGACAATCATGAGGAAATTTTTCGCTAGGTCATACATTTTCGATTTTTTTTAGTAGTTTATAACATATATTTATAAGATACTTCAACTACCGTTTGAATTTATAACTCAGATTTCTTCTAAATTCTACGCTTGTCCTCTTCATTAAAAAATTCTAAATATAATTCCTTTTATGTTAGTATTTTACATTCATCATGTAATTTAACAATTAAATTTACCATACATTAAAAATTGAACTAACCAATTCTTCAGCTATCAACTAATATGTACTAACTTAGAAATGAAAGAGTTAAAGAAAGGATAGTTAAGAGAAAACGTGAAAGTGAAAAGAAGAGTTAAATATAGTTTACGCCACTCAACTCAAACAAATGTCGTCTTATTCTTCATCTTCAGACTCATTTGACTCATTACTATAAAAGAAGACACACTTCATTTCACTCTTCTCCATGCCCTATTCCTTTCCTTTCTTTCTTTATCATTTCAATTTCAAGATAAATTTTGTGAAGAAGAATGGTGAAGTGAGATTGCCAGCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATATTTGAAGCCTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGCTGTACCTTTTCTTTTCTTTTCTATTTTGTTCATTTATAATCATAACTTAATGAAGCACACGAAGCATAGACACAGACATCGGACACAACATGGACACTGACATGTTCAGACACCAGAACATGATAACTTCTACTACTACTGCTGAACAATGTCATGTGGATTAATTTGAGTGTGTGTTGTTCTATTAGGTGATATGGAACAAGAGAGGTACTTTTTCAGTAATAAAGAAGCGAAATATCCAAATGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAGGCAACTGGTTTGGACAAAGAAATCATGAATTCTTCGAAGACGACTCGTGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTCAGTCTTTCTTTCTTCCTTTCTTTCTTTCTCTGAATTTGTAATTAATATTAATATGAATGAATTGGGTTTTGCAGAATGAAAATTGGGTTTTGTGTCGCATATTTCTGAAGAGGAGAGGTGAGGTGAAGAAGAAGCAGAACTCAGCTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTCGCAGAGAGGAAGAAAAATACTGATGCATCCTCCTCCTCAATCACAAATGAATTGGATGAACATGAAAATCAAGACAGCAGTAACTCACTCCCATCCTCTTTTGGAAATGCTTAA

Protein sequence

>MS.gene020911.t1

MKRRMWWMTTTVVRTACSDLKDWRSKMMVKNGEVRLPAGFRFHPTDEELVVQYLKPKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSNKEAKYPNGNRSNRATNSGYWKATGLDKEIMNSSKTTREVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGEVKKKQNSASSSKVVVFYDFFAERKKNTDASSSSITNELDEHENQDSSNSLPSSFGNA