AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020912

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020912.t1 MTR_7g005280 74.118 255 25 7 1 216 4 256 8.38e-120 340
MS.gene020912.t1 MTR_8g099750 54.688 192 71 6 1 182 4 189 7.99e-68 207
MS.gene020912.t1 MTR_3g098810 53.500 200 74 5 1 182 4 202 1.92e-65 202
MS.gene020912.t1 MTR_7g070140 63.804 163 16 3 57 216 12 134 1.72e-60 186
MS.gene020912.t1 MTR_3g098810 60.403 149 57 2 1 148 4 151 1.25e-58 182
MS.gene020912.t1 MTR_7g070150 88.421 95 8 2 100 194 1 92 4.82e-54 168
MS.gene020912.t1 MTR_4g081870 55.975 159 56 4 12 160 9 163 1.24e-53 173
MS.gene020912.t1 MTR_5g041940 54.375 160 59 3 10 159 1 156 4.41e-53 171
MS.gene020912.t1 MTR_7g085220 47.191 178 79 3 9 171 5 182 8.11e-53 173
MS.gene020912.t1 MTR_2g080010 54.268 164 56 4 12 158 15 176 1.50e-52 172
MS.gene020912.t1 MTR_4g089135 51.412 177 55 4 11 158 14 188 5.69e-52 171
MS.gene020912.t1 MTR_2157s0010 51.235 162 63 4 12 158 8 168 3.44e-50 164
MS.gene020912.t1 MTR_7g100990 50.955 157 65 4 9 155 8 162 9.22e-50 165
MS.gene020912.t1 MTR_2g093810 51.299 154 63 3 12 155 14 165 4.39e-49 163
MS.gene020912.t1 MTR_3g088110 50.000 176 74 4 9 175 4 174 4.45e-49 162
MS.gene020912.t1 MTR_3g109340 48.521 169 80 4 9 173 19 184 3.61e-48 161
MS.gene020912.t1 MTR_3g109340 48.235 170 80 4 9 173 19 185 6.04e-48 161
MS.gene020912.t1 MTR_3g064580 53.165 158 61 3 10 158 4 157 6.48e-48 167
MS.gene020912.t1 MTR_6g084430 47.904 167 79 3 9 171 2 164 6.75e-48 160
MS.gene020912.t1 MTR_1g008740 48.000 175 83 4 9 177 10 182 8.90e-48 160
MS.gene020912.t1 MTR_1g008740 48.000 175 83 4 9 177 24 196 1.14e-47 160
MS.gene020912.t1 MTR_4g035590 52.903 155 61 5 12 159 8 157 4.77e-47 158
MS.gene020912.t1 MTR_2g079990 49.133 173 78 3 8 174 12 180 5.48e-47 158
MS.gene020912.t1 MTR_5g012080 45.833 168 80 3 11 170 6 170 6.87e-47 158
MS.gene020912.t1 MTR_2g064090 47.701 174 77 5 10 174 4 172 8.92e-47 157
MS.gene020912.t1 MTR_5g021710 43.617 188 95 4 9 189 5 188 1.13e-46 157
MS.gene020912.t1 MTR_4g036030 50.968 155 65 4 12 159 7 157 2.46e-46 156
MS.gene020912.t1 MTR_2g062730 46.341 164 78 3 3 159 1 161 2.67e-46 156
MS.gene020912.t1 MTR_7g085260 47.126 174 83 4 10 175 15 187 3.34e-46 157
MS.gene020912.t1 MTR_4g108760 48.765 162 71 4 5 158 10 167 6.63e-46 155
MS.gene020912.t1 MTR_3g096920 42.991 214 102 8 8 210 3 207 8.20e-46 154
MS.gene020912.t1 MTR_8g076110 48.171 164 73 5 12 168 6 164 9.27e-46 154
MS.gene020912.t1 MTR_8g094580 42.254 213 102 7 8 210 3 204 1.08e-45 153
MS.gene020912.t1 MTR_3g435150 46.951 164 75 3 3 158 7 166 1.48e-45 153
MS.gene020912.t1 MTR_4g101680 48.765 162 72 3 11 165 6 163 1.70e-45 155
MS.gene020912.t1 MTR_8g059170 47.753 178 72 5 9 178 11 175 3.06e-45 153
MS.gene020912.t1 MTR_5g076850 50.318 157 66 4 10 158 4 156 3.83e-45 159
MS.gene020912.t1 MTR_6g477900 39.810 211 107 6 10 205 4 209 1.63e-44 149
MS.gene020912.t1 MTR_6g032770 44.970 169 83 3 5 165 11 177 2.04e-44 152
MS.gene020912.t1 MTR_3g070030 46.746 169 77 4 6 165 13 177 2.37e-44 151
MS.gene020912.t1 MTR_1g069805 41.748 206 109 5 12 209 10 212 2.46e-44 149
MS.gene020912.t1 MTR_1g096430 47.771 157 71 3 9 158 4 156 8.29e-44 150
MS.gene020912.t1 MTR_2g068920 44.262 183 82 4 2 166 12 192 1.13e-43 148
MS.gene020912.t1 MTR_2g068880 45.614 171 74 3 4 156 15 184 1.26e-43 149
MS.gene020912.t1 MTR_8g024480 43.678 174 76 3 4 159 7 176 1.36e-43 151
MS.gene020912.t1 MTR_5g090970 44.681 188 88 5 5 178 12 197 1.36e-43 148
MS.gene020912.t1 MTR_6g012670 44.785 163 78 3 4 158 12 170 1.81e-43 148
MS.gene020912.t1 MTR_2g078700 47.468 158 73 3 9 158 20 175 2.06e-43 150
MS.gene020912.t1 MTR_5g090970 44.444 189 88 5 5 178 12 198 5.43e-43 147
MS.gene020912.t1 MTR_5g040420 45.714 175 78 4 5 165 8 179 6.66e-43 149
MS.gene020912.t1 MTR_2g079990 42.289 201 78 3 8 174 12 208 1.46e-42 147
MS.gene020912.t1 MTR_8g467490 44.068 177 81 4 4 165 7 180 2.56e-42 147
MS.gene020912.t1 MTR_7g097090 47.973 148 71 3 12 156 10 154 4.10e-42 144
MS.gene020912.t1 MTR_2g064470 45.143 175 76 6 9 173 8 172 4.14e-42 144
MS.gene020912.t1 MTR_5g014300 44.654 159 80 2 8 158 2 160 9.57e-42 144
MS.gene020912.t1 MTR_3g116070 50.000 150 68 4 2 147 14 160 2.28e-41 144
MS.gene020912.t1 MTR_6g011860 46.296 162 69 4 12 158 15 173 2.49e-40 142
MS.gene020912.t1 MTR_7g011120 44.970 169 74 4 6 159 2 166 3.26e-40 139
MS.gene020912.t1 MTR_4g098630 38.679 212 119 4 12 213 6 216 3.37e-40 140
MS.gene020912.t1 MTR_7g011130 41.398 186 82 4 6 170 13 192 3.49e-40 140
MS.gene020912.t1 MTR_3g093040 44.586 157 75 3 10 158 106 258 4.31e-40 139
MS.gene020912.t1 MTR_3g096920 36.653 251 102 8 8 210 3 244 8.31e-40 139
MS.gene020912.t1 MTR_5g069030 40.476 210 99 5 11 212 24 215 2.48e-38 140
MS.gene020912.t1 MTR_3g093050 45.806 155 72 3 12 158 22 172 5.83e-38 139
MS.gene020912.t1 MTR_3g070040 42.353 170 81 3 6 165 2 164 7.18e-38 134
MS.gene020912.t1 MTR_3g093050 45.806 155 72 3 12 158 22 172 8.20e-38 138
MS.gene020912.t1 MTR_4g075980 37.019 208 121 5 9 213 13 213 1.06e-36 130
MS.gene020912.t1 MTR_3g096140 44.516 155 68 5 15 158 10 157 1.87e-36 129
MS.gene020912.t1 MTR_1g090720 47.531 162 65 4 12 158 42 198 8.75e-36 131
MS.gene020912.t1 MTR_3g096140 44.516 155 68 5 15 158 10 157 1.56e-35 128
MS.gene020912.t1 MTR_2g086880 41.530 183 86 6 4 175 5 177 5.58e-35 129
MS.gene020912.t1 MTR_1g090723 45.098 153 71 4 15 158 11 159 5.73e-35 130
MS.gene020912.t1 MTR_2g086880 41.530 183 86 6 4 175 5 177 7.55e-35 130
MS.gene020912.t1 MTR_1g090723 44.737 152 72 4 15 158 11 158 1.29e-34 129
MS.gene020912.t1 MTR_1g090723 44.737 152 72 4 15 158 11 158 1.53e-34 129
MS.gene020912.t1 MTR_0036s0150 45.098 153 70 5 15 158 8 155 8.45e-34 127
MS.gene020912.t1 MTR_1g097300 48.855 131 54 3 15 138 22 146 1.19e-33 126
MS.gene020912.t1 MTR_4g134460 45.223 157 77 5 9 161 52 203 1.56e-33 124
MS.gene020912.t1 MTR_8g023840 43.709 151 74 5 12 156 11 156 5.35e-33 122
MS.gene020912.t1 MTR_8g063550 41.509 159 77 4 11 159 5 157 9.60e-33 120
MS.gene020912.t1 MTR_8g063550 41.509 159 77 4 11 159 5 157 2.02e-32 122
MS.gene020912.t1 MTR_8g063550 41.509 159 77 4 11 159 5 157 4.32e-32 120
MS.gene020912.t1 MTR_4g094302 39.744 156 74 4 12 156 11 157 7.68e-32 115
MS.gene020912.t1 MTR_4g094302 43.411 129 62 3 12 138 11 130 1.70e-30 110
MS.gene020912.t1 MTR_8g093580 40.252 159 79 4 11 159 5 157 2.39e-30 117
MS.gene020912.t1 MTR_2g086690 35.185 216 106 9 13 201 5 213 1.01e-28 108
MS.gene020912.t1 MTR_8g023860 38.158 152 83 5 11 156 11 157 1.70e-27 108
MS.gene020912.t1 MTR_8g023900 40.397 151 79 5 14 158 195 340 1.73e-27 108
MS.gene020912.t1 MTR_8g023900 37.654 162 90 5 12 167 12 168 3.86e-27 107
MS.gene020912.t1 MTR_4g052620 38.750 160 81 6 12 157 5 161 5.64e-27 103
MS.gene020912.t1 MTR_3g096140 41.135 141 65 5 29 158 3 136 8.32e-27 105
MS.gene020912.t1 MTR_8g093790 40.000 165 72 8 10 171 8 148 1.14e-26 101
MS.gene020912.t1 MTR_8g023880 37.234 188 87 8 12 178 7 184 1.41e-26 103
MS.gene020912.t1 MTR_8g094580 39.103 156 77 6 62 210 6 150 5.81e-26 100
MS.gene020912.t1 MTR_8g023930 39.216 153 82 5 12 158 24 171 2.09e-25 103
MS.gene020912.t1 MTR_7g105170 31.765 170 88 7 12 160 4 166 2.24e-20 86.7
MS.gene020912.t1 MTR_3g096400 32.143 168 80 7 10 156 5 159 1.40e-17 78.2
MS.gene020912.t1 MTR_7g083370 30.282 142 88 5 7 143 5 140 4.69e-17 75.1
MS.gene020912.t1 MTR_7g083360 31.111 135 82 5 7 136 5 133 1.96e-16 73.9
MS.gene020912.t1 MTR_7g083330 29.825 171 107 6 2 166 9 172 6.29e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020912.t1 AT5G13180 69.697 165 44 3 1 161 1 163 2.35e-79 238
MS.gene020912.t1 AT2G33480 68.354 158 45 2 4 160 7 160 1.24e-76 231
MS.gene020912.t1 AT2G33480 67.500 160 45 2 4 160 7 162 2.12e-76 231
MS.gene020912.t1 AT3G04070 49.735 189 74 5 3 177 1 182 1.29e-52 172
MS.gene020912.t1 AT1G69490 54.601 163 59 4 12 164 9 166 4.15e-52 169
MS.gene020912.t1 AT1G61110 54.386 171 53 5 8 158 12 177 2.56e-51 169
MS.gene020912.t1 AT3G04070 46.341 205 73 5 3 177 1 198 2.07e-50 167
MS.gene020912.t1 AT1G77450 47.727 176 75 5 3 168 1 169 8.05e-50 163
MS.gene020912.t1 AT2G24430 51.205 166 72 4 6 166 10 171 5.21e-49 162
MS.gene020912.t1 AT2G24430 51.205 166 72 4 6 166 10 171 5.21e-49 162
MS.gene020912.t1 AT5G39610 47.305 167 76 3 1 159 9 171 6.69e-49 161
MS.gene020912.t1 AT3G15510 53.125 160 56 4 16 158 21 178 9.65e-49 163
MS.gene020912.t1 AT1G33280 50.000 154 67 2 12 159 8 157 1.00e-48 161
MS.gene020912.t1 AT4G27410 49.693 163 72 3 9 165 11 169 1.34e-48 161
MS.gene020912.t1 AT5G61430 49.102 167 73 4 3 161 7 169 1.46e-48 162
MS.gene020912.t1 AT1G65910 49.682 157 67 3 10 158 4 156 4.44e-48 167
MS.gene020912.t1 AT4G10350 49.708 171 71 5 12 173 9 173 5.60e-48 160
MS.gene020912.t1 AT5G07680 49.068 161 70 4 9 161 14 170 8.50e-48 160
MS.gene020912.t1 AT5G17260 40.278 216 116 3 10 216 4 215 9.19e-48 163
MS.gene020912.t1 AT5G07680 50.000 158 67 4 12 161 3 156 1.15e-47 159
MS.gene020912.t1 AT3G04060 51.592 157 65 4 10 158 18 171 2.41e-47 159
MS.gene020912.t1 AT3G03200 46.199 171 79 3 10 171 4 170 4.88e-47 161
MS.gene020912.t1 AT1G54330 50.920 163 69 3 10 166 4 161 5.39e-47 157
MS.gene020912.t1 AT1G12260 48.214 168 76 4 12 172 7 170 6.73e-47 158
MS.gene020912.t1 AT3G18400 50.968 155 67 4 9 158 2 152 8.14e-47 157
MS.gene020912.t1 AT1G62700 48.023 177 81 4 11 180 6 178 8.50e-47 159
MS.gene020912.t1 AT1G62700 48.023 177 81 4 11 180 6 178 8.50e-47 159
MS.gene020912.t1 AT1G76420 49.677 155 71 3 9 158 19 171 1.44e-46 157
MS.gene020912.t1 AT1G52880 50.292 171 63 3 16 172 21 183 1.76e-46 156
MS.gene020912.t1 AT2G18060 47.727 176 78 5 12 180 9 177 2.31e-46 157
MS.gene020912.t1 AT2G18060 47.727 176 78 5 12 180 9 177 2.31e-46 157
MS.gene020912.t1 AT1G12260 48.214 168 76 4 12 172 7 170 2.49e-46 157
MS.gene020912.t1 AT4G36160 46.667 180 79 5 12 182 14 185 2.79e-46 157
MS.gene020912.t1 AT4G36160 46.667 180 79 5 12 182 10 181 3.34e-46 157
MS.gene020912.t1 AT4G36160 46.667 180 79 5 12 182 10 181 3.34e-46 157
MS.gene020912.t1 AT5G18270 49.045 157 69 3 10 158 19 172 3.71e-46 155
MS.gene020912.t1 AT1G79580 47.853 163 74 3 4 159 9 167 4.26e-46 156
MS.gene020912.t1 AT1G79580 47.853 163 74 3 4 159 9 167 4.26e-46 156
MS.gene020912.t1 AT1G79580 47.853 163 74 3 4 159 9 167 4.26e-46 156
MS.gene020912.t1 AT1G79580 47.853 163 74 3 4 159 9 167 4.26e-46 156
MS.gene020912.t1 AT1G79580 47.853 163 74 3 4 159 9 167 4.26e-46 156
MS.gene020912.t1 AT5G62380 50.943 159 63 6 10 159 5 157 4.76e-46 155
MS.gene020912.t1 AT5G62380 50.943 159 63 6 10 159 5 157 4.76e-46 155
MS.gene020912.t1 AT1G01720 42.991 214 100 7 10 210 5 209 6.28e-46 154
MS.gene020912.t1 AT5G18270 49.045 157 69 3 10 158 19 172 7.75e-46 155
MS.gene020912.t1 AT3G15170 47.619 168 77 5 9 168 17 181 8.42e-46 154
MS.gene020912.t1 AT5G66300 48.780 164 72 4 4 159 4 163 9.98e-46 153
MS.gene020912.t1 AT4G27410 45.556 180 71 4 9 165 11 186 1.21e-45 154
MS.gene020912.t1 AT3G17730 47.771 157 70 3 10 158 4 156 2.07e-45 151
MS.gene020912.t1 AT5G46590 43.820 178 88 3 8 176 2 176 9.22e-45 151
MS.gene020912.t1 AT1G52890 48.214 168 69 4 9 170 11 166 1.07e-44 151
MS.gene020912.t1 AT1G33060 49.032 155 67 3 12 158 24 174 1.07e-44 157
MS.gene020912.t1 AT1G33060 49.032 155 67 3 12 158 24 174 1.16e-44 157
MS.gene020912.t1 AT5G63790 43.137 204 91 6 3 195 41 230 1.26e-44 151
MS.gene020912.t1 AT4G35580 41.905 210 102 5 12 213 9 206 1.37e-44 156
MS.gene020912.t1 AT4G35580 41.905 210 102 5 12 213 9 206 1.39e-44 155
MS.gene020912.t1 AT5G63790 43.137 204 91 6 3 195 51 240 1.40e-44 151
MS.gene020912.t1 AT4G35580 41.905 210 102 5 12 213 9 206 1.53e-44 155
MS.gene020912.t1 AT2G33480 64.486 107 31 2 57 160 3 105 2.55e-44 147
MS.gene020912.t1 AT3G15500 46.199 171 82 3 9 173 11 177 6.72e-44 149
MS.gene020912.t1 AT5G53950 48.387 155 70 3 12 158 17 169 8.14e-44 150
MS.gene020912.t1 AT1G71930 36.444 225 118 4 12 215 9 229 1.99e-43 148
MS.gene020912.t1 AT1G71930 36.444 225 118 4 12 215 9 229 1.99e-43 148
MS.gene020912.t1 AT3G12977 43.094 181 90 5 9 180 15 191 3.10e-43 147
MS.gene020912.t1 AT5G08790 41.706 211 102 6 9 208 4 204 3.29e-43 147
MS.gene020912.t1 AT2G46770 43.258 178 75 4 4 159 8 181 4.65e-43 148
MS.gene020912.t1 AT1G56010 43.678 174 84 4 9 172 16 185 4.82e-43 147
MS.gene020912.t1 AT3G61910 40.722 194 88 6 4 175 3 191 8.54e-43 147
MS.gene020912.t1 AT3G29035 44.706 170 82 3 4 165 16 181 1.22e-42 146
MS.gene020912.t1 AT1G32770 42.442 172 76 4 7 159 11 178 7.28e-42 145
MS.gene020912.t1 AT5G39820 42.000 200 78 6 4 176 13 201 1.12e-41 144
MS.gene020912.t1 AT3G10490 48.077 156 68 3 12 158 27 178 1.60e-41 141
MS.gene020912.t1 AT3G10480 48.718 156 67 3 12 158 27 178 2.76e-41 145
MS.gene020912.t1 AT5G46590 46.259 147 71 2 8 149 2 145 4.12e-41 141
MS.gene020912.t1 AT3G10500 49.032 155 67 3 12 158 9 159 6.48e-41 146
MS.gene020912.t1 AT2G17040 41.837 196 90 7 9 187 4 192 6.85e-41 140
MS.gene020912.t1 AT5G04410 49.677 155 66 3 12 158 9 159 8.27e-41 146
MS.gene020912.t1 AT4G17980 44.099 161 78 3 8 158 2 160 9.56e-41 140
MS.gene020912.t1 AT4G17980 44.099 161 78 3 8 158 2 160 1.52e-40 140
MS.gene020912.t1 AT3G10480 48.387 155 68 3 12 158 27 177 3.80e-40 142
MS.gene020912.t1 AT3G10490 48.077 156 68 3 12 158 27 178 1.77e-39 141
MS.gene020912.t1 AT3G12910 46.386 166 68 6 10 156 20 183 2.20e-39 137
MS.gene020912.t1 AT4G28530 44.706 170 70 6 11 160 9 174 7.55e-39 137
MS.gene020912.t1 AT1G26870 45.562 169 74 5 5 158 10 175 1.92e-38 137
MS.gene020912.t1 AT2G43000 38.462 208 108 6 9 209 16 210 4.30e-38 133
MS.gene020912.t1 AT1G32510 38.835 206 107 4 12 198 6 211 5.15e-38 133
MS.gene020912.t1 AT3G10480 40.741 189 66 3 12 158 27 211 4.05e-37 135
MS.gene020912.t1 AT1G34190 45.679 162 73 5 6 158 11 166 2.43e-36 134
MS.gene020912.t1 AT1G34180 49.296 142 62 3 2 138 7 143 5.01e-36 131
MS.gene020912.t1 AT1G34180 49.296 142 62 3 2 138 7 143 1.13e-35 132
MS.gene020912.t1 AT5G24590 44.375 160 70 5 12 159 13 165 2.18e-35 130
MS.gene020912.t1 AT2G02450 47.020 151 72 5 15 161 54 200 3.26e-35 128
MS.gene020912.t1 AT2G02450 47.020 151 72 5 15 161 54 200 4.28e-35 128
MS.gene020912.t1 AT1G34180 45.455 154 62 3 2 138 7 155 4.35e-35 129
MS.gene020912.t1 AT1G34180 45.455 154 62 3 2 138 7 155 1.00e-34 129
MS.gene020912.t1 AT3G49530 42.581 155 78 4 12 158 13 164 2.68e-34 126
MS.gene020912.t1 AT3G49530 42.581 155 78 4 12 158 13 164 3.24e-34 127
MS.gene020912.t1 AT5G64060 42.138 159 80 3 8 158 2 156 7.42e-34 124
MS.gene020912.t1 AT2G27300 35.079 191 110 4 15 201 17 197 6.42e-33 121
MS.gene020912.t1 AT5G22290 40.000 165 82 5 15 175 24 175 8.78e-33 121
MS.gene020912.t1 AT5G09330 42.857 161 76 4 8 158 2 156 4.42e-32 121
MS.gene020912.t1 AT5G09330 42.857 161 76 4 8 158 2 156 4.42e-32 121
MS.gene020912.t1 AT5G09330 42.857 161 76 4 8 158 2 156 4.42e-32 121
MS.gene020912.t1 AT5G09330 42.857 161 76 4 8 158 2 156 4.42e-32 121
MS.gene020912.t1 AT5G09330 42.857 161 76 4 8 158 2 156 4.42e-32 121
MS.gene020912.t1 AT4G10350 50.435 115 48 3 62 173 18 126 4.59e-32 118
MS.gene020912.t1 AT3G44290 40.690 145 74 3 15 155 17 153 5.90e-32 116
MS.gene020912.t1 AT3G44290 40.690 145 74 3 15 155 17 153 4.98e-31 116
MS.gene020912.t1 AT5G14000 37.195 164 95 4 7 167 10 168 2.70e-30 111
MS.gene020912.t1 AT5G04395 40.136 147 71 2 9 139 25 170 6.97e-29 107
MS.gene020912.t1 AT5G14000 38.776 147 83 3 7 150 10 152 9.64e-29 105
MS.gene020912.t1 AT5G61430 49.074 108 46 3 62 164 6 109 2.48e-28 108
MS.gene020912.t1 AT5G64530 35.638 188 89 5 10 178 1 175 3.77e-28 105
MS.gene020912.t1 AT3G12977 44.355 124 59 4 63 180 19 138 1.57e-27 104
MS.gene020912.t1 AT1G56010 45.133 113 52 2 66 172 10 118 1.78e-27 105
MS.gene020912.t1 AT5G64530 42.748 131 60 4 10 138 1 118 7.49e-27 101
MS.gene020912.t1 AT1G32870 46.154 143 64 4 1 138 1 135 9.16e-27 107
MS.gene020912.t1 AT1G32870 46.154 143 64 4 1 138 1 135 9.65e-27 107
MS.gene020912.t1 AT1G32870 41.667 168 80 5 1 158 37 196 1.21e-26 107
MS.gene020912.t1 AT1G02230 37.288 177 97 7 13 182 4 173 1.26e-26 105
MS.gene020912.t1 AT4G01550 37.576 165 93 6 14 171 6 167 1.22e-25 103
MS.gene020912.t1 AT4G01520 37.647 170 94 7 13 175 5 169 1.25e-25 101
MS.gene020912.t1 AT4G01540 38.095 168 92 7 15 175 7 169 3.34e-25 101
MS.gene020912.t1 AT4G01540 38.095 168 92 7 15 175 7 169 4.81e-25 101
MS.gene020912.t1 AT4G01540 38.095 168 92 7 15 175 7 169 5.23e-25 101
MS.gene020912.t1 AT5G50820 33.333 210 104 7 3 207 8 186 7.51e-25 97.1
MS.gene020912.t1 AT4G01540 38.095 168 92 7 15 175 7 169 7.94e-25 101
MS.gene020912.t1 AT3G04420 38.125 160 84 6 13 165 4 155 1.28e-24 98.6
MS.gene020912.t1 AT3G04420 38.125 160 84 6 13 165 4 155 1.76e-24 99.0
MS.gene020912.t1 AT1G02250 39.869 153 80 5 13 158 4 151 1.40e-23 97.1
MS.gene020912.t1 AT3G44350 35.625 160 86 5 12 158 5 160 8.35e-23 92.8
MS.gene020912.t1 AT2G18060 47.368 95 42 3 87 180 2 89 1.20e-21 90.5
MS.gene020912.t1 AT5G22380 35.443 158 83 5 15 157 8 161 1.98e-21 89.0
MS.gene020912.t1 AT3G44350 36.879 141 76 4 12 143 5 141 3.67e-21 86.3
MS.gene020912.t1 AT3G10490 49.383 81 33 2 82 158 2 78 4.59e-19 84.3
MS.gene020912.t1 AT3G10490 49.383 81 33 2 82 158 2 78 4.59e-19 84.3
MS.gene020912.t1 AT1G02220 37.419 155 75 6 13 157 4 146 7.60e-19 84.3
MS.gene020912.t1 AT2G43000 33.571 140 77 4 74 209 5 132 1.21e-17 78.2
MS.gene020912.t1 AT4G28530 37.121 132 60 5 11 122 9 137 4.48e-17 78.6
MS.gene020912.t1 AT5G41090 29.193 161 94 4 12 159 8 161 6.54e-16 73.6
MS.gene020912.t1 AT1G01010 33.333 159 85 7 14 158 5 156 1.90e-14 71.6
MS.gene020912.t1 AT3G56530 32.099 162 87 8 9 157 49 200 2.57e-14 70.9
MS.gene020912.t1 AT3G55210 31.953 169 81 7 12 157 11 168 3.02e-14 70.1
MS.gene020912.t1 AT5G22290 43.678 87 36 4 88 174 2 75 3.17e-14 69.7
MS.gene020912.t1 AT5G14000 54.717 53 24 0 7 59 10 62 1.70e-13 67.8
MS.gene020912.t1 AT4G29230 29.545 176 91 8 10 158 46 215 7.08e-11 61.2
MS.gene020912.t1 AT4G29230 29.545 176 91 8 10 158 45 214 7.41e-11 61.2
MS.gene020912.t1 AT4G29230 29.545 176 91 8 10 158 46 215 8.73e-11 61.2

Find 42 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCACTCCCATCCTCTTT+TGG 0.255864 5.4:+76866444 MS.gene020912:CDS
GAACTACAAACTCTGCTTAC+TGG 0.301758 5.4:+76865996 MS.gene020912:CDS
CTGTTAGATTGGTTCACATT+TGG 0.329345 5.4:-76865974 None:intergenic
TTGGTTCACATTTGGATACT+TGG 0.365045 5.4:-76865966 None:intergenic
GGTTGGAGTGAGAGGAAGTT+AGG 0.397038 5.4:-76866159 None:intergenic
AGTTTGTAGTTCTGTTAGAT+TGG 0.408152 5.4:-76865985 None:intergenic
TTCATGTTCATTTGTGATTG+AGG 0.408967 5.4:-76866406 None:intergenic
TCTTCGCAAGTCTGATCCTT+GGG 0.412746 5.4:+76865692 MS.gene020912:CDS
AAGACGACTCGTGAAGTTGT+TGG 0.418647 5.4:+76866058 MS.gene020912:CDS
ATCTTCGCAAGTCTGATCCT+TGG 0.421350 5.4:+76865691 MS.gene020912:CDS
CTTCATCTGTTGGATGAAAA+CGG 0.429980 5.4:-76865596 None:intergenic
TGTTCAATATTTGAAGTGTA+AGG 0.430660 5.4:+76865626 MS.gene020912:CDS
TCTGCTTACTGGAAGGCAAC+TGG 0.444903 5.4:+76866007 MS.gene020912:CDS
TTACTGGAAGGCAACTGGTT+TGG 0.452860 5.4:+76866012 MS.gene020912:CDS
ACAACAAGTTCTTCATCTGT+TGG 0.464543 5.4:-76865606 None:intergenic
CTCAGCTTCAAGTTCGAAAG+TGG 0.494091 5.4:+76866329 MS.gene020912:CDS
AAGATCAACTTGAGGAATGA+TGG 0.494870 5.4:-76865673 None:intergenic
TTCATTTGTGATTGAGGAGG+AGG 0.495223 5.4:-76866400 None:intergenic
GAATGATGGAAGCAGGTAAA+GGG 0.498100 5.4:-76865659 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 5.4:-76866453 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 5.4:-76866457 None:intergenic
AGAAAGACTGACCAAGGGGT+TGG 0.532390 5.4:-76866176 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.537069 5.4:-76865660 None:intergenic
TTCCTCTCACTCCAACCCCT+TGG 0.538527 5.4:+76866165 MS.gene020912:CDS
ACTTGAGGAATGATGGAAGC+AGG 0.539819 5.4:-76865666 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 5.4:-76866167 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 5.4:+76866119 MS.gene020912:CDS
AAGCATTTCCAAAAGAGGAT+GGG 0.563423 5.4:-76866452 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 5.4:+76865702 MS.gene020912:CDS
GGATGAAAACGGAAACCTGC+TGG 0.571341 5.4:-76865585 None:intergenic
TGTGTCGCATATTTCTGAAG+AGG 0.578122 5.4:+76866280 MS.gene020912:CDS
TACAGAGGCAAACCACCTCA+TGG 0.581454 5.4:+76866103 MS.gene020912:CDS
ATGTTCATTTGTGATTGAGG+AGG 0.585375 5.4:-76866403 None:intergenic
TACAAACTCTGCTTACTGGA+AGG 0.607198 5.4:+76866000 MS.gene020912:CDS
CGCATATTTCTGAAGAGGAG+AGG 0.611502 5.4:+76866285 MS.gene020912:CDS
TCAGTTCTTGAACCATGAGG+TGG 0.615010 5.4:-76866115 None:intergenic
TATATACCAGGTAAATCCCA+AGG 0.628388 5.4:-76865708 None:intergenic
GGTGAAGTAAGATTGCCAGC+AGG 0.635653 5.4:+76865570 MS.gene020912:CDS
GACTTGCGAAGATCAACTTG+AGG 0.662987 5.4:-76865681 None:intergenic
TAGGTGATATCGAACAAGAG+AGG 0.689390 5.4:+76865921 MS.gene020912:intron
ATTTCTGAAGAGGAGAGGTG+AGG 0.700060 5.4:+76866290 MS.gene020912:CDS
CAATCAGTTCTTGAACCATG+AGG 0.707588 5.4:-76866118 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATATTAATATGAATGAATT+GGG + chr5.4:76866233-76866252 MS.gene020912:intron 15.0%
!! TCTTAATTTATAATGAAACA+CGG + chr5.4:76865752-76865771 MS.gene020912:intron 15.0%
!! TGATATTAATATGAATGAAT+TGG + chr5.4:76866232-76866251 MS.gene020912:intron 15.0%
!! TTAAGAAAAAAGAAAAGAAA+AGG - chr5.4:76865738-76865757 None:intergenic 15.0%
! AAATTCAGAGAAAGAAAGAA+AGG - chr5.4:76866207-76866226 None:intergenic 25.0%
!! TGTTCAATATTTGAAGTGTA+AGG + chr5.4:76865626-76865645 MS.gene020912:CDS 25.0%
!!! GTTGTTTTCTATGATTTCTT+GGG + chr5.4:76866351-76866370 MS.gene020912:CDS 25.0%
TTCATGTTCATTTGTGATTG+AGG - chr5.4:76866409-76866428 None:intergenic 30.0%
! AGTTTGTAGTTCTGTTAGAT+TGG - chr5.4:76865988-76866007 None:intergenic 30.0%
! ATGGATTTTGTGAAGAAGAA+TGG + chr5.4:76865549-76865568 MS.gene020912:CDS 30.0%
! GGTTTTGCAGAATGAAAATT+GGG + chr5.4:76866254-76866273 MS.gene020912:intron 30.0%
!! GGTTGTTTTCTATGATTTCT+TGG + chr5.4:76866350-76866369 MS.gene020912:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + chr5.4:76866088-76866107 MS.gene020912:CDS 30.0%
AAGATCAACTTGAGGAATGA+TGG - chr5.4:76865676-76865695 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG - chr5.4:76866455-76866474 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG - chr5.4:76865609-76865628 None:intergenic 35.0%
ATGTTCATTTGTGATTGAGG+AGG - chr5.4:76866406-76866425 None:intergenic 35.0%
CTGACACCAACACATATAAT+CGG - chr5.4:76865813-76865832 None:intergenic 35.0%
CTTCATCTGTTGGATGAAAA+CGG - chr5.4:76865599-76865618 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG - chr5.4:76866456-76866475 None:intergenic 35.0%
TAGACGTAGTTATCATGTCT+CGG - chr5.4:76865849-76865868 None:intergenic 35.0%
TATATACCAGGTAAATCCCA+AGG - chr5.4:76865711-76865730 None:intergenic 35.0%
TCAGAGAAAGAAAGAAAGGA+AGG - chr5.4:76866203-76866222 None:intergenic 35.0%
TTGGTTCACATTTGGATACT+TGG - chr5.4:76865969-76865988 None:intergenic 35.0%
! AGAAAAGGTGCATATATACC+AGG - chr5.4:76865723-76865742 None:intergenic 35.0%
! CTGTTAGATTGGTTCACATT+TGG - chr5.4:76865977-76865996 None:intergenic 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG + chr5.4:76866253-76866272 MS.gene020912:intron 35.0%
! TGAGTGTGTGTTGTTCTATT+AGG + chr5.4:76865902-76865921 MS.gene020912:intron 35.0%
AAGGAAGAAAGACTGACCAA+GGG - chr5.4:76866184-76866203 None:intergenic 40.0%
CAATCAGTTCTTGAACCATG+AGG - chr5.4:76866121-76866140 None:intergenic 40.0%
CTACTACATGCAATGTCGTA+TGG + chr5.4:76865872-76865891 MS.gene020912:intron 40.0%
CTCATGGTTCAAGAACTGAT+TGG + chr5.4:76866119-76866138 MS.gene020912:CDS 40.0%
GAACTACAAACTCTGCTTAC+TGG + chr5.4:76865996-76866015 MS.gene020912:CDS 40.0%
GTCAATGTCTATGTTGTGTC+TGG - chr5.4:76865781-76865800 None:intergenic 40.0%
TACAAACTCTGCTTACTGGA+AGG + chr5.4:76866000-76866019 MS.gene020912:CDS 40.0%
TAGGTGATATCGAACAAGAG+AGG + chr5.4:76865921-76865940 MS.gene020912:intron 40.0%
TTCATTTGTGATTGAGGAGG+AGG - chr5.4:76866403-76866422 None:intergenic 40.0%
! GAATGATGGAAGCAGGTAAA+GGG - chr5.4:76865662-76865681 None:intergenic 40.0%
! TCGACACCGATTATATGTGT+TGG + chr5.4:76865804-76865823 MS.gene020912:intron 40.0%
! TGTGTCGCATATTTCTGAAG+AGG + chr5.4:76866280-76866299 MS.gene020912:CDS 40.0%
!! ATATGTGTTGGTGTCAGACA+TGG + chr5.4:76865816-76865835 MS.gene020912:intron 40.0%
AAGACGACTCGTGAAGTTGT+TGG + chr5.4:76866058-76866077 MS.gene020912:CDS 45.0%
AGGAAGAAAGACTGACCAAG+GGG - chr5.4:76866183-76866202 None:intergenic 45.0%
ATCTTCGCAAGTCTGATCCT+TGG + chr5.4:76865691-76865710 MS.gene020912:CDS 45.0%
GAAGGAAGAAAGACTGACCA+AGG - chr5.4:76866185-76866204 None:intergenic 45.0%
GACTTGCGAAGATCAACTTG+AGG - chr5.4:76865684-76865703 None:intergenic 45.0%
TCAGTTCTTGAACCATGAGG+TGG - chr5.4:76866118-76866137 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG + chr5.4:76865702-76865721 MS.gene020912:CDS 45.0%
TCTTCGCAAGTCTGATCCTT+GGG + chr5.4:76865692-76865711 MS.gene020912:CDS 45.0%
TTACTGGAAGGCAACTGGTT+TGG + chr5.4:76866012-76866031 MS.gene020912:CDS 45.0%
! AACTCACTCCCATCCTCTTT+TGG + chr5.4:76866444-76866463 MS.gene020912:CDS 45.0%
! ACTTGAGGAATGATGGAAGC+AGG - chr5.4:76865669-76865688 None:intergenic 45.0%
! ATTTCTGAAGAGGAGAGGTG+AGG + chr5.4:76866290-76866309 MS.gene020912:CDS 45.0%
! CGCATATTTCTGAAGAGGAG+AGG + chr5.4:76866285-76866304 MS.gene020912:CDS 45.0%
! CTCAGCTTCAAGTTCGAAAG+TGG + chr5.4:76866329-76866348 MS.gene020912:CDS 45.0%
! GGAATGATGGAAGCAGGTAA+AGG - chr5.4:76865663-76865682 None:intergenic 45.0%
AGAAAGACTGACCAAGGGGT+TGG - chr5.4:76866179-76866198 None:intergenic 50.0%
GGATGAAAACGGAAACCTGC+TGG - chr5.4:76865588-76865607 None:intergenic 50.0%
GGTGAAGTAAGATTGCCAGC+AGG + chr5.4:76865570-76865589 MS.gene020912:CDS 50.0%
GGTTGGAGTGAGAGGAAGTT+AGG - chr5.4:76866162-76866181 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG + chr5.4:76866103-76866122 MS.gene020912:CDS 50.0%
TCTGCTTACTGGAAGGCAAC+TGG + chr5.4:76866007-76866026 MS.gene020912:CDS 50.0%
TTCCTCTCACTCCAACCCCT+TGG + chr5.4:76866165-76866184 MS.gene020912:CDS 55.0%
GACCAAGGGGTTGGAGTGAG+AGG - chr5.4:76866170-76866189 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 76865549 76866476 76865549 ID=MS.gene020912
chr5.4 mRNA 76865549 76866476 76865549 ID=MS.gene020912.t1;Parent=MS.gene020912
chr5.4 exon 76865549 76865723 76865549 ID=MS.gene020912.t1.exon1;Parent=MS.gene020912.t1
chr5.4 CDS 76865549 76865723 76865549 ID=cds.MS.gene020912.t1;Parent=MS.gene020912.t1
chr5.4 exon 76865924 76866186 76865924 ID=MS.gene020912.t1.exon2;Parent=MS.gene020912.t1
chr5.4 CDS 76865924 76866186 76865924 ID=cds.MS.gene020912.t1;Parent=MS.gene020912.t1
chr5.4 exon 76866264 76866476 76866264 ID=MS.gene020912.t1.exon3;Parent=MS.gene020912.t1
chr5.4 CDS 76866264 76866476 76866264 ID=cds.MS.gene020912.t1;Parent=MS.gene020912.t1
Gene Sequence

>MS.gene020912

ATGGATTTTGTGAAGAAGAATGGTGAAGTAAGATTGCCAGCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATATTTGAAGTGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTCAAGTTGATCTTCGCAAGTCTGATCCTTGGGATTTACCTGGTATATATGCACCTTTTCTTTTCTTTTTTCTTAATTTATAATGAAACACGGACACCAGACACAACATAGACATTGACATGTCGACACCGATTATATGTGTTGGTGTCAGACATGGTCTGATACCGAGACATGATAACTACGTCTACTACTACTACATGCAATGTCGTATGGATTAATTTGAGTGTGTGTTGTTCTATTAGGTGATATCGAACAAGAGAGGTACTTTTTCAGTACTAAAGAAGCCAAGTATCCAAATGTGAACCAATCTAACAGAACTACAAACTCTGCTTACTGGAAGGCAACTGGTTTGGACAAACAAATCATGAATTCTTCGAAGACGACTCGTGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTAACTTCCTCTCACTCCAACCCCTTGGTCAGTCTTTCTTCCTTCCTTTCTTTCTTTCTCTGAATTTGTAATTGATATTAATATGAATGAATTGGGTTTTGCAGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGGTGAGGTGAAGAAGAAGCAGAACTCAGCTTCAAGTTCGAAAGTGGTTGTTTTCTATGATTTCTTGGGAGAGAAGAAGAACAATACTGATGCATCCTCCTCCTCAATCACAAATGAACATGAAAATGAAGACAGCAGTAACTCACTCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MS.gene020912.t1

MDFVKKNGEVRLPAGFRFHPTDEELVVQYLKCKVFSFPLPASIIPQVDLRKSDPWDLPGDIEQERYFFSTKEAKYPNVNQSNRTTNSAYWKATGLDKQIMNSSKTTREVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGEVKKKQNSASSSKVVVFYDFLGEKKNNTDASSSSITNEHENEDSSNSLPSSFGNA