AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020913

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020913.t1 MTR_7g005280 80.000 255 25 6 1 231 4 256 8.03e-134 377
MS.gene020913.t1 MTR_8g099750 59.091 176 58 5 1 166 4 175 3.30e-68 209
MS.gene020913.t1 MTR_3g098810 59.091 176 61 3 1 166 4 178 5.75e-67 207
MS.gene020913.t1 MTR_3g098810 61.745 149 55 2 1 148 4 151 1.85e-59 185
MS.gene020913.t1 MTR_4g081870 55.030 169 62 4 4 162 1 165 6.22e-57 182
MS.gene020913.t1 MTR_7g085220 47.917 192 77 4 9 185 5 188 1.66e-56 183
MS.gene020913.t1 MTR_2g080010 51.010 198 68 7 12 184 15 208 1.03e-55 181
MS.gene020913.t1 MTR_5g041940 56.250 160 56 3 10 159 1 156 1.45e-55 178
MS.gene020913.t1 MTR_4g089135 53.107 177 52 4 11 158 14 188 2.77e-54 177
MS.gene020913.t1 MTR_7g070140 54.857 175 27 3 57 231 12 134 8.87e-53 167
MS.gene020913.t1 MTR_2157s0010 53.086 162 60 4 12 158 8 168 1.02e-52 171
MS.gene020913.t1 MTR_7g100990 52.201 159 64 4 7 155 6 162 3.06e-52 172
MS.gene020913.t1 MTR_2g064090 41.152 243 109 8 10 224 4 240 5.79e-52 171
MS.gene020913.t1 MTR_3g109340 48.370 184 83 4 9 182 19 200 2.19e-51 170
MS.gene020913.t1 MTR_3g109340 48.108 185 83 4 9 182 19 201 3.87e-51 170
MS.gene020913.t1 MTR_3g064580 53.977 176 63 6 10 173 4 173 4.80e-51 176
MS.gene020913.t1 MTR_2g093810 45.098 204 94 7 12 201 14 213 8.57e-51 168
MS.gene020913.t1 MTR_3g088110 54.375 160 59 4 9 159 4 158 1.22e-50 166
MS.gene020913.t1 MTR_4g108760 44.976 209 89 6 5 191 10 214 3.27e-50 167
MS.gene020913.t1 MTR_5g021710 48.538 171 77 4 9 172 5 171 5.78e-50 166
MS.gene020913.t1 MTR_4g036030 52.564 156 63 4 11 159 6 157 9.30e-50 166
MS.gene020913.t1 MTR_1g008740 50.838 179 71 5 9 181 24 191 1.02e-49 166
MS.gene020913.t1 MTR_4g035590 54.839 155 58 5 12 159 8 157 1.08e-49 166
MS.gene020913.t1 MTR_1g008740 50.838 179 71 5 9 181 10 177 1.11e-49 166
MS.gene020913.t1 MTR_6g084430 51.948 154 66 3 9 158 2 151 1.69e-49 164
MS.gene020913.t1 MTR_2g062730 48.171 164 75 3 3 159 1 161 2.48e-49 165
MS.gene020913.t1 MTR_3g435150 48.824 170 75 3 3 164 7 172 4.33e-49 163
MS.gene020913.t1 MTR_5g012080 49.682 157 68 3 11 159 6 159 4.82e-49 164
MS.gene020913.t1 MTR_7g085260 50.898 167 71 4 3 158 5 171 7.06e-49 164
MS.gene020913.t1 MTR_7g070150 73.043 115 7 3 100 213 1 92 7.10e-49 155
MS.gene020913.t1 MTR_4g101680 50.303 165 71 3 11 168 6 166 9.17e-49 164
MS.gene020913.t1 MTR_8g076110 50.968 155 65 4 12 159 6 156 1.45e-48 162
MS.gene020913.t1 MTR_3g070030 50.595 168 68 5 7 164 14 176 1.56e-48 163
MS.gene020913.t1 MTR_5g076850 52.830 159 59 4 10 158 4 156 2.41e-48 168
MS.gene020913.t1 MTR_2g079990 52.866 157 64 3 8 158 12 164 5.35e-48 161
MS.gene020913.t1 MTR_6g012670 47.337 169 77 4 4 164 12 176 6.88e-48 160
MS.gene020913.t1 MTR_6g477900 47.904 167 74 4 10 168 4 165 4.77e-47 155
MS.gene020913.t1 MTR_2g078700 49.383 162 72 3 9 162 20 179 4.77e-47 160
MS.gene020913.t1 MTR_1g096430 49.045 157 69 3 9 158 4 156 7.72e-47 158
MS.gene020913.t1 MTR_8g094580 47.701 174 73 5 7 169 2 168 9.60e-47 156
MS.gene020913.t1 MTR_1g069805 39.819 221 107 6 12 224 10 212 1.18e-46 156
MS.gene020913.t1 MTR_8g024480 47.953 171 67 4 7 159 10 176 1.58e-46 159
MS.gene020913.t1 MTR_8g059170 52.532 158 63 4 9 158 11 164 3.06e-46 156
MS.gene020913.t1 MTR_6g032770 46.429 168 80 3 5 164 11 176 5.92e-46 157
MS.gene020913.t1 MTR_5g014300 44.809 183 89 3 8 180 2 182 7.22e-46 155
MS.gene020913.t1 MTR_3g096920 43.069 202 79 4 7 199 2 176 3.14e-45 152
MS.gene020913.t1 MTR_3g093040 38.117 223 106 6 10 224 106 304 9.33e-45 152
MS.gene020913.t1 MTR_7g097090 50.000 148 68 3 12 156 10 154 1.35e-44 151
MS.gene020913.t1 MTR_3g093050 41.935 217 99 6 12 219 22 220 1.53e-44 157
MS.gene020913.t1 MTR_3g093050 41.935 217 99 6 12 219 22 220 2.07e-44 157
MS.gene020913.t1 MTR_2g068920 46.286 175 74 4 3 159 13 185 2.21e-44 150
MS.gene020913.t1 MTR_2g068880 46.199 171 73 3 4 156 15 184 2.55e-44 151
MS.gene020913.t1 MTR_7g011120 38.951 267 112 9 7 228 3 263 2.82e-44 150
MS.gene020913.t1 MTR_7g011130 46.111 180 70 5 7 164 14 188 3.00e-44 152
MS.gene020913.t1 MTR_2g064470 47.531 162 66 5 9 160 8 160 5.53e-44 150
MS.gene020913.t1 MTR_5g040420 48.780 164 67 4 9 158 12 172 7.92e-44 151
MS.gene020913.t1 MTR_5g090970 48.193 166 70 5 5 156 12 175 8.77e-44 149
MS.gene020913.t1 MTR_2g079990 54.286 140 57 2 8 144 12 147 1.04e-43 151
MS.gene020913.t1 MTR_3g116070 53.147 143 61 4 9 147 20 160 1.42e-43 150
MS.gene020913.t1 MTR_8g467490 39.574 235 117 7 9 223 12 241 1.76e-43 150
MS.gene020913.t1 MTR_4g098630 45.143 175 83 4 12 176 6 177 1.79e-43 149
MS.gene020913.t1 MTR_5g090970 47.904 167 70 5 5 156 12 176 2.53e-43 148
MS.gene020913.t1 MTR_5g069030 41.441 222 94 7 11 219 24 222 9.86e-43 152
MS.gene020913.t1 MTR_3g070040 46.061 165 78 3 7 164 3 163 4.82e-42 145
MS.gene020913.t1 MTR_6g011860 46.914 162 68 4 12 158 15 173 1.39e-41 145
MS.gene020913.t1 MTR_3g096140 46.061 165 71 5 15 168 10 167 1.55e-41 142
MS.gene020913.t1 MTR_3g096920 53.285 137 56 2 7 140 2 133 9.93e-41 142
MS.gene020913.t1 MTR_3g096140 46.108 167 74 5 15 171 10 170 1.63e-40 142
MS.gene020913.t1 MTR_1g090720 48.538 171 68 4 12 167 42 207 4.74e-40 143
MS.gene020913.t1 MTR_1g090723 47.531 162 72 4 15 167 11 168 5.17e-40 145
MS.gene020913.t1 MTR_0036s0150 47.826 161 72 4 15 167 8 164 9.27e-40 143
MS.gene020913.t1 MTR_1g090723 47.205 161 73 4 15 167 11 167 1.02e-39 144
MS.gene020913.t1 MTR_1g097300 46.341 164 72 4 15 168 22 179 1.36e-39 143
MS.gene020913.t1 MTR_1g090723 47.205 161 73 4 15 167 11 167 1.47e-39 144
MS.gene020913.t1 MTR_8g063550 43.452 168 79 4 11 168 5 166 3.94e-38 135
MS.gene020913.t1 MTR_8g063550 43.452 168 79 4 11 168 5 166 1.47e-37 136
MS.gene020913.t1 MTR_8g063550 43.452 168 79 4 11 168 5 166 1.51e-37 136
MS.gene020913.t1 MTR_4g075980 45.098 153 77 4 9 158 13 161 1.26e-36 130
MS.gene020913.t1 MTR_2g086880 44.828 145 68 3 15 155 21 157 1.75e-36 134
MS.gene020913.t1 MTR_2g086880 44.828 145 68 3 15 155 21 157 2.61e-36 134
MS.gene020913.t1 MTR_8g023840 45.333 150 71 5 12 155 11 155 2.88e-36 132
MS.gene020913.t1 MTR_4g134460 45.342 161 78 5 9 165 52 206 3.99e-36 132
MS.gene020913.t1 MTR_8g093580 42.262 168 81 4 11 168 5 166 1.15e-35 132
MS.gene020913.t1 MTR_4g094302 39.521 167 84 4 12 169 11 169 1.02e-31 115
MS.gene020913.t1 MTR_3g096140 43.137 153 71 5 29 171 3 149 1.08e-31 118
MS.gene020913.t1 MTR_4g094302 43.411 129 62 3 12 138 11 130 2.75e-30 110
MS.gene020913.t1 MTR_8g023860 38.816 152 82 5 11 156 11 157 7.35e-30 115
MS.gene020913.t1 MTR_2g086690 35.096 208 107 7 13 196 5 208 2.60e-29 110
MS.gene020913.t1 MTR_8g023930 38.150 173 93 6 12 178 24 188 1.94e-28 112
MS.gene020913.t1 MTR_4g052620 40.000 160 79 6 12 157 5 161 4.87e-28 107
MS.gene020913.t1 MTR_8g023900 38.037 163 90 5 12 168 12 169 6.23e-28 110
MS.gene020913.t1 MTR_8g023900 38.012 171 92 6 14 178 195 357 2.73e-27 108
MS.gene020913.t1 MTR_8g094580 51.429 105 39 3 62 159 6 105 2.78e-27 104
MS.gene020913.t1 MTR_8g093790 38.125 160 75 6 10 166 8 146 9.79e-27 102
MS.gene020913.t1 MTR_8g023880 40.212 189 71 10 12 177 7 176 3.90e-26 102
MS.gene020913.t1 MTR_7g105170 29.956 227 129 9 12 217 4 221 1.79e-23 95.1
MS.gene020913.t1 MTR_5g061450 78.667 75 12 1 157 231 14 84 2.28e-23 90.1
MS.gene020913.t1 MTR_5g061420 78.667 75 12 1 157 231 14 84 1.43e-22 88.2
MS.gene020913.t1 MTR_7g083370 31.690 142 86 4 7 143 5 140 5.95e-19 80.5
MS.gene020913.t1 MTR_7g083360 34.074 135 78 5 7 136 5 133 2.22e-18 79.3
MS.gene020913.t1 MTR_3g096400 32.544 169 78 7 10 156 5 159 1.90e-17 78.2
MS.gene020913.t1 MTR_7g083330 34.848 132 75 5 10 136 16 141 5.61e-17 76.6
MS.gene020913.t1 MTR_1g045470 34.247 146 81 6 20 154 13 154 2.18e-14 71.2
MS.gene020913.t1 MTR_4g078875 33.557 149 74 7 12 140 48 191 3.37e-14 70.5
MS.gene020913.t1 MTR_2g014680 29.915 234 126 12 4 209 41 264 6.56e-14 70.1
MS.gene020913.t1 MTR_7g116460 32.432 148 85 6 18 154 11 154 5.18e-13 65.9
MS.gene020913.t1 MTR_4g088245 29.167 168 94 8 12 160 68 229 5.02e-12 64.7
MS.gene020913.t1 MTR_8g069160 31.081 148 78 7 12 140 68 210 7.00e-12 63.5
MS.gene020913.t1 MTR_2g090735 32.215 149 71 8 12 138 49 189 1.33e-11 63.2
MS.gene020913.t1 MTR_8g102240 30.058 173 89 8 12 158 47 213 1.55e-11 63.5
MS.gene020913.t1 MTR_8g102240 30.058 173 89 8 12 158 47 213 1.55e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020913.t1 AT5G13180 59.048 210 77 3 7 209 9 216 3.07e-85 253
MS.gene020913.t1 AT2G33480 70.253 158 42 2 4 160 7 160 1.37e-80 242
MS.gene020913.t1 AT2G33480 69.375 160 42 2 4 160 7 162 2.34e-80 242
MS.gene020913.t1 AT5G39610 43.925 214 102 5 1 200 9 218 1.37e-55 179
MS.gene020913.t1 AT1G69490 56.442 163 56 4 12 164 9 166 9.17e-55 176
MS.gene020913.t1 AT3G04070 54.819 166 61 4 12 163 10 175 2.46e-54 177
MS.gene020913.t1 AT1G61110 56.140 171 50 5 8 158 12 177 8.82e-54 176
MS.gene020913.t1 AT1G77450 46.569 204 93 5 3 196 1 198 1.90e-53 172
MS.gene020913.t1 AT5G61430 52.353 170 69 5 3 164 7 172 5.50e-53 174
MS.gene020913.t1 AT3G04070 50.549 182 60 4 12 163 10 191 3.01e-52 172
MS.gene020913.t1 AT5G07680 50.595 168 71 4 5 164 10 173 3.18e-52 172
MS.gene020913.t1 AT1G65910 45.366 205 89 6 10 204 4 195 4.51e-52 178
MS.gene020913.t1 AT5G07680 52.795 161 64 4 12 164 3 159 7.72e-52 170
MS.gene020913.t1 AT2G24430 55.484 155 62 3 9 158 13 165 8.91e-52 170
MS.gene020913.t1 AT2G24430 55.484 155 62 3 9 158 13 165 8.91e-52 170
MS.gene020913.t1 AT1G33280 53.247 154 62 3 12 159 8 157 1.82e-51 169
MS.gene020913.t1 AT4G27410 47.753 178 83 3 9 180 11 184 5.18e-51 167
MS.gene020913.t1 AT3G15510 55.000 160 53 4 16 158 21 178 6.06e-51 169
MS.gene020913.t1 AT1G54330 55.128 156 57 3 10 158 4 153 1.04e-50 167
MS.gene020913.t1 AT4G10350 52.866 157 61 4 12 159 9 161 1.08e-50 168
MS.gene020913.t1 AT1G12260 51.875 160 66 4 12 164 7 162 1.48e-50 168
MS.gene020913.t1 AT3G04060 54.140 157 61 4 10 158 18 171 1.97e-50 167
MS.gene020913.t1 AT1G12260 51.553 161 67 4 11 164 6 162 4.60e-50 168
MS.gene020913.t1 AT3G18400 52.174 161 68 4 9 164 2 158 4.72e-50 166
MS.gene020913.t1 AT5G17260 51.266 158 64 3 10 158 4 157 5.22e-50 170
MS.gene020913.t1 AT2G18060 50.303 165 71 4 12 169 9 169 1.33e-49 166
MS.gene020913.t1 AT2G18060 50.303 165 71 4 12 169 9 169 1.33e-49 166
MS.gene020913.t1 AT3G03200 50.000 158 66 3 10 158 4 157 1.60e-49 168
MS.gene020913.t1 AT5G18270 51.592 157 65 3 10 158 19 172 4.32e-49 164
MS.gene020913.t1 AT1G52880 54.140 157 58 2 16 158 21 177 4.97e-49 163
MS.gene020913.t1 AT5G66300 50.299 167 71 4 1 159 1 163 5.29e-49 162
MS.gene020913.t1 AT1G76420 52.597 154 64 4 9 156 19 169 5.75e-49 164
MS.gene020913.t1 AT4G36160 51.515 165 67 5 12 167 10 170 6.46e-49 164
MS.gene020913.t1 AT4G36160 51.515 165 67 5 12 167 10 170 6.46e-49 164
MS.gene020913.t1 AT1G62700 51.875 160 66 4 11 163 6 161 7.39e-49 165
MS.gene020913.t1 AT1G62700 51.875 160 66 4 11 163 6 161 7.39e-49 165
MS.gene020913.t1 AT4G36160 51.515 165 67 5 12 167 14 174 7.46e-49 164
MS.gene020913.t1 AT5G18270 51.592 157 65 3 10 158 19 172 8.48e-49 163
MS.gene020913.t1 AT5G62380 53.165 158 61 6 10 159 5 157 9.08e-49 163
MS.gene020913.t1 AT5G62380 53.165 158 61 6 10 159 5 157 9.08e-49 163
MS.gene020913.t1 AT1G33060 51.613 155 63 3 12 158 24 174 9.21e-49 169
MS.gene020913.t1 AT1G33060 51.613 155 63 3 12 158 24 174 9.71e-49 169
MS.gene020913.t1 AT1G79580 49.693 163 71 3 4 159 9 167 9.82e-49 164
MS.gene020913.t1 AT1G79580 49.693 163 71 3 4 159 9 167 9.82e-49 164
MS.gene020913.t1 AT1G79580 49.693 163 71 3 4 159 9 167 9.82e-49 164
MS.gene020913.t1 AT1G79580 49.693 163 71 3 4 159 9 167 9.82e-49 164
MS.gene020913.t1 AT1G79580 49.693 163 71 3 4 159 9 167 9.82e-49 164
MS.gene020913.t1 AT3G15170 44.091 220 98 8 9 211 17 228 1.00e-48 162
MS.gene020913.t1 AT3G29035 47.222 180 81 4 4 175 16 189 1.73e-48 162
MS.gene020913.t1 AT4G27410 43.590 195 83 3 9 180 11 201 2.23e-48 161
MS.gene020913.t1 AT3G17730 49.682 157 67 3 10 158 4 156 3.40e-48 159
MS.gene020913.t1 AT4G35580 50.898 167 67 4 12 167 9 171 6.69e-48 165
MS.gene020913.t1 AT4G35580 50.898 167 67 4 12 167 9 171 7.55e-48 165
MS.gene020913.t1 AT4G35580 50.898 167 67 4 12 167 9 171 7.75e-48 165
MS.gene020913.t1 AT3G10500 51.515 165 68 3 12 168 9 169 2.62e-47 164
MS.gene020913.t1 AT1G01720 50.299 167 68 4 10 166 5 166 3.57e-47 157
MS.gene020913.t1 AT5G46590 50.000 162 65 4 8 158 2 158 3.99e-47 157
MS.gene020913.t1 AT5G04410 52.121 165 67 3 12 168 9 169 4.98e-47 163
MS.gene020913.t1 AT5G53950 50.968 155 66 3 12 158 17 169 6.43e-47 159
MS.gene020913.t1 AT5G63790 49.405 168 69 3 3 159 41 203 7.80e-47 157
MS.gene020913.t1 AT5G63790 49.405 168 69 3 3 159 51 213 9.99e-47 157
MS.gene020913.t1 AT1G52890 49.383 162 72 3 9 164 11 168 1.72e-46 157
MS.gene020913.t1 AT1G56010 47.879 165 72 4 9 163 16 176 3.12e-46 156
MS.gene020913.t1 AT2G46770 46.286 175 68 4 7 159 11 181 3.65e-46 157
MS.gene020913.t1 AT1G71930 50.000 154 66 4 12 158 9 158 4.31e-46 156
MS.gene020913.t1 AT1G71930 50.000 154 66 4 12 158 9 158 4.31e-46 156
MS.gene020913.t1 AT3G12977 48.148 162 73 4 9 163 15 172 5.07e-46 154
MS.gene020913.t1 AT5G08790 51.534 163 61 5 9 159 4 160 1.29e-45 153
MS.gene020913.t1 AT3G61910 45.402 174 69 5 7 158 6 175 2.17e-45 154
MS.gene020913.t1 AT2G33480 65.421 107 30 2 57 160 3 105 2.29e-45 150
MS.gene020913.t1 AT3G10490 49.390 164 70 3 12 166 27 186 3.10e-45 151
MS.gene020913.t1 AT3G10480 50.000 164 69 3 12 166 27 186 4.28e-45 156
MS.gene020913.t1 AT1G32770 44.767 172 72 4 7 159 11 178 5.83e-45 154
MS.gene020913.t1 AT3G15500 49.682 157 69 3 9 159 11 163 7.35e-45 152
MS.gene020913.t1 AT3G10480 49.693 163 70 3 12 166 27 185 5.11e-44 153
MS.gene020913.t1 AT5G46590 48.993 149 64 3 8 149 2 145 8.49e-44 149
MS.gene020913.t1 AT4G17980 45.963 161 75 3 8 158 2 160 2.54e-43 147
MS.gene020913.t1 AT3G10490 49.390 164 70 3 12 166 27 186 2.74e-43 151
MS.gene020913.t1 AT4G17980 45.963 161 75 3 8 158 2 160 3.61e-43 147
MS.gene020913.t1 AT1G32510 41.304 230 111 6 12 220 6 232 2.59e-42 145
MS.gene020913.t1 AT5G39820 44.565 184 72 5 2 158 11 191 5.28e-42 145
MS.gene020913.t1 AT4G28530 46.154 169 69 5 11 160 9 174 4.70e-41 143
MS.gene020913.t1 AT1G34190 47.853 163 71 4 15 168 19 176 6.78e-41 147
MS.gene020913.t1 AT1G26870 38.961 231 115 8 9 216 14 241 2.60e-40 143
MS.gene020913.t1 AT2G17040 47.712 153 73 4 9 158 4 152 2.93e-40 139
MS.gene020913.t1 AT3G10480 41.624 197 69 3 12 166 27 219 3.39e-40 144
MS.gene020913.t1 AT3G12910 46.988 166 67 6 10 156 20 183 4.03e-40 140
MS.gene020913.t1 AT1G34180 46.914 162 74 3 15 168 19 176 5.09e-40 143
MS.gene020913.t1 AT5G24590 46.875 160 66 5 12 159 13 165 1.50e-39 141
MS.gene020913.t1 AT3G49530 42.222 180 85 5 12 183 13 181 1.56e-39 140
MS.gene020913.t1 AT3G49530 42.222 180 85 5 12 183 13 181 2.03e-39 141
MS.gene020913.t1 AT1G34180 46.914 162 74 3 15 168 19 176 2.10e-39 143
MS.gene020913.t1 AT1G34180 43.678 174 74 3 15 168 19 188 6.21e-39 140
MS.gene020913.t1 AT2G43000 47.742 155 69 5 9 156 16 165 7.15e-39 135
MS.gene020913.t1 AT1G34180 43.678 174 74 3 15 168 19 188 2.12e-38 140
MS.gene020913.t1 AT5G64060 42.604 169 85 3 8 168 2 166 6.21e-38 135
MS.gene020913.t1 AT5G09330 45.029 171 78 4 8 168 2 166 7.47e-38 137
MS.gene020913.t1 AT5G09330 45.029 171 78 4 8 168 2 166 7.47e-38 137
MS.gene020913.t1 AT5G09330 45.029 171 78 4 8 168 2 166 7.47e-38 137
MS.gene020913.t1 AT5G09330 45.029 171 78 4 8 168 2 166 7.47e-38 137
MS.gene020913.t1 AT5G09330 45.029 171 78 4 8 168 2 166 7.47e-38 137
MS.gene020913.t1 AT2G02450 47.097 155 73 5 15 165 54 203 9.74e-38 135
MS.gene020913.t1 AT2G02450 47.097 155 73 5 15 165 54 203 1.52e-37 135
MS.gene020913.t1 AT5G22290 39.344 183 96 5 15 193 24 195 1.08e-35 129
MS.gene020913.t1 AT3G44290 34.842 221 125 6 15 228 17 225 9.54e-35 124
MS.gene020913.t1 AT4G10350 57.732 97 34 2 66 159 22 114 1.11e-34 125
MS.gene020913.t1 AT2G27300 42.759 145 71 3 15 155 17 153 1.46e-33 123
MS.gene020913.t1 AT3G44290 34.862 218 123 6 15 225 17 222 5.77e-33 122
MS.gene020913.t1 AT5G61430 53.704 108 41 3 62 164 6 109 1.27e-32 119
MS.gene020913.t1 AT1G02230 41.341 179 85 8 13 184 4 169 2.00e-32 121
MS.gene020913.t1 AT5G14000 39.241 158 88 4 7 161 10 162 4.16e-32 116
MS.gene020913.t1 AT5G04395 41.781 146 68 2 9 138 25 169 4.95e-32 115
MS.gene020913.t1 AT1G32870 44.571 175 78 5 4 168 5 170 5.91e-32 122
MS.gene020913.t1 AT1G32870 44.571 175 78 5 4 168 5 170 6.00e-32 122
MS.gene020913.t1 AT1G32870 44.571 175 78 5 4 168 41 206 7.45e-32 122
MS.gene020913.t1 AT5G14000 40.816 147 80 3 7 150 10 152 8.09e-32 114
MS.gene020913.t1 AT1G56010 51.923 104 40 2 66 163 10 109 4.52e-31 115
MS.gene020913.t1 AT3G12977 53.922 102 39 3 66 163 22 119 1.25e-30 113
MS.gene020913.t1 AT1G02250 43.137 153 75 5 13 158 4 151 4.59e-30 115
MS.gene020913.t1 AT5G50820 35.417 192 106 5 2 184 7 189 5.85e-29 108
MS.gene020913.t1 AT5G64530 38.554 166 70 5 10 156 1 153 1.61e-28 106
MS.gene020913.t1 AT4G01550 37.778 180 93 6 10 183 2 168 5.19e-28 110
MS.gene020913.t1 AT5G64530 43.511 131 59 4 10 138 1 118 8.27e-28 103
MS.gene020913.t1 AT3G04420 38.562 153 81 4 13 158 4 150 8.83e-26 103
MS.gene020913.t1 AT3G04420 38.562 153 81 4 13 158 4 150 9.39e-26 102
MS.gene020913.t1 AT4G01540 39.333 150 77 6 15 155 7 151 1.78e-24 100
MS.gene020913.t1 AT4G01540 39.333 150 77 6 15 155 7 151 2.09e-24 100
MS.gene020913.t1 AT4G01540 39.216 153 79 6 15 158 7 154 2.18e-24 100
MS.gene020913.t1 AT4G01540 39.333 150 77 6 15 155 7 151 2.46e-24 100
MS.gene020913.t1 AT4G01520 38.158 152 80 6 13 155 5 151 2.49e-24 98.6
MS.gene020913.t1 AT3G44350 36.875 160 84 5 12 158 5 160 3.42e-24 97.1
MS.gene020913.t1 AT1G02220 38.994 159 79 6 13 164 4 151 5.65e-24 99.0
MS.gene020913.t1 AT5G22380 36.709 158 81 5 15 157 8 161 2.36e-23 94.4
MS.gene020913.t1 AT3G44350 38.298 141 74 4 12 143 5 141 1.73e-22 90.1
MS.gene020913.t1 AT2G18060 50.000 84 37 2 87 169 2 81 3.57e-22 92.4
MS.gene020913.t1 AT3G10490 50.562 89 36 2 82 166 2 86 3.72e-21 90.5
MS.gene020913.t1 AT3G10490 50.562 89 36 2 82 166 2 86 3.72e-21 90.5
MS.gene020913.t1 AT1G01010 32.663 199 106 8 14 191 5 196 1.06e-19 87.4
MS.gene020913.t1 AT4G28530 38.931 131 59 4 11 122 9 137 2.55e-19 85.1
MS.gene020913.t1 AT2G43000 48.276 87 37 3 74 156 5 87 5.39e-19 82.0
MS.gene020913.t1 AT3G55210 33.728 169 78 8 12 157 11 168 1.12e-16 77.4
MS.gene020913.t1 AT5G22290 41.509 106 51 4 88 193 2 96 5.10e-16 75.1
MS.gene020913.t1 AT3G56530 35.220 159 86 7 9 157 49 200 8.59e-16 75.5
MS.gene020913.t1 AT5G14000 56.604 53 23 0 7 59 10 62 7.59e-15 72.0
MS.gene020913.t1 AT5G41090 27.329 161 97 4 12 159 8 161 1.35e-14 70.5
MS.gene020913.t1 AT1G28470 33.333 168 83 10 12 158 77 236 4.76e-14 70.5
MS.gene020913.t1 AT4G29230 31.818 176 87 9 10 158 46 215 7.46e-14 70.5
MS.gene020913.t1 AT4G29230 31.818 176 87 9 10 158 45 214 7.89e-14 70.5
MS.gene020913.t1 AT4G29230 31.818 176 87 9 10 158 46 215 8.93e-14 70.1
MS.gene020913.t1 AT5G56620 33.750 160 69 8 10 138 41 194 1.27e-12 66.6
MS.gene020913.t1 AT5G56620 33.750 160 69 8 10 138 41 194 1.38e-12 66.6
MS.gene020913.t1 AT5G56620 33.750 160 69 8 10 138 41 194 1.51e-12 66.6
MS.gene020913.t1 AT4G28500 30.539 167 90 8 12 158 59 219 4.79e-12 64.7

Find 52 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCACTCCCATCCTCTTT+TGG 0.255864 5.4:+76885840 MS.gene020913:CDS
TGTTGTTCTATTAGGTGATA+TGG 0.294121 5.4:+76885259 MS.gene020913:intron
GAGCTACAAACTCTGGTTAC+TGG 0.345872 5.4:+76885345 MS.gene020913:CDS
CTGTTAGATCGGTTCCCGTT+TGG 0.351967 5.4:-76885323 None:intergenic
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 5.4:+76885059 MS.gene020913:CDS
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 5.4:+76885060 MS.gene020913:CDS
TTACTGGAAGGCAACTGGTT+TGG 0.413426 5.4:+76885361 MS.gene020913:CDS
AAGACGACTCGTGAAGTTGT+TGG 0.418647 5.4:+76885407 MS.gene020913:CDS
GAATGATGGAAGCGGGTAAA+GGG 0.423136 5.4:-76885027 None:intergenic
CTTCATCTGTTGGATGAAAA+CGG 0.429980 5.4:-76884964 None:intergenic
TCTGGTTACTGGAAGGCAAC+TGG 0.438388 5.4:+76885356 MS.gene020913:CDS
CCAATGTTGCTGCCACTGCT+TGG 0.457753 5.4:-76885699 None:intergenic
ACAACAAGTTCTTCATCTGT+TGG 0.464543 5.4:-76884974 None:intergenic
AAGATCAACTTGAGGAATGA+TGG 0.468508 5.4:-76885041 None:intergenic
TTCATTTGTGATTGAGGAGG+AGG 0.474326 5.4:-76885808 None:intergenic
CCAAGCAGTGGCAGCAACAT+TGG 0.482032 5.4:+76885699 MS.gene020913:CDS
TTCCTCTCACTCCAACCCCT+TGG 0.484311 5.4:+76885514 MS.gene020913:CDS
GGAATGATGGAAGCGGGTAA+AGG 0.497273 5.4:-76885028 None:intergenic
AAGAAGCGAAATATCCAAAC+GGG 0.502987 5.4:+76885309 MS.gene020913:CDS
TGTTCAATATTTGAAGCCTA+AGG 0.506309 5.4:+76884994 MS.gene020913:CDS
CTCAGCTTCGAGTTCAAAAG+TGG 0.508234 5.4:+76885740 MS.gene020913:CDS
GCTGTCTTCATTTGTGATTG+AGG 0.509175 5.4:-76885814 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 5.4:-76885508 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.518802 5.4:-76885849 None:intergenic
GGATTAAGCATTTCCAAAAG+AGG 0.521576 5.4:-76885853 None:intergenic
AGTTTGTAGCTCTGTTAGAT+CGG 0.532621 5.4:-76885334 None:intergenic
AAAGAAGCGAAATATCCAAA+CGG 0.540290 5.4:+76885308 MS.gene020913:CDS
AAAGGGAAAGAAAAGACCTT+AGG 0.544936 5.4:-76885010 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.548262 5.4:-76885516 None:intergenic
CTCATGGTTCAAGAACTGAT+TGG 0.548704 5.4:+76885468 MS.gene020913:CDS
AGAAAGACTGACCAAGGGGT+TGG 0.548887 5.4:-76885525 None:intergenic
TCTAACAGAGCTACAAACTC+TGG 0.560803 5.4:+76885338 MS.gene020913:CDS
AAGCATTTCCAAAAGAGGAT+GGG 0.563423 5.4:-76885848 None:intergenic
AATGGAGAAGAGACTGTGAA+AGG 0.563453 5.4:+76885669 MS.gene020913:CDS
TCTGATCCTTGGGATTTACC+TGG 0.570788 5.4:+76885070 MS.gene020913:CDS
GGATGAAAACGGAAACCTGC+TGG 0.571341 5.4:-76884953 None:intergenic
TGTGTCGCATATTTCTGAAG+AGG 0.578122 5.4:+76885631 MS.gene020913:CDS
GTCTTCATTTGTGATTGAGG+AGG 0.581319 5.4:-76885811 None:intergenic
TACAGAGGCAAACCACCTCA+TGG 0.581454 5.4:+76885452 MS.gene020913:CDS
ACTTGAGGAATGATGGAAGC+GGG 0.582789 5.4:-76885034 None:intergenic
AAAGGAGTGAAGCCAAGCAG+TGG 0.603258 5.4:+76885687 MS.gene020913:CDS
GGTGAAGTGAGATTGCCAGC+AGG 0.604676 5.4:+76884938 MS.gene020913:CDS
CGCATATTTCTGAAGAGGAG+AGG 0.611502 5.4:+76885636 MS.gene020913:CDS
TACATACCAGGTAAATCCCA+AGG 0.614952 5.4:-76885076 None:intergenic
TCAGTTCTTGAACCATGAGG+TGG 0.615010 5.4:-76885464 None:intergenic
TAGGTGATATGGAACAAAAG+AGG 0.616389 5.4:+76885270 MS.gene020913:intron
TACAAACTCTGGTTACTGGA+AGG 0.635081 5.4:+76885349 MS.gene020913:CDS
AACTTGAGGAATGATGGAAG+CGG 0.644118 5.4:-76885035 None:intergenic
CAGTGGCAGCAACATTGGTG+AGG 0.667609 5.4:+76885704 MS.gene020913:CDS
GACTTGCAAAGATCAACTTG+AGG 0.673094 5.4:-76885049 None:intergenic
ATATTTCTGAAGAGGAGAGG+TGG 0.674268 5.4:+76885639 MS.gene020913:CDS
CAATCAGTTCTTGAACCATG+AGG 0.707588 5.4:-76885467 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATATGAATGAATAT+TGG + chr5.4:76885583-76885602 MS.gene020913:intron 10.0%
!! TAATATTAATTACAAATTCA+GGG - chr5.4:76885569-76885588 None:intergenic 10.0%
!! TATTAATATGAATGAATATT+GGG + chr5.4:76885584-76885603 MS.gene020913:intron 10.0%
!! TTAATATTAATTACAAATTC+AGG - chr5.4:76885570-76885589 None:intergenic 10.0%
!! TGAACAAAATAGAAAAGAAA+AGG - chr5.4:76885102-76885121 None:intergenic 20.0%
!!! ATGAATTTTGTGAAGAATAA+TGG + chr5.4:76884917-76884936 MS.gene020913:CDS 20.0%
!!! GGTTTTTCAGAATGAAAATT+GGG + chr5.4:76885605-76885624 MS.gene020913:intron 25.0%
AAAGAAGCGAAATATCCAAA+CGG + chr5.4:76885308-76885327 MS.gene020913:CDS 30.0%
AAATTCAGGGAAAGAAAGAA+AGG - chr5.4:76885556-76885575 None:intergenic 30.0%
TAGTAGAAGTTATCATGTTC+CGG - chr5.4:76885201-76885220 None:intergenic 30.0%
TGTTGTTCTATTAGGTGATA+TGG + chr5.4:76885259-76885278 MS.gene020913:intron 30.0%
! TGTTCAATATTTGAAGCCTA+AGG + chr5.4:76884994-76885013 MS.gene020913:CDS 30.0%
!! GGGTTTTTCAGAATGAAAAT+TGG + chr5.4:76885604-76885623 MS.gene020913:intron 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG + chr5.4:76885437-76885456 MS.gene020913:CDS 30.0%
AAAGGGAAAGAAAAGACCTT+AGG - chr5.4:76885013-76885032 None:intergenic 35.0%
AAGAAAGAAAGACTGACCAA+GGG - chr5.4:76885533-76885552 None:intergenic 35.0%
AAGAAGCGAAATATCCAAAC+GGG + chr5.4:76885309-76885328 MS.gene020913:CDS 35.0%
AAGATCAACTTGAGGAATGA+TGG - chr5.4:76885044-76885063 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG - chr5.4:76885851-76885870 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG - chr5.4:76884977-76884996 None:intergenic 35.0%
CTTCATCTGTTGGATGAAAA+CGG - chr5.4:76884967-76884986 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG - chr5.4:76885852-76885871 None:intergenic 35.0%
TAGGTGATATGGAACAAAAG+AGG + chr5.4:76885270-76885289 MS.gene020913:intron 35.0%
! AGTTTGTAGCTCTGTTAGAT+CGG - chr5.4:76885337-76885356 None:intergenic 35.0%
! GAAAAGAAAAGGTACATACC+AGG - chr5.4:76885091-76885110 None:intergenic 35.0%
! TGAGTGTGTGTTGTTCTATT+AGG + chr5.4:76885251-76885270 MS.gene020913:intron 35.0%
AATGGAGAAGAGACTGTGAA+AGG + chr5.4:76885669-76885688 MS.gene020913:CDS 40.0%
AGAAAGAAAGACTGACCAAG+GGG - chr5.4:76885532-76885551 None:intergenic 40.0%
ATCTTTGCAAGTCTGATCCT+TGG + chr5.4:76885059-76885078 MS.gene020913:CDS 40.0%
CAAAGCACATACACAGACAT+CGG + chr5.4:76885149-76885168 MS.gene020913:intron 40.0%
CAATCAGTTCTTGAACCATG+AGG - chr5.4:76885470-76885489 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG + chr5.4:76885221-76885240 MS.gene020913:intron 40.0%
CTCATGGTTCAAGAACTGAT+TGG + chr5.4:76885468-76885487 MS.gene020913:CDS 40.0%
GAAGAAAGAAAGACTGACCA+AGG - chr5.4:76885534-76885553 None:intergenic 40.0%
GACTTGCAAAGATCAACTTG+AGG - chr5.4:76885052-76885071 None:intergenic 40.0%
GCTGTCTTCATTTGTGATTG+AGG - chr5.4:76885817-76885836 None:intergenic 40.0%
GTCTTCATTTGTGATTGAGG+AGG - chr5.4:76885814-76885833 None:intergenic 40.0%
TACAAACTCTGGTTACTGGA+AGG + chr5.4:76885349-76885368 MS.gene020913:CDS 40.0%
TACATACCAGGTAAATCCCA+AGG - chr5.4:76885079-76885098 None:intergenic 40.0%
TCTAACAGAGCTACAAACTC+TGG + chr5.4:76885338-76885357 MS.gene020913:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG + chr5.4:76885060-76885079 MS.gene020913:CDS 40.0%
TTCATTTGTGATTGAGGAGG+AGG - chr5.4:76885811-76885830 None:intergenic 40.0%
! AACTTGAGGAATGATGGAAG+CGG - chr5.4:76885038-76885057 None:intergenic 40.0%
! AGGAGAGGTGGTGTTAAAAA+TGG + chr5.4:76885651-76885670 MS.gene020913:CDS 40.0%
! ATATTTCTGAAGAGGAGAGG+TGG + chr5.4:76885639-76885658 MS.gene020913:CDS 40.0%
! TGTGTCGCATATTTCTGAAG+AGG + chr5.4:76885631-76885650 MS.gene020913:CDS 40.0%
AAGACGACTCGTGAAGTTGT+TGG + chr5.4:76885407-76885426 MS.gene020913:CDS 45.0%
ATCGACACTGACACAAACAC+CGG + chr5.4:76885179-76885198 MS.gene020913:intron 45.0%
GAGCTACAAACTCTGGTTAC+TGG + chr5.4:76885345-76885364 MS.gene020913:CDS 45.0%
TCAGTTCTTGAACCATGAGG+TGG - chr5.4:76885467-76885486 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG + chr5.4:76885070-76885089 MS.gene020913:CDS 45.0%
TTACTGGAAGGCAACTGGTT+TGG + chr5.4:76885361-76885380 MS.gene020913:CDS 45.0%
! AACTCACTCCCATCCTCTTT+TGG + chr5.4:76885840-76885859 MS.gene020913:CDS 45.0%
! ACTTGAGGAATGATGGAAGC+GGG - chr5.4:76885037-76885056 None:intergenic 45.0%
! CGCATATTTCTGAAGAGGAG+AGG + chr5.4:76885636-76885655 MS.gene020913:CDS 45.0%
! CTCAGCTTCGAGTTCAAAAG+TGG + chr5.4:76885740-76885759 MS.gene020913:CDS 45.0%
! GAATGATGGAAGCGGGTAAA+GGG - chr5.4:76885030-76885049 None:intergenic 45.0%
AAAGGAGTGAAGCCAAGCAG+TGG + chr5.4:76885687-76885706 MS.gene020913:CDS 50.0%
AGAAAGACTGACCAAGGGGT+TGG - chr5.4:76885528-76885547 None:intergenic 50.0%
GGATGAAAACGGAAACCTGC+TGG - chr5.4:76884956-76884975 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG + chr5.4:76885452-76885471 MS.gene020913:CDS 50.0%
TCTGGTTACTGGAAGGCAAC+TGG + chr5.4:76885356-76885375 MS.gene020913:CDS 50.0%
! CTGTTAGATCGGTTCCCGTT+TGG - chr5.4:76885326-76885345 None:intergenic 50.0%
! GGAATGATGGAAGCGGGTAA+AGG - chr5.4:76885031-76885050 None:intergenic 50.0%
CAGTGGCAGCAACATTGGTG+AGG + chr5.4:76885704-76885723 MS.gene020913:CDS 55.0%
CCAAGCAGTGGCAGCAACAT+TGG + chr5.4:76885699-76885718 MS.gene020913:CDS 55.0%
CCAATGTTGCTGCCACTGCT+TGG - chr5.4:76885702-76885721 None:intergenic 55.0%
GGTGAAGTGAGATTGCCAGC+AGG + chr5.4:76884938-76884957 MS.gene020913:CDS 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG - chr5.4:76885511-76885530 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG + chr5.4:76885514-76885533 MS.gene020913:CDS 55.0%
GACCAAGGGGTTGGAGTGAG+AGG - chr5.4:76885519-76885538 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 76884917 76885872 76884917 ID=MS.gene020913
chr5.4 mRNA 76884917 76885872 76884917 ID=MS.gene020913.t1;Parent=MS.gene020913
chr5.4 exon 76884917 76885091 76884917 ID=MS.gene020913.t1.exon1;Parent=MS.gene020913.t1
chr5.4 CDS 76884917 76885091 76884917 ID=cds.MS.gene020913.t1;Parent=MS.gene020913.t1
chr5.4 exon 76885273 76885535 76885273 ID=MS.gene020913.t1.exon2;Parent=MS.gene020913.t1
chr5.4 CDS 76885273 76885535 76885273 ID=cds.MS.gene020913.t1;Parent=MS.gene020913.t1
chr5.4 exon 76885615 76885872 76885615 ID=MS.gene020913.t1.exon3;Parent=MS.gene020913.t1
chr5.4 CDS 76885615 76885872 76885615 ID=cds.MS.gene020913.t1;Parent=MS.gene020913.t1
Gene Sequence

>MS.gene020913

ATGAATTTTGTGAAGAATAATGGTGAAGTGAGATTGCCAGCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATATTTGAAGCCTAAGGTCTTTTCTTTCCCTTTACCCGCTTCCATCATTCCTCAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGTACCTTTTCTTTTCTATTTTGTTCATTTATAATCATAACTTAACAAAGCACACAAAGCACATACACAGACATCGGACACAACATCGACACTGACACAAACACCGGAACATGATAACTTCTACTACTACTGCAAACAATGTCATGTGGATTAATTTGAGTGTGTGTTGTTCTATTAGGTGATATGGAACAAAAGAGGTACTTTTTCAGCACTAAAGAAGCGAAATATCCAAACGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAGGCAACTGGTTTGGACAAAGAAATCATGAATTCTTCGAAGACGACTCGTGAAGTTGTTGGTATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTCAGTCTTTCTTTCTTCCTTTCTTTCTTTCCCTGAATTTGTAATTAATATTAATATGAATGAATATTGGGTTTTTCAGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGGTGGTGTTAAAAATGGAGAAGAGACTGTGAAAGGAGTGAAGCCAAGCAGTGGCAGCAACATTGGTGAGGTGAAGAAGAAGAACTCAGCTTCGAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTCGCAGAGAAGAGCAATACTGATGCATCCTCCTCCTCAATCACAAATGAAGACAGCAGTAACTCACTCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MS.gene020913.t1

MNFVKNNGEVRLPAGFRFHPTDEELVVQYLKPKVFSFPLPASIIPQVDLCKSDPWDLPGDMEQKRYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKEIMNSSKTTREVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGGVKNGEETVKGVKPSSGSNIGEVKKKNSASSSKVVVFYDFFAEKSNTDASSSSITNEDSSNSLPSSFGNA