Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020924.t1 | AFK48577.1 | 85 | 552 | 50 | 2 | 2 | 552 | 13 | 532 | 4.40E-110 | 408.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020924.t1 | I3T7T5 | 85.0 | 552 | 50 | 2 | 2 | 552 | 13 | 532 | 3.1e-110 | 408.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene020924.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020924.t1 | MTR_5g097950 | 82.065 | 552 | 66 | 3 | 2 | 552 | 13 | 532 | 0.0 | 867 |
| MS.gene020924.t1 | MTR_5g097950 | 82.197 | 528 | 61 | 3 | 26 | 552 | 1 | 496 | 0.0 | 830 |
| MS.gene020924.t1 | MTR_3g023750 | 68.860 | 228 | 67 | 1 | 329 | 552 | 166 | 393 | 1.02e-99 | 307 |
| MS.gene020924.t1 | MTR_3g023750 | 42.690 | 342 | 146 | 7 | 61 | 388 | 80 | 385 | 5.28e-62 | 209 |
| MS.gene020924.t1 | MTR_3g023750 | 30.120 | 166 | 92 | 3 | 381 | 544 | 82 | 225 | 3.84e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020924.t1 | AT5G61190 | 25.514 | 243 | 142 | 6 | 313 | 547 | 188 | 399 | 7.88e-13 | 71.6 |
| MS.gene020924.t1 | AT5G61190 | 25.514 | 243 | 142 | 6 | 313 | 547 | 188 | 399 | 7.88e-13 | 71.6 |
| MS.gene020924.t1 | AT5G61190 | 25.514 | 243 | 142 | 6 | 313 | 547 | 188 | 399 | 8.85e-13 | 71.6 |
| MS.gene020924.t1 | AT5G61190 | 25.833 | 240 | 139 | 6 | 313 | 544 | 188 | 396 | 9.74e-13 | 71.6 |
| MS.gene020924.t1 | AT5G61190 | 25.833 | 240 | 139 | 6 | 313 | 544 | 188 | 396 | 1.01e-12 | 71.6 |
| MS.gene020924.t1 | AT5G61190 | 25.833 | 240 | 139 | 6 | 313 | 544 | 188 | 396 | 1.17e-12 | 71.2 |
| MS.gene020924.t1 | AT5G61190 | 25.833 | 240 | 139 | 6 | 313 | 544 | 188 | 396 | 1.19e-12 | 71.6 |
| MS.gene020924.t1 | AT5G61190 | 25.833 | 240 | 139 | 6 | 313 | 544 | 188 | 396 | 1.22e-12 | 71.2 |
| MS.gene020924.t1 | AT5G61190 | 25.833 | 240 | 139 | 6 | 313 | 544 | 94 | 302 | 1.23e-12 | 71.2 |
| MS.gene020924.t1 | AT5G61190 | 25.833 | 240 | 139 | 6 | 313 | 544 | 94 | 302 | 1.23e-12 | 71.2 |
| MS.gene020924.t1 | AT5G61190 | 25.833 | 240 | 139 | 6 | 313 | 544 | 188 | 396 | 1.27e-12 | 71.2 |
Find 106 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGCAACTTCAAATTTA+TGG | 0.103793 | 5.4:-77186067 | MS.gene020924:CDS |
| ACAGAATCAACCTGTTTCTT+AGG | 0.232180 | 5.4:+77185257 | None:intergenic |
| GACAAATTAACGCTTGTTCT+TGG | 0.286496 | 5.4:+77185396 | None:intergenic |
| CGCGCAGAAGGCAAACTTGC+AGG | 0.304037 | 5.4:+77186097 | None:intergenic |
| TGCGCAGAAGGCAAACTTGC+AGG | 0.309844 | 5.4:+77186184 | None:intergenic |
| CCACTGCCAACACCGACTTT+TGG | 0.312651 | 5.4:+77183615 | None:intergenic |
| CTTCTGCGCGTAATGGTTCC+TGG | 0.318364 | 5.4:-77186084 | MS.gene020924:CDS |
| GCCGCAATAGGCACTTCAAT+TGG | 0.319027 | 5.4:-77183576 | MS.gene020924:CDS |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5.4:+77185353 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5.4:+77185545 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5.4:+77185737 | None:intergenic |
| ATACTCTCAACCTGTTTCTT+AGG | 0.341366 | 5.4:+77185803 | None:intergenic |
| TCACCATAGCAGCATGATTA+TGG | 0.346041 | 5.4:+77183376 | None:intergenic |
| GTTCTTCAAGTGTTTCTTAC+CGG | 0.360756 | 5.4:+77183656 | None:intergenic |
| ATCCAACGACAAGCATTAAT+TGG | 0.362142 | 5.4:-77185302 | MS.gene020924:CDS |
| ACAATCAGAGCCTGCGAAAC+AGG | 0.362586 | 5.4:-77185651 | MS.gene020924:CDS |
| GCCAATGCTTCTAATATTGC+CGG | 0.369202 | 5.4:-77186152 | MS.gene020924:CDS |
| TGAACAGAAGGCAAACTTGC+AGG | 0.371807 | 5.4:+77186271 | None:intergenic |
| ATCCAAGGTCAAGCATTAAT+TGG | 0.376741 | 5.4:-77185848 | MS.gene020924:CDS |
| GAAACAGGTTGATTCTGTTA+AGG | 0.378526 | 5.4:-77185252 | MS.gene020924:CDS |
| CGCTTGAGTTCGGCAATAGA+TGG | 0.381144 | 5.4:+77183795 | None:intergenic |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.381545 | 5.4:-77185494 | MS.gene020924:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.381545 | 5.4:-77185590 | MS.gene020924:CDS |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.381545 | 5.4:-77185686 | MS.gene020924:CDS |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5.4:+77185367 | None:intergenic |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5.4:+77185751 | None:intergenic |
| TTTCGCAGGCTCTGATTGTT+CGG | 0.392564 | 5.4:+77185655 | None:intergenic |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.393012 | 5.4:+77185758 | None:intergenic |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.393801 | 5.4:+77185374 | None:intergenic |
| ACTACCACCACCGCCGCAAT+AGG | 0.395736 | 5.4:-77183588 | MS.gene020924:CDS |
| GGCTTTGATTGTTCAGCTAC+AGG | 0.407030 | 5.4:+77185566 | None:intergenic |
| GGCTCTGATTGTTTGGCTAC+AGG | 0.409218 | 5.4:+77185470 | None:intergenic |
| GCAATCAGAGCCTAAGAAAC+AGG | 0.410131 | 5.4:-77185813 | MS.gene020924:CDS |
| AAGCTTTGCTGACTTTGGTT+TGG | 0.410273 | 5.4:+77186017 | None:intergenic |
| TCTGAAAGCTTTGCTGACTT+TGG | 0.410594 | 5.4:+77186012 | None:intergenic |
| GCCATAAATTTGAAGTTGCC+AGG | 0.413010 | 5.4:+77186066 | None:intergenic |
| GACTGCAAAATTACAAGCAT+TGG | 0.415529 | 5.4:+77186238 | None:intergenic |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.423574 | 5.4:+77185662 | None:intergenic |
| ACAATCAGAACCTAAGAAAC+AGG | 0.437492 | 5.4:-77185267 | MS.gene020924:CDS |
| GGTGAGTATTTAAATTTGCC+TGG | 0.438482 | 5.4:+77183406 | None:intergenic |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5.4:-77185363 | MS.gene020924:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5.4:-77185747 | MS.gene020924:CDS |
| AATGCCATCATTAGACTTCA+AGG | 0.445716 | 5.4:+77183821 | None:intergenic |
| ACAATCAAAGCCTAAGAAAC+AGG | 0.446022 | 5.4:-77185555 | MS.gene020924:CDS |
| ACAATCAGAGCCTACAAAAC+AGG | 0.447564 | 5.4:-77185459 | MS.gene020924:CDS |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 5.4:+77185492 | None:intergenic |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 5.4:+77185588 | None:intergenic |
| GACCAATTAACGCTTGTCCT+TGG | 0.453949 | 5.4:+77185684 | None:intergenic |
| ACATATAACAAACATGTTGC+TGG | 0.455549 | 5.4:-77185191 | MS.gene020924:CDS |
| GGCTCTGATTGCTCGCGTAC+AGG | 0.455900 | 5.4:+77185824 | None:intergenic |
| AGCTACACTGCACACTTGTC+CGG | 0.457647 | 5.4:-77183675 | MS.gene020924:CDS |
| CCGCAATAGGCACTTCAATT+GGG | 0.461721 | 5.4:-77183575 | MS.gene020924:CDS |
| ATCACCGTTACGCTTGAGTT+CGG | 0.470795 | 5.4:+77183785 | None:intergenic |
| AGTTTGCCTTCTGCGCGTAA+TGG | 0.472468 | 5.4:-77186091 | MS.gene020924:CDS |
| CTTCTAATATTGCCGGCTGT+TGG | 0.475497 | 5.4:-77186145 | MS.gene020924:CDS |
| GCCGGCAATATTAGAAGCAT+TGG | 0.481716 | 5.4:+77186151 | None:intergenic |
| TATTGCGGCGGTGGTGGTAG+TGG | 0.490813 | 5.4:+77183590 | None:intergenic |
| TTGCTGACTTTGGTTTGGTT+AGG | 0.492552 | 5.4:+77186022 | None:intergenic |
| GACAGAGAAACGTAAAGCTA+TGG | 0.509221 | 5.4:-77183490 | MS.gene020924:CDS |
| AGTTTGCCTTCTGTTCAGAA+TGG | 0.514605 | 5.4:-77186265 | MS.gene020924:CDS |
| CATATAACAAACATGTTGCT+GGG | 0.516681 | 5.4:-77185190 | MS.gene020924:CDS |
| AGGCACTTCAATTGGGCCAC+AGG | 0.517728 | 5.4:-77183568 | MS.gene020924:CDS |
| CCAAAAGTCGGTGTTGGCAG+TGG | 0.518256 | 5.4:-77183615 | MS.gene020924:CDS |
| TGAAGTGCCTATTGCGGCGG+TGG | 0.518303 | 5.4:+77183581 | None:intergenic |
| ACAAAATCAACCTGTTTCGC+AGG | 0.519194 | 5.4:+77185641 | None:intergenic |
| CAGCATGATTATGGTCACTA+AGG | 0.520547 | 5.4:+77183385 | None:intergenic |
| TCATGCTGCTATGGTGAAGA+AGG | 0.523999 | 5.4:-77183370 | MS.gene020924:CDS |
| AGTGCCTATTGCGGCGGTGG+TGG | 0.527541 | 5.4:+77183584 | None:intergenic |
| GACCAATTAATGCTTGTCGT+TGG | 0.528108 | 5.4:+77185300 | None:intergenic |
| GACCAATTAATGCTTGACCT+TGG | 0.533650 | 5.4:+77185846 | None:intergenic |
| GGCATACCATTCTGCGCAGA+AGG | 0.536308 | 5.4:+77186172 | None:intergenic |
| GCTGCTATGGTGAAGAAGGC+AGG | 0.537781 | 5.4:-77183366 | MS.gene020924:CDS |
| AAACGTAAAGCTATGGAAAG+AGG | 0.547369 | 5.4:-77183483 | MS.gene020924:CDS |
| CTTCTAATATTGCAGGCTGT+CGG | 0.548494 | 5.4:-77186319 | MS.gene020924:intron |
| AAAAGCTGCTAAGAAAATCA+AGG | 0.554241 | 5.4:-77183751 | MS.gene020924:CDS |
| TGGGAGAAAGCATGCTGCTA+AGG | 0.554649 | 5.4:-77185171 | MS.gene020924:intron |
| TCAAGGTTGCTGAATCTGTA+TGG | 0.557151 | 5.4:-77183734 | MS.gene020924:CDS |
| AAGAAGGCAGGGTTAATCAC+TGG | 0.566902 | 5.4:-77183354 | MS.gene020924:CDS |
| TGACCATAATCATGCTGCTA+TGG | 0.569530 | 5.4:-77183379 | MS.gene020924:CDS |
| CCCAATTGAAGTGCCTATTG+CGG | 0.571583 | 5.4:+77183575 | None:intergenic |
| GGAATACCATTCTGAACAGA+AGG | 0.573481 | 5.4:+77186259 | None:intergenic |
| AGTTTGCCTTCTGCGCAGAA+TGG | 0.578105 | 5.4:-77186178 | MS.gene020924:CDS |
| TCAAATCCAAAAGTCGGTGT+TGG | 0.581990 | 5.4:-77183621 | MS.gene020924:CDS |
| AAACAGGTTGAGAGTATACA+AGG | 0.584396 | 5.4:-77185797 | MS.gene020924:CDS |
| CAATGTGGTGTGTAATAGCC+AGG | 0.584891 | 5.4:-77183424 | MS.gene020924:CDS |
| ATACAAGGACAAGCGTTAGT+TGG | 0.587493 | 5.4:-77185782 | MS.gene020924:CDS |
| CAGGAACCATTACGCGCAGA+AGG | 0.591477 | 5.4:+77186085 | None:intergenic |
| GTTGCCTTGAAGTCTAATGA+TGG | 0.591860 | 5.4:-77183825 | MS.gene020924:CDS |
| ACATGCAATGTTGTATGCGT+TGG | 0.594466 | 5.4:-77185221 | MS.gene020924:CDS |
| GCAGGGTTAATCACTGGTTG+AGG | 0.595222 | 5.4:-77183348 | None:intergenic |
| ACTGAAACAAGTAGTATCCA+AGG | 0.600512 | 5.4:-77185701 | MS.gene020924:CDS |
| CTGCTATGGTGAAGAAGGCA+GGG | 0.602051 | 5.4:-77183365 | MS.gene020924:CDS |
| TTGAAGTCTAATGATGGCAT+TGG | 0.606462 | 5.4:-77183819 | MS.gene020924:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5.4:-77185509 | MS.gene020924:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5.4:-77185605 | MS.gene020924:CDS |
| CATGAAGACACTCACAGTCA+TGG | 0.608974 | 5.4:+77186630 | None:intergenic |
| ACTGACACAAGTAGTATCCA+AGG | 0.612630 | 5.4:-77185863 | MS.gene020924:CDS |
| AATTGAAGTGCCTATTGCGG+CGG | 0.623504 | 5.4:+77183578 | None:intergenic |
| TTCAGATAAACCGAAAACAA+AGG | 0.627362 | 5.4:-77183535 | MS.gene020924:CDS |
| AAACTGTCAAATCCAAAAGT+CGG | 0.636332 | 5.4:-77183627 | MS.gene020924:CDS |
| TAAGAAACACTTGAAGAACA+TGG | 0.658000 | 5.4:-77183652 | MS.gene020924:CDS |
| TGATGTGATGAACCAACAGC+CGG | 0.663899 | 5.4:+77186133 | None:intergenic |
| ATTGCCGAACTCAAGCGTAA+CGG | 0.670672 | 5.4:-77183789 | MS.gene020924:CDS |
| AGATAAACCGAAAACAAAGG+AGG | 0.682827 | 5.4:-77183532 | MS.gene020924:CDS |
| AACACAAGAAGAATTTGCAG+CGG | 0.684214 | 5.4:-77185925 | MS.gene020924:CDS |
| TATGTGCACTTTATGCAATG+TGG | 0.714695 | 5.4:-77183439 | MS.gene020924:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAAGATTATATATAGTT+TGG | + | chr5.4:77185733-77185752 | None:intergenic | 15.0% |
| !!! | CAAATTTTTTTTATCTTGAT+TGG | - | chr5.4:77185029-77185048 | MS.gene020924:intron | 15.0% |
| !!! | TATGTAAAAATATAGTCTTT+TGG | - | chr5.4:77185820-77185839 | MS.gene020924:CDS | 15.0% |
| !!! | TTTTTCTTTATTTATTTTGC+TGG | - | chr5.4:77185644-77185663 | MS.gene020924:CDS | 15.0% |
| !! | AATTATTATATCAATCAGTG+TGG | - | chr5.4:77183523-77183542 | MS.gene020924:CDS | 20.0% |
| !! | ATGATAATACAACAAATACT+TGG | + | chr5.4:77186053-77186072 | None:intergenic | 20.0% |
| !! | CTAAAATATTTGATTGTTCA+AGG | + | chr5.4:77185962-77185981 | None:intergenic | 20.0% |
| !! | GTAAAAGTAATCATTAACTA+CGG | + | chr5.4:77184896-77184915 | None:intergenic | 20.0% |
| !!! | ACAATTTTGAAAAATGTAGA+AGG | - | chr5.4:77183423-77183442 | MS.gene020924:CDS | 20.0% |
| !!! | TGAATATTTTGTATAACTGT+GGG | - | chr5.4:77185141-77185160 | MS.gene020924:intron | 20.0% |
| ! | AAACTCAAAATCCTAAGATA+AGG | + | chr5.4:77183596-77183615 | None:intergenic | 25.0% |
| ! | AACTCAAAATCCTAAGATAA+GGG | + | chr5.4:77183595-77183614 | None:intergenic | 25.0% |
| ! | AAGAAGATGAATGATGAAAA+TGG | - | chr5.4:77183446-77183465 | MS.gene020924:CDS | 25.0% |
| ! | ACTCAGAAACATTTCATAAA+TGG | + | chr5.4:77186110-77186129 | None:intergenic | 25.0% |
| ! | AGAAGATGAATGATGAAAAT+GGG | - | chr5.4:77183447-77183466 | MS.gene020924:CDS | 25.0% |
| ! | ATAAGGAAAAAATCGTTGTT+CGG | - | chr5.4:77185327-77185346 | MS.gene020924:CDS | 25.0% |
| ! | GTATGAAAATAAGAGAATCT+TGG | + | chr5.4:77185246-77185265 | None:intergenic | 25.0% |
| !! | GTGAATATTTTGTATAACTG+TGG | - | chr5.4:77185140-77185159 | MS.gene020924:intron | 25.0% |
| !!! | CTTAGGATTTTGAGTTTTAT+TGG | - | chr5.4:77183599-77183618 | MS.gene020924:CDS | 25.0% |
| !!! | TGTTATTTTCATGTAAGACA+TGG | + | chr5.4:77184978-77184997 | None:intergenic | 25.0% |
| !!! | TTGTAGCTTTTGAAAAATCA+CGG | + | chr5.4:77185190-77185209 | None:intergenic | 25.0% |
| AAAAGCTGCTAAGAAAATCA+AGG | - | chr5.4:77186227-77186246 | MS.gene020924:CDS | 30.0% | |
| AAACTGTCAAATCCAAAAGT+CGG | - | chr5.4:77186351-77186370 | MS.gene020924:intron | 30.0% | |
| AACCTAATATATGTCCATAC+AGG | - | chr5.4:77185869-77185888 | MS.gene020924:CDS | 30.0% | |
| AAGATGAATGATGAAAATGG+GGG | - | chr5.4:77183449-77183468 | MS.gene020924:CDS | 30.0% | |
| ACATATAACAAACATGTTGC+TGG | - | chr5.4:77184787-77184806 | MS.gene020924:intron | 30.0% | |
| AGATTATATATAGTTTGGCC+TGG | + | chr5.4:77185728-77185747 | None:intergenic | 30.0% | |
| ATAACAGTGTTGCATACAAA+AGG | + | chr5.4:77184847-77184866 | None:intergenic | 30.0% | |
| ATGAGTTTAGTGTTGTGTTT+CGG | - | chr5.4:77185399-77185418 | MS.gene020924:CDS | 30.0% | |
| ATTCAGCTAAAATGCATGTA+AGG | - | chr5.4:77185106-77185125 | MS.gene020924:intron | 30.0% | |
| CATATAACAAACATGTTGCT+GGG | - | chr5.4:77184788-77184807 | MS.gene020924:intron | 30.0% | |
| CTATCTATAGATATACATCC+AGG | + | chr5.4:77186023-77186042 | None:intergenic | 30.0% | |
| GAAAATAAGAGAATCTTGGT+GGG | + | chr5.4:77185242-77185261 | None:intergenic | 30.0% | |
| GAAGATGAATGATGAAAATG+GGG | - | chr5.4:77183448-77183467 | MS.gene020924:CDS | 30.0% | |
| GACAGAACAAGAACATTAAA+AGG | - | chr5.4:77185005-77185024 | MS.gene020924:intron | 30.0% | |
| GCGAGAATAATAGAATAAAG+AGG | - | chr5.4:77183549-77183568 | MS.gene020924:CDS | 30.0% | |
| GGAAAAAGTAACTGGAAATA+AGG | - | chr5.4:77185310-77185329 | MS.gene020924:CDS | 30.0% | |
| TAAGAAACACTTGAAGAACA+TGG | - | chr5.4:77186326-77186345 | MS.gene020924:intron | 30.0% | |
| TAAGGAAAAAATCGTTGTTC+GGG | - | chr5.4:77185328-77185347 | MS.gene020924:CDS | 30.0% | |
| TGAAAATAAGAGAATCTTGG+TGG | + | chr5.4:77185243-77185262 | None:intergenic | 30.0% | |
| TTCAGATAAACCGAAAACAA+AGG | - | chr5.4:77186443-77186462 | MS.gene020924:intron | 30.0% | |
| TTCCTGTATGGACATATATT+AGG | + | chr5.4:77185874-77185893 | None:intergenic | 30.0% | |
| ! | TGAACTGCAAGAAAAGTATA+AGG | - | chr5.4:77186077-77186096 | MS.gene020924:CDS | 30.0% |
| !! | GTATTCTAGTTCAAACTAGT+TGG | - | chr5.4:77185272-77185291 | MS.gene020924:CDS | 30.0% |
| !!! | TTACATGCATTTTAGCTGAA+TGG | + | chr5.4:77185107-77185126 | None:intergenic | 30.0% |
| AAACGTAAAGCTATGGAAAG+AGG | - | chr5.4:77186495-77186514 | MS.gene020924:intron | 35.0% | |
| AACACAAGAAGAATTTGCAG+CGG | - | chr5.4:77184053-77184072 | MS.gene020924:intron | 35.0% | |
| AACCTATGAGTCACAAAAAG+TGG | + | chr5.4:77186136-77186155 | None:intergenic | 35.0% | |
| AATACCTCTGTAGTTAACAG+AGG | + | chr5.4:77185553-77185572 | None:intergenic | 35.0% | |
| AATGCCATCATTAGACTTCA+AGG | + | chr5.4:77186160-77186179 | None:intergenic | 35.0% | |
| ACAATCAAAGCCTAAGAAAC+AGG | - | chr5.4:77184423-77184442 | MS.gene020924:intron | 35.0% | |
| ACAATCAGAACCTAAGAAAC+AGG | - | chr5.4:77184711-77184730 | MS.gene020924:intron | 35.0% | |
| ACGTCATCAAATACTTCTAG+TGG | + | chr5.4:77185597-77185616 | None:intergenic | 35.0% | |
| ACTGAAACAAGTAGTATCCA+AGG | - | chr5.4:77184277-77184296 | MS.gene020924:intron | 35.0% | |
| AGATAAACCGAAAACAAAGG+AGG | - | chr5.4:77186446-77186465 | MS.gene020924:intron | 35.0% | |
| AGCTAGGTTCTACTGAAATT+AGG | + | chr5.4:77185490-77185509 | None:intergenic | 35.0% | |
| ATAAAGAGGTCAACTGCATT+TGG | - | chr5.4:77183563-77183582 | MS.gene020924:CDS | 35.0% | |
| ATCCAACGACAAGCATTAAT+TGG | - | chr5.4:77184676-77184695 | MS.gene020924:intron | 35.0% | |
| ATCCAAGGTCAAGCATTAAT+TGG | - | chr5.4:77184130-77184149 | MS.gene020924:intron | 35.0% | |
| GACAAATTAACGCTTGTTCT+TGG | + | chr5.4:77184585-77184604 | None:intergenic | 35.0% | |
| GACTGCAAAATTACAAGCAT+TGG | + | chr5.4:77183743-77183762 | None:intergenic | 35.0% | |
| GAGTTCTATCATTTCCTGTA+TGG | + | chr5.4:77185886-77185905 | None:intergenic | 35.0% | |
| GCTAGGTTCTACTGAAATTA+GGG | + | chr5.4:77185489-77185508 | None:intergenic | 35.0% | |
| GGTGAGTATTTAAATTTGCC+TGG | + | chr5.4:77186575-77186594 | None:intergenic | 35.0% | |
| GTTCTTCAAGTGTTTCTTAC+CGG | + | chr5.4:77186325-77186344 | None:intergenic | 35.0% | |
| TATGTGCACTTTATGCAATG+TGG | - | chr5.4:77186539-77186558 | MS.gene020924:intron | 35.0% | |
| TCCAATGCTTCTAATATTGC+AGG | - | chr5.4:77183652-77183671 | MS.gene020924:CDS | 35.0% | |
| TCCTGGCAACTTCAAATTTA+TGG | - | chr5.4:77183911-77183930 | MS.gene020924:intron | 35.0% | |
| TGTGCTTTGCAAAATCATAG+TGG | - | chr5.4:77185210-77185229 | MS.gene020924:CDS | 35.0% | |
| TTGAAGTCTAATGATGGCAT+TGG | - | chr5.4:77186159-77186178 | MS.gene020924:CDS | 35.0% | |
| ! | AAACAGGTTGAGAGTATACA+AGG | - | chr5.4:77184181-77184200 | MS.gene020924:intron | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | + | chr5.4:77184244-77184263 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTTGT+AGG | + | chr5.4:77184532-77184551 | None:intergenic | 35.0% |
| ! | ACTGCAAGAAAAGTATAAGG+CGG | - | chr5.4:77186080-77186099 | MS.gene020924:CDS | 35.0% |
| ! | ATACTCTCAACCTGTTTCTT+AGG | + | chr5.4:77184178-77184197 | None:intergenic | 35.0% |
| ! | CTCATAAATTTTGTAGTGCC+AGG | - | chr5.4:77185707-77185726 | MS.gene020924:CDS | 35.0% |
| ! | GTTTTCGGTTTATCTGAATC+TGG | + | chr5.4:77186441-77186460 | None:intergenic | 35.0% |
| ! | TACGGTGTTGAATGAGAAAA+CGG | + | chr5.4:77184878-77184897 | None:intergenic | 35.0% |
| ! | TGTGCTTTTCAAAAGAGACT+TGG | + | chr5.4:77184021-77184040 | None:intergenic | 35.0% |
| ! | TTGGTTTGATCCCTTATCTT+AGG | - | chr5.4:77183582-77183601 | MS.gene020924:CDS | 35.0% |
| ! | TTTCTTAGGCTCTGATTGTT+CGG | + | chr5.4:77184230-77184249 | None:intergenic | 35.0% |
| !! | GAAACAGGTTGATTCTGTTA+AGG | - | chr5.4:77184246-77184265 | MS.gene020924:intron | 35.0% |
| !! | GTTTAGCTAATTAGCTCTGT+AGG | - | chr5.4:77185081-77185100 | MS.gene020924:intron | 35.0% |
| !! | TCTTTTGAAAAGCACATAGC+TGG | - | chr5.4:77184025-77184044 | MS.gene020924:intron | 35.0% |
| !! | TTGTTTGCTATCAGTTATCC+TGG | - | chr5.4:77186002-77186021 | MS.gene020924:CDS | 35.0% |
| !! | TTTTGTAGGCTCTGATTGTT+TGG | + | chr5.4:77184518-77184537 | None:intergenic | 35.0% |
| !!! | ATAAGTGGGAAGGTTTTTTG+AGG | - | chr5.4:77185368-77185387 | MS.gene020924:CDS | 35.0% |
| !!! | TCAGATACCTCCTTTGTTTT+CGG | + | chr5.4:77186456-77186475 | None:intergenic | 35.0% |
| AAGACAAGATAGGATCACTG+TGG | - | chr5.4:77185058-77185077 | MS.gene020924:intron | 40.0% | |
| ACAAAATCAACCTGTTTCGC+AGG | + | chr5.4:77184340-77184359 | None:intergenic | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | - | chr5.4:77184231-77184250 | MS.gene020924:intron | 40.0% | |
| ACAATCAGAGCCTACAAAAC+AGG | - | chr5.4:77184519-77184538 | MS.gene020924:intron | 40.0% | |
| ACATGCAATGTTGTATGCGT+TGG | - | chr5.4:77184757-77184776 | MS.gene020924:intron | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | - | chr5.4:77184115-77184134 | MS.gene020924:intron | 40.0% | |
| AGACAAGATAGGATCACTGT+GGG | - | chr5.4:77185059-77185078 | MS.gene020924:intron | 40.0% | |
| AGTTTGCCTTCTGTTCAGAA+TGG | - | chr5.4:77183713-77183732 | MS.gene020924:CDS | 40.0% | |
| ATACAAGGACAAGCGTTAGT+TGG | - | chr5.4:77184196-77184215 | MS.gene020924:intron | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | - | chr5.4:77184292-77184311 | MS.gene020924:intron | 40.0% | |
| ATGTAGACAGCAGCAATAAG+TGG | - | chr5.4:77185353-77185372 | MS.gene020924:CDS | 40.0% | |
| CAGCATGATTATGGTCACTA+AGG | + | chr5.4:77186596-77186615 | None:intergenic | 40.0% | |
| CTTCTAATATTGCAGGCTGT+CGG | - | chr5.4:77183659-77183678 | MS.gene020924:CDS | 40.0% | |
| GACAGAGAAACGTAAAGCTA+TGG | - | chr5.4:77186488-77186507 | MS.gene020924:intron | 40.0% | |
| GACCAATTAATGCTTGACCT+TGG | + | chr5.4:77184135-77184154 | None:intergenic | 40.0% | |
| GACCAATTAATGCTTGTCGT+TGG | + | chr5.4:77184681-77184700 | None:intergenic | 40.0% | |
| GCCAATGCTTCTAATATTGC+CGG | - | chr5.4:77183826-77183845 | MS.gene020924:CDS | 40.0% | |
| GGAATACCATTCTGAACAGA+AGG | + | chr5.4:77183722-77183741 | None:intergenic | 40.0% | |
| GTTGCCTTGAAGTCTAATGA+TGG | - | chr5.4:77186153-77186172 | MS.gene020924:CDS | 40.0% | |
| TCAAATCCAAAAGTCGGTGT+TGG | - | chr5.4:77186357-77186376 | MS.gene020924:intron | 40.0% | |
| TCAAGGTTGCTGAATCTGTA+TGG | - | chr5.4:77186244-77186263 | MS.gene020924:CDS | 40.0% | |
| TCACCATAGCAGCATGATTA+TGG | + | chr5.4:77186605-77186624 | None:intergenic | 40.0% | |
| TCGTTTCATGGTCAAATTGC+AGG | + | chr5.4:77185434-77185453 | None:intergenic | 40.0% | |
| TGACCATAATCATGCTGCTA+TGG | - | chr5.4:77186599-77186618 | MS.gene020924:intron | 40.0% | |
| TGTAGACAGCAGCAATAAGT+GGG | - | chr5.4:77185354-77185373 | MS.gene020924:CDS | 40.0% | |
| TTGGACACACAAGACAAGAT+AGG | - | chr5.4:77185048-77185067 | MS.gene020924:intron | 40.0% | |
| ! | CTGCAAGAAAAGTATAAGGC+GGG | - | chr5.4:77186081-77186100 | MS.gene020924:CDS | 40.0% |
| ! | GCCATAAATTTGAAGTTGCC+AGG | + | chr5.4:77183915-77183934 | None:intergenic | 40.0% |
| ! | GCCTGCAATATTAGAAGCAT+TGG | + | chr5.4:77183656-77183675 | None:intergenic | 40.0% |
| ! | TGCAAGAAAAGTATAAGGCG+GGG | - | chr5.4:77186082-77186101 | MS.gene020924:CDS | 40.0% |
| !! | AAGCTTTGCTGACTTTGGTT+TGG | + | chr5.4:77183964-77183983 | None:intergenic | 40.0% |
| !! | TCTGAAAGCTTTGCTGACTT+TGG | + | chr5.4:77183969-77183988 | None:intergenic | 40.0% |
| !! | TTGCTGACTTTGGTTTGGTT+AGG | + | chr5.4:77183959-77183978 | None:intergenic | 40.0% |
| !!! | GACCACTTTTTGTGACTCAT+AGG | - | chr5.4:77186131-77186150 | MS.gene020924:CDS | 40.0% |
| !!! | TTCCAGTTACTTTTTCCCAG+TGG | + | chr5.4:77185307-77185326 | None:intergenic | 40.0% |
| AAGAAGGCAGGGTTAATCAC+TGG | - | chr5.4:77186624-77186643 | MS.gene020924:intron | 45.0% | |
| AATACTGTGCCATGACGTAG+CGG | + | chr5.4:77185514-77185533 | None:intergenic | 45.0% | |
| ACAGCCTCTGTTAACTACAG+AGG | - | chr5.4:77185546-77185565 | MS.gene020924:CDS | 45.0% | |
| ATCACCGTTACGCTTGAGTT+CGG | + | chr5.4:77186196-77186215 | None:intergenic | 45.0% | |
| ATTGCCGAACTCAAGCGTAA+CGG | - | chr5.4:77186189-77186208 | MS.gene020924:CDS | 45.0% | |
| CAATGTGGTGTGTAATAGCC+AGG | - | chr5.4:77186554-77186573 | MS.gene020924:intron | 45.0% | |
| CCACACATAATGCACACTAG+TGG | - | chr5.4:77184923-77184942 | MS.gene020924:intron | 45.0% | |
| CCACTAGTGTGCATTATGTG+TGG | + | chr5.4:77184926-77184945 | None:intergenic | 45.0% | |
| CCGCAATAGGCACTTCAATT+GGG | - | chr5.4:77186403-77186422 | MS.gene020924:intron | 45.0% | |
| GACCAATTAACGCTTGTCCT+TGG | + | chr5.4:77184297-77184316 | None:intergenic | 45.0% | |
| GCAATCAGAGCCTAAGAAAC+AGG | - | chr5.4:77184165-77184184 | MS.gene020924:intron | 45.0% | |
| GTAGTTAACAGAGGCTGTTG+CGG | + | chr5.4:77185544-77185563 | None:intergenic | 45.0% | |
| GTCCACTGGGAAAAAGTAAC+TGG | - | chr5.4:77185302-77185321 | MS.gene020924:CDS | 45.0% | |
| TCAGCGTTACAGTCGTTTCA+TGG | + | chr5.4:77185446-77185465 | None:intergenic | 45.0% | |
| TCATGCTGCTATGGTGAAGA+AGG | - | chr5.4:77186608-77186627 | MS.gene020924:intron | 45.0% | |
| TGAACAGAAGGCAAACTTGC+AGG | + | chr5.4:77183710-77183729 | None:intergenic | 45.0% | |
| TGACTGTGAGTGTCTTCATG+TGG | - | chr5.4:77183351-77183370 | MS.gene020924:CDS | 45.0% | |
| TGATGTGATGAACCAACAGC+CGG | + | chr5.4:77183848-77183867 | None:intergenic | 45.0% | |
| ! | AATTGAAGTGCCTATTGCGG+CGG | + | chr5.4:77186403-77186422 | None:intergenic | 45.0% |
| ! | CCCAATTGAAGTGCCTATTG+CGG | + | chr5.4:77186406-77186425 | None:intergenic | 45.0% |
| ! | CTTCTAATATTGCCGGCTGT+TGG | - | chr5.4:77183833-77183852 | MS.gene020924:intron | 45.0% |
| ! | GCCGGCAATATTAGAAGCAT+TGG | + | chr5.4:77183830-77183849 | None:intergenic | 45.0% |
| ! | GGCTTTGATTGTTCAGCTAC+AGG | + | chr5.4:77184415-77184434 | None:intergenic | 45.0% |
| ! | TTTCGCAGGCTCTGATTGTT+CGG | + | chr5.4:77184326-77184345 | None:intergenic | 45.0% |
| !!! | TCTGAATCTGGCTTTTCCTG+TGG | + | chr5.4:77186429-77186448 | None:intergenic | 45.0% |
| ACAATCAGAGCCTGCGAAAC+AGG | - | chr5.4:77184327-77184346 | MS.gene020924:intron | 50.0% | |
| AGCTACACTGCACACTTGTC+CGG | - | chr5.4:77186303-77186322 | MS.gene020924:CDS | 50.0% | |
| AGTTTGCCTTCTGCGCAGAA+TGG | - | chr5.4:77183800-77183819 | MS.gene020924:CDS | 50.0% | |
| AGTTTGCCTTCTGCGCGTAA+TGG | - | chr5.4:77183887-77183906 | MS.gene020924:intron | 50.0% | |
| CGCTTGAGTTCGGCAATAGA+TGG | + | chr5.4:77186186-77186205 | None:intergenic | 50.0% | |
| CTGCTATGGTGAAGAAGGCA+GGG | - | chr5.4:77186613-77186632 | MS.gene020924:intron | 50.0% | |
| GAAGCTTCTGACTTTCGCTC+TGG | - | chr5.4:77183621-77183640 | MS.gene020924:CDS | 50.0% | |
| GACAGCAGCAATAAGTGGGA+AGG | - | chr5.4:77185358-77185377 | MS.gene020924:CDS | 50.0% | |
| GCCGCAATAGGCACTTCAAT+TGG | - | chr5.4:77186402-77186421 | MS.gene020924:intron | 50.0% | |
| ! | AGTTGGCTTACTCGTCCACT+GGG | - | chr5.4:77185289-77185308 | MS.gene020924:CDS | 50.0% |
| ! | GGCTCTGATTGTTTGGCTAC+AGG | + | chr5.4:77184511-77184530 | None:intergenic | 50.0% |
| ! | TAGTTGGCTTACTCGTCCAC+TGG | - | chr5.4:77185288-77185307 | MS.gene020924:CDS | 50.0% |
| ! | TGGGAGAAAGCATGCTGCTA+AGG | - | chr5.4:77184807-77184826 | MS.gene020924:intron | 50.0% |
| ACCTAGCTACCGCTACGTCA+TGG | - | chr5.4:77185502-77185521 | MS.gene020924:CDS | 55.0% | |
| AGGCACTTCAATTGGGCCAC+AGG | - | chr5.4:77186410-77186429 | MS.gene020924:intron | 55.0% | |
| CAGGAACCATTACGCGCAGA+AGG | + | chr5.4:77183896-77183915 | None:intergenic | 55.0% | |
| CTTCTGCGCGTAATGGTTCC+TGG | - | chr5.4:77183894-77183913 | MS.gene020924:intron | 55.0% | |
| GCTGCTATGGTGAAGAAGGC+AGG | - | chr5.4:77186612-77186631 | MS.gene020924:intron | 55.0% | |
| GGCATACCATTCTGCGCAGA+AGG | + | chr5.4:77183809-77183828 | None:intergenic | 55.0% | |
| TGCGCAGAAGGCAAACTTGC+AGG | + | chr5.4:77183797-77183816 | None:intergenic | 55.0% | |
| ! | ACTGTAACGCTGACTGCCAC+GGG | - | chr5.4:77185453-77185472 | MS.gene020924:CDS | 55.0% |
| ! | GACTGTAACGCTGACTGCCA+CGG | - | chr5.4:77185452-77185471 | MS.gene020924:CDS | 55.0% |
| ! | GGCTCTGATTGTTCGGCTAC+AGG | + | chr5.4:77184223-77184242 | None:intergenic | 55.0% |
| !! | CCAAAAGTCGGTGTTGGCAG+TGG | - | chr5.4:77186363-77186382 | MS.gene020924:intron | 55.0% |
| !!! | CCACTGCCAACACCGACTTT+TGG | + | chr5.4:77186366-77186385 | None:intergenic | 55.0% |
| ACTACCACCACCGCCGCAAT+AGG | - | chr5.4:77186390-77186409 | MS.gene020924:intron | 60.0% | |
| CGCGCAGAAGGCAAACTTGC+AGG | + | chr5.4:77183884-77183903 | None:intergenic | 60.0% | |
| GCCATGACGTAGCGGTAGCT+AGG | + | chr5.4:77185506-77185525 | None:intergenic | 60.0% | |
| ! | GGCTCTGATTGCTCGCGTAC+AGG | + | chr5.4:77184157-77184176 | None:intergenic | 60.0% |
| ! | TATTGCGGCGGTGGTGGTAG+TGG | + | chr5.4:77186391-77186410 | None:intergenic | 60.0% |
| ! | TGAAGTGCCTATTGCGGCGG+TGG | + | chr5.4:77186400-77186419 | None:intergenic | 60.0% |
| AGTGCCTATTGCGGCGGTGG+TGG | + | chr5.4:77186397-77186416 | None:intergenic | 65.0% | |
| TTAGGGCAGCGTAGCGCCCG+TGG | + | chr5.4:77185472-77185491 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 77183350 | 77186650 | 77183350 | ID=MS.gene020924 |
| chr5.4 | mRNA | 77183350 | 77186650 | 77183350 | ID=MS.gene020924.t1;Parent=MS.gene020924 |
| chr5.4 | exon | 77186645 | 77186650 | 77186645 | ID=MS.gene020924.t1.exon1;Parent=MS.gene020924.t1 |
| chr5.4 | CDS | 77186645 | 77186650 | 77186645 | ID=cds.MS.gene020924.t1;Parent=MS.gene020924.t1 |
| chr5.4 | exon | 77185172 | 77186326 | 77185172 | ID=MS.gene020924.t1.exon2;Parent=MS.gene020924.t1 |
| chr5.4 | CDS | 77185172 | 77186326 | 77185172 | ID=cds.MS.gene020924.t1;Parent=MS.gene020924.t1 |
| chr5.4 | exon | 77183350 | 77183847 | 77183350 | ID=MS.gene020924.t1.exon3;Parent=MS.gene020924.t1 |
| chr5.4 | CDS | 77183350 | 77183847 | 77183350 | ID=cds.MS.gene020924.t1;Parent=MS.gene020924.t1 |
| Gene Sequence |
| Protein sequence |
