AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021020.t1 MTR_0091s0080 33.883 546 245 7 43 573 28 472 8.15e-107 330
MS.gene021020.t1 MTR_0091s0090 42.512 207 118 1 359 565 4 209 4.74e-55 187
MS.gene021020.t1 MTR_0091s0090 36.946 203 125 1 91 290 3 205 5.16e-40 147
MS.gene021020.t1 MTR_1g052720 34.470 264 146 6 43 283 36 295 8.96e-49 172
MS.gene021020.t1 MTR_1g052720 34.432 273 161 4 308 566 34 302 1.58e-47 168
MS.gene021020.t1 MTR_6g465600 35.714 238 138 4 44 267 40 276 3.32e-44 159
MS.gene021020.t1 MTR_6g465600 36.694 248 142 4 300 533 28 274 3.49e-44 159
MS.gene021020.t1 MTR_0246s0040 34.091 264 156 7 317 579 72 318 1.77e-34 133
MS.gene021020.t1 MTR_0246s0040 33.028 218 133 3 50 267 72 276 1.23e-32 128
MS.gene021020.t1 MTR_1g105780 29.437 231 150 2 49 267 40 269 1.57e-29 118
MS.gene021020.t1 MTR_1g105780 29.302 215 140 2 314 517 38 251 4.79e-26 108
MS.gene021020.t1 MTR_1g105765 29.004 231 151 2 49 267 40 269 4.20e-29 117
MS.gene021020.t1 MTR_1g105765 29.767 215 139 2 314 517 38 251 2.51e-26 108
MS.gene021020.t1 MTR_7g110090 28.632 234 154 2 49 270 39 271 4.90e-29 116
MS.gene021020.t1 MTR_7g110090 27.490 251 165 5 300 536 22 269 5.61e-24 102
MS.gene021020.t1 MTR_3g070250 29.707 239 150 2 49 270 44 281 1.27e-26 110
MS.gene021020.t1 MTR_3g070250 28.512 242 151 6 299 521 26 264 7.61e-20 90.5
MS.gene021020.t1 MTR_4g032560 29.060 234 153 2 49 270 68 300 8.36e-26 108
MS.gene021020.t1 MTR_4g032560 27.881 269 180 5 277 532 28 295 1.01e-21 96.3
MS.gene021020.t1 MTR_1g084880 29.289 239 151 2 49 270 39 276 1.00e-25 107
MS.gene021020.t1 MTR_1g084880 27.511 229 145 3 314 524 37 262 1.50e-18 86.7
MS.gene021020.t1 MTR_3g048970 28.870 239 152 2 49 270 39 276 2.43e-25 106
MS.gene021020.t1 MTR_3g048970 27.948 229 144 4 314 524 37 262 1.28e-18 86.7
MS.gene021020.t1 MTR_4g032580 28.632 234 154 2 49 270 68 300 3.79e-25 106
MS.gene021020.t1 MTR_4g032580 27.881 269 180 5 277 532 28 295 9.35e-22 96.3
MS.gene021020.t1 MTR_3g085990 29.730 222 130 4 49 270 40 235 6.80e-25 103
MS.gene021020.t1 MTR_3g085990 26.316 228 140 6 298 524 21 221 2.64e-15 76.3
MS.gene021020.t1 MTR_1g023840 40.594 101 60 0 434 534 10 110 7.89e-22 92.0
MS.gene021020.t1 MTR_1g023840 44.681 94 52 0 169 262 13 106 1.28e-21 91.7
MS.gene021020.t1 MTR_7g050355 26.022 269 133 3 300 567 28 231 2.99e-21 98.2
MS.gene021020.t1 MTR_1g047540 26.840 231 147 5 49 270 39 256 4.65e-19 90.9
MS.gene021020.t1 MTR_1g047540 27.530 247 155 8 300 536 22 254 8.27e-17 84.0
MS.gene021020.t1 MTR_4g062370 27.165 254 163 6 273 514 8 251 4.73e-19 91.7
MS.gene021020.t1 MTR_4g062370 27.854 219 141 4 49 253 43 258 1.94e-18 89.7
MS.gene021020.t1 MTR_2g100360 25.792 221 142 3 48 249 38 255 4.02e-18 85.1
MS.gene021020.t1 MTR_2g100360 25.221 226 152 3 314 523 37 261 4.23e-16 79.3
MS.gene021020.t1 MTR_5g066660 26.210 248 162 6 50 295 40 268 5.01e-18 85.1
MS.gene021020.t1 MTR_5g066660 26.484 219 140 5 314 530 37 236 1.39e-12 68.9
MS.gene021020.t1 MTR_2g038740 28.272 191 120 1 49 222 39 229 1.38e-17 87.0
MS.gene021020.t1 MTR_2g038740 27.413 259 160 5 314 545 37 294 1.83e-17 86.7
MS.gene021020.t1 MTR_8g064960 41.892 74 42 1 189 262 27 99 2.32e-17 78.6
MS.gene021020.t1 MTR_8g064930 67.347 49 16 0 322 370 2 50 4.70e-17 75.5
MS.gene021020.t1 MTR_3g452180 26.374 182 121 2 101 270 7 187 6.58e-17 79.7
MS.gene021020.t1 MTR_3g452180 25.824 182 119 4 368 536 7 185 7.00e-14 70.9
MS.gene021020.t1 MTR_4g117740 28.571 154 93 2 60 213 61 197 1.49e-16 79.0
MS.gene021020.t1 MTR_4g117740 27.891 147 88 2 331 477 65 193 1.44e-13 70.1
MS.gene021020.t1 MTR_1g087870 25.000 240 153 6 64 282 2 235 5.74e-16 78.6
MS.gene021020.t1 MTR_1g087870 25.114 219 147 4 331 533 2 219 7.40e-16 78.2
MS.gene021020.t1 MTR_6g033605 37.349 83 51 1 189 270 30 112 1.99e-14 70.1
MS.gene021020.t1 MTR_6g033605 32.927 82 54 1 457 537 30 111 1.53e-12 64.7
MS.gene021020.t1 MTR_0521s0010 26.519 181 102 2 50 213 34 200 1.76e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 153 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTGTGGCAAGGATTTC+TGG 0.139608 1.4:+53609923 None:intergenic
AAACTGGACCGTCGTGATTT+TGG 0.142859 1.4:-53611623 MS.gene021020:CDS
CAATCCAGCCTTGTTTCTTA+TGG 0.243933 1.4:+53610206 None:intergenic
CGGTCCAGTTTGGATATTAT+TGG 0.264347 1.4:+53611635 None:intergenic
ATCCATGGGTGCAGTGTATT+GGG 0.290852 1.4:+53609698 None:intergenic
CATTAGACATTGCCGTGGTT+TGG 0.309583 1.4:-53611427 MS.gene021020:intron
AAGGAGCAGATCACAATATT+AGG 0.318102 1.4:+53612186 None:intergenic
CTCATCATTGCCATCTCACT+TGG 0.320277 1.4:+53612069 None:intergenic
TGTCACGCTGAATGAACTTT+AGG 0.324413 1.4:+53611326 None:intergenic
ACAAATGCAGATTTGATTAG+AGG 0.328195 1.4:-53611160 MS.gene021020:CDS
ATTAGACATTGCCGTGGTTT+GGG 0.336423 1.4:-53611426 MS.gene021020:intron
CCGAGGTTCATTACTTCATC+AGG 0.337428 1.4:-53610144 MS.gene021020:CDS
GATATATCGGATAATGGATA+TGG 0.364913 1.4:+53610177 None:intergenic
CCTACCACACTTACGATTGT+TGG 0.366401 1.4:-53609901 MS.gene021020:CDS
ACCTCTGCGATGTGCAAATC+AGG 0.368835 1.4:+53609794 None:intergenic
ATCGTCAAGGTCATAAGATT+TGG 0.374229 1.4:+53611704 None:intergenic
ACATCGCAGAGGTTGGTTGC+AGG 0.375369 1.4:-53609784 MS.gene021020:CDS
ACAACAATGATATTGTTGTT+TGG 0.386359 1.4:+53610357 None:intergenic
ACCTCAATCTCATTGTTCAT+TGG 0.386489 1.4:+53611836 None:intergenic
GATATTTATAACATTGTAGA+TGG 0.391221 1.4:-53610276 MS.gene021020:CDS
GACTTCGTCTGATGTCCTCT+CGG 0.399084 1.4:-53610076 MS.gene021020:CDS
TATCCATGGGTGCAGTGTAT+TGG 0.399336 1.4:+53609697 None:intergenic
ACTTCAGACAAGGCTGGTCT+AGG 0.399428 1.4:-53610305 MS.gene021020:CDS
GCAAGGGATATATCGGATAA+TGG 0.403725 1.4:+53610171 None:intergenic
AAAATCACGACGGTCCAGTT+TGG 0.405460 1.4:+53611625 None:intergenic
ATGCTATGATTGGTGGTGAT+TGG 0.409098 1.4:-53609819 MS.gene021020:CDS
TACTCCAATAATATCCAAAC+TGG 0.412151 1.4:-53611639 MS.gene021020:CDS
GGATGTTAACTCAGGATGTT+TGG 0.412783 1.4:-53611549 MS.gene021020:intron
TGCATGCTGCAAATCAGCTT+TGG 0.415627 1.4:+53612138 None:intergenic
CATAAGAAACAAGGCTGGAT+TGG 0.419848 1.4:-53610205 MS.gene021020:CDS
AACCAGACTTTGCCGTGGTA+TGG 0.440028 1.4:-53609952 MS.gene021020:intron
CACTATTGAATTGACTTACT+CGG 0.440432 1.4:-53611570 MS.gene021020:CDS
TTGATTACGTTGGATTTGCC+TGG 0.442541 1.4:-53611357 MS.gene021020:CDS
GTGTACAATTGAAGGTGATT+GGG 0.443885 1.4:-53611293 MS.gene021020:CDS
AAACCTATGGTCAGCGGCAG+TGG 0.455398 1.4:-53609667 MS.gene021020:CDS
GAACTTTAGGTCACATCTCC+AGG 0.457339 1.4:+53611339 None:intergenic
ACTCCTATGTGTACAATTGA+AGG 0.457401 1.4:-53611301 MS.gene021020:CDS
CGGCAACGCAAGGGATATAT+CGG 0.461190 1.4:+53610164 None:intergenic
CAGACATAGTGTCAAATTCA+AGG 0.463743 1.4:+53612037 None:intergenic
GACAAAGATAACACAGTCCT+TGG 0.465488 1.4:-53609733 MS.gene021020:CDS
TGTGTACAATTGAAGGTGAT+TGG 0.473160 1.4:-53611294 MS.gene021020:CDS
TCATCATTGCCATCTCACTT+GGG 0.476104 1.4:+53612070 None:intergenic
TTCGATAGACCTTGCGGTCA+CGG 0.478744 1.4:-53611233 MS.gene021020:CDS
CTGTGCGAAGGGACCTGTCT+CGG 0.479542 1.4:-53610962 MS.gene021020:CDS
TAGGTTTCACATAGTATCCA+TGG 0.490660 1.4:+53609683 None:intergenic
ATGGTCATGAGTAGTAGATT+AGG 0.500878 1.4:+53610225 None:intergenic
TGGGTCTATCTGAAATATGC+GGG 0.502250 1.4:-53610249 MS.gene021020:CDS
TTGGTCCGAACGGCTGTACA+TGG 0.502745 1.4:-53609882 MS.gene021020:CDS
ACAGTGAGGTCCGTATTTAT+CGG 0.505137 1.4:+53611382 None:intergenic
GAAGGGACCTGTCTCGGTTG+AGG 0.505460 1.4:-53610956 MS.gene021020:CDS
GCTTCTATATTCTGTTTCCA+AGG 0.505945 1.4:-53611106 MS.gene021020:intron
TCTGCATTTGTAGACGGCAC+AGG 0.506847 1.4:+53611172 None:intergenic
GACTTCTACAACATTGAGCT+TGG 0.507615 1.4:-53611755 MS.gene021020:CDS
CCTTGCTTGAGTGTGGTCGT+TGG 0.508319 1.4:-53612167 MS.gene021020:CDS
TCACCACCAATCATAGCATA+AGG 0.511917 1.4:+53609823 None:intergenic
ACTTCGTCTGATGTCCTCTC+GGG 0.511997 1.4:-53610075 MS.gene021020:CDS
CATCTCCATGTACAGCCGTT+CGG 0.512529 1.4:+53609877 None:intergenic
GAGTATGCTGGAACAGATGT+CGG 0.514049 1.4:-53609596 MS.gene021020:CDS
AATATGCCTTATGCTATGAT+TGG 0.515256 1.4:-53609829 MS.gene021020:CDS
TCCAATGAACAATGAGATTG+AGG 0.518221 1.4:-53611837 MS.gene021020:CDS
AGCTTTATATGAGGAAAGGT+TGG 0.518511 1.4:-53611790 MS.gene021020:CDS
GATAAGTCCTCAACCGAGAC+AGG 0.525131 1.4:+53610949 None:intergenic
CGACCACTGCCGCTGACCAT+AGG 0.527761 1.4:+53609664 None:intergenic
ACCCCAATACACTGCACCCA+TGG 0.533195 1.4:-53609700 MS.gene021020:CDS
CAGTGGTCGATATGTGTACC+AGG 0.539166 1.4:-53609650 MS.gene021020:CDS
ATTATTGGAGTAGTGTGAGC+AGG 0.541688 1.4:+53611650 None:intergenic
TAATGAACCTCGGCAACGCA+AGG 0.541750 1.4:+53610154 None:intergenic
TGATGTCCTCTCGGGCACTT+TGG 0.543138 1.4:-53610067 MS.gene021020:intron
TTGCAAGGCGAAGAGTATGC+TGG 0.545573 1.4:-53609608 MS.gene021020:CDS
ATAACATTGTAGATGGTGCA+TGG 0.547247 1.4:-53610269 MS.gene021020:CDS
CGAGGTTCATTACTTCATCA+GGG 0.547766 1.4:-53610143 MS.gene021020:CDS
CATATTATTTGCAACAGCGA+AGG 0.553325 1.4:+53609846 None:intergenic
CTTCAGACAAGGCTGGTCTA+GGG 0.553757 1.4:-53610304 MS.gene021020:CDS
CGTGTTACCTCCGATAAATA+CGG 0.556373 1.4:-53611392 MS.gene021020:CDS
AACGACCTTCGACAAACCTA+CGG 0.556786 1.4:+53611254 None:intergenic
AGTATGCTGGAACAGATGTC+GGG 0.557360 1.4:-53609595 MS.gene021020:CDS
CTTACGATTGTTGGTCCGAA+CGG 0.558198 1.4:-53609892 MS.gene021020:CDS
CTCACTGTCATTGATTACGT+TGG 0.558362 1.4:-53611367 MS.gene021020:CDS
TATATGAGGAAAGGTTGGTA+TGG 0.559929 1.4:-53611785 MS.gene021020:CDS
GATTTGCACATCGCAGAGGT+TGG 0.560790 1.4:-53609791 MS.gene021020:CDS
GGACTGTGTTATCTTTGTCA+TGG 0.561082 1.4:+53609737 None:intergenic
TCTTCTCCTCCGTGACCGCA+AGG 0.561112 1.4:+53611224 None:intergenic
TGGATACTATGTGAAACCTA+TGG 0.563204 1.4:-53609680 MS.gene021020:CDS
TCAGACTGCAATATGAACCT+TGG 0.563823 1.4:+53611130 None:intergenic
TGCAGTGTATTGGGGTATGT+CGG 0.565836 1.4:+53609707 None:intergenic
CTGCATTTGTAGACGGCACA+GGG 0.566431 1.4:+53611173 None:intergenic
TGATTAGAGGCATTGATCCA+AGG 0.567311 1.4:-53611147 MS.gene021020:CDS
ATATATCCCTTGCGTTGCCG+AGG 0.568869 1.4:-53610161 MS.gene021020:CDS
TGTGGTAGGTTTCTGTGGCA+AGG 0.569531 1.4:+53609915 None:intergenic
GACAAGCTTTATATGAGGAA+AGG 0.570103 1.4:-53611794 MS.gene021020:CDS
ATCTCACTTGGGGTATACGT+TGG 0.570410 1.4:+53612081 None:intergenic
TAACATTGTAGATGGTGCAT+GGG 0.570614 1.4:-53610268 MS.gene021020:CDS
ACTTACTCGGATGTTAACTC+AGG 0.572912 1.4:-53611557 MS.gene021020:CDS
GAAAGGTTGGTATGGACTGA+AGG 0.575278 1.4:-53611777 MS.gene021020:CDS
GAGGCGACAAGCTTTATATG+AGG 0.576586 1.4:-53611799 MS.gene021020:CDS
ACAAGGCTGGTCTAGGGTGA+AGG 0.576887 1.4:-53610298 MS.gene021020:CDS
CATCATTGCCATCTCACTTG+GGG 0.579124 1.4:+53612071 None:intergenic
AACGTATACCCCAAGTGAGA+TGG 0.579805 1.4:-53612079 MS.gene021020:CDS
AAATCTGTTGTTGATCGTCA+AGG 0.579813 1.4:+53611691 None:intergenic
ACAACATTGAGCTTGGTGCA+TGG 0.580204 1.4:-53611748 MS.gene021020:CDS
CCAACAATCGTAAGTGTGGT+AGG 0.580385 1.4:+53609901 None:intergenic
CGAGACAGGTCCCTTCGCAC+AGG 0.583465 1.4:+53610963 None:intergenic
ACGACCTTCGACAAACCTAC+GGG 0.584033 1.4:+53611255 None:intergenic
AGGTCTACTTCAGACAAGGC+TGG 0.585540 1.4:-53610311 MS.gene021020:CDS
ATCTGCTCCTTGCTTGAGTG+TGG 0.585624 1.4:-53612174 MS.gene021020:CDS
ATCAAATCTGCATTTGTAGA+CGG 0.590289 1.4:+53611166 None:intergenic
GCATGAAAATGTTGTAGGTG+GGG 0.592686 1.4:-53612118 MS.gene021020:CDS
TCACTATCTCAAATATTGCA+AGG 0.596203 1.4:-53609623 MS.gene021020:CDS
TGCATGAAAATGTTGTAGGT+GGG 0.596497 1.4:-53612119 MS.gene021020:CDS
ATGACCATAAGAAACAAGGC+TGG 0.597597 1.4:-53610210 MS.gene021020:CDS
CGACCTCGATCCTGTGCGAA+GGG 0.601460 1.4:-53610973 MS.gene021020:CDS
ATGCCTTATGCTATGATTGG+TGG 0.601798 1.4:-53609826 MS.gene021020:CDS
TTGGGGTATGTCGGAAACCA+AGG 0.606539 1.4:+53609716 None:intergenic
AATGAACCTCGGCAACGCAA+GGG 0.607154 1.4:+53610155 None:intergenic
AGCATGCATGAAAATGTTGT+AGG 0.609002 1.4:-53612123 MS.gene021020:CDS
TGTACAATTGAAGGTGATTG+GGG 0.612279 1.4:-53611292 MS.gene021020:CDS
GTAAGTGTGGTAGGTTTCTG+TGG 0.617237 1.4:+53609910 None:intergenic
CCAACGACCACACTCAAGCA+AGG 0.618711 1.4:+53612167 None:intergenic
GAGCAGATCACAATATTAGG+AGG 0.621127 1.4:+53612189 None:intergenic
AGGTTTCACATAGTATCCAT+GGG 0.622147 1.4:+53609684 None:intergenic
CAACAGCGAACTTAACTGCA+TGG 0.624703 1.4:+53609761 None:intergenic
CATGAAAATGTTGTAGGTGG+GGG 0.624750 1.4:-53612117 MS.gene021020:CDS
TCCATGGGTGCAGTGTATTG+GGG 0.627336 1.4:+53609699 None:intergenic
ATGCATGAAAATGTTGTAGG+TGG 0.627822 1.4:-53612120 MS.gene021020:CDS
ACCTGATTTGCACATCGCAG+AGG 0.634639 1.4:-53609795 MS.gene021020:CDS
GGACAATATGTAAGGCCCGT+AGG 0.636455 1.4:-53611270 MS.gene021020:CDS
TCACCTTCAATTGTACACAT+AGG 0.636668 1.4:+53611298 None:intergenic
ATGGGTCTATCTGAAATATG+CGG 0.636801 1.4:-53610250 MS.gene021020:CDS
ACGACCTCGATCCTGTGCGA+AGG 0.639634 1.4:-53610974 MS.gene021020:CDS
ATCTGCATTAGACATTGCCG+TGG 0.643012 1.4:-53611432 MS.gene021020:intron
GGTCCCTTCGCACAGGATCG+AGG 0.647508 1.4:+53610970 None:intergenic
TTCTGGCAGAAGCCATACCA+CGG 0.648051 1.4:+53609940 None:intergenic
GGCAAGGTCTACTTCAGACA+AGG 0.649008 1.4:-53610315 MS.gene021020:CDS
CCTGATGAAGTAATGAACCT+CGG 0.649312 1.4:+53610144 None:intergenic
CGCTTACAGAACCCAAACCA+CGG 0.655051 1.4:+53611415 None:intergenic
TTATTTAGCAGTTAAAGGCG+AGG 0.655685 1.4:-53610443 MS.gene021020:intron
GAGGTTCATTACTTCATCAG+GGG 0.659487 1.4:-53610142 MS.gene021020:CDS
CAAGTGAGATGGCAATGATG+AGG 0.660753 1.4:-53612068 MS.gene021020:CDS
ACTCATGACCATAAGAAACA+AGG 0.663177 1.4:-53610214 MS.gene021020:CDS
TCAAAATCTTGACAGATGTG+CGG 0.663839 1.4:+53610097 None:intergenic
CGGACCAACAATCGTAAGTG+TGG 0.667344 1.4:+53609897 None:intergenic
ATTTGAGATAGTGATTGACC+TGG 0.673697 1.4:+53609632 None:intergenic
GGGTCTATCTGAAATATGCG+GGG 0.673953 1.4:-53610248 MS.gene021020:CDS
TATATACCAAAGTGCCCGAG+AGG 0.678235 1.4:+53610061 None:intergenic
AAGGCCCGTAGGTTTGTCGA+AGG 0.678246 1.4:-53611259 MS.gene021020:CDS
TGTTTAACCAGACTTTGCCG+TGG 0.679547 1.4:-53609957 MS.gene021020:intron
GTGAGGTCCGTATTTATCGG+AGG 0.693002 1.4:+53611385 None:intergenic
AGGTCGTTCGATAGACCTTG+CGG 0.706168 1.4:-53611239 MS.gene021020:CDS
TATGTGAAACCTATGGTCAG+CGG 0.713139 1.4:-53609673 MS.gene021020:CDS
GAGGTTCGACTGTATCGCAG+AGG 0.730544 1.4:-53611818 MS.gene021020:CDS
CAACGTAATCAATGACAGTG+AGG 0.734984 1.4:+53611368 None:intergenic
GATAGACCTTGCGGTCACGG+AGG 0.760484 1.4:-53611230 MS.gene021020:CDS
GTACAATTGAAGGTGATTGG+GGG 0.819509 1.4:-53611291 MS.gene021020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACCATATAAATTCAT+TGG + chr1.4:53610773-53610792 None:intergenic 15.0%
!! GGTTAATATAATTAGATATT+TGG - chr1.4:53611758-53611777 MS.gene021020:CDS 15.0%
!! TACATTCTAATTTGAATATA+TGG - chr1.4:53611013-53611032 MS.gene021020:intron 15.0%
!!! TATGTTAACATTTTCTATTA+TGG - chr1.4:53611288-53611307 MS.gene021020:CDS 15.0%
!! AGAAATAAACAATAACACAA+CGG + chr1.4:53610286-53610305 None:intergenic 20.0%
!! ATGTTAACATAAATTTATGC+CGG + chr1.4:53611279-53611298 None:intergenic 20.0%
!! GATATTTATAACATTGTAGA+TGG - chr1.4:53611507-53611526 MS.gene021020:intron 20.0%
!!! AACTAACGTACAAATTTTTT+CGG + chr1.4:53611178-53611197 None:intergenic 20.0%
! ATTTCGTTCATTCGATTATA+AGG - chr1.4:53611783-53611802 MS.gene021020:CDS 25.0%
! GTTTCCTATCTAATATCATA+AGG - chr1.4:53611310-53611329 MS.gene021020:CDS 25.0%
! TTAGCATCAAACACATTTAT+TGG + chr1.4:53609831-53609850 None:intergenic 25.0%
! TTTCTGTTTGTGTTTAGTAA+CGG - chr1.4:53610315-53610334 MS.gene021020:CDS 25.0%
!! AAATTTTCACGACAACAATA+AGG - chr1.4:53610986-53611005 MS.gene021020:CDS 25.0%
!! ACAACAATGATATTGTTGTT+TGG + chr1.4:53611429-53611448 None:intergenic 25.0%
!! GGTATATAATTTGCACTAAT+TGG - chr1.4:53611737-53611756 MS.gene021020:CDS 25.0%
!! TATATGTTGTTTATTCTGTC+CGG - chr1.4:53610727-53610746 MS.gene021020:intron 25.0%
AACAACATATACTTCAGTTC+AGG + chr1.4:53610718-53610737 None:intergenic 30.0%
AAGGTTATCTTACTGTTTGT+TGG - chr1.4:53611802-53611821 MS.gene021020:CDS 30.0%
AATATGCCTTATGCTATGAT+TGG - chr1.4:53611954-53611973 MS.gene021020:intron 30.0%
ACAAATGCAGATTTGATTAG+AGG - chr1.4:53610623-53610642 MS.gene021020:intron 30.0%
ACAACATATACTTCAGTTCA+GGG + chr1.4:53610717-53610736 None:intergenic 30.0%
ACGAATAACAATCAAATTGC+CGG + chr1.4:53610749-53610768 None:intergenic 30.0%
AGTTATCATAAACTCTGTCT+AGG - chr1.4:53611135-53611154 MS.gene021020:CDS 30.0%
ATCAAATCTGCATTTGTAGA+CGG + chr1.4:53610620-53610639 None:intergenic 30.0%
CACACCTTATGATATTAGAT+AGG + chr1.4:53611317-53611336 None:intergenic 30.0%
CAGATATACTTTCTTATGTC+CGG - chr1.4:53611257-53611276 MS.gene021020:CDS 30.0%
GTTGAAGTTCAGAAAAAGAA+TGG - chr1.4:53611447-53611466 MS.gene021020:intron 30.0%
TACTCCAATAATATCCAAAC+TGG - chr1.4:53610144-53610163 MS.gene021020:CDS 30.0%
TAGTCTTTCAAAAAGCAGTT+AGG + chr1.4:53609890-53609909 None:intergenic 30.0%
TATGTCCTCATCTATTAGAA+TGG + chr1.4:53609801-53609820 None:intergenic 30.0%
TCACTATCTCAAATATTGCA+AGG - chr1.4:53612160-53612179 MS.gene021020:CDS 30.0%
TCTATTACTCTCTACAAATC+CGG + chr1.4:53611071-53611090 None:intergenic 30.0%
TTCGTGCCAATGAATTTATA+TGG - chr1.4:53610764-53610783 MS.gene021020:intron 30.0%
! AACAAAACTTGGTGGTTAAA+AGG + chr1.4:53610941-53610960 None:intergenic 30.0%
! ACTTCTTTTGCAAAACATGA+AGG + chr1.4:53611369-53611388 None:intergenic 30.0%
! CACTATTGAATTGACTTACT+CGG - chr1.4:53610213-53610232 MS.gene021020:CDS 30.0%
! TCATGTTTTGCAAAAGAAGT+AGG - chr1.4:53611369-53611388 MS.gene021020:CDS 30.0%
! TGTCCTTATTTAGCAGTTAA+AGG - chr1.4:53611335-53611354 MS.gene021020:CDS 30.0%
! TGTTAATTTTCGTAGGGAAT+GGG - chr1.4:53609857-53609876 MS.gene021020:CDS 30.0%
!! GATATATCGGATAATGGATA+TGG + chr1.4:53611609-53611628 None:intergenic 30.0%
!!! AACTGCTTTTTGAAAGACTA+TGG - chr1.4:53609890-53609909 MS.gene021020:CDS 30.0%
!!! ATTTGTACGTTAGTTTTGTG+CGG - chr1.4:53611183-53611202 MS.gene021020:CDS 30.0%
AAATCTGTTGTTGATCGTCA+AGG + chr1.4:53610095-53610114 None:intergenic 35.0%
AACGCAGCATAAACAAAACT+TGG + chr1.4:53610952-53610971 None:intergenic 35.0%
AAGGAGCAGATCACAATATT+AGG + chr1.4:53609600-53609619 None:intergenic 35.0%
ACCTCAATCTCATTGTTCAT+TGG + chr1.4:53609950-53609969 None:intergenic 35.0%
ACTCATGACCATAAGAAACA+AGG - chr1.4:53611569-53611588 MS.gene021020:CDS 35.0%
ACTCCTATGTGTACAATTGA+AGG - chr1.4:53610482-53610501 MS.gene021020:intron 35.0%
AGCATGCATGAAAATGTTGT+AGG - chr1.4:53609660-53609679 MS.gene021020:CDS 35.0%
AGGTTTCACATAGTATCCAT+GGG + chr1.4:53612102-53612121 None:intergenic 35.0%
AGTTCAGAAAAAGAATGGCA+AGG - chr1.4:53611452-53611471 MS.gene021020:intron 35.0%
ATAACATTGTAGATGGTGCA+TGG - chr1.4:53611514-53611533 MS.gene021020:intron 35.0%
ATCGTCAAGGTCATAAGATT+TGG + chr1.4:53610082-53610101 None:intergenic 35.0%
ATGCATGAAAATGTTGTAGG+TGG - chr1.4:53609663-53609682 MS.gene021020:CDS 35.0%
ATGGTCATGAGTAGTAGATT+AGG + chr1.4:53611561-53611580 None:intergenic 35.0%
CAGACATAGTGTCAAATTCA+AGG + chr1.4:53609749-53609768 None:intergenic 35.0%
CATATTATTTGCAACAGCGA+AGG + chr1.4:53611940-53611959 None:intergenic 35.0%
CATCAAACACATTTATTGGC+AGG + chr1.4:53609827-53609846 None:intergenic 35.0%
GCTTCTATATTCTGTTTCCA+AGG - chr1.4:53610677-53610696 MS.gene021020:intron 35.0%
GTGTACAATTGAAGGTGATT+GGG - chr1.4:53610490-53610509 MS.gene021020:intron 35.0%
TAACATTGTAGATGGTGCAT+GGG - chr1.4:53611515-53611534 MS.gene021020:intron 35.0%
TAGGTTTCACATAGTATCCA+TGG + chr1.4:53612103-53612122 None:intergenic 35.0%
TCAAAATCTTGACAGATGTG+CGG + chr1.4:53611689-53611708 None:intergenic 35.0%
TCACCTTCAATTGTACACAT+AGG + chr1.4:53610488-53610507 None:intergenic 35.0%
TCCAATGAACAATGAGATTG+AGG - chr1.4:53609946-53609965 MS.gene021020:CDS 35.0%
TCCTCATCTATTAGAATGGT+CGG + chr1.4:53609797-53609816 None:intergenic 35.0%
TCGCCTTTAACTGCTAAATA+AGG + chr1.4:53611341-53611360 None:intergenic 35.0%
TGCATGAAAATGTTGTAGGT+GGG - chr1.4:53609664-53609683 MS.gene021020:CDS 35.0%
TGGATACTATGTGAAACCTA+TGG - chr1.4:53612103-53612122 MS.gene021020:CDS 35.0%
TGTACAATTGAAGGTGATTG+GGG - chr1.4:53610491-53610510 MS.gene021020:intron 35.0%
TGTGTACAATTGAAGGTGAT+TGG - chr1.4:53610489-53610508 MS.gene021020:intron 35.0%
TTATTTAGCAGTTAAAGGCG+AGG - chr1.4:53611340-53611359 MS.gene021020:CDS 35.0%
! AGCTTTATATGAGGAAAGGT+TGG - chr1.4:53609993-53610012 MS.gene021020:intron 35.0%
! ATATGGTTGAAGAGTGTAAG+TGG - chr1.4:53611030-53611049 MS.gene021020:intron 35.0%
! ATGGGTCTATCTGAAATATG+CGG - chr1.4:53611533-53611552 MS.gene021020:intron 35.0%
! ATTTGAGATAGTGATTGACC+TGG + chr1.4:53612154-53612173 None:intergenic 35.0%
! CATGTCTGAAATAGAAACCA+TGG - chr1.4:53611219-53611238 MS.gene021020:CDS 35.0%
! GACAAGCTTTATATGAGGAA+AGG - chr1.4:53609989-53610008 MS.gene021020:intron 35.0%
! GATCAACAACAGATTTTTCG+AGG - chr1.4:53610099-53610118 MS.gene021020:CDS 35.0%
! GTGTTAATTTTCGTAGGGAA+TGG - chr1.4:53609856-53609875 MS.gene021020:CDS 35.0%
!! TATATGAGGAAAGGTTGGTA+TGG - chr1.4:53609998-53610017 MS.gene021020:intron 35.0%
!! TGCTTTTTGAAAGACTATGG+TGG - chr1.4:53609893-53609912 MS.gene021020:CDS 35.0%
ACAGTGAGGTCCGTATTTAT+CGG + chr1.4:53610404-53610423 None:intergenic 40.0%
ACTTACTCGGATGTTAACTC+AGG - chr1.4:53610226-53610245 MS.gene021020:CDS 40.0%
AGGATGTTTGGTATTCACTG+TGG - chr1.4:53610246-53610265 MS.gene021020:CDS 40.0%
ATGACCATAAGAAACAAGGC+TGG - chr1.4:53611573-53611592 MS.gene021020:CDS 40.0%
ATGCCTTATGCTATGATTGG+TGG - chr1.4:53611957-53611976 MS.gene021020:intron 40.0%
ATTAGACATTGCCGTGGTTT+GGG - chr1.4:53610357-53610376 MS.gene021020:CDS 40.0%
ATTATTGGAGTAGTGTGAGC+AGG + chr1.4:53610136-53610155 None:intergenic 40.0%
CAACGTAATCAATGACAGTG+AGG + chr1.4:53610418-53610437 None:intergenic 40.0%
CATAAGAAACAAGGCTGGAT+TGG - chr1.4:53611578-53611597 MS.gene021020:CDS 40.0%
CATGAAAATGTTGTAGGTGG+GGG - chr1.4:53609666-53609685 MS.gene021020:CDS 40.0%
CCTGATGAAGTAATGAACCT+CGG + chr1.4:53611642-53611661 None:intergenic 40.0%
CGAGGTTCATTACTTCATCA+GGG - chr1.4:53611640-53611659 MS.gene021020:CDS 40.0%
CGGTCCAGTTTGGATATTAT+TGG + chr1.4:53610151-53610170 None:intergenic 40.0%
CGTGTTACCTCCGATAAATA+CGG - chr1.4:53610391-53610410 MS.gene021020:CDS 40.0%
GACAAAGATAACACAGTCCT+TGG - chr1.4:53612050-53612069 MS.gene021020:CDS 40.0%
GACTTCTACAACATTGAGCT+TGG - chr1.4:53610028-53610047 MS.gene021020:intron 40.0%
GAGCAGATCACAATATTAGG+AGG + chr1.4:53609597-53609616 None:intergenic 40.0%
GAGGTTCATTACTTCATCAG+GGG - chr1.4:53611641-53611660 MS.gene021020:CDS 40.0%
GCAAGGGATATATCGGATAA+TGG + chr1.4:53611615-53611634 None:intergenic 40.0%
GCAGCATAAACAAAACTTGG+TGG + chr1.4:53610949-53610968 None:intergenic 40.0%
GCATGAAAATGTTGTAGGTG+GGG - chr1.4:53609665-53609684 MS.gene021020:CDS 40.0%
GGACTGTGTTATCTTTGTCA+TGG + chr1.4:53612049-53612068 None:intergenic 40.0%
GGATGTTAACTCAGGATGTT+TGG - chr1.4:53610234-53610253 MS.gene021020:CDS 40.0%
GGGTACAAAATGCATAACCT+TGG + chr1.4:53610697-53610716 None:intergenic 40.0%
GTACAATTGAAGGTGATTGG+GGG - chr1.4:53610492-53610511 MS.gene021020:intron 40.0%
GTGGATAAAATGATGCAGAC+CGG - chr1.4:53611049-53611068 MS.gene021020:intron 40.0%
TATGTGAAACCTATGGTCAG+CGG - chr1.4:53612110-53612129 MS.gene021020:CDS 40.0%
TCACCACCAATCATAGCATA+AGG + chr1.4:53611963-53611982 None:intergenic 40.0%
TCAGACTGCAATATGAACCT+TGG + chr1.4:53610656-53610675 None:intergenic 40.0%
TCATCATTGCCATCTCACTT+GGG + chr1.4:53609716-53609735 None:intergenic 40.0%
TCCGACCATTCTAATAGATG+AGG - chr1.4:53609793-53609812 MS.gene021020:CDS 40.0%
TGACAGATAAAGTTCAGCCA+TGG + chr1.4:53611239-53611258 None:intergenic 40.0%
TGATTGGGGGACAATATGTA+AGG - chr1.4:53610505-53610524 MS.gene021020:intron 40.0%
TGCGGAAAAAATGCACTAAC+TGG + chr1.4:53611671-53611690 None:intergenic 40.0%
TGTCACGCTGAATGAACTTT+AGG + chr1.4:53610460-53610479 None:intergenic 40.0%
TTGATTACGTTGGATTTGCC+TGG - chr1.4:53610426-53610445 MS.gene021020:CDS 40.0%
! AATTTTCGTAGGGAATGGGT+CGG - chr1.4:53609861-53609880 MS.gene021020:CDS 40.0%
! ATGCGCGTGTTAATTTTCGT+AGG - chr1.4:53609850-53609869 MS.gene021020:CDS 40.0%
! CTCACTGTCATTGATTACGT+TGG - chr1.4:53610416-53610435 MS.gene021020:CDS 40.0%
! TGCGCGTGTTAATTTTCGTA+GGG - chr1.4:53609851-53609870 MS.gene021020:CDS 40.0%
! TGGGTCTATCTGAAATATGC+GGG - chr1.4:53611534-53611553 MS.gene021020:intron 40.0%
!! ATGCTATGATTGGTGGTGAT+TGG - chr1.4:53611964-53611983 MS.gene021020:intron 40.0%
!! CAATCCAGCCTTGTTTCTTA+TGG + chr1.4:53611580-53611599 None:intergenic 40.0%
!! TGATTAGAGGCATTGATCCA+AGG - chr1.4:53610636-53610655 MS.gene021020:intron 40.0%
AAAATCACGACGGTCCAGTT+TGG + chr1.4:53610161-53610180 None:intergenic 45.0%
AACGACCTTCGACAAACCTA+CGG + chr1.4:53610532-53610551 None:intergenic 45.0%
AACGTATACCCCAAGTGAGA+TGG - chr1.4:53609704-53609723 MS.gene021020:CDS 45.0%
AATTCCCCCCAAAATCACGA+CGG + chr1.4:53610171-53610190 None:intergenic 45.0%
AGTATGCTGGAACAGATGTC+GGG - chr1.4:53612188-53612207 MS.gene021020:CDS 45.0%
ATCCATGGGTGCAGTGTATT+GGG + chr1.4:53612088-53612107 None:intergenic 45.0%
ATCTCACTTGGGGTATACGT+TGG + chr1.4:53609705-53609724 None:intergenic 45.0%
ATCTGCATTAGACATTGCCG+TGG - chr1.4:53610351-53610370 MS.gene021020:CDS 45.0%
CAACAGCGAACTTAACTGCA+TGG + chr1.4:53612025-53612044 None:intergenic 45.0%
CAAGTGAGATGGCAATGATG+AGG - chr1.4:53609715-53609734 MS.gene021020:CDS 45.0%
CATCATTGCCATCTCACTTG+GGG + chr1.4:53609715-53609734 None:intergenic 45.0%
CATTAGACATTGCCGTGGTT+TGG - chr1.4:53610356-53610375 MS.gene021020:CDS 45.0%
CCAACAATCGTAAGTGTGGT+AGG + chr1.4:53611885-53611904 None:intergenic 45.0%
CCGAGGTTCATTACTTCATC+AGG - chr1.4:53611639-53611658 MS.gene021020:CDS 45.0%
CCTACCACACTTACGATTGT+TGG - chr1.4:53611882-53611901 MS.gene021020:CDS 45.0%
CTCATCATTGCCATCTCACT+TGG + chr1.4:53609717-53609736 None:intergenic 45.0%
CTTACGATTGTTGGTCCGAA+CGG - chr1.4:53611891-53611910 MS.gene021020:CDS 45.0%
GAACTTTAGGTCACATCTCC+AGG + chr1.4:53610447-53610466 None:intergenic 45.0%
GAGTATGCTGGAACAGATGT+CGG - chr1.4:53612187-53612206 MS.gene021020:CDS 45.0%
GTAAGTGTGGTAGGTTTCTG+TGG + chr1.4:53611876-53611895 None:intergenic 45.0%
GTTTCTGTGGCAAGGATTTC+TGG + chr1.4:53611863-53611882 None:intergenic 45.0%
TATCCATGGGTGCAGTGTAT+TGG + chr1.4:53612089-53612108 None:intergenic 45.0%
TGCAGTGTATTGGGGTATGT+CGG + chr1.4:53612079-53612098 None:intergenic 45.0%
TGCATGCTGCAAATCAGCTT+TGG + chr1.4:53609648-53609667 None:intergenic 45.0%
TGTTTAACCAGACTTTGCCG+TGG - chr1.4:53611826-53611845 MS.gene021020:CDS 45.0%
! AAACTGGACCGTCGTGATTT+TGG - chr1.4:53610160-53610179 MS.gene021020:CDS 45.0%
! AACTGGACCGTCGTGATTTT+GGG - chr1.4:53610161-53610180 MS.gene021020:CDS 45.0%
! GAGGCGACAAGCTTTATATG+AGG - chr1.4:53609984-53610003 MS.gene021020:intron 45.0%
! GGGTCTATCTGAAATATGCG+GGG - chr1.4:53611535-53611554 MS.gene021020:intron 45.0%
! TATATACCAAAGTGCCCGAG+AGG + chr1.4:53611725-53611744 None:intergenic 45.0%
!! ACAACATTGAGCTTGGTGCA+TGG - chr1.4:53610035-53610054 MS.gene021020:intron 45.0%
!! GAAAGGTTGGTATGGACTGA+AGG - chr1.4:53610006-53610025 MS.gene021020:intron 45.0%
!! TCGTGATTTTGGGGGGAATT+TGG - chr1.4:53610171-53610190 MS.gene021020:CDS 45.0%
!!! TGTACGTTAGTTTTGTGCGG+TGG - chr1.4:53611186-53611205 MS.gene021020:CDS 45.0%
AACCAGACTTTGCCGTGGTA+TGG - chr1.4:53611831-53611850 MS.gene021020:CDS 50.0%
AATGAACCTCGGCAACGCAA+GGG + chr1.4:53611631-53611650 None:intergenic 50.0%
ACCTCTGCGATGTGCAAATC+AGG + chr1.4:53611992-53612011 None:intergenic 50.0%
ACGACCTTCGACAAACCTAC+GGG + chr1.4:53610531-53610550 None:intergenic 50.0%
ACTTCGTCTGATGTCCTCTC+GGG - chr1.4:53611708-53611727 MS.gene021020:CDS 50.0%
AGGTCGTTCGATAGACCTTG+CGG - chr1.4:53610544-53610563 MS.gene021020:intron 50.0%
AGGTCTACTTCAGACAAGGC+TGG - chr1.4:53611472-53611491 MS.gene021020:intron 50.0%
ATATATCCCTTGCGTTGCCG+AGG - chr1.4:53611622-53611641 MS.gene021020:CDS 50.0%
ATCTGCTCCTTGCTTGAGTG+TGG - chr1.4:53609609-53609628 MS.gene021020:CDS 50.0%
CAGTGGTCGATATGTGTACC+AGG - chr1.4:53612133-53612152 MS.gene021020:CDS 50.0%
CATCTCCATGTACAGCCGTT+CGG + chr1.4:53611909-53611928 None:intergenic 50.0%
CGCTTACAGAACCCAAACCA+CGG + chr1.4:53610371-53610390 None:intergenic 50.0%
CGGACCAACAATCGTAAGTG+TGG + chr1.4:53611889-53611908 None:intergenic 50.0%
CGGCAACGCAAGGGATATAT+CGG + chr1.4:53611622-53611641 None:intergenic 50.0%
CTGCATTTGTAGACGGCACA+GGG + chr1.4:53610613-53610632 None:intergenic 50.0%
GACTTCGTCTGATGTCCTCT+CGG - chr1.4:53611707-53611726 MS.gene021020:CDS 50.0%
GATAAGTCCTCAACCGAGAC+AGG + chr1.4:53610837-53610856 None:intergenic 50.0%
GATTTGCACATCGCAGAGGT+TGG - chr1.4:53611992-53612011 MS.gene021020:intron 50.0%
GGACAATATGTAAGGCCCGT+AGG - chr1.4:53610513-53610532 MS.gene021020:intron 50.0%
GGCAAGGTCTACTTCAGACA+AGG - chr1.4:53611468-53611487 MS.gene021020:intron 50.0%
GTGAGGTCCGTATTTATCGG+AGG + chr1.4:53610401-53610420 None:intergenic 50.0%
TAATGAACCTCGGCAACGCA+AGG + chr1.4:53611632-53611651 None:intergenic 50.0%
TCCATGGGTGCAGTGTATTG+GGG + chr1.4:53612087-53612106 None:intergenic 50.0%
TCTGCATTTGTAGACGGCAC+AGG + chr1.4:53610614-53610633 None:intergenic 50.0%
TGTGGTAGGTTTCTGTGGCA+AGG + chr1.4:53611871-53611890 None:intergenic 50.0%
TTCGATAGACCTTGCGGTCA+CGG - chr1.4:53610550-53610569 MS.gene021020:intron 50.0%
TTCTGGCAGAAGCCATACCA+CGG + chr1.4:53611846-53611865 None:intergenic 50.0%
TTGGGGTATGTCGGAAACCA+AGG + chr1.4:53612070-53612089 None:intergenic 50.0%
! ACCTGATTTGCACATCGCAG+AGG - chr1.4:53611988-53612007 MS.gene021020:intron 50.0%
! ACTGGACCGTCGTGATTTTG+GGG - chr1.4:53610162-53610181 MS.gene021020:CDS 50.0%
! TTGCAAGGCGAAGAGTATGC+TGG - chr1.4:53612175-53612194 MS.gene021020:CDS 50.0%
!! ACTTCAGACAAGGCTGGTCT+AGG - chr1.4:53611478-53611497 MS.gene021020:intron 50.0%
!! CTTCAGACAAGGCTGGTCTA+GGG - chr1.4:53611479-53611498 MS.gene021020:intron 50.0%
AAACCTATGGTCAGCGGCAG+TGG - chr1.4:53612116-53612135 MS.gene021020:CDS 55.0%
AAGGCCCGTAGGTTTGTCGA+AGG - chr1.4:53610524-53610543 MS.gene021020:intron 55.0%
ACCCCAATACACTGCACCCA+TGG - chr1.4:53612083-53612102 MS.gene021020:CDS 55.0%
AGCCATACCACGGCAAAGTC+TGG + chr1.4:53611836-53611855 None:intergenic 55.0%
CCAACGACCACACTCAAGCA+AGG + chr1.4:53609619-53609638 None:intergenic 55.0%
CCTTGCTTGAGTGTGGTCGT+TGG - chr1.4:53609616-53609635 MS.gene021020:CDS 55.0%
GAGGTTCGACTGTATCGCAG+AGG - chr1.4:53609965-53609984 MS.gene021020:intron 55.0%
TGATGTCCTCTCGGGCACTT+TGG - chr1.4:53611716-53611735 MS.gene021020:CDS 55.0%
TTGGTCCGAACGGCTGTACA+TGG - chr1.4:53611901-53611920 MS.gene021020:CDS 55.0%
! ACATCGCAGAGGTTGGTTGC+AGG - chr1.4:53611999-53612018 MS.gene021020:intron 55.0%
! CTGGACCGTCGTGATTTTGG+GGG - chr1.4:53610163-53610182 MS.gene021020:CDS 55.0%
! TGGACCGTCGTGATTTTGGG+GGG - chr1.4:53610164-53610183 MS.gene021020:CDS 55.0%
!! ACAAGGCTGGTCTAGGGTGA+AGG - chr1.4:53611485-53611504 MS.gene021020:intron 55.0%
ACGACCTCGATCCTGTGCGA+AGG - chr1.4:53610809-53610828 MS.gene021020:intron 60.0%
CGACCTCGATCCTGTGCGAA+GGG - chr1.4:53610810-53610829 MS.gene021020:intron 60.0%
CTGTGCGAAGGGACCTGTCT+CGG - chr1.4:53610821-53610840 MS.gene021020:intron 60.0%
GAAGGGACCTGTCTCGGTTG+AGG - chr1.4:53610827-53610846 MS.gene021020:intron 60.0%
GATAGACCTTGCGGTCACGG+AGG - chr1.4:53610553-53610572 MS.gene021020:intron 60.0%
TCTTCTCCTCCGTGACCGCA+AGG + chr1.4:53610562-53610581 None:intergenic 60.0%
CGACCACTGCCGCTGACCAT+AGG + chr1.4:53612122-53612141 None:intergenic 65.0%
CGAGACAGGTCCCTTCGCAC+AGG + chr1.4:53610823-53610842 None:intergenic 65.0%
GGTCCCTTCGCACAGGATCG+AGG + chr1.4:53610816-53610835 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 53609591 53612214 53609591 ID=MS.gene021020
chr1.4 mRNA 53609591 53612214 53609591 ID=MS.gene021020.t1;Parent=MS.gene021020
chr1.4 exon 53612038 53612214 53612038 ID=MS.gene021020.t1.exon1;Parent=MS.gene021020.t1
chr1.4 CDS 53612038 53612214 53612038 ID=cds.MS.gene021020.t1;Parent=MS.gene021020.t1
chr1.4 exon 53611550 53611933 53611550 ID=MS.gene021020.t1.exon2;Parent=MS.gene021020.t1
chr1.4 CDS 53611550 53611933 53611550 ID=cds.MS.gene021020.t1;Parent=MS.gene021020.t1
chr1.4 exon 53611107 53611443 53611107 ID=MS.gene021020.t1.exon3;Parent=MS.gene021020.t1
chr1.4 CDS 53611107 53611443 53611107 ID=cds.MS.gene021020.t1;Parent=MS.gene021020.t1
chr1.4 exon 53610926 53611005 53610926 ID=MS.gene021020.t1.exon4;Parent=MS.gene021020.t1
chr1.4 CDS 53610926 53611005 53610926 ID=cds.MS.gene021020.t1;Parent=MS.gene021020.t1
chr1.4 exon 53610068 53610454 53610068 ID=MS.gene021020.t1.exon5;Parent=MS.gene021020.t1
chr1.4 CDS 53610068 53610454 53610068 ID=cds.MS.gene021020.t1;Parent=MS.gene021020.t1
chr1.4 exon 53609591 53609968 53609591 ID=MS.gene021020.t1.exon6;Parent=MS.gene021020.t1
chr1.4 CDS 53609591 53609968 53609591 ID=cds.MS.gene021020.t1;Parent=MS.gene021020.t1
Gene Sequence

>MS.gene021020

ATGCCTCCTAATATTGTGATCTGCTCCTTGCTTGAGTGTGGTCGTTGGTTTTATCCAAAGCTGATTTGCAGCATGCATGAAAATGTTGTAGGTGGGGGTAACGACTTTCATCCAACGTATACCCCAAGTGAGATGGCAATGATGAGGACATACTTCCTTGAATTTGACACTATGTCTGTAAGTGTTGTTAAATAATTTTGTCTCCGACCATTCTAATAGATGAGGACATACTTCCTGCCAATAAATGTGTTTGATGCTAATGCGCGTGTTAATTTTCGTAGGGAATGGGTCGGATGCCTAACTGCTTTTTGAAAGACTATGGTGGTTATATTGAAGACTACGTTATGTTGCGAGATCCAATGAACAATGAGATTGAGGTTCGACTGTATCGCAGAGGCGACAAGCTTTATATGAGGAAAGGTTGGTATGGACTGAAGGACTTCTACAACATTGAGCTTGGTGCATGGATAGACTTGACATATGAAAGACCAAATCTTATGACCTTGACGATCAACAACAGATTTTTCGAGGAAATTTTGTATCCTGCTCACACTACTCCAATAATATCCAAACTGGACCGTCGTGATTTTGGGGGGAATTTGGATGATTTTTTTGAGACATTCACTATTGAATTGACTTACTCGGATGTTAACTCAGGATGTTTGGTATTCACTGTGGATTGCTTTATATTTCCGTTGTGTTATTGTTTATTTCTTAAATGATATTTCTGTTTGTGTTTAGTAACGGTGTTTATTATTTCATCTGCATTAGACATTGCCGTGGTTTGGGTTCTGTAAGCGCGTGTTACCTCCGATAAATACGGACCTCACTGTCATTGATTACGTTGGATTTGCCTGGAGATGTGACCTAAAGTTCATTCAGCGTGACAAGACTCCTATGTGTACAATTGAAGGTGATTGGGGGACAATATGTAAGGCCCGTAGGTTTGTCGAAGGTCGTTCGATAGACCTTGCGGTCACGGAGGAGAAGAATAATTATGTGCTTTACTTGAAATTTATCCCTGTGCCGTCTACAAATGCAGATTTGATTAGAGGCATTGATCCAAGGTTCATATTGCAGTCTGATGCTTCTATATTCTGTTTCCAAGGTTATGCATTTTGTACCCTGAACTGAAGTATATGTTGTTTATTCTGTCCGGCAATTTGATTGTTATTCGTGCCAATGAATTTATATGGTTTTTTATTACAGACTCTGCTAACGACCTCGATCCTGTGCGAAGGGACCTGTCTCGGTTGAGGACTTATCGTCTCGAGCTAGATAGCGACATTGTGAGATCTCTGTCTTCTTATTAGTGCAATTGTACTAAAAATTTGTGTAATTTATGTGCCTTTTAACCACCAAGTTTTGTTTATGCTGCGTTGTTCTTAAATTTTAAAATTTTCACGACAACAATAAGGATAGTACATTCTAATTTGAATATATGGTTGAAGAGTGTAAGTGGATAAAATGATGCAGACCGGATTTGTAGAGAGTAATAGAAGTTTTTGCATATACGAATCTGAGATTCAGACATAATTGATAATAGTTATCATAAACTCTGTCTAGGATTGCTGATCTCAGACGCCGAAAAAATTTGTACGTTAGTTTTGTGCGGTGGTTATTGTATTCATGTCTGAAATAGAAACCATGGCTGAACTTTATCTGTCAGATATACTTTCTTATGTCCGGCATAAATTTATGTTAACATTTTCTATTATGGTTTCCTATCTAATATCATAAGGTGTGTCCTTATTTAGCAGTTAAAGGCGAGGTTACCTTCATGTTTTGCAAAAGAAGTAGGCGTGCATATTGATGATCATGTTATGCTTCGTGATCCAAACAACAATATCATTGTTGTTGAAGTTCAGAAAAAGAATGGCAAGGTCTACTTCAGACAAGGCTGGTCTAGGGTGAAGGATATTTATAACATTGTAGATGGTGCATGGGTCTATCTGAAATATGCGGGGCCTAATCTACTACTCATGACCATAAGAAACAAGGCTGGATTGGAGATACCATATCCATTATCCGATATATCCCTTGCGTTGCCGAGGTTCATTACTTCATCAGGGGAGAGCCAGTTAGTGCATTTTTTCCGCACATCTGTCAAGATTTTGACTTCGTCTGATGTCCTCTCGGGCACTTTGGTATATAATTTGCACTAATTGGTTAATATAATTAGATATTTGGTTATTTCGTTCATTCGATTATAAGGTTATCTTACTGTTTGTTGGTTGTTTAACCAGACTTTGCCGTGGTATGGCTTCTGCCAGAAATCCTTGCCACAGAAACCTACCACACTTACGATTGTTGGTCCGAACGGCTGTACATGGAGATGTGATCTGACCTTCGCTGTTGCAAATAATATGCCTTATGCTATGATTGGTGGTGATTGGAACCTGATTTGCACATCGCAGAGGTTGGTTGCAGGCCATGCAGTTAAGTTCGCTGTTGTCCATGACAAAGATAACACAGTCCTTGGTTTCCGACATACCCCAATACACTGCACCCATGGATACTATGTGAAACCTATGGTCAGCGGCAGTGGTCGATATGTGTACCAGGTCAATCACTATCTCAAATATTGCAAGGCGAAGAGTATGCTGGAACAGATGTCGGGATGA
Protein sequence

>MS.gene021020.t1

MPPNIVICSLLECGRWFYPKLICSMHENVVGGGNDFHPTYTPSEMAMMRTYFLEFDTMSGMGRMPNCFLKDYGGYIEDYVMLRDPMNNEIEVRLYRRGDKLYMRKGWYGLKDFYNIELGAWIDLTYERPNLMTLTINNRFFEEILYPAHTTPIISKLDRRDFGGNLDDFFETFTIELTYSDVNSGCLTLPWFGFCKRVLPPINTDLTVIDYVGFAWRCDLKFIQRDKTPMCTIEGDWGTICKARRFVEGRSIDLAVTEEKNNYVLYLKFIPVPSTNADLIRGIDPRFILQSDASIFCFQDSANDLDPVRRDLSRLRTYRLELDSDILKARLPSCFAKEVGVHIDDHVMLRDPNNNIIVVEVQKKNGKVYFRQGWSRVKDIYNIVDGAWVYLKYAGPNLLLMTIRNKAGLEIPYPLSDISLALPRFITSSGESQLVHFFRTSVKILTSSDVLSGTLTLPWYGFCQKSLPQKPTTLTIVGPNGCTWRCDLTFAVANNMPYAMIGGDWNLICTSQRLVAGHAVKFAVVHDKDNTVLGFRHTPIHCTHGYYVKPMVSGSGRYVYQVNHYLKYCKAKSMLEQMSG