AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021025

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021025.t1 MTR_0091s0080 33.883 546 245 7 80 610 28 472 2.07e-106 330
MS.gene021025.t1 MTR_0091s0090 42.512 207 118 1 396 602 4 209 8.77e-55 187
MS.gene021025.t1 MTR_0091s0090 36.946 203 125 1 128 327 3 205 8.38e-40 147
MS.gene021025.t1 MTR_1g052720 34.470 264 146 6 80 320 36 295 1.93e-48 171
MS.gene021025.t1 MTR_1g052720 34.432 273 161 4 345 603 34 302 3.24e-47 168
MS.gene021025.t1 MTR_6g465600 36.694 248 142 4 337 570 28 274 4.85e-44 160
MS.gene021025.t1 MTR_6g465600 35.565 239 139 4 80 304 39 276 4.85e-44 160
MS.gene021025.t1 MTR_0246s0040 34.091 264 156 7 354 616 72 318 2.33e-34 133
MS.gene021025.t1 MTR_0246s0040 33.028 218 133 3 87 304 72 276 1.54e-32 128
MS.gene021025.t1 MTR_1g105780 29.437 231 150 2 86 304 40 269 2.42e-29 117
MS.gene021025.t1 MTR_1g105780 29.302 215 140 2 351 554 38 251 6.11e-26 108
MS.gene021025.t1 MTR_7g110090 28.632 234 154 2 86 307 39 271 5.88e-29 116
MS.gene021025.t1 MTR_7g110090 27.490 251 165 5 337 573 22 269 6.42e-24 102
MS.gene021025.t1 MTR_1g105765 29.004 231 151 2 86 304 40 269 6.95e-29 116
MS.gene021025.t1 MTR_1g105765 29.767 215 139 2 351 554 38 251 3.68e-26 108
MS.gene021025.t1 MTR_3g070250 29.707 239 150 2 86 307 44 281 1.31e-26 110
MS.gene021025.t1 MTR_3g070250 28.512 242 151 6 336 558 26 264 7.09e-20 90.5
MS.gene021025.t1 MTR_4g032560 29.060 234 153 2 86 307 68 300 1.02e-25 108
MS.gene021025.t1 MTR_4g032560 27.881 269 180 5 314 569 28 295 1.39e-21 96.3
MS.gene021025.t1 MTR_1g084880 29.289 239 151 2 86 307 39 276 1.03e-25 107
MS.gene021025.t1 MTR_1g084880 28.384 229 143 4 351 561 37 262 1.36e-18 86.7
MS.gene021025.t1 MTR_3g048970 28.870 239 152 2 86 307 39 276 3.83e-25 105
MS.gene021025.t1 MTR_3g048970 27.948 229 144 4 351 561 37 262 1.68e-18 86.7
MS.gene021025.t1 MTR_4g032580 28.632 234 154 2 86 307 68 300 4.42e-25 106
MS.gene021025.t1 MTR_4g032580 27.881 269 180 5 314 569 28 295 1.23e-21 96.3
MS.gene021025.t1 MTR_3g085990 29.730 222 130 4 86 307 40 235 8.25e-25 103
MS.gene021025.t1 MTR_3g085990 26.316 228 140 6 335 561 21 221 2.95e-15 76.3
MS.gene021025.t1 MTR_1g023840 40.594 101 60 0 471 571 10 110 8.01e-22 92.4
MS.gene021025.t1 MTR_1g023840 44.681 94 52 0 206 299 13 106 1.30e-21 91.7
MS.gene021025.t1 MTR_7g050355 26.022 269 133 3 337 604 28 231 3.35e-21 98.2
MS.gene021025.t1 MTR_1g047540 26.840 231 147 5 86 307 39 256 6.54e-19 90.5
MS.gene021025.t1 MTR_1g047540 27.530 247 155 8 337 573 22 254 1.11e-16 83.6
MS.gene021025.t1 MTR_4g062370 27.165 254 163 6 310 551 8 251 6.95e-19 91.3
MS.gene021025.t1 MTR_4g062370 27.854 219 141 4 86 290 43 258 2.62e-18 89.4
MS.gene021025.t1 MTR_2g100360 25.792 221 142 3 85 286 38 255 4.21e-18 85.1
MS.gene021025.t1 MTR_2g100360 25.221 226 152 3 351 560 37 261 4.81e-16 79.3
MS.gene021025.t1 MTR_5g066660 26.210 248 162 6 87 332 40 268 5.66e-18 85.1
MS.gene021025.t1 MTR_5g066660 26.484 219 140 5 351 567 37 236 1.46e-12 68.9
MS.gene021025.t1 MTR_2g038740 28.272 191 120 1 86 259 39 229 1.64e-17 87.0
MS.gene021025.t1 MTR_2g038740 27.413 259 160 5 351 582 37 294 2.68e-17 86.3
MS.gene021025.t1 MTR_8g064960 41.892 74 42 1 226 299 27 99 2.48e-17 78.6
MS.gene021025.t1 MTR_8g064930 67.347 49 16 0 359 407 2 50 4.08e-17 75.9
MS.gene021025.t1 MTR_3g452180 26.374 182 121 2 138 307 7 187 8.14e-17 79.3
MS.gene021025.t1 MTR_3g452180 25.824 182 119 4 405 573 7 185 8.57e-14 70.9
MS.gene021025.t1 MTR_4g117740 28.571 154 93 2 97 250 61 197 1.48e-16 79.0
MS.gene021025.t1 MTR_4g117740 27.815 151 91 2 368 518 65 197 1.50e-13 70.1
MS.gene021025.t1 MTR_1g087870 25.000 240 153 6 101 319 2 235 5.98e-16 78.6
MS.gene021025.t1 MTR_1g087870 25.114 219 147 4 368 570 2 219 8.39e-16 78.2
MS.gene021025.t1 MTR_6g033605 37.349 83 51 1 226 307 30 112 1.91e-14 70.5
MS.gene021025.t1 MTR_6g033605 32.927 82 54 1 494 574 30 111 1.50e-12 65.1
MS.gene021025.t1 MTR_0521s0010 26.519 181 102 2 87 250 34 200 2.02e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 164 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTGTGGCAAGGATTTC+TGG 0.139608 4.4:-43266701 None:intergenic
AAACTGGACCGTCGTGATTT+TGG 0.142859 4.4:+43265001 MS.gene021025:CDS
ACAATATTAGGAGGCATAAA+AGG 0.192691 4.4:-43264426 None:intergenic
CAATCCAGCCTTGTTTCTTA+TGG 0.243933 4.4:-43266418 None:intergenic
CGGTCCAGTTTGGATATTAT+TGG 0.264347 4.4:-43264989 None:intergenic
ATCCATGGGTGCAGTGTATT+GGG 0.290852 4.4:-43266926 None:intergenic
CATTAGACATTGCCGTGGTT+TGG 0.309583 4.4:+43265197 MS.gene021025:intron
AAGGAGCAGATCACAATATT+AGG 0.318102 4.4:-43264438 None:intergenic
CTCATCATTGCCATCTCACT+TGG 0.320277 4.4:-43264555 None:intergenic
TGTCACGCTGAATGAACTTT+AGG 0.324413 4.4:-43265298 None:intergenic
ACAAATGCAGATTTGATTAG+AGG 0.328195 4.4:+43265464 MS.gene021025:CDS
ATTAGACATTGCCGTGGTTT+GGG 0.336423 4.4:+43265198 MS.gene021025:intron
CCGAGGTTCATTACTTCATC+AGG 0.337428 4.4:+43266480 MS.gene021025:CDS
GATATATCGGATAATGGATA+TGG 0.364913 4.4:-43266447 None:intergenic
CCTACCACACTTACGATTGT+TGG 0.366401 4.4:+43266723 MS.gene021025:CDS
ACCTCTGCGATGTGCAAATC+AGG 0.368835 4.4:-43266830 None:intergenic
ATCGTCAAGGTCATAAGATT+TGG 0.374229 4.4:-43264920 None:intergenic
ACATCGCAGAGGTTGGTTGC+AGG 0.375369 4.4:+43266840 MS.gene021025:CDS
ACAACAATGATATTGTTGTT+TGG 0.386359 4.4:-43266267 None:intergenic
ACCTCAATCTCATTGTTCAT+TGG 0.386489 4.4:-43264788 None:intergenic
GATATTTATAACATTGTAGA+TGG 0.391221 4.4:+43266348 MS.gene021025:CDS
GACTTCGTCTGATGTCCTCT+CGG 0.399084 4.4:+43266548 MS.gene021025:CDS
TATCCATGGGTGCAGTGTAT+TGG 0.399336 4.4:-43266927 None:intergenic
ACTTCAGACAAGGCTGGTCT+AGG 0.399428 4.4:+43266319 MS.gene021025:CDS
GCAAGGGATATATCGGATAA+TGG 0.403725 4.4:-43266453 None:intergenic
AAAATCACGACGGTCCAGTT+TGG 0.405460 4.4:-43264999 None:intergenic
ATGCTATGATTGGTGGTGAT+TGG 0.409098 4.4:+43266805 MS.gene021025:CDS
TACTCCAATAATATCCAAAC+TGG 0.412151 4.4:+43264985 MS.gene021025:CDS
GGATGTTAACTCAGGATGTT+TGG 0.412783 4.4:+43265075 MS.gene021025:CDS
TGCATGCTGCAAATCAGCTT+TGG 0.415627 4.4:-43264486 None:intergenic
CATAAGAAACAAGGCTGGAT+TGG 0.419848 4.4:+43266419 MS.gene021025:CDS
AACCAGACTTTGCCGTGGTA+TGG 0.440028 4.4:+43266672 MS.gene021025:intron
CACTATTGAATTGACTTACT+CGG 0.440432 4.4:+43265054 MS.gene021025:CDS
TTGATTACGTTGGATTTGCC+TGG 0.442541 4.4:+43265267 MS.gene021025:CDS
GTGTACAATTGAAGGTGATT+GGG 0.443885 4.4:+43265331 MS.gene021025:CDS
AAACCTATGGTCAGCGGCAG+TGG 0.455398 4.4:+43266957 MS.gene021025:CDS
GAACTTTAGGTCACATCTCC+AGG 0.457339 4.4:-43265285 None:intergenic
ACTCCTATGTGTACAATTGA+AGG 0.457401 4.4:+43265323 MS.gene021025:CDS
CGGCAACGCAAGGGATATAT+CGG 0.461190 4.4:-43266460 None:intergenic
CAGACATAGTGTCAAATTCA+AGG 0.463743 4.4:-43264587 None:intergenic
GACAAAGATAACACAGTCCT+TGG 0.465488 4.4:+43266891 MS.gene021025:CDS
TGTGTACAATTGAAGGTGAT+TGG 0.473160 4.4:+43265330 MS.gene021025:CDS
AGGCTTCTTGTTACTCTGAT+GGG 0.475086 4.4:-43264394 None:intergenic
TCATCATTGCCATCTCACTT+GGG 0.476104 4.4:-43264554 None:intergenic
TTCGATAGACCTTGCGGTCA+CGG 0.478744 4.4:+43265391 MS.gene021025:CDS
CTGTGCGAAGGGACCTGTCT+CGG 0.479542 4.4:+43265662 MS.gene021025:CDS
AAGGCTTCTTGTTACTCTGA+TGG 0.487578 4.4:-43264395 None:intergenic
TAGGTTTCACATAGTATCCA+TGG 0.490660 4.4:-43266941 None:intergenic
ATGGTCATGAGTAGTAGATT+AGG 0.500878 4.4:-43266399 None:intergenic
TGGGTCTATCTGAAATATGC+GGG 0.502250 4.4:+43266375 MS.gene021025:CDS
TTGGTCCGAACGGCTGTACA+TGG 0.502745 4.4:+43266742 MS.gene021025:CDS
CATCTCACCATGTCTGACTT+AGG 0.502842 4.4:+43263677 None:intergenic
ACAGTGAGGTCCGTATTTAT+CGG 0.505137 4.4:-43265242 None:intergenic
GAAGGGACCTGTCTCGGTTG+AGG 0.505460 4.4:+43265668 MS.gene021025:CDS
GCTTCTATATTCTGTTTCCA+AGG 0.505945 4.4:+43265518 MS.gene021025:CDS
TCTGCATTTGTAGACGGCAC+AGG 0.506847 4.4:-43265452 None:intergenic
GACTTCTACAACATTGAGCT+TGG 0.507615 4.4:+43264869 MS.gene021025:CDS
CCTTGCTTGAGTGTGGTCGT+TGG 0.508319 4.4:+43264457 MS.gene021025:CDS
TCACCACCAATCATAGCATA+AGG 0.511917 4.4:-43266801 None:intergenic
ACTTCGTCTGATGTCCTCTC+GGG 0.511997 4.4:+43266549 MS.gene021025:CDS
CATCTCCATGTACAGCCGTT+CGG 0.512529 4.4:-43266747 None:intergenic
GAGTATGCTGGAACAGATGT+CGG 0.514049 4.4:+43267028 MS.gene021025:CDS
AATATGCCTTATGCTATGAT+TGG 0.515256 4.4:+43266795 MS.gene021025:CDS
TCCAATGAACAATGAGATTG+AGG 0.518221 4.4:+43264787 MS.gene021025:CDS
AGCTTTATATGAGGAAAGGT+TGG 0.518511 4.4:+43264834 MS.gene021025:CDS
GATAAGTCCTCAACCGAGAC+AGG 0.525131 4.4:-43265675 None:intergenic
CAATATTAGGAGGCATAAAA+GGG 0.527022 4.4:-43264425 None:intergenic
CGACCACTGCCGCTGACCAT+AGG 0.527761 4.4:-43266960 None:intergenic
ACCCCAATACACTGCACCCA+TGG 0.533195 4.4:+43266924 MS.gene021025:CDS
TGCACAAGGAATGCTGTCAT+TGG 0.536531 4.4:+43263733 MS.gene021025:CDS
CAGTGGTCGATATGTGTACC+AGG 0.539166 4.4:+43266974 MS.gene021025:CDS
ATTATTGGAGTAGTGTGAGC+AGG 0.541688 4.4:-43264974 None:intergenic
TAATGAACCTCGGCAACGCA+AGG 0.541750 4.4:-43266470 None:intergenic
TGATGTCCTCTCGGGCACTT+TGG 0.543138 4.4:+43266557 MS.gene021025:CDS
TTGCAAGGCGAAGAGTATGC+TGG 0.545573 4.4:+43267016 MS.gene021025:CDS
ATAACATTGTAGATGGTGCA+TGG 0.547247 4.4:+43266355 MS.gene021025:CDS
CGAGGTTCATTACTTCATCA+GGG 0.547766 4.4:+43266481 MS.gene021025:CDS
TCACCATGTCTGACTTAGGT+GGG 0.551890 4.4:+43263681 None:intergenic
CATATTATTTGCAACAGCGA+AGG 0.553325 4.4:-43266778 None:intergenic
CTTCAGACAAGGCTGGTCTA+GGG 0.553757 4.4:+43266320 MS.gene021025:CDS
CAAGGAATGCTGTCATTGGC+AGG 0.555729 4.4:+43263737 MS.gene021025:CDS
CGTGTTACCTCCGATAAATA+CGG 0.556373 4.4:+43265232 MS.gene021025:CDS
AACGACCTTCGACAAACCTA+CGG 0.556786 4.4:-43265370 None:intergenic
AGTATGCTGGAACAGATGTC+GGG 0.557360 4.4:+43267029 MS.gene021025:CDS
CTTACGATTGTTGGTCCGAA+CGG 0.558198 4.4:+43266732 MS.gene021025:CDS
CTCACTGTCATTGATTACGT+TGG 0.558362 4.4:+43265257 MS.gene021025:CDS
TATATGAGGAAAGGTTGGTA+TGG 0.559929 4.4:+43264839 MS.gene021025:CDS
GATTTGCACATCGCAGAGGT+TGG 0.560790 4.4:+43266833 MS.gene021025:CDS
GGACTGTGTTATCTTTGTCA+TGG 0.561082 4.4:-43266887 None:intergenic
TCTTCTCCTCCGTGACCGCA+AGG 0.561112 4.4:-43265400 None:intergenic
TGGATACTATGTGAAACCTA+TGG 0.563204 4.4:+43266944 MS.gene021025:CDS
TCAGACTGCAATATGAACCT+TGG 0.563823 4.4:-43265494 None:intergenic
TGCAGTGTATTGGGGTATGT+CGG 0.565836 4.4:-43266917 None:intergenic
CTGCATTTGTAGACGGCACA+GGG 0.566431 4.4:-43265451 None:intergenic
TGATTAGAGGCATTGATCCA+AGG 0.567311 4.4:+43265477 MS.gene021025:CDS
ATATATCCCTTGCGTTGCCG+AGG 0.568869 4.4:+43266463 MS.gene021025:CDS
TGTGGTAGGTTTCTGTGGCA+AGG 0.569531 4.4:-43266709 None:intergenic
GACAAGCTTTATATGAGGAA+AGG 0.570103 4.4:+43264830 MS.gene021025:CDS
ATCTCACTTGGGGTATACGT+TGG 0.570410 4.4:-43264543 None:intergenic
TAACATTGTAGATGGTGCAT+GGG 0.570614 4.4:+43266356 MS.gene021025:CDS
CTCACCATGTCTGACTTAGG+TGG 0.572352 4.4:+43263680 None:intergenic
ACTTACTCGGATGTTAACTC+AGG 0.572912 4.4:+43265067 MS.gene021025:CDS
GAAAGGTTGGTATGGACTGA+AGG 0.575278 4.4:+43264847 MS.gene021025:CDS
GAGGCGACAAGCTTTATATG+AGG 0.576586 4.4:+43264825 MS.gene021025:CDS
ACAAGGCTGGTCTAGGGTGA+AGG 0.576887 4.4:+43266326 MS.gene021025:CDS
CATCATTGCCATCTCACTTG+GGG 0.579124 4.4:-43264553 None:intergenic
AACGTATACCCCAAGTGAGA+TGG 0.579805 4.4:+43264545 MS.gene021025:CDS
AAATCTGTTGTTGATCGTCA+AGG 0.579813 4.4:-43264933 None:intergenic
ACAACATTGAGCTTGGTGCA+TGG 0.580204 4.4:+43264876 MS.gene021025:CDS
CCAACAATCGTAAGTGTGGT+AGG 0.580385 4.4:-43266723 None:intergenic
CGAGACAGGTCCCTTCGCAC+AGG 0.583465 4.4:-43265661 None:intergenic
ACGACCTTCGACAAACCTAC+GGG 0.584033 4.4:-43265369 None:intergenic
AGGTCTACTTCAGACAAGGC+TGG 0.585540 4.4:+43266313 MS.gene021025:CDS
ATCTGCTCCTTGCTTGAGTG+TGG 0.585624 4.4:+43264450 MS.gene021025:CDS
ATCAAATCTGCATTTGTAGA+CGG 0.590289 4.4:-43265458 None:intergenic
GCATGAAAATGTTGTAGGTG+GGG 0.592686 4.4:+43264506 MS.gene021025:CDS
TCACTATCTCAAATATTGCA+AGG 0.596203 4.4:+43267001 MS.gene021025:CDS
TGCATGAAAATGTTGTAGGT+GGG 0.596497 4.4:+43264505 MS.gene021025:CDS
ATGACCATAAGAAACAAGGC+TGG 0.597597 4.4:+43266414 MS.gene021025:CDS
CGACCTCGATCCTGTGCGAA+GGG 0.601460 4.4:+43265651 MS.gene021025:CDS
ATGCCTTATGCTATGATTGG+TGG 0.601798 4.4:+43266798 MS.gene021025:CDS
TTGGGGTATGTCGGAAACCA+AGG 0.606539 4.4:-43266908 None:intergenic
AATGAACCTCGGCAACGCAA+GGG 0.607154 4.4:-43266469 None:intergenic
AACGCTTTGGATGCTGCACA+AGG 0.608033 4.4:+43263719 MS.gene021025:CDS
AGCATGCATGAAAATGTTGT+AGG 0.609002 4.4:+43264501 MS.gene021025:CDS
TGTACAATTGAAGGTGATTG+GGG 0.612279 4.4:+43265332 MS.gene021025:CDS
GTAAGTGTGGTAGGTTTCTG+TGG 0.617237 4.4:-43266714 None:intergenic
CCAACGACCACACTCAAGCA+AGG 0.618711 4.4:-43264457 None:intergenic
GAGCAGATCACAATATTAGG+AGG 0.621127 4.4:-43264435 None:intergenic
AGGTTTCACATAGTATCCAT+GGG 0.622147 4.4:-43266940 None:intergenic
CAACAGCGAACTTAACTGCA+TGG 0.624703 4.4:-43266863 None:intergenic
CATGAAAATGTTGTAGGTGG+GGG 0.624750 4.4:+43264507 MS.gene021025:CDS
TCCATGGGTGCAGTGTATTG+GGG 0.627336 4.4:-43266925 None:intergenic
ATGCATGAAAATGTTGTAGG+TGG 0.627822 4.4:+43264504 MS.gene021025:CDS
ACCTGATTTGCACATCGCAG+AGG 0.634639 4.4:+43266829 MS.gene021025:CDS
GGACAATATGTAAGGCCCGT+AGG 0.636455 4.4:+43265354 MS.gene021025:CDS
TCACCTTCAATTGTACACAT+AGG 0.636668 4.4:-43265326 None:intergenic
ATGGGTCTATCTGAAATATG+CGG 0.636801 4.4:+43266374 MS.gene021025:CDS
ACGACCTCGATCCTGTGCGA+AGG 0.639634 4.4:+43265650 MS.gene021025:CDS
ATCTGCATTAGACATTGCCG+TGG 0.643012 4.4:+43265192 MS.gene021025:intron
GGTCCCTTCGCACAGGATCG+AGG 0.647508 4.4:-43265654 None:intergenic
TTCTGGCAGAAGCCATACCA+CGG 0.648051 4.4:-43266684 None:intergenic
GGCAAGGTCTACTTCAGACA+AGG 0.649008 4.4:+43266309 MS.gene021025:CDS
CCTGATGAAGTAATGAACCT+CGG 0.649312 4.4:-43266480 None:intergenic
CGCTTACAGAACCCAAACCA+CGG 0.655051 4.4:-43265209 None:intergenic
TTATTTAGCAGTTAAAGGCG+AGG 0.655685 4.4:+43266181 MS.gene021025:intron
GAGGTTCATTACTTCATCAG+GGG 0.659487 4.4:+43266482 MS.gene021025:CDS
CAAGTGAGATGGCAATGATG+AGG 0.660753 4.4:+43264556 MS.gene021025:CDS
ACTCATGACCATAAGAAACA+AGG 0.663177 4.4:+43266410 MS.gene021025:CDS
TCAAAATCTTGACAGATGTG+CGG 0.663839 4.4:-43266527 None:intergenic
CGGACCAACAATCGTAAGTG+TGG 0.667344 4.4:-43266727 None:intergenic
ATTTGAGATAGTGATTGACC+TGG 0.673697 4.4:-43266992 None:intergenic
GGGTCTATCTGAAATATGCG+GGG 0.673953 4.4:+43266376 MS.gene021025:CDS
TATATACCAAAGTGCCCGAG+AGG 0.678235 4.4:-43266563 None:intergenic
AAGGCCCGTAGGTTTGTCGA+AGG 0.678246 4.4:+43265365 MS.gene021025:CDS
TGTTTAACCAGACTTTGCCG+TGG 0.679547 4.4:+43266667 MS.gene021025:intron
AAACCCACCTAAGTCAGACA+TGG 0.685362 4.4:-43263684 None:intergenic
GTGAGGTCCGTATTTATCGG+AGG 0.693002 4.4:-43265239 None:intergenic
AGGTCGTTCGATAGACCTTG+CGG 0.706168 4.4:+43265385 MS.gene021025:CDS
TATGTGAAACCTATGGTCAG+CGG 0.713139 4.4:+43266951 MS.gene021025:CDS
GAGGTTCGACTGTATCGCAG+AGG 0.730544 4.4:+43264806 MS.gene021025:CDS
CAACGTAATCAATGACAGTG+AGG 0.734984 4.4:-43265256 None:intergenic
GATAGACCTTGCGGTCACGG+AGG 0.760484 4.4:+43265394 MS.gene021025:CDS
GTACAATTGAAGGTGATTGG+GGG 0.819509 4.4:+43265333 MS.gene021025:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGCATAATATAAAATATAAA+TGG + chr4.4:43264292-43264311 MS.gene021025:intron 10.0%
!! AAAAAACCATATAAATTCAT+TGG - chr4.4:43265614-43265633 None:intergenic 15.0%
!! AAAAGATTGAAAAAAACATT+TGG - chr4.4:43264361-43264380 None:intergenic 15.0%
!! GGTTAATATAATTAGATATT+TGG + chr4.4:43266599-43266618 MS.gene021025:intron 15.0%
!! TACATTCTAATTTGAATATA+TGG + chr4.4:43265854-43265873 MS.gene021025:intron 15.0%
!!! TATGTTAACATTTTCTATTA+TGG + chr4.4:43266129-43266148 MS.gene021025:intron 15.0%
!!! TTATTTTGATTTTTAATGCA+TGG + chr4.4:43263969-43263988 MS.gene021025:intron 15.0%
!! AGAAATAAACAATAACACAA+CGG - chr4.4:43265127-43265146 None:intergenic 20.0%
!! ATGTTAACATAAATTTATGC+CGG - chr4.4:43266120-43266139 None:intergenic 20.0%
!! GATATTTATAACATTGTAGA+TGG + chr4.4:43266348-43266367 MS.gene021025:CDS 20.0%
!! GTATCTTAAGAATACAAAAT+TGG - chr4.4:43264073-43264092 None:intergenic 20.0%
!! TACATGTTTACTCTTTATTA+TGG + chr4.4:43264090-43264109 MS.gene021025:intron 20.0%
!! TTATGAGGAAAAAAAATCTA+TGG + chr4.4:43263818-43263837 MS.gene021025:intron 20.0%
!!! AACTAACGTACAAATTTTTT+CGG - chr4.4:43266019-43266038 None:intergenic 20.0%
!!! TTTAGGACAAAAAATATCTA+GGG + chr4.4:43264116-43264135 MS.gene021025:intron 20.0%
! AAAATAATGATATGCAACAC+AGG - chr4.4:43263956-43263975 None:intergenic 25.0%
! AAATAATGATATGCAACACA+GGG - chr4.4:43263955-43263974 None:intergenic 25.0%
! AACATATTGTTAACATGCTA+AGG - chr4.4:43263910-43263929 None:intergenic 25.0%
! ATTTCGTTCATTCGATTATA+AGG + chr4.4:43266624-43266643 MS.gene021025:intron 25.0%
! GTTTCCTATCTAATATCATA+AGG + chr4.4:43266151-43266170 MS.gene021025:intron 25.0%
! TTAGCATCAAACACATTTAT+TGG - chr4.4:43264672-43264691 None:intergenic 25.0%
! TTTCTGTTTGTGTTTAGTAA+CGG + chr4.4:43265156-43265175 MS.gene021025:intron 25.0%
!! AAATTTTCACGACAACAATA+AGG + chr4.4:43265827-43265846 MS.gene021025:intron 25.0%
!! ACAACAATGATATTGTTGTT+TGG - chr4.4:43266270-43266289 None:intergenic 25.0%
!! GGTATATAATTTGCACTAAT+TGG + chr4.4:43266578-43266597 MS.gene021025:intron 25.0%
!! TATATGTTGTTTATTCTGTC+CGG + chr4.4:43265568-43265587 MS.gene021025:intron 25.0%
!!! AACTTGTTATAAACATGCAA+AGG - chr4.4:43264329-43264348 None:intergenic 25.0%
!!! CTAGATATTTTTTGTCCTAA+AGG - chr4.4:43264117-43264136 None:intergenic 25.0%
!!! CTTTAGGACAAAAAATATCT+AGG + chr4.4:43264115-43264134 MS.gene021025:intron 25.0%
AACAACATATACTTCAGTTC+AGG - chr4.4:43265559-43265578 None:intergenic 30.0%
AAGGTTATCTTACTGTTTGT+TGG + chr4.4:43266643-43266662 MS.gene021025:intron 30.0%
AATATGCCTTATGCTATGAT+TGG + chr4.4:43266795-43266814 MS.gene021025:CDS 30.0%
ACAAATGCAGATTTGATTAG+AGG + chr4.4:43265464-43265483 MS.gene021025:CDS 30.0%
ACAACATATACTTCAGTTCA+GGG - chr4.4:43265558-43265577 None:intergenic 30.0%
ACGAATAACAATCAAATTGC+CGG - chr4.4:43265590-43265609 None:intergenic 30.0%
ACTCTTTATTATGGTCCTTT+AGG + chr4.4:43264099-43264118 MS.gene021025:intron 30.0%
AGTTATCATAAACTCTGTCT+AGG + chr4.4:43265976-43265995 MS.gene021025:intron 30.0%
ATCAAACATAACGATATCAG+AGG - chr4.4:43264266-43264285 None:intergenic 30.0%
ATCAAATCTGCATTTGTAGA+CGG - chr4.4:43265461-43265480 None:intergenic 30.0%
CACACCTTATGATATTAGAT+AGG - chr4.4:43266158-43266177 None:intergenic 30.0%
CAGATATACTTTCTTATGTC+CGG + chr4.4:43266098-43266117 MS.gene021025:intron 30.0%
GTTGAAGTTCAGAAAAAGAA+TGG + chr4.4:43266288-43266307 MS.gene021025:CDS 30.0%
TACTCCAATAATATCCAAAC+TGG + chr4.4:43264985-43265004 MS.gene021025:CDS 30.0%
TAGTCTTTCAAAAAGCAGTT+AGG - chr4.4:43264731-43264750 None:intergenic 30.0%
TATGTCCTCATCTATTAGAA+TGG - chr4.4:43264642-43264661 None:intergenic 30.0%
TCACTATCTCAAATATTGCA+AGG + chr4.4:43267001-43267020 MS.gene021025:CDS 30.0%
TCTATTACTCTCTACAAATC+CGG - chr4.4:43265912-43265931 None:intergenic 30.0%
TTCGTGCCAATGAATTTATA+TGG + chr4.4:43265605-43265624 MS.gene021025:intron 30.0%
! AACAAAACTTGGTGGTTAAA+AGG - chr4.4:43265782-43265801 None:intergenic 30.0%
! ACAATATTAGGAGGCATAAA+AGG - chr4.4:43264429-43264448 None:intergenic 30.0%
! ACTTCTTTTGCAAAACATGA+AGG - chr4.4:43266210-43266229 None:intergenic 30.0%
! CAATATTAGGAGGCATAAAA+GGG - chr4.4:43264428-43264447 None:intergenic 30.0%
! CACTATTGAATTGACTTACT+CGG + chr4.4:43265054-43265073 MS.gene021025:CDS 30.0%
! TCATGTTTTGCAAAAGAAGT+AGG + chr4.4:43266210-43266229 MS.gene021025:CDS 30.0%
! TGTCCTTATTTAGCAGTTAA+AGG + chr4.4:43266176-43266195 MS.gene021025:intron 30.0%
! TGTTAATTTTCGTAGGGAAT+GGG + chr4.4:43264698-43264717 MS.gene021025:intron 30.0%
!! GATATATCGGATAATGGATA+TGG - chr4.4:43266450-43266469 None:intergenic 30.0%
!!! AACTGCTTTTTGAAAGACTA+TGG + chr4.4:43264731-43264750 MS.gene021025:CDS 30.0%
!!! ATTTGTACGTTAGTTTTGTG+CGG + chr4.4:43266024-43266043 MS.gene021025:intron 30.0%
AAATCTGTTGTTGATCGTCA+AGG - chr4.4:43264936-43264955 None:intergenic 35.0%
AACGCAGCATAAACAAAACT+TGG - chr4.4:43265793-43265812 None:intergenic 35.0%
AAGGAGCAGATCACAATATT+AGG - chr4.4:43264441-43264460 None:intergenic 35.0%
ACCTCAATCTCATTGTTCAT+TGG - chr4.4:43264791-43264810 None:intergenic 35.0%
ACTCATGACCATAAGAAACA+AGG + chr4.4:43266410-43266429 MS.gene021025:CDS 35.0%
ACTCCTATGTGTACAATTGA+AGG + chr4.4:43265323-43265342 MS.gene021025:CDS 35.0%
AGCATGCATGAAAATGTTGT+AGG + chr4.4:43264501-43264520 MS.gene021025:CDS 35.0%
AGGTTTCACATAGTATCCAT+GGG - chr4.4:43266943-43266962 None:intergenic 35.0%
AGTTCAGAAAAAGAATGGCA+AGG + chr4.4:43266293-43266312 MS.gene021025:CDS 35.0%
ATAACATTGTAGATGGTGCA+TGG + chr4.4:43266355-43266374 MS.gene021025:CDS 35.0%
ATCGTCAAGGTCATAAGATT+TGG - chr4.4:43264923-43264942 None:intergenic 35.0%
ATGCATGAAAATGTTGTAGG+TGG + chr4.4:43264504-43264523 MS.gene021025:CDS 35.0%
ATGGTCATGAGTAGTAGATT+AGG - chr4.4:43266402-43266421 None:intergenic 35.0%
CAGACATAGTGTCAAATTCA+AGG - chr4.4:43264590-43264609 None:intergenic 35.0%
CATAAACAACCACAGTAAAG+AGG - chr4.4:43263803-43263822 None:intergenic 35.0%
CATATTATTTGCAACAGCGA+AGG - chr4.4:43266781-43266800 None:intergenic 35.0%
CATCAAACACATTTATTGGC+AGG - chr4.4:43264668-43264687 None:intergenic 35.0%
CTTTACTGTGGTTGTTTATG+AGG + chr4.4:43263803-43263822 MS.gene021025:intron 35.0%
GCTTCTATATTCTGTTTCCA+AGG + chr4.4:43265518-43265537 MS.gene021025:CDS 35.0%
GGCATAAAAGGGAAAAAGTA+AGG - chr4.4:43264417-43264436 None:intergenic 35.0%
GTGTACAATTGAAGGTGATT+GGG + chr4.4:43265331-43265350 MS.gene021025:CDS 35.0%
TAACATTGTAGATGGTGCAT+GGG + chr4.4:43266356-43266375 MS.gene021025:CDS 35.0%
TAGGTTTCACATAGTATCCA+TGG - chr4.4:43266944-43266963 None:intergenic 35.0%
TCAAAATCTTGACAGATGTG+CGG - chr4.4:43266530-43266549 None:intergenic 35.0%
TCACCTTCAATTGTACACAT+AGG - chr4.4:43265329-43265348 None:intergenic 35.0%
TCCAATGAACAATGAGATTG+AGG + chr4.4:43264787-43264806 MS.gene021025:CDS 35.0%
TCCTCATCTATTAGAATGGT+CGG - chr4.4:43264638-43264657 None:intergenic 35.0%
TCGCCTTTAACTGCTAAATA+AGG - chr4.4:43266182-43266201 None:intergenic 35.0%
TGCATGAAAATGTTGTAGGT+GGG + chr4.4:43264505-43264524 MS.gene021025:CDS 35.0%
TGGATACTATGTGAAACCTA+TGG + chr4.4:43266944-43266963 MS.gene021025:CDS 35.0%
TGTACAATTGAAGGTGATTG+GGG + chr4.4:43265332-43265351 MS.gene021025:CDS 35.0%
TGTGTACAATTGAAGGTGAT+TGG + chr4.4:43265330-43265349 MS.gene021025:CDS 35.0%
TTATTTAGCAGTTAAAGGCG+AGG + chr4.4:43266181-43266200 MS.gene021025:intron 35.0%
! AGCTTTATATGAGGAAAGGT+TGG + chr4.4:43264834-43264853 MS.gene021025:CDS 35.0%
! ATATGGTTGAAGAGTGTAAG+TGG + chr4.4:43265871-43265890 MS.gene021025:intron 35.0%
! ATGGGTCTATCTGAAATATG+CGG + chr4.4:43266374-43266393 MS.gene021025:CDS 35.0%
! ATTTGAGATAGTGATTGACC+TGG - chr4.4:43266995-43267014 None:intergenic 35.0%
! CATGTCTGAAATAGAAACCA+TGG + chr4.4:43266060-43266079 MS.gene021025:intron 35.0%
! GACAAGCTTTATATGAGGAA+AGG + chr4.4:43264830-43264849 MS.gene021025:CDS 35.0%
! GATCAACAACAGATTTTTCG+AGG + chr4.4:43264940-43264959 MS.gene021025:CDS 35.0%
! GTGTTAATTTTCGTAGGGAA+TGG + chr4.4:43264697-43264716 MS.gene021025:intron 35.0%
!! TATATGAGGAAAGGTTGGTA+TGG + chr4.4:43264839-43264858 MS.gene021025:CDS 35.0%
!! TGCTTTTTGAAAGACTATGG+TGG + chr4.4:43264734-43264753 MS.gene021025:CDS 35.0%
!!! TGTTTTAACTGGAAACGCTT+TGG + chr4.4:43263706-43263725 MS.gene021025:CDS 35.0%
!!! TTAGGTGGGTTTGTTTTAAC+TGG + chr4.4:43263695-43263714 MS.gene021025:CDS 35.0%
AAGGCTTCTTGTTACTCTGA+TGG - chr4.4:43264398-43264417 None:intergenic 40.0%
ACAGTGAGGTCCGTATTTAT+CGG - chr4.4:43265245-43265264 None:intergenic 40.0%
ACATAACGATATCAGAGGCA+TGG - chr4.4:43264261-43264280 None:intergenic 40.0%
ACTTACTCGGATGTTAACTC+AGG + chr4.4:43265067-43265086 MS.gene021025:CDS 40.0%
AGGATGTTTGGTATTCACTG+TGG + chr4.4:43265087-43265106 MS.gene021025:intron 40.0%
AGGCTTCTTGTTACTCTGAT+GGG - chr4.4:43264397-43264416 None:intergenic 40.0%
ATGACCATAAGAAACAAGGC+TGG + chr4.4:43266414-43266433 MS.gene021025:CDS 40.0%
ATGCCTTATGCTATGATTGG+TGG + chr4.4:43266798-43266817 MS.gene021025:CDS 40.0%
ATTAGACATTGCCGTGGTTT+GGG + chr4.4:43265198-43265217 MS.gene021025:intron 40.0%
ATTATTGGAGTAGTGTGAGC+AGG - chr4.4:43264977-43264996 None:intergenic 40.0%
CAACGTAATCAATGACAGTG+AGG - chr4.4:43265259-43265278 None:intergenic 40.0%
CATAAGAAACAAGGCTGGAT+TGG + chr4.4:43266419-43266438 MS.gene021025:CDS 40.0%
CATGAAAATGTTGTAGGTGG+GGG + chr4.4:43264507-43264526 MS.gene021025:CDS 40.0%
CCTGATGAAGTAATGAACCT+CGG - chr4.4:43266483-43266502 None:intergenic 40.0%
CCTTAGCAAGTTACCAGTAT+AGG + chr4.4:43264213-43264232 MS.gene021025:intron 40.0%
CGAGGTTCATTACTTCATCA+GGG + chr4.4:43266481-43266500 MS.gene021025:CDS 40.0%
CGGTCCAGTTTGGATATTAT+TGG - chr4.4:43264992-43265011 None:intergenic 40.0%
CGTGTTACCTCCGATAAATA+CGG + chr4.4:43265232-43265251 MS.gene021025:CDS 40.0%
GACAAAGATAACACAGTCCT+TGG + chr4.4:43266891-43266910 MS.gene021025:CDS 40.0%
GACATGCAAAGCTATGTTCT+AGG - chr4.4:43264004-43264023 None:intergenic 40.0%
GACTTCTACAACATTGAGCT+TGG + chr4.4:43264869-43264888 MS.gene021025:CDS 40.0%
GAGCAGATCACAATATTAGG+AGG - chr4.4:43264438-43264457 None:intergenic 40.0%
GAGGTTCATTACTTCATCAG+GGG + chr4.4:43266482-43266501 MS.gene021025:CDS 40.0%
GCAAGGGATATATCGGATAA+TGG - chr4.4:43266456-43266475 None:intergenic 40.0%
GCAGCATAAACAAAACTTGG+TGG - chr4.4:43265790-43265809 None:intergenic 40.0%
GCATGAAAATGTTGTAGGTG+GGG + chr4.4:43264506-43264525 MS.gene021025:CDS 40.0%
GGACTGTGTTATCTTTGTCA+TGG - chr4.4:43266890-43266909 None:intergenic 40.0%
GGATGTTAACTCAGGATGTT+TGG + chr4.4:43265075-43265094 MS.gene021025:CDS 40.0%
GGGTACAAAATGCATAACCT+TGG - chr4.4:43265538-43265557 None:intergenic 40.0%
GTACAATTGAAGGTGATTGG+GGG + chr4.4:43265333-43265352 MS.gene021025:CDS 40.0%
GTGGATAAAATGATGCAGAC+CGG + chr4.4:43265890-43265909 MS.gene021025:intron 40.0%
TATGTGAAACCTATGGTCAG+CGG + chr4.4:43266951-43266970 MS.gene021025:CDS 40.0%
TCACCACCAATCATAGCATA+AGG - chr4.4:43266804-43266823 None:intergenic 40.0%
TCAGACTGCAATATGAACCT+TGG - chr4.4:43265497-43265516 None:intergenic 40.0%
TCATCATTGCCATCTCACTT+GGG - chr4.4:43264557-43264576 None:intergenic 40.0%
TCCGACCATTCTAATAGATG+AGG + chr4.4:43264634-43264653 MS.gene021025:intron 40.0%
TGACAGATAAAGTTCAGCCA+TGG - chr4.4:43266080-43266099 None:intergenic 40.0%
TGATTGGGGGACAATATGTA+AGG + chr4.4:43265346-43265365 MS.gene021025:CDS 40.0%
TGCATGTTACCTCTTTACTG+TGG + chr4.4:43263791-43263810 MS.gene021025:intron 40.0%
TGCGGAAAAAATGCACTAAC+TGG - chr4.4:43266512-43266531 None:intergenic 40.0%
TGTCACGCTGAATGAACTTT+AGG - chr4.4:43265301-43265320 None:intergenic 40.0%
TTGATTACGTTGGATTTGCC+TGG + chr4.4:43265267-43265286 MS.gene021025:CDS 40.0%
! AATTTTCGTAGGGAATGGGT+CGG + chr4.4:43264702-43264721 MS.gene021025:intron 40.0%
! ATGCGCGTGTTAATTTTCGT+AGG + chr4.4:43264691-43264710 MS.gene021025:intron 40.0%
! CTCACTGTCATTGATTACGT+TGG + chr4.4:43265257-43265276 MS.gene021025:CDS 40.0%
! TGCGCGTGTTAATTTTCGTA+GGG + chr4.4:43264692-43264711 MS.gene021025:intron 40.0%
! TGGGTCTATCTGAAATATGC+GGG + chr4.4:43266375-43266394 MS.gene021025:CDS 40.0%
!! ATGCTATGATTGGTGGTGAT+TGG + chr4.4:43266805-43266824 MS.gene021025:CDS 40.0%
!! CAATCCAGCCTTGTTTCTTA+TGG - chr4.4:43266421-43266440 None:intergenic 40.0%
!! CCTATACTGGTAACTTGCTA+AGG - chr4.4:43264216-43264235 None:intergenic 40.0%
!! TGATTAGAGGCATTGATCCA+AGG + chr4.4:43265477-43265496 MS.gene021025:CDS 40.0%
AAAATCACGACGGTCCAGTT+TGG - chr4.4:43265002-43265021 None:intergenic 45.0%
AACGACCTTCGACAAACCTA+CGG - chr4.4:43265373-43265392 None:intergenic 45.0%
AACGTATACCCCAAGTGAGA+TGG + chr4.4:43264545-43264564 MS.gene021025:CDS 45.0%
AATTCCCCCCAAAATCACGA+CGG - chr4.4:43265012-43265031 None:intergenic 45.0%
AGTATGCTGGAACAGATGTC+GGG + chr4.4:43267029-43267048 MS.gene021025:CDS 45.0%
ATCCATGGGTGCAGTGTATT+GGG - chr4.4:43266929-43266948 None:intergenic 45.0%
ATCTCACTTGGGGTATACGT+TGG - chr4.4:43264546-43264565 None:intergenic 45.0%
ATCTGCATTAGACATTGCCG+TGG + chr4.4:43265192-43265211 MS.gene021025:intron 45.0%
CAACAGCGAACTTAACTGCA+TGG - chr4.4:43266866-43266885 None:intergenic 45.0%
CAAGTGAGATGGCAATGATG+AGG + chr4.4:43264556-43264575 MS.gene021025:CDS 45.0%
CATCATTGCCATCTCACTTG+GGG - chr4.4:43264556-43264575 None:intergenic 45.0%
CATTAGACATTGCCGTGGTT+TGG + chr4.4:43265197-43265216 MS.gene021025:intron 45.0%
CCAACAATCGTAAGTGTGGT+AGG - chr4.4:43266726-43266745 None:intergenic 45.0%
CCGAGGTTCATTACTTCATC+AGG + chr4.4:43266480-43266499 MS.gene021025:CDS 45.0%
CCTACCACACTTACGATTGT+TGG + chr4.4:43266723-43266742 MS.gene021025:CDS 45.0%
CGCTGTCATAGAACCTATAC+TGG - chr4.4:43264229-43264248 None:intergenic 45.0%
CTCATCATTGCCATCTCACT+TGG - chr4.4:43264558-43264577 None:intergenic 45.0%
CTTACGATTGTTGGTCCGAA+CGG + chr4.4:43266732-43266751 MS.gene021025:CDS 45.0%
GAACTTTAGGTCACATCTCC+AGG - chr4.4:43265288-43265307 None:intergenic 45.0%
GAGTATGCTGGAACAGATGT+CGG + chr4.4:43267028-43267047 MS.gene021025:CDS 45.0%
GTAAGTGTGGTAGGTTTCTG+TGG - chr4.4:43266717-43266736 None:intergenic 45.0%
GTTTCTGTGGCAAGGATTTC+TGG - chr4.4:43266704-43266723 None:intergenic 45.0%
TATCCATGGGTGCAGTGTAT+TGG - chr4.4:43266930-43266949 None:intergenic 45.0%
TGCACAAGGAATGCTGTCAT+TGG + chr4.4:43263733-43263752 MS.gene021025:CDS 45.0%
TGCAGTGTATTGGGGTATGT+CGG - chr4.4:43266920-43266939 None:intergenic 45.0%
TGCATGCTGCAAATCAGCTT+TGG - chr4.4:43264489-43264508 None:intergenic 45.0%
TGTTTAACCAGACTTTGCCG+TGG + chr4.4:43266667-43266686 MS.gene021025:intron 45.0%
! AAACTGGACCGTCGTGATTT+TGG + chr4.4:43265001-43265020 MS.gene021025:CDS 45.0%
! AACTGGACCGTCGTGATTTT+GGG + chr4.4:43265002-43265021 MS.gene021025:CDS 45.0%
! GAGGCGACAAGCTTTATATG+AGG + chr4.4:43264825-43264844 MS.gene021025:CDS 45.0%
! GGGTCTATCTGAAATATGCG+GGG + chr4.4:43266376-43266395 MS.gene021025:CDS 45.0%
! TATATACCAAAGTGCCCGAG+AGG - chr4.4:43266566-43266585 None:intergenic 45.0%
! TTCTTGTTACTCTGATGGGC+TGG - chr4.4:43264393-43264412 None:intergenic 45.0%
!! ACAACATTGAGCTTGGTGCA+TGG + chr4.4:43264876-43264895 MS.gene021025:CDS 45.0%
!! GAAAGGTTGGTATGGACTGA+AGG + chr4.4:43264847-43264866 MS.gene021025:CDS 45.0%
!! TCGTGATTTTGGGGGGAATT+TGG + chr4.4:43265012-43265031 MS.gene021025:CDS 45.0%
!! TCTTGTTACTCTGATGGGCT+GGG - chr4.4:43264392-43264411 None:intergenic 45.0%
!!! TGTACGTTAGTTTTGTGCGG+TGG + chr4.4:43266027-43266046 MS.gene021025:intron 45.0%
AACCAGACTTTGCCGTGGTA+TGG + chr4.4:43266672-43266691 MS.gene021025:intron 50.0%
AATGAACCTCGGCAACGCAA+GGG - chr4.4:43266472-43266491 None:intergenic 50.0%
ACCTCTGCGATGTGCAAATC+AGG - chr4.4:43266833-43266852 None:intergenic 50.0%
ACGACCTTCGACAAACCTAC+GGG - chr4.4:43265372-43265391 None:intergenic 50.0%
ACTTCGTCTGATGTCCTCTC+GGG + chr4.4:43266549-43266568 MS.gene021025:CDS 50.0%
AGGTCGTTCGATAGACCTTG+CGG + chr4.4:43265385-43265404 MS.gene021025:CDS 50.0%
AGGTCTACTTCAGACAAGGC+TGG + chr4.4:43266313-43266332 MS.gene021025:CDS 50.0%
ATATATCCCTTGCGTTGCCG+AGG + chr4.4:43266463-43266482 MS.gene021025:CDS 50.0%
ATCTGCTCCTTGCTTGAGTG+TGG + chr4.4:43264450-43264469 MS.gene021025:CDS 50.0%
CAAGGAATGCTGTCATTGGC+AGG + chr4.4:43263737-43263756 MS.gene021025:CDS 50.0%
CAGTGGTCGATATGTGTACC+AGG + chr4.4:43266974-43266993 MS.gene021025:CDS 50.0%
CATCTCCATGTACAGCCGTT+CGG - chr4.4:43266750-43266769 None:intergenic 50.0%
CGCTTACAGAACCCAAACCA+CGG - chr4.4:43265212-43265231 None:intergenic 50.0%
CGGACCAACAATCGTAAGTG+TGG - chr4.4:43266730-43266749 None:intergenic 50.0%
CGGCAACGCAAGGGATATAT+CGG - chr4.4:43266463-43266482 None:intergenic 50.0%
CTGCATTTGTAGACGGCACA+GGG - chr4.4:43265454-43265473 None:intergenic 50.0%
GACTTCGTCTGATGTCCTCT+CGG + chr4.4:43266548-43266567 MS.gene021025:CDS 50.0%
GATAAGTCCTCAACCGAGAC+AGG - chr4.4:43265678-43265697 None:intergenic 50.0%
GATTTGCACATCGCAGAGGT+TGG + chr4.4:43266833-43266852 MS.gene021025:CDS 50.0%
GGACAATATGTAAGGCCCGT+AGG + chr4.4:43265354-43265373 MS.gene021025:CDS 50.0%
GGCAAGGTCTACTTCAGACA+AGG + chr4.4:43266309-43266328 MS.gene021025:CDS 50.0%
GTGAGGTCCGTATTTATCGG+AGG - chr4.4:43265242-43265261 None:intergenic 50.0%
TAATGAACCTCGGCAACGCA+AGG - chr4.4:43266473-43266492 None:intergenic 50.0%
TCCATGGGTGCAGTGTATTG+GGG - chr4.4:43266928-43266947 None:intergenic 50.0%
TCTGCATTTGTAGACGGCAC+AGG - chr4.4:43265455-43265474 None:intergenic 50.0%
TGTGGTAGGTTTCTGTGGCA+AGG - chr4.4:43266712-43266731 None:intergenic 50.0%
TTCGATAGACCTTGCGGTCA+CGG + chr4.4:43265391-43265410 MS.gene021025:CDS 50.0%
TTCTGGCAGAAGCCATACCA+CGG - chr4.4:43266687-43266706 None:intergenic 50.0%
TTGGGGTATGTCGGAAACCA+AGG - chr4.4:43266911-43266930 None:intergenic 50.0%
! AACGCTTTGGATGCTGCACA+AGG + chr4.4:43263719-43263738 MS.gene021025:CDS 50.0%
! ACCTGATTTGCACATCGCAG+AGG + chr4.4:43266829-43266848 MS.gene021025:CDS 50.0%
! ACTGGACCGTCGTGATTTTG+GGG + chr4.4:43265003-43265022 MS.gene021025:CDS 50.0%
! TTGCAAGGCGAAGAGTATGC+TGG + chr4.4:43267016-43267035 MS.gene021025:CDS 50.0%
!! ACTTCAGACAAGGCTGGTCT+AGG + chr4.4:43266319-43266338 MS.gene021025:CDS 50.0%
!! CTTCAGACAAGGCTGGTCTA+GGG + chr4.4:43266320-43266339 MS.gene021025:CDS 50.0%
AAACCTATGGTCAGCGGCAG+TGG + chr4.4:43266957-43266976 MS.gene021025:CDS 55.0%
AAGGCCCGTAGGTTTGTCGA+AGG + chr4.4:43265365-43265384 MS.gene021025:CDS 55.0%
ACCCCAATACACTGCACCCA+TGG + chr4.4:43266924-43266943 MS.gene021025:CDS 55.0%
AGCCATACCACGGCAAAGTC+TGG - chr4.4:43266677-43266696 None:intergenic 55.0%
CCAACGACCACACTCAAGCA+AGG - chr4.4:43264460-43264479 None:intergenic 55.0%
CCTTGCTTGAGTGTGGTCGT+TGG + chr4.4:43264457-43264476 MS.gene021025:CDS 55.0%
GAGGTTCGACTGTATCGCAG+AGG + chr4.4:43264806-43264825 MS.gene021025:CDS 55.0%
GGAATGCTGTCATTGGCAGG+TGG + chr4.4:43263740-43263759 MS.gene021025:intron 55.0%
TGATGTCCTCTCGGGCACTT+TGG + chr4.4:43266557-43266576 MS.gene021025:CDS 55.0%
TTGGTCCGAACGGCTGTACA+TGG + chr4.4:43266742-43266761 MS.gene021025:CDS 55.0%
! ACATCGCAGAGGTTGGTTGC+AGG + chr4.4:43266840-43266859 MS.gene021025:CDS 55.0%
! CTGGACCGTCGTGATTTTGG+GGG + chr4.4:43265004-43265023 MS.gene021025:CDS 55.0%
! TGGACCGTCGTGATTTTGGG+GGG + chr4.4:43265005-43265024 MS.gene021025:CDS 55.0%
!! ACAAGGCTGGTCTAGGGTGA+AGG + chr4.4:43266326-43266345 MS.gene021025:CDS 55.0%
ACGACCTCGATCCTGTGCGA+AGG + chr4.4:43265650-43265669 MS.gene021025:CDS 60.0%
CGACCTCGATCCTGTGCGAA+GGG + chr4.4:43265651-43265670 MS.gene021025:CDS 60.0%
CTGTGCGAAGGGACCTGTCT+CGG + chr4.4:43265662-43265681 MS.gene021025:CDS 60.0%
GAAGGGACCTGTCTCGGTTG+AGG + chr4.4:43265668-43265687 MS.gene021025:CDS 60.0%
GATAGACCTTGCGGTCACGG+AGG + chr4.4:43265394-43265413 MS.gene021025:CDS 60.0%
TCTTCTCCTCCGTGACCGCA+AGG - chr4.4:43265403-43265422 None:intergenic 60.0%
CGACCACTGCCGCTGACCAT+AGG - chr4.4:43266963-43266982 None:intergenic 65.0%
CGAGACAGGTCCCTTCGCAC+AGG - chr4.4:43265664-43265683 None:intergenic 65.0%
GGTCCCTTCGCACAGGATCG+AGG - chr4.4:43265657-43265676 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 43263686 43267055 43263686 ID=MS.gene021025
chr4.4 mRNA 43263686 43267055 43263686 ID=MS.gene021025.t1;Parent=MS.gene021025
chr4.4 exon 43263686 43263758 43263686 ID=MS.gene021025.t1.exon1;Parent=MS.gene021025.t1
chr4.4 CDS 43263686 43263758 43263686 ID=cds.MS.gene021025.t1;Parent=MS.gene021025.t1
chr4.4 exon 43264394 43264608 43264394 ID=MS.gene021025.t1.exon2;Parent=MS.gene021025.t1
chr4.4 CDS 43264394 43264608 43264394 ID=cds.MS.gene021025.t1;Parent=MS.gene021025.t1
chr4.4 exon 43264713 43265096 43264713 ID=MS.gene021025.t1.exon3;Parent=MS.gene021025.t1
chr4.4 CDS 43264713 43265096 43264713 ID=cds.MS.gene021025.t1;Parent=MS.gene021025.t1
chr4.4 exon 43265203 43265539 43265203 ID=MS.gene021025.t1.exon4;Parent=MS.gene021025.t1
chr4.4 CDS 43265203 43265539 43265203 ID=cds.MS.gene021025.t1;Parent=MS.gene021025.t1
chr4.4 exon 43265641 43265720 43265641 ID=MS.gene021025.t1.exon5;Parent=MS.gene021025.t1
chr4.4 CDS 43265641 43265720 43265641 ID=cds.MS.gene021025.t1;Parent=MS.gene021025.t1
chr4.4 exon 43266192 43266578 43266192 ID=MS.gene021025.t1.exon6;Parent=MS.gene021025.t1
chr4.4 CDS 43266192 43266578 43266192 ID=cds.MS.gene021025.t1;Parent=MS.gene021025.t1
chr4.4 exon 43266678 43267055 43266678 ID=MS.gene021025.t1.exon7;Parent=MS.gene021025.t1
chr4.4 CDS 43266678 43267055 43266678 ID=cds.MS.gene021025.t1;Parent=MS.gene021025.t1
Gene Sequence

>MS.gene021025

ATGTCTGACTTAGGTGGGTTTGTTTTAACTGGAAACGCTTTGGATGCTGCACAAGGAATGCTGTCATTGGCAGGTGGCATCTTCAACTACTTATTTTTTTTAAGATGCATGTTACCTCTTTACTGTGGTTGTTTATGAGGAAAAAAAATCTATGGTTTTGATATTTAGTTATGTGTGTTCTGTTATCATAGTTGATTGCTTTGTACATGTCATATAACATGCCTTAGCATGTTAACAATATGTTCAATAGCGATCACGTTTTTTTTCCCTGTGTTGCATATCATTATTTTGATTTTTAATGCATGGTATAGATGTCCTAGAACATAGCTTTGCATGTCAACAATAAGTTCAGTAGATGAAATGAACAACATTTCGCATGTTCAGCCAATTTTGTATTCTTAAGATACATGTTTACTCTTTATTATGGTCCTTTAGGACAAAAAATATCTAGGGTTCTGAATTTTTTTGCAGTGTTTAATATCATTATATTTGATTCTTTTTGCATGATGTAACTGTGATATAGCATACCTTAGCAAGTTACCAGTATAGGTTCTATGACAGCGAAATTTTTTCCATGCCTCTGATATCGTTATGTTTGATCATTTATGCATAATATAAAATATAAATGGCACATGACATACCTTTGCATGTTTATAACAAGTTCATTAGCAACCAAATGTTTTTTTCAATCTTTTTACATTAACCCAGCCCATCAGAGTAACAAGAAGCCTTACTTTTTCCCTTTTATGCCTCCTAATATTGTGATCTGCTCCTTGCTTGAGTGTGGTCGTTGGTTTTATCCAAAGCTGATTTGCAGCATGCATGAAAATGTTGTAGGTGGGGGTAACGACTTTCATCCAACGTATACCCCAAGTGAGATGGCAATGATGAGGACATACTTCCTTGAATTTGACACTATGTCTGTAAGTGTTGTTAAATAATTTTGTCTCCGACCATTCTAATAGATGAGGACATACTTCCTGCCAATAAATGTGTTTGATGCTAATGCGCGTGTTAATTTTCGTAGGGAATGGGTCGGATGCCTAACTGCTTTTTGAAAGACTATGGTGGTTATATTGAAGACTACGTTATGTTGCGAGATCCAATGAACAATGAGATTGAGGTTCGACTGTATCGCAGAGGCGACAAGCTTTATATGAGGAAAGGTTGGTATGGACTGAAGGACTTCTACAACATTGAGCTTGGTGCATGGATAGACTTGACATATGAAAGACCAAATCTTATGACCTTGACGATCAACAACAGATTTTTCGAGGAAATTTTGTATCCTGCTCACACTACTCCAATAATATCCAAACTGGACCGTCGTGATTTTGGGGGGAATTTGGATGATTTTTTTGAGACATTCACTATTGAATTGACTTACTCGGATGTTAACTCAGGATGTTTGGTATTCACTGTGGATTGCTTTATATTTCCGTTGTGTTATTGTTTATTTCTTAAATGATATTTCTGTTTGTGTTTAGTAACGGTGTTTATTATTTCATCTGCATTAGACATTGCCGTGGTTTGGGTTCTGTAAGCGCGTGTTACCTCCGATAAATACGGACCTCACTGTCATTGATTACGTTGGATTTGCCTGGAGATGTGACCTAAAGTTCATTCAGCGTGACAAGACTCCTATGTGTACAATTGAAGGTGATTGGGGGACAATATGTAAGGCCCGTAGGTTTGTCGAAGGTCGTTCGATAGACCTTGCGGTCACGGAGGAGAAGAATAATTATGTGCTTTACTTGAAATTTATCCCTGTGCCGTCTACAAATGCAGATTTGATTAGAGGCATTGATCCAAGGTTCATATTGCAGTCTGATGCTTCTATATTCTGTTTCCAAGGTTATGCATTTTGTACCCTGAACTGAAGTATATGTTGTTTATTCTGTCCGGCAATTTGATTGTTATTCGTGCCAATGAATTTATATGGTTTTTTATTACAGACTCTGCTAACGACCTCGATCCTGTGCGAAGGGACCTGTCTCGGTTGAGGACTTATCGTCTCGAGCTAGATAGCGACATTGTGAGATCTCTGTCTTCTTATTAGTGCAATTGTACTAAAAATTTGTGTAATTTATGTGCCTTTTAACCACCAAGTTTTGTTTATGCTGCGTTGTTCTTAAATTTTAAAATTTTCACGACAACAATAAGGATAGTACATTCTAATTTGAATATATGGTTGAAGAGTGTAAGTGGATAAAATGATGCAGACCGGATTTGTAGAGAGTAATAGAAGTTTTTGCATATACGAATCTGAGATTCAGACATAATTGATAATAGTTATCATAAACTCTGTCTAGGATTGCTGATCTCAGACGCCGAAAAAATTTGTACGTTAGTTTTGTGCGGTGGTTATTGTATTCATGTCTGAAATAGAAACCATGGCTGAACTTTATCTGTCAGATATACTTTCTTATGTCCGGCATAAATTTATGTTAACATTTTCTATTATGGTTTCCTATCTAATATCATAAGGTGTGTCCTTATTTAGCAGTTAAAGGCGAGGTTACCTTCATGTTTTGCAAAAGAAGTAGGCGTGCATATTGATGATCATGTTATGCTTCGTGATCCAAACAACAATATCATTGTTGTTGAAGTTCAGAAAAAGAATGGCAAGGTCTACTTCAGACAAGGCTGGTCTAGGGTGAAGGATATTTATAACATTGTAGATGGTGCATGGGTCTATCTGAAATATGCGGGGCCTAATCTACTACTCATGACCATAAGAAACAAGGCTGGATTGGAGATACCATATCCATTATCCGATATATCCCTTGCGTTGCCGAGGTTCATTACTTCATCAGGGGAGAGCCAGTTAGTGCATTTTTTCCGCACATCTGTCAAGATTTTGACTTCGTCTGATGTCCTCTCGGGCACTTTGGTATATAATTTGCACTAATTGGTTAATATAATTAGATATTTGGTTATTTCGTTCATTCGATTATAAGGTTATCTTACTGTTTGTTGGTTGTTTAACCAGACTTTGCCGTGGTATGGCTTCTGCCAGAAATCCTTGCCACAGAAACCTACCACACTTACGATTGTTGGTCCGAACGGCTGTACATGGAGATGTGATCTGACCTTCGCTGTTGCAAATAATATGCCTTATGCTATGATTGGTGGTGATTGGAACCTGATTTGCACATCGCAGAGGTTGGTTGCAGGCCATGCAGTTAAGTTCGCTGTTGTCCATGACAAAGATAACACAGTCCTTGGTTTCCGACATACCCCAATACACTGCACCCATGGATACTATGTGAAACCTATGGTCAGCGGCAGTGGTCGATATGTGTACCAGGTCAATCACTATCTCAAATATTGCAAGGCGAAGAGTATGCTGGAACAGATGTCGGGATGA
Protein sequence

>MS.gene021025.t1

MSDLGGFVLTGNALDAAQGMLSLAAHQSNKKPYFFPFMPPNIVICSLLECGRWFYPKLICSMHENVVGGGNDFHPTYTPSEMAMMRTYFLEFDTMSGMGRMPNCFLKDYGGYIEDYVMLRDPMNNEIEVRLYRRGDKLYMRKGWYGLKDFYNIELGAWIDLTYERPNLMTLTINNRFFEEILYPAHTTPIISKLDRRDFGGNLDDFFETFTIELTYSDVNSGCLTLPWFGFCKRVLPPINTDLTVIDYVGFAWRCDLKFIQRDKTPMCTIEGDWGTICKARRFVEGRSIDLAVTEEKNNYVLYLKFIPVPSTNADLIRGIDPRFILQSDASIFCFQDSANDLDPVRRDLSRLRTYRLELDSDILKARLPSCFAKEVGVHIDDHVMLRDPNNNIIVVEVQKKNGKVYFRQGWSRVKDIYNIVDGAWVYLKYAGPNLLLMTIRNKAGLEIPYPLSDISLALPRFITSSGESQLVHFFRTSVKILTSSDVLSGTLTLPWYGFCQKSLPQKPTTLTIVGPNGCTWRCDLTFAVANNMPYAMIGGDWNLICTSQRLVAGHAVKFAVVHDKDNTVLGFRHTPIHCTHGYYVKPMVSGSGRYVYQVNHYLKYCKAKSMLEQMSG