AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021074

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021074.t1 MTR_3g450850 92.657 286 21 0 1 286 1 286 0.0 547
MS.gene021074.t1 MTR_4g035820 34.366 355 202 9 5 347 30 365 6.31e-51 184
MS.gene021074.t1 MTR_3g012160 81.720 93 17 0 195 287 1 93 7.22e-47 157
MS.gene021074.t1 MTR_6g051425 30.124 322 198 9 34 338 3 314 5.56e-34 130
MS.gene021074.t1 MTR_1g070355 32.231 242 150 6 53 292 80 309 2.61e-29 121
MS.gene021074.t1 MTR_8g442610 96.078 51 2 0 1 51 1 51 4.37e-29 109
MS.gene021074.t1 MTR_5g083630 79.661 59 12 0 196 254 19 77 4.23e-24 97.1
MS.gene021074.t1 MTR_5g076070 25.207 242 161 7 50 286 56 282 4.07e-20 90.9
MS.gene021074.t1 MTR_6g014355 34.641 153 90 4 127 273 11 159 2.36e-14 73.2
MS.gene021074.t1 MTR_6g022080 33.577 137 81 4 59 194 97 224 4.52e-14 72.4
MS.gene021074.t1 MTR_0558s0020 26.493 268 164 10 52 298 41 296 3.23e-13 70.5
MS.gene021074.t1 MTR_1g019850 31.609 174 97 7 17 188 42 195 2.09e-12 67.4
MS.gene021074.t1 MTR_8g446020 27.568 185 122 6 119 298 79 256 1.92e-11 64.7
MS.gene021074.t1 MTR_7g446510 31.138 167 107 5 144 306 167 329 3.73e-11 64.7
MS.gene021074.t1 MTR_7g446480 31.138 167 107 5 144 306 152 314 5.06e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021074.t1 AT1G10240 48.140 430 216 2 42 470 43 466 3.94e-148 439
MS.gene021074.t1 AT1G10240 48.140 430 216 2 42 470 43 466 3.94e-148 439
MS.gene021074.t1 AT5G28530 43.750 464 241 4 17 470 28 481 7.04e-130 392
MS.gene021074.t1 AT5G28530 43.750 464 241 4 17 470 28 481 7.04e-130 392
MS.gene021074.t1 AT5G28530 43.750 464 241 4 17 470 28 481 7.79e-130 392
MS.gene021074.t1 AT5G28530 37.665 454 220 4 17 470 28 418 1.61e-95 301
MS.gene021074.t1 AT5G28530 37.665 454 220 4 17 470 28 418 2.16e-95 301
MS.gene021074.t1 AT4G38180 31.382 427 279 6 48 471 74 489 5.10e-60 210
MS.gene021074.t1 AT4G15090 29.138 429 280 9 50 471 54 465 1.98e-54 195
MS.gene021074.t1 AT4G15090 29.138 429 280 9 50 471 54 465 1.98e-54 195
MS.gene021074.t1 AT4G15090 29.138 429 280 9 50 471 54 465 1.98e-54 195
MS.gene021074.t1 AT4G15090 29.138 429 280 9 50 471 54 465 1.98e-54 195
MS.gene021074.t1 AT4G15090 29.138 429 280 9 50 471 54 465 1.98e-54 195
MS.gene021074.t1 AT1G76320 27.635 427 274 10 53 471 3 402 2.62e-45 168
MS.gene021074.t1 AT1G76320 27.635 427 274 10 53 471 3 402 2.80e-45 169
MS.gene021074.t1 AT1G76320 27.635 427 274 10 53 471 3 402 3.49e-45 168
MS.gene021074.t1 AT1G76320 27.635 427 274 10 53 471 3 402 3.49e-45 168
MS.gene021074.t1 AT3G22170 26.591 440 267 11 50 471 73 474 1.50e-44 167
MS.gene021074.t1 AT3G22170 26.591 440 267 11 50 471 73 474 1.50e-44 167
MS.gene021074.t1 AT3G06250 26.829 410 240 10 48 453 191 544 1.39e-37 146
MS.gene021074.t1 AT3G06250 26.829 410 240 10 48 453 191 544 1.39e-37 146
MS.gene021074.t1 AT3G06250 26.829 410 240 10 48 453 191 544 1.39e-37 146
MS.gene021074.t1 AT2G27110 25.935 401 258 9 50 449 52 414 1.28e-36 144
MS.gene021074.t1 AT2G27110 25.935 401 258 9 50 449 52 414 1.28e-36 144
MS.gene021074.t1 AT5G18960 27.727 440 254 15 33 468 197 576 1.33e-36 144
MS.gene021074.t1 AT5G18960 27.727 440 254 15 33 468 197 576 1.33e-36 144
MS.gene021074.t1 AT1G52520 27.103 428 274 13 50 470 88 484 4.11e-35 139
MS.gene021074.t1 AT4G19990 25.901 444 257 13 49 472 23 414 2.55e-33 134
MS.gene021074.t1 AT4G19990 25.901 444 257 13 49 472 23 414 2.55e-33 134
MS.gene021074.t1 AT4G19990 25.901 444 257 13 49 472 23 414 2.70e-33 134
MS.gene021074.t1 AT4G19990 25.901 444 257 13 49 472 23 414 2.70e-33 134
MS.gene021074.t1 AT4G19990 25.901 444 257 13 49 472 23 414 2.75e-33 134
MS.gene021074.t1 AT4G19990 25.901 444 257 13 49 472 37 428 2.76e-33 134
MS.gene021074.t1 AT2G27110 30.568 229 155 3 222 449 44 269 1.44e-32 131
MS.gene021074.t1 AT2G32250 27.586 232 166 2 242 472 180 410 2.06e-31 128
MS.gene021074.t1 AT2G32250 27.586 232 166 2 242 472 180 410 2.06e-31 128
MS.gene021074.t1 AT2G32250 27.586 232 166 2 242 472 180 410 2.32e-31 128
MS.gene021074.t1 AT2G32250 27.586 232 166 2 242 472 180 410 2.32e-31 128
MS.gene021074.t1 AT2G32250 27.586 232 166 2 242 472 180 410 2.32e-31 128
MS.gene021074.t1 AT2G32250 27.586 232 166 2 242 472 139 369 2.33e-31 128
MS.gene021074.t1 AT2G32250 27.586 232 166 2 242 472 180 410 2.34e-31 128
MS.gene021074.t1 AT2G32250 27.586 232 166 2 242 472 139 369 2.49e-31 128
MS.gene021074.t1 AT1G80010 24.823 423 267 11 50 451 98 490 2.85e-31 128
MS.gene021074.t1 AT4G19990 25.635 394 229 11 98 472 9 357 2.19e-29 122
MS.gene021074.t1 AT4G38170 26.577 222 138 4 263 471 45 254 6.02e-22 99.4

Find 67 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTCGCTTTGTCAATTT+TGG 0.062165 4.3:+40415364 MS.gene021074:CDS
ACAAATTGGAGCATATTATT+TGG 0.124855 4.3:+40414771 MS.gene021074:CDS
ACGACATGCCACTTGGAATA+TGG 0.171984 4.3:+40414873 MS.gene021074:CDS
GAAATCAATCAGACTTGTTT+TGG 0.260432 4.3:-40415481 None:intergenic
AATCGATGAAAATAACAAAT+TGG 0.277704 4.3:+40414757 MS.gene021074:CDS
TTCCTTTACATGGGCTATAA+AGG 0.281917 4.3:+40414964 MS.gene021074:CDS
TAGAACACAACCAAAGAAAA+TGG 0.288289 4.3:-40414921 None:intergenic
AATCATCTTCACATTCTAAA+TGG 0.310029 4.3:-40415275 None:intergenic
GCAATAGCTTCTTTCATTGC+AGG 0.316817 4.3:-40415126 None:intergenic
CAAATTGGAGCATATTATTT+GGG 0.322554 4.3:+40414772 MS.gene021074:CDS
GAGCATATTATTTGGGCATT+TGG 0.323044 4.3:+40414779 MS.gene021074:CDS
ATAATGAAGTGGAAGGTAAA+AGG 0.341694 4.3:+40414330 MS.gene021074:CDS
GCGAATAGAGCAAGACAATA+TGG 0.343765 4.3:-40415350 None:intergenic
CGACATGCCACTTGGAATAT+GGG 0.356248 4.3:+40414874 MS.gene021074:CDS
TCATCATATCTCGACCCTAA+TGG 0.370604 4.3:-40415225 None:intergenic
ATTCGAGCATATGAAGCTTT+CGG 0.374991 4.3:+40414809 MS.gene021074:CDS
TTTGCTGGAATGACTACAAC+TGG 0.388310 4.3:+40415414 MS.gene021074:CDS
ACCAAGTTGGTAACTTTGCC+AGG 0.432753 4.3:-40415194 None:intergenic
TGAGAGGGAATGGAAATTGA+TGG 0.437961 4.3:+40415299 MS.gene021074:CDS
TTGGGCACTAGCTTATTTGA+AGG 0.439783 4.3:+40415383 MS.gene021074:CDS
AGAAGATTTCTTCCTTTACA+TGG 0.445605 4.3:+40414954 MS.gene021074:CDS
CAGTCGGAGGATAATCCATT+AGG 0.449548 4.3:+40414251 MS.gene021074:CDS
GTAACGATTTATTCGATAAG+TGG 0.456829 4.3:-40414852 None:intergenic
AAAGGTCCATGTTGTGGCTC+TGG 0.458551 4.3:-40414080 None:intergenic
AACACCATCATCAATGTGAT+TGG 0.459120 4.3:-40414111 None:intergenic
GGAAGAAATGAGGCCATTGA+TGG 0.463463 4.3:+40414008 MS.gene021074:CDS
TGAGTTATTAGATGATAAAG+AGG 0.481430 4.3:+40414463 MS.gene021074:CDS
TGAGGCCATTGATGGGTCCT+TGG 0.490216 4.3:+40414016 MS.gene021074:CDS
TCCTGGCAAAGTTACCAACT+TGG 0.495704 4.3:+40415193 MS.gene021074:CDS
ATGTGATTGGCTTGAGGCAA+AGG 0.498857 4.3:-40414098 None:intergenic
TGATCTGTAAGAATTGTTTG+TGG 0.499648 4.3:-40415099 None:intergenic
TTCATCATCTTCATGTTCCA+AGG 0.504241 4.3:-40414033 None:intergenic
GATGATGGTGTTCTTTATGA+AGG 0.505535 4.3:+40414122 MS.gene021074:CDS
GCTGGAATACTTCGATAAGC+AGG 0.512358 4.3:-40414497 None:intergenic
TAATTGTGGTGCAAAATTGT+TGG 0.514270 4.3:+40414373 MS.gene021074:CDS
CTTTATCATCTAATAACTCA+TGG 0.514899 4.3:-40414460 None:intergenic
GAGTTTGTTTGTCATCATGC+TGG 0.524093 4.3:+40414287 MS.gene021074:CDS
ATACGACCTTGATCAATAGC+TGG 0.527064 4.3:-40414515 None:intergenic
ATTCAATCTCAAAGTGGTAT+CGG 0.528585 4.3:+40414653 MS.gene021074:CDS
AATCGTTACGACATGCCACT+TGG 0.530194 4.3:+40414866 MS.gene021074:CDS
AGTATTCCAGCTATTGATCA+AGG 0.532680 4.3:+40414509 MS.gene021074:CDS
CAAGCCAATCACATTGATGA+TGG 0.537972 4.3:+40414107 MS.gene021074:CDS
TACCTTTATAGCCCATGTAA+AGG 0.539233 4.3:-40414966 None:intergenic
ATGTTCCAAGGACCCATCAA+TGG 0.541178 4.3:-40414021 None:intergenic
AAGTGGAAGGTAAAAGGAAA+CGG 0.542859 4.3:+40414336 MS.gene021074:CDS
AATTGAGATAGTTATGTCAT+CGG 0.549431 4.3:+40413983 None:intergenic
ATGCCACTTGGAATATGGGT+TGG 0.553304 4.3:+40414878 MS.gene021074:CDS
GGTATTTAACAGTGATGATG+AGG 0.560265 4.3:+40414148 MS.gene021074:CDS
TGAGGCAAAGGTCCATGTTG+TGG 0.560366 4.3:-40414086 None:intergenic
GAAGATTTCTTCCTTTACAT+GGG 0.562746 4.3:+40414955 MS.gene021074:CDS
TGGTGTTCTTTATGAAGGAA+AGG 0.567874 4.3:+40414127 MS.gene021074:CDS
CAAATCTATTAAGAATCAGT+CGG 0.568228 4.3:+40414235 MS.gene021074:CDS
CGCAGACAAAGATAATGAAG+TGG 0.571345 4.3:+40414319 MS.gene021074:CDS
AATGGAAGAGAAAACCAAGT+TGG 0.583280 4.3:-40415207 None:intergenic
ATGTTGTGGCTCTGGTACAG+TGG 0.591155 4.3:-40414072 None:intergenic
GACAAAGATAATGAAGTGGA+AGG 0.597807 4.3:+40414323 MS.gene021074:CDS
GAAGAAATGAGGCCATTGAT+GGG 0.599272 4.3:+40414009 MS.gene021074:CDS
GTCATCGGAGGGAAGAAATG+AGG 0.612844 4.3:+40413998 MS.gene021074:CDS
GAGATAGTTATGTCATCGGA+GGG 0.617582 4.3:+40413987 None:intergenic
TGAGATAGTTATGTCATCGG+AGG 0.623694 4.3:+40413986 None:intergenic
AATGAAAGAAGCTATTGCAA+TGG 0.630294 4.3:+40415131 MS.gene021074:CDS
AATTTCATTCAATCTCAAAG+TGG 0.633071 4.3:+40414647 MS.gene021074:CDS
TCATCAATGTGATTGGCTTG+AGG 0.636529 4.3:-40414104 None:intergenic
ACTGTACCAGAGCCACAACA+TGG 0.647764 4.3:+40414074 MS.gene021074:CDS
ATCTATTAAGAATCAGTCGG+AGG 0.648389 4.3:+40414238 MS.gene021074:CDS
AAGTCGTCAAGATGTAATTG+TGG 0.651128 4.3:+40414359 MS.gene021074:CDS
ACTCCAACCCATATTCCAAG+TGG 0.689531 4.3:-40414881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATATATAAAAAGATTCTT+GGG + chr4.3:40415456-40415475 MS.gene021074:CDS 15.0%
!! TTCATATATAAAAAGATTCT+TGG + chr4.3:40415455-40415474 MS.gene021074:CDS 15.0%
!! AATCGATGAAAATAACAAAT+TGG + chr4.3:40414757-40414776 MS.gene021074:CDS 20.0%
!! GGTACATTTATATTTATTTG+AGG + chr4.3:40414985-40415004 MS.gene021074:intron 20.0%
!! TAATTAATATATTGTTGTGC+AGG + chr4.3:40415584-40415603 MS.gene021074:intron 20.0%
! AATCATCTTCACATTCTAAA+TGG - chr4.3:40415278-40415297 None:intergenic 25.0%
! AATTTCATTCAATCTCAAAG+TGG + chr4.3:40414647-40414666 MS.gene021074:CDS 25.0%
! ACAAATTGGAGCATATTATT+TGG + chr4.3:40414771-40414790 MS.gene021074:CDS 25.0%
! CAAATCTATTAAGAATCAGT+CGG + chr4.3:40414235-40414254 MS.gene021074:CDS 25.0%
! CAAATTGGAGCATATTATTT+GGG + chr4.3:40414772-40414791 MS.gene021074:CDS 25.0%
! CTAATGTCTTTATCCAAAAA+TGG - chr4.3:40414626-40414645 None:intergenic 25.0%
! CTTTATCATCTAATAACTCA+TGG - chr4.3:40414463-40414482 None:intergenic 25.0%
! TGAGTTATTAGATGATAAAG+AGG + chr4.3:40414463-40414482 MS.gene021074:CDS 25.0%
! TTAGAGAAAAAAATAGATGC+TGG + chr4.3:40414593-40414612 MS.gene021074:CDS 25.0%
!! AATTAACTCTGAGAAAAAGT+GGG + chr4.3:40414409-40414428 MS.gene021074:CDS 25.0%
!! CAAAACATGCATTTTGTATA+TGG + chr4.3:40415166-40415185 MS.gene021074:CDS 25.0%
!! TCTCTTTTATAAACACCTAA+TGG - chr4.3:40414269-40414288 None:intergenic 25.0%
!!! ACTTTTCTTAGTTTTGTCAA+AGG + chr4.3:40415069-40415088 MS.gene021074:CDS 25.0%
AATATATTGTTGTGCAGGTT+GGG + chr4.3:40415589-40415608 MS.gene021074:intron 30.0%
AATGAAAGAAGCTATTGCAA+TGG + chr4.3:40415131-40415150 MS.gene021074:CDS 30.0%
AGAAGATTTCTTCCTTTACA+TGG + chr4.3:40414954-40414973 MS.gene021074:CDS 30.0%
ATAATGAAGTGGAAGGTAAA+AGG + chr4.3:40414330-40414349 MS.gene021074:CDS 30.0%
ATTCAATCTCAAAGTGGTAT+CGG + chr4.3:40414653-40414672 MS.gene021074:CDS 30.0%
GAAGATTTCTTCCTTTACAT+GGG + chr4.3:40414955-40414974 MS.gene021074:CDS 30.0%
GTAACGATTTATTCGATAAG+TGG - chr4.3:40414855-40414874 None:intergenic 30.0%
TAATATATTGTTGTGCAGGT+TGG + chr4.3:40415588-40415607 MS.gene021074:intron 30.0%
TAATTGTGGTGCAAAATTGT+TGG + chr4.3:40414373-40414392 MS.gene021074:CDS 30.0%
TAGAACACAACCAAAGAAAA+TGG - chr4.3:40414924-40414943 None:intergenic 30.0%
TGATCTGTAAGAATTGTTTG+TGG - chr4.3:40415102-40415121 None:intergenic 30.0%
! AATGTGAAGATGATTTTGAG+AGG + chr4.3:40415283-40415302 MS.gene021074:CDS 30.0%
! ATTTTGTATATGGCATATCC+TGG + chr4.3:40415176-40415195 MS.gene021074:CDS 30.0%
! CAAAATGCATGTTTTGTGTT+TGG - chr4.3:40415162-40415181 None:intergenic 30.0%
! CAATTAACTCTGAGAAAAAG+TGG + chr4.3:40414408-40414427 MS.gene021074:CDS 30.0%
! CATGTCAATTCCATTTTCTT+TGG + chr4.3:40414911-40414930 MS.gene021074:CDS 30.0%
! CTATTCGCTTTGTCAATTTT+GGG + chr4.3:40415365-40415384 MS.gene021074:CDS 30.0%
! TCTATTCGCTTTGTCAATTT+TGG + chr4.3:40415364-40415383 MS.gene021074:CDS 30.0%
!! ATGTGAAGATGATTTTGAGA+GGG + chr4.3:40415284-40415303 MS.gene021074:CDS 30.0%
!! ATTCTTTTGTTGTCAAAAGC+TGG + chr4.3:40414536-40414555 MS.gene021074:CDS 30.0%
!! GAAATCAATCAGACTTGTTT+TGG - chr4.3:40415484-40415503 None:intergenic 30.0%
AACACCATCATCAATGTGAT+TGG - chr4.3:40414114-40414133 None:intergenic 35.0%
AAGTCGTCAAGATGTAATTG+TGG + chr4.3:40414359-40414378 MS.gene021074:CDS 35.0%
AAGTGGAAGGTAAAAGGAAA+CGG + chr4.3:40414336-40414355 MS.gene021074:CDS 35.0%
AATGGAAGAGAAAACCAAGT+TGG - chr4.3:40415210-40415229 None:intergenic 35.0%
AGTATTCCAGCTATTGATCA+AGG + chr4.3:40414509-40414528 MS.gene021074:CDS 35.0%
ATATATTGTTGTGCAGGTTG+GGG + chr4.3:40415590-40415609 MS.gene021074:intron 35.0%
ATCTATTAAGAATCAGTCGG+AGG + chr4.3:40414238-40414257 MS.gene021074:CDS 35.0%
ATTCGAGCATATGAAGCTTT+CGG + chr4.3:40414809-40414828 MS.gene021074:CDS 35.0%
GACAAAGATAATGAAGTGGA+AGG + chr4.3:40414323-40414342 MS.gene021074:CDS 35.0%
GAGCATATTATTTGGGCATT+TGG + chr4.3:40414779-40414798 MS.gene021074:CDS 35.0%
TACCTTTATAGCCCATGTAA+AGG - chr4.3:40414969-40414988 None:intergenic 35.0%
TGGTGTTCTTTATGAAGGAA+AGG + chr4.3:40414127-40414146 MS.gene021074:CDS 35.0%
TGTTTGTTTGCGCGAAAAAA+TGG + chr4.3:40414185-40414204 MS.gene021074:CDS 35.0%
TTCATCATCTTCATGTTCCA+AGG - chr4.3:40414036-40414055 None:intergenic 35.0%
! GATGATGGTGTTCTTTATGA+AGG + chr4.3:40414122-40414141 MS.gene021074:CDS 35.0%
! GGTATTTAACAGTGATGATG+AGG + chr4.3:40414148-40414167 MS.gene021074:CDS 35.0%
! TGCTGGAAATCTTCCATTTT+TGG + chr4.3:40414610-40414629 MS.gene021074:CDS 35.0%
! TTCCTTTACATGGGCTATAA+AGG + chr4.3:40414964-40414983 MS.gene021074:CDS 35.0%
!! AAGATGATTTTGAGAGGGAA+TGG + chr4.3:40415289-40415308 MS.gene021074:CDS 35.0%
!! ACTTGGTTTTCTCTTCCATT+AGG + chr4.3:40415210-40415229 MS.gene021074:CDS 35.0%
!! CTTGGTTTTCTCTTCCATTA+GGG + chr4.3:40415211-40415230 MS.gene021074:CDS 35.0%
!! TGAAGAGTTTTGTCTTAGCA+AGG + chr4.3:40415323-40415342 MS.gene021074:CDS 35.0%
!!! TTGAAGGACTTCTTTTTTGC+TGG + chr4.3:40415399-40415418 MS.gene021074:CDS 35.0%
ATACGACCTTGATCAATAGC+TGG - chr4.3:40414518-40414537 None:intergenic 40.0%
CAAGCCAATCACATTGATGA+TGG + chr4.3:40414107-40414126 MS.gene021074:CDS 40.0%
CGCAGACAAAGATAATGAAG+TGG + chr4.3:40414319-40414338 MS.gene021074:CDS 40.0%
GAAGAAATGAGGCCATTGAT+GGG + chr4.3:40414009-40414028 MS.gene021074:CDS 40.0%
GCAATAGCTTCTTTCATTGC+AGG - chr4.3:40415129-40415148 None:intergenic 40.0%
GCGAATAGAGCAAGACAATA+TGG - chr4.3:40415353-40415372 None:intergenic 40.0%
TCATCATATCTCGACCCTAA+TGG - chr4.3:40415228-40415247 None:intergenic 40.0%
TGAGAGGGAATGGAAATTGA+TGG + chr4.3:40415299-40415318 MS.gene021074:CDS 40.0%
TTTGCTGGAATGACTACAAC+TGG + chr4.3:40415414-40415433 MS.gene021074:CDS 40.0%
! GAGTTTGTTTGTCATCATGC+TGG + chr4.3:40414287-40414306 MS.gene021074:CDS 40.0%
! TAACTCTGAGAAAAAGTGGG+TGG + chr4.3:40414412-40414431 MS.gene021074:CDS 40.0%
! TTGGGCACTAGCTTATTTGA+AGG + chr4.3:40415383-40415402 MS.gene021074:CDS 40.0%
!! TCATCAATGTGATTGGCTTG+AGG - chr4.3:40414107-40414126 None:intergenic 40.0%
AATCGTTACGACATGCCACT+TGG + chr4.3:40414866-40414885 MS.gene021074:CDS 45.0%
ACTCCAACCCATATTCCAAG+TGG - chr4.3:40414884-40414903 None:intergenic 45.0%
ATGTTCCAAGGACCCATCAA+TGG - chr4.3:40414024-40414043 None:intergenic 45.0%
CAGTCGGAGGATAATCCATT+AGG + chr4.3:40414251-40414270 MS.gene021074:CDS 45.0%
GCTGGAATACTTCGATAAGC+AGG - chr4.3:40414500-40414519 None:intergenic 45.0%
GGAAGAAATGAGGCCATTGA+TGG + chr4.3:40414008-40414027 MS.gene021074:CDS 45.0%
TCCTGGCAAAGTTACCAACT+TGG + chr4.3:40415193-40415212 MS.gene021074:CDS 45.0%
! ACGACATGCCACTTGGAATA+TGG + chr4.3:40414873-40414892 MS.gene021074:CDS 45.0%
! ATGCCACTTGGAATATGGGT+TGG + chr4.3:40414878-40414897 MS.gene021074:CDS 45.0%
! CGACATGCCACTTGGAATAT+GGG + chr4.3:40414874-40414893 MS.gene021074:CDS 45.0%
!! ACCAAGTTGGTAACTTTGCC+AGG - chr4.3:40415197-40415216 None:intergenic 45.0%
!! ATGTGATTGGCTTGAGGCAA+AGG - chr4.3:40414101-40414120 None:intergenic 45.0%
AAAGGTCCATGTTGTGGCTC+TGG - chr4.3:40414083-40414102 None:intergenic 50.0%
ACTGTACCAGAGCCACAACA+TGG + chr4.3:40414074-40414093 MS.gene021074:CDS 50.0%
GTCATCGGAGGGAAGAAATG+AGG + chr4.3:40413998-40414017 MS.gene021074:CDS 50.0%
TGAGGCAAAGGTCCATGTTG+TGG - chr4.3:40414089-40414108 None:intergenic 50.0%
!! ATGTTGTGGCTCTGGTACAG+TGG - chr4.3:40414075-40414094 None:intergenic 50.0%
! TGAGGCCATTGATGGGTCCT+TGG + chr4.3:40414016-40414035 MS.gene021074:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 40413996 40415622 40413996 ID=MS.gene021074
chr4.3 mRNA 40413996 40415622 40413996 ID=MS.gene021074.t1;Parent=MS.gene021074
chr4.3 exon 40413996 40414985 40413996 ID=MS.gene021074.t1.exon1;Parent=MS.gene021074.t1
chr4.3 CDS 40413996 40414985 40413996 ID=cds.MS.gene021074.t1;Parent=MS.gene021074.t1
chr4.3 exon 40415069 40415489 40415069 ID=MS.gene021074.t1.exon2;Parent=MS.gene021074.t1
chr4.3 CDS 40415069 40415489 40415069 ID=cds.MS.gene021074.t1;Parent=MS.gene021074.t1
chr4.3 exon 40415606 40415622 40415606 ID=MS.gene021074.t1.exon3;Parent=MS.gene021074.t1
chr4.3 CDS 40415606 40415622 40415606 ID=cds.MS.gene021074.t1;Parent=MS.gene021074.t1
Gene Sequence

>MS.gene021074

ATGTCATCGGAGGGAAGAAATGAGGCCATTGATGGGTCCTTGGAACATGAAGATGATGAAATAATAGATTCTCTGACCACTGTACCAGAGCCACAACATGGACCTTTGCCTCAAGCCAATCACATTGATGATGGTGTTCTTTATGAAGGAAAGGTATTTAACAGTGATGATGAGGCTTACAACTTTTACTGTTTGTTTGCGCGAAAAAATGGTTTTTCAATTAGACGTCATCATGTTTACAAATCTATTAAGAATCAGTCGGAGGATAATCCATTAGGTGTTTATAAAAGAGAGTTTGTTTGTCATCATGCTGGTACGATTAACGCAGACAAAGATAATGAAGTGGAAGGTAAAAGGAAACGGAAGTCGTCAAGATGTAATTGTGGTGCAAAATTGTTGGTGAATATAACAACAATTAACTCTGAGAAAAAGTGGGTGGTGAAGTATTTTAATAATAATCATAACCATGAGTTATTAGATGATAAAGAGGTTAAATTTCTTCCTGCTTATCGAAGTATTCCAGCTATTGATCAAGGTCGTATTCTTTTGTTGTCAAAAGCTGGTTGTTCTGTTAGTTTGATAATTAGAGTGCTTGAGTTAGAGAAAAAAATAGATGCTGGAAATCTTCCATTTTTGGATAAAGACATTAGAAATTTCATTCAATCTCAAAGTGGTATCGGTAAAGAATTTGATGCTTCAAATGTTCTCAAATTATGTAAAAGTCTTAAAGATGCAGATAATGTATTTGAGTATGAATTTTCAATCGATGAAAATAACAAATTGGAGCATATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAAGCTTTCGGAGATGTGATTGTTTTTGATACCACTTATCGAATAAATCGTTACGACATGCCACTTGGAATATGGGTTGGAGTCGATAATCATGTCAATTCCATTTTCTTTGGTTGTGTTCTATTGCAAAATGAGAAGATTTCTTCCTTTACATGGGCTATAAAGGTACATTTATATTTATTTGAGGTTATCATTTCTCAATAAATTTGAGTTTTTAGTAAGTTATTTTACATTTTTTGTATTTTCAGACTTTTCTTAGTTTTGTCAAAGGAAAATATCCACAAACAATTCTTACAGATCAAGATCCTGCAATGAAAGAAGCTATTGCAATGGAATTACCAAACACAAAACATGCATTTTGTATATGGCATATCCTGGCAAAGTTACCAACTTGGTTTTCTCTTCCATTAGGGTCGAGATATGATGATTTTAAAGATGAGTTTTATCGATTATACCATTTAGAATGTGAAGATGATTTTGAGAGGGAATGGAAATTGATGGTTGAAGAGTTTTGTCTTAGCAAGGATAACCATATTGTCTTGCTCTATTCGCTTTGTCAATTTTGGGCACTAGCTTATTTGAAGGACTTCTTTTTTGCTGGAATGACTACAACTGGACGTTCAGAATCTATAAATTCATATATAAAAAGATTCTTGGGAGCCAAAACAAGTCTGATTGATTTCATAAATCAAGTAAGAATTTAATTGAGTTAATTGATTTTTCTCTAGTAAGATGCATAGAATTATTAGTTTTAATTTACTAATAATTAATATATTGTTGTGCAGGTTGGGGTTGTTGTTAA
Protein sequence

>MS.gene021074.t1

MSSEGRNEAIDGSLEHEDDEIIDSLTTVPEPQHGPLPQANHIDDGVLYEGKVFNSDDEAYNFYCLFARKNGFSIRRHHVYKSIKNQSEDNPLGVYKREFVCHHAGTINADKDNEVEGKRKRKSSRCNCGAKLLVNITTINSEKKWVVKYFNNNHNHELLDDKEVKFLPAYRSIPAIDQGRILLLSKAGCSVSLIIRVLELEKKIDAGNLPFLDKDIRNFIQSQSGIGKEFDASNVLKLCKSLKDADNVFEYEFSIDENNKLEHIIWAFGDSIRAYEAFGDVIVFDTTYRINRYDMPLGIWVGVDNHVNSIFFGCVLLQNEKISSFTWAIKTFLSFVKGKYPQTILTDQDPAMKEAIAMELPNTKHAFCIWHILAKLPTWFSLPLGSRYDDFKDEFYRLYHLECEDDFEREWKLMVEEFCLSKDNHIVLLYSLCQFWALAYLKDFFFAGMTTTGRSESINSYIKRFLGAKTSWGCC