Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021108.t1 | KEH30134.1 | 92.6 | 258 | 14 | 3 | 1 | 254 | 1 | 257 | 1.40E-124 | 455.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021108.t1 | Q6X7K1 | 38.5 | 257 | 121 | 7 | 17 | 250 | 6 | 248 | 1.1e-32 | 141.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021108.t1 | A0A072UK53 | 92.6 | 258 | 14 | 3 | 1 | 254 | 1 | 257 | 1.0e-124 | 455.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene021108.t1 | TF | HB-WOX |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021108.t1 | MTR_4g063735 | 95.349 | 258 | 7 | 3 | 1 | 254 | 1 | 257 | 0.0 | 500 |
MS.gene021108.t1 | MTR_8g107210 | 56.383 | 94 | 35 | 2 | 12 | 99 | 80 | 173 | 7.75e-28 | 109 |
MS.gene021108.t1 | MTR_4g084550 | 57.317 | 82 | 35 | 0 | 6 | 87 | 45 | 126 | 2.88e-27 | 103 |
MS.gene021108.t1 | MTR_1g019130 | 62.500 | 72 | 27 | 0 | 20 | 91 | 85 | 156 | 6.33e-27 | 104 |
MS.gene021108.t1 | MTR_1g019130 | 35.754 | 179 | 85 | 4 | 20 | 196 | 85 | 235 | 1.23e-26 | 103 |
MS.gene021108.t1 | MTR_7g060630 | 66.667 | 66 | 22 | 0 | 23 | 88 | 6 | 71 | 6.74e-26 | 100 |
MS.gene021108.t1 | MTR_5g021930 | 68.182 | 66 | 20 | 1 | 22 | 86 | 27 | 92 | 6.46e-25 | 100 |
MS.gene021108.t1 | MTR_5g081990 | 51.899 | 79 | 37 | 1 | 13 | 90 | 20 | 98 | 3.81e-24 | 95.9 |
MS.gene021108.t1 | MTR_8g095580 | 65.455 | 55 | 19 | 0 | 34 | 88 | 91 | 145 | 3.53e-20 | 84.7 |
MS.gene021108.t1 | MTR_3g088485 | 63.636 | 55 | 20 | 0 | 34 | 88 | 89 | 143 | 7.07e-20 | 84.0 |
MS.gene021108.t1 | MTR_2g015000 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 4.26e-14 | 71.6 |
MS.gene021108.t1 | MTR_7g025010 | 45.161 | 62 | 34 | 0 | 25 | 86 | 47 | 108 | 2.30e-13 | 69.7 |
MS.gene021108.t1 | MTR_1g115315 | 46.154 | 65 | 35 | 0 | 20 | 84 | 80 | 144 | 6.13e-13 | 67.0 |
MS.gene021108.t1 | MTR_1g115315 | 44.776 | 67 | 37 | 0 | 20 | 86 | 80 | 146 | 7.51e-13 | 67.0 |
MS.gene021108.t1 | MTR_4g088070 | 44.262 | 61 | 34 | 0 | 25 | 85 | 29 | 89 | 3.56e-12 | 65.9 |
MS.gene021108.t1 | MTR_3g115620 | 40.909 | 66 | 39 | 0 | 20 | 85 | 77 | 142 | 1.08e-11 | 62.8 |
MS.gene021108.t1 | MTR_7g023810 | 45.161 | 62 | 34 | 0 | 25 | 86 | 68 | 129 | 3.53e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021108.t1 | AT5G59340 | 40.856 | 257 | 115 | 8 | 17 | 250 | 6 | 248 | 2.30e-53 | 173 |
MS.gene021108.t1 | AT3G18010 | 45.312 | 128 | 57 | 2 | 20 | 134 | 71 | 198 | 5.71e-29 | 112 |
MS.gene021108.t1 | AT1G46480 | 36.994 | 173 | 98 | 3 | 24 | 196 | 89 | 250 | 1.57e-26 | 103 |
MS.gene021108.t1 | AT1G46480 | 65.672 | 67 | 23 | 0 | 24 | 90 | 89 | 155 | 3.49e-26 | 101 |
MS.gene021108.t1 | AT2G28610 | 62.687 | 67 | 25 | 0 | 22 | 88 | 5 | 71 | 7.43e-25 | 99.4 |
MS.gene021108.t1 | AT3G11260 | 50.000 | 80 | 40 | 0 | 13 | 92 | 12 | 91 | 8.15e-25 | 97.4 |
MS.gene021108.t1 | AT5G05770 | 54.054 | 74 | 34 | 0 | 21 | 94 | 25 | 98 | 1.00e-24 | 95.5 |
MS.gene021108.t1 | AT2G17950 | 63.636 | 66 | 23 | 1 | 22 | 86 | 35 | 100 | 2.24e-23 | 96.3 |
MS.gene021108.t1 | AT2G01500 | 64.407 | 59 | 21 | 0 | 21 | 79 | 57 | 115 | 5.53e-22 | 92.4 |
MS.gene021108.t1 | AT5G45980 | 51.613 | 62 | 30 | 0 | 25 | 86 | 55 | 116 | 7.88e-15 | 73.2 |
MS.gene021108.t1 | AT1G20700 | 40.506 | 79 | 47 | 0 | 13 | 91 | 21 | 99 | 8.10e-15 | 70.1 |
MS.gene021108.t1 | AT1G20700 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 1.85e-14 | 70.5 |
MS.gene021108.t1 | AT1G20700 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 1.92e-14 | 70.5 |
MS.gene021108.t1 | AT2G33880 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 9.26e-14 | 70.5 |
MS.gene021108.t1 | AT2G33880 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 9.41e-14 | 70.5 |
MS.gene021108.t1 | AT4G35550 | 40.278 | 72 | 43 | 0 | 14 | 85 | 88 | 159 | 3.00e-13 | 68.2 |
MS.gene021108.t1 | AT1G20710 | 50.000 | 54 | 27 | 0 | 32 | 85 | 86 | 139 | 2.04e-11 | 62.0 |
Find 46 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAATAGGTGAAGGATAAA+TGG | 0.223363 | 4.3:+40021726 | None:intergenic |
AATCAAGATCATGGTTATAA+TGG | 0.248654 | 4.3:-40020480 | MS.gene021108:CDS |
CTGTAACCAAAGTTATAGTT+AGG | 0.305798 | 4.3:+40020648 | None:intergenic |
TTCTGCAGGACAAGGTTCTT+AGG | 0.334683 | 4.3:-40020427 | None:intergenic |
AGTTCCACTGATACACATTC+TGG | 0.341293 | 4.3:-40020525 | MS.gene021108:CDS |
AACATACCATTTGGACAAAT+AGG | 0.347632 | 4.3:+40021712 | None:intergenic |
ACTGCATCCAACTGGCATAT+TGG | 0.347683 | 4.3:-40020598 | MS.gene021108:CDS |
ACTGCAGGTAGAAGCACTTT+TGG | 0.360138 | 4.3:+40020771 | None:intergenic |
TAGCTTATTTCATGACTTTG+TGG | 0.366655 | 4.3:+40020807 | None:intergenic |
CCTTCACCTATTTGTCCAAA+TGG | 0.376093 | 4.3:-40021718 | MS.gene021108:intron |
ATCAAGATCATGGTTATAAT+GGG | 0.392817 | 4.3:-40020479 | MS.gene021108:CDS |
ATTAATGAGGAGGGTTCAAA+TGG | 0.414428 | 4.3:-40022006 | MS.gene021108:CDS |
TGTGGTTGTGGTACGCAATA+TGG | 0.424892 | 4.3:+40020825 | None:intergenic |
ATTTCATGACTTTGTGGTTG+TGG | 0.425330 | 4.3:+40020813 | None:intergenic |
CAAATAGGTGAAGGATAAAT+GGG | 0.425469 | 4.3:+40021727 | None:intergenic |
TCTTGTATTTCTTCAGCACT+TGG | 0.437582 | 4.3:+40021892 | None:intergenic |
TTGTTTCCACTGCATCCAAC+TGG | 0.438638 | 4.3:-40020606 | MS.gene021108:CDS |
AGAATCCCTAACTATAACTT+TGG | 0.443156 | 4.3:-40020654 | MS.gene021108:CDS |
TTCCCTTCCAATATGCCAGT+TGG | 0.473137 | 4.3:+40020591 | None:intergenic |
GCTGAGAAAGTTATGTCAAA+TGG | 0.482284 | 4.3:-40020729 | MS.gene021108:CDS |
ACTGCTAGGCTTAGAGTGTA+TGG | 0.483688 | 4.3:-40021865 | MS.gene021108:CDS |
TGTAACCAAAGTTATAGTTA+GGG | 0.484125 | 4.3:+40020649 | None:intergenic |
TTGGAGAATTTGTATAAGCA+AGG | 0.498360 | 4.3:-40021925 | MS.gene021108:CDS |
CATGATATCAATCAAGATCA+TGG | 0.502262 | 4.3:-40020489 | MS.gene021108:CDS |
AAAAGAACAAATAAGTATGT+TGG | 0.504717 | 4.3:-40021944 | MS.gene021108:CDS |
CATCCAACTGGCATATTGGA+AGG | 0.509666 | 4.3:-40020594 | MS.gene021108:CDS |
TTACAGTAATCAAGAAACAT+TGG | 0.520782 | 4.3:-40020631 | MS.gene021108:CDS |
GGTGAAGGATAAATGGGTTG+AGG | 0.539516 | 4.3:+40021733 | None:intergenic |
TTTAATAATTCTGCAGGACA+AGG | 0.556573 | 4.3:-40020435 | MS.gene021108:CDS |
TTCCTTCTAAAACCTACTGC+AGG | 0.572590 | 4.3:+40020756 | None:intergenic |
AATAATGAGATTAATGAGGA+GGG | 0.573895 | 4.3:-40022015 | MS.gene021108:CDS |
AGAAGAAGAAGAATAATGGA+GGG | 0.580379 | 4.3:-40022045 | None:intergenic |
CTGAAACAATAGAAGACACC+TGG | 0.584011 | 4.3:+40020559 | None:intergenic |
TAATAATGAGATTAATGAGG+AGG | 0.585231 | 4.3:-40022016 | MS.gene021108:CDS |
AAAGTGCTTCTACCTGCAGT+AGG | 0.586289 | 4.3:-40020768 | MS.gene021108:CDS |
AATATGCCAGTTGGATGCAG+TGG | 0.586423 | 4.3:+40020600 | None:intergenic |
TTAATGAGGAGGGTTCAAAT+GGG | 0.588886 | 4.3:-40022005 | MS.gene021108:CDS |
AGAACCAGAATGTGTATCAG+TGG | 0.599607 | 4.3:+40020521 | None:intergenic |
AGAGTGTATGGTCACATCGA+AGG | 0.601558 | 4.3:-40021853 | MS.gene021108:CDS |
AAATATCTGCAATAGTCCAA+TGG | 0.604277 | 4.3:-40020700 | MS.gene021108:CDS |
CCATTTGGACAAATAGGTGA+AGG | 0.604508 | 4.3:+40021718 | None:intergenic |
AAATACAAGAAATCACTGCT+AGG | 0.611419 | 4.3:-40021879 | MS.gene021108:CDS |
GAATAATAATGAGATTAATG+AGG | 0.611694 | 4.3:-40022019 | MS.gene021108:CDS |
ATCCAACTGGCATATTGGAA+GGG | 0.612491 | 4.3:-40020593 | MS.gene021108:CDS |
GGAAGGGAAAACAACTGACC+AGG | 0.627194 | 4.3:-40020577 | MS.gene021108:CDS |
GTATTTCATCAAGTTCACGA+TGG | 0.702362 | 4.3:-40021975 | MS.gene021108:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAACTAATAGTTAAAAACA+AGG | + | chr4.3:40021128-40021147 | None:intergenic | 15.0% |
!! | ATTATTAAAAAAGTCAAAGA+AGG | + | chr4.3:40022012-40022031 | None:intergenic | 15.0% |
!! | TTATTAAAAAAGTCAAAGAA+GGG | + | chr4.3:40022011-40022030 | None:intergenic | 15.0% |
!!! | AACTAAAAAAGCATTAAAAA+AGG | - | chr4.3:40021437-40021456 | MS.gene021108:intron | 15.0% |
!!! | GGTAATTGAATTATTATTTT+TGG | - | chr4.3:40021592-40021611 | MS.gene021108:intron | 15.0% |
!!! | TTGTTCTTATTATATTTTCA+TGG | - | chr4.3:40020843-40020862 | MS.gene021108:intron | 15.0% |
!! | AAAAGAACAAATAAGTATGT+TGG | - | chr4.3:40020514-40020533 | MS.gene021108:CDS | 20.0% |
!! | ACCAAAAATAAAATACTAGA+AGG | + | chr4.3:40021317-40021336 | None:intergenic | 20.0% |
!! | ATCTATATTGTGGTAAAATA+TGG | - | chr4.3:40021072-40021091 | MS.gene021108:intron | 20.0% |
!! | CAAAAACATTGATATGAAAA+TGG | + | chr4.3:40020826-40020845 | None:intergenic | 20.0% |
!! | GAATAATAATGAGATTAATG+AGG | - | chr4.3:40020439-40020458 | MS.gene021108:CDS | 20.0% |
!! | TCTATATTGTGGTAAAATAT+GGG | - | chr4.3:40021073-40021092 | MS.gene021108:intron | 20.0% |
!! | TGAAAATGAGATTTATTGAA+AGG | + | chr4.3:40021225-40021244 | None:intergenic | 20.0% |
!!! | ATACTTATTTGTTCTTTTGT+TGG | + | chr4.3:40020512-40020531 | None:intergenic | 20.0% |
!!! | ATGTTTTCATTATATACCAT+TGG | + | chr4.3:40021777-40021796 | None:intergenic | 20.0% |
!!! | TACTTATTTGTTCTTTTGTT+GGG | + | chr4.3:40020511-40020530 | None:intergenic | 20.0% |
!!! | TTCAATAAATCTCATTTTCA+TGG | - | chr4.3:40021225-40021244 | MS.gene021108:intron | 20.0% |
! | AAGGTTAATTTCTCCTAAAA+CGG | + | chr4.3:40021206-40021225 | None:intergenic | 25.0% |
! | AATAATGAGATTAATGAGGA+GGG | - | chr4.3:40020443-40020462 | MS.gene021108:CDS | 25.0% |
! | AATCAAGATCATGGTTATAA+TGG | - | chr4.3:40021978-40021997 | MS.gene021108:CDS | 25.0% |
! | ATCAAGATCATGGTTATAAT+GGG | - | chr4.3:40021979-40021998 | MS.gene021108:CDS | 25.0% |
! | CAAATAAATTACTCCATCTT+TGG | + | chr4.3:40021486-40021505 | None:intergenic | 25.0% |
! | TAAAACGGGATTTATATAGA+GGG | + | chr4.3:40021191-40021210 | None:intergenic | 25.0% |
! | TAATAATGAGATTAATGAGG+AGG | - | chr4.3:40020442-40020461 | MS.gene021108:CDS | 25.0% |
! | TATAACCTAGAACTAGAAAA+AGG | + | chr4.3:40020783-40020802 | None:intergenic | 25.0% |
! | TATCTTTGTACGACATAAAA+TGG | - | chr4.3:40020968-40020987 | MS.gene021108:intron | 25.0% |
! | TGTAACCAAAGTTATAGTTA+GGG | + | chr4.3:40021812-40021831 | None:intergenic | 25.0% |
! | TTACAGTAATCAAGAAACAT+TGG | - | chr4.3:40021827-40021846 | MS.gene021108:CDS | 25.0% |
!!! | GACTTTTTTAATAATTCTGC+AGG | - | chr4.3:40022017-40022036 | MS.gene021108:CDS | 25.0% |
!!! | GCCTTCTAGTATTTTATTTT+TGG | - | chr4.3:40021313-40021332 | MS.gene021108:intron | 25.0% |
!!! | TTGTTGTTGTATCTTTTTCA+TGG | - | chr4.3:40021038-40021057 | MS.gene021108:intron | 25.0% |
AAATACAAGAAATCACTGCT+AGG | - | chr4.3:40020579-40020598 | MS.gene021108:CDS | 30.0% | |
AAATATCTGCAATAGTCCAA+TGG | - | chr4.3:40021758-40021777 | MS.gene021108:CDS | 30.0% | |
AACAGAAACATAACCAAAGA+TGG | - | chr4.3:40021470-40021489 | MS.gene021108:intron | 30.0% | |
AACATACCATTTGGACAAAT+AGG | + | chr4.3:40020749-40020768 | None:intergenic | 30.0% | |
ACAAATAGGTGAAGGATAAA+TGG | + | chr4.3:40020735-40020754 | None:intergenic | 30.0% | |
AGAATCCCTAACTATAACTT+TGG | - | chr4.3:40021804-40021823 | MS.gene021108:CDS | 30.0% | |
AGGTTAATTTCTCCTAAAAC+GGG | + | chr4.3:40021205-40021224 | None:intergenic | 30.0% | |
CAAATAGGTGAAGGATAAAT+GGG | + | chr4.3:40020734-40020753 | None:intergenic | 30.0% | |
CATGATATCAATCAAGATCA+TGG | - | chr4.3:40021969-40021988 | MS.gene021108:CDS | 30.0% | |
CCATATTTAAATTGTGCTAG+CGG | - | chr4.3:40020909-40020928 | MS.gene021108:intron | 30.0% | |
CTAAAACGGGATTTATATAG+AGG | + | chr4.3:40021192-40021211 | None:intergenic | 30.0% | |
CTGTAACCAAAGTTATAGTT+AGG | + | chr4.3:40021813-40021832 | None:intergenic | 30.0% | |
TAGCTTATTTCATGACTTTG+TGG | + | chr4.3:40021654-40021673 | None:intergenic | 30.0% | |
TTCTGCAAACATCTATATTG+TGG | - | chr4.3:40021062-40021081 | MS.gene021108:intron | 30.0% | |
TTGGAGAATTTGTATAAGCA+AGG | - | chr4.3:40020533-40020552 | MS.gene021108:CDS | 30.0% | |
TTTAATAATTCTGCAGGACA+AGG | - | chr4.3:40022023-40022042 | MS.gene021108:CDS | 30.0% | |
TTTCTTCATGCAAATGTGTT+TGG | - | chr4.3:40021375-40021394 | MS.gene021108:intron | 30.0% | |
! | AAAACAAGGTGCATTTTCAA+CGG | + | chr4.3:40021114-40021133 | None:intergenic | 30.0% |
! | AACCTAATGAGTACTACTTT+TGG | + | chr4.3:40020884-40020903 | None:intergenic | 30.0% |
! | AAGGAAAGAATGTCTTTTAC+TGG | - | chr4.3:40020624-40020643 | MS.gene021108:CDS | 30.0% |
! | CTCTATATAAATCCCGTTTT+AGG | - | chr4.3:40021190-40021209 | MS.gene021108:intron | 30.0% |
!!! | TTCTTCCTTTTTCTAGTTCT+AGG | - | chr4.3:40020775-40020794 | MS.gene021108:CDS | 30.0% |
ATTAATGAGGAGGGTTCAAA+TGG | - | chr4.3:40020452-40020471 | MS.gene021108:CDS | 35.0% | |
ATTTCATGACTTTGTGGTTG+TGG | + | chr4.3:40021648-40021667 | None:intergenic | 35.0% | |
CCGCTAGCACAATTTAAATA+TGG | + | chr4.3:40020912-40020931 | None:intergenic | 35.0% | |
CTAGTATTCTACTGTAACGT+TGG | - | chr4.3:40021571-40021590 | MS.gene021108:intron | 35.0% | |
GAAGTTGAGAACATACCATT+TGG | + | chr4.3:40020758-40020777 | None:intergenic | 35.0% | |
GCTGAGAAAGTTATGTCAAA+TGG | - | chr4.3:40021729-40021748 | MS.gene021108:CDS | 35.0% | |
GTATTTCATCAAGTTCACGA+TGG | - | chr4.3:40020483-40020502 | MS.gene021108:CDS | 35.0% | |
TCTTGTATTTCTTCAGCACT+TGG | + | chr4.3:40020569-40020588 | None:intergenic | 35.0% | |
TGCCAAAAGTAGTACTCATT+AGG | - | chr4.3:40020879-40020898 | MS.gene021108:intron | 35.0% | |
TTAATGAGGAGGGTTCAAAT+GGG | - | chr4.3:40020453-40020472 | MS.gene021108:CDS | 35.0% | |
!! | GAAGCACTTTTGGATTTTGA+GGG | + | chr4.3:40021680-40021699 | None:intergenic | 35.0% |
!!! | AGAAGCACTTTTGGATTTTG+AGG | + | chr4.3:40021681-40021700 | None:intergenic | 35.0% |
AGAACCAGAATGTGTATCAG+TGG | + | chr4.3:40021940-40021959 | None:intergenic | 40.0% | |
AGTTCCACTGATACACATTC+TGG | - | chr4.3:40021933-40021952 | MS.gene021108:CDS | 40.0% | |
ATCCAACTGGCATATTGGAA+GGG | - | chr4.3:40021865-40021884 | MS.gene021108:CDS | 40.0% | |
CCATTTGGACAAATAGGTGA+AGG | + | chr4.3:40020743-40020762 | None:intergenic | 40.0% | |
CCTTCACCTATTTGTCCAAA+TGG | - | chr4.3:40020740-40020759 | MS.gene021108:CDS | 40.0% | |
CTGAAACAATAGAAGACACC+TGG | + | chr4.3:40021902-40021921 | None:intergenic | 40.0% | |
!! | TTCCTTCTAAAACCTACTGC+AGG | + | chr4.3:40021705-40021724 | None:intergenic | 40.0% |
!!! | TACCTGCAGTAGGTTTTAGA+AGG | - | chr4.3:40021700-40021719 | MS.gene021108:intron | 40.0% |
AATATGCCAGTTGGATGCAG+TGG | + | chr4.3:40021861-40021880 | None:intergenic | 45.0% | |
ACTGCATCCAACTGGCATAT+TGG | - | chr4.3:40021860-40021879 | MS.gene021108:CDS | 45.0% | |
ACTGCTAGGCTTAGAGTGTA+TGG | - | chr4.3:40020593-40020612 | MS.gene021108:CDS | 45.0% | |
AGAGTGTATGGTCACATCGA+AGG | - | chr4.3:40020605-40020624 | MS.gene021108:CDS | 45.0% | |
CATCCAACTGGCATATTGGA+AGG | - | chr4.3:40021864-40021883 | MS.gene021108:CDS | 45.0% | |
TGTGGTTGTGGTACGCAATA+TGG | + | chr4.3:40021636-40021655 | None:intergenic | 45.0% | |
TTCCCTTCCAATATGCCAGT+TGG | + | chr4.3:40021870-40021889 | None:intergenic | 45.0% | |
TTGTTTCCACTGCATCCAAC+TGG | - | chr4.3:40021852-40021871 | MS.gene021108:CDS | 45.0% | |
! | AAAGTGCTTCTACCTGCAGT+AGG | - | chr4.3:40021690-40021709 | MS.gene021108:intron | 45.0% |
!! | AAATTGTGCTAGCGGACTTG+TGG | - | chr4.3:40020917-40020936 | MS.gene021108:intron | 45.0% |
!! | GGTGAAGGATAAATGGGTTG+AGG | + | chr4.3:40020728-40020747 | None:intergenic | 45.0% |
!!! | ACTGCAGGTAGAAGCACTTT+TGG | + | chr4.3:40021690-40021709 | None:intergenic | 45.0% |
GGAAGGGAAAACAACTGACC+AGG | - | chr4.3:40021881-40021900 | MS.gene021108:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 40020428 | 40022052 | 40020428 | ID=MS.gene021108 |
chr4.3 | mRNA | 40020428 | 40022052 | 40020428 | ID=MS.gene021108.t1;Parent=MS.gene021108 |
chr4.3 | exon | 40021719 | 40022052 | 40021719 | ID=MS.gene021108.t1.exon1;Parent=MS.gene021108.t1 |
chr4.3 | CDS | 40021719 | 40022052 | 40021719 | ID=cds.MS.gene021108.t1;Parent=MS.gene021108.t1 |
chr4.3 | exon | 40020428 | 40020858 | 40020428 | ID=MS.gene021108.t1.exon2;Parent=MS.gene021108.t1 |
chr4.3 | CDS | 40020428 | 40020858 | 40020428 | ID=cds.MS.gene021108.t1;Parent=MS.gene021108.t1 |
Gene Sequence |
Protein sequence |