AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021135

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021135.t1 MTR_4g064160 94.126 681 34 4 1 677 8 686 0.0 1258
MS.gene021135.t1 MTR_7g062120 48.688 686 322 10 16 677 63 742 0.0 634
MS.gene021135.t1 MTR_2g097410 48.544 721 315 16 1 677 35 743 0.0 629
MS.gene021135.t1 MTR_4g064150 48.977 684 294 15 18 677 83 735 0.0 608
MS.gene021135.t1 MTR_4g064120 48.571 665 277 13 18 677 24 628 0.0 597
MS.gene021135.t1 MTR_4g064180 47.970 665 281 12 18 677 24 628 0.0 592
MS.gene021135.t1 MTR_2g097390 57.028 498 183 7 183 677 174 643 0.0 564
MS.gene021135.t1 MTR_2g097310 56.768 495 179 7 186 677 178 640 0.0 561
MS.gene021135.t1 MTR_2g097350 57.829 479 171 7 202 677 192 642 0.0 557
MS.gene021135.t1 MTR_2g097467 44.362 674 296 13 21 677 45 656 0.0 533
MS.gene021135.t1 MTR_2g097463 44.377 658 310 14 26 677 50 657 0.0 531
MS.gene021135.t1 MTR_2g097473 45.089 672 294 15 21 677 45 656 0.0 531
MS.gene021135.t1 MTR_4g064200 55.921 456 187 5 232 677 201 652 1.19e-172 508
MS.gene021135.t1 MTR_2g097380 50.905 497 171 9 183 677 138 563 9.47e-162 477
MS.gene021135.t1 MTR_2g082090 32.368 380 254 2 295 674 202 578 2.95e-68 234
MS.gene021135.t1 MTR_5g097480 32.796 372 249 1 303 674 173 543 4.07e-66 227
MS.gene021135.t1 MTR_7g027190 33.250 400 237 5 292 674 286 672 3.09e-64 225
MS.gene021135.t1 MTR_1g029420 32.973 370 247 1 305 674 223 591 6.05e-64 223
MS.gene021135.t1 MTR_2g026250 31.551 374 254 2 302 674 223 595 6.86e-63 220
MS.gene021135.t1 MTR_3g056110 30.979 439 287 8 242 674 113 541 1.42e-62 218
MS.gene021135.t1 MTR_4g133660 31.467 375 255 2 302 675 170 543 2.14e-62 217
MS.gene021135.t1 MTR_3g089055 31.351 370 253 1 305 674 196 564 6.14e-61 214
MS.gene021135.t1 MTR_3g089055 31.351 370 253 1 305 674 201 569 6.20e-61 214
MS.gene021135.t1 MTR_5g094450 32.361 377 248 5 303 674 157 531 1.01e-60 212
MS.gene021135.t1 MTR_8g442410 30.000 420 266 9 270 674 118 524 9.36e-55 196
MS.gene021135.t1 MTR_4g104020 29.688 384 247 6 304 674 146 519 1.44e-54 195
MS.gene021135.t1 MTR_4g076140 28.571 427 240 6 307 674 48 468 2.09e-48 177
MS.gene021135.t1 MTR_3g065980 30.155 388 241 7 302 674 167 539 9.04e-48 177
MS.gene021135.t1 MTR_7g074650 30.328 366 241 5 311 676 442 793 7.27e-47 178
MS.gene021135.t1 MTR_3g022830 27.512 418 244 7 308 674 26 435 4.26e-43 161
MS.gene021135.t1 MTR_4g097080 26.913 379 265 5 305 676 131 504 2.46e-39 152
MS.gene021135.t1 MTR_4g102790 26.494 385 263 9 303 676 288 663 4.50e-39 154
MS.gene021135.t1 MTR_2g089100 27.340 406 254 9 304 677 49 445 1.49e-38 149
MS.gene021135.t1 MTR_2g034250 26.873 387 262 7 302 674 205 584 9.60e-37 145
MS.gene021135.t1 MTR_2g034260 25.641 390 262 6 302 674 205 583 2.05e-36 145
MS.gene021135.t1 MTR_4g076020 28.226 372 234 8 311 677 88 431 2.69e-36 142
MS.gene021135.t1 MTR_7g057230 27.807 374 251 7 308 674 295 656 2.29e-34 139
MS.gene021135.t1 MTR_4g077760 28.760 379 248 9 304 674 190 554 4.85e-34 137
MS.gene021135.t1 MTR_1g069725 28.609 381 244 13 302 675 104 463 6.33e-34 135
MS.gene021135.t1 MTR_2g034280 25.255 392 259 6 302 674 198 574 1.44e-32 133
MS.gene021135.t1 MTR_7g109580 26.772 381 260 8 302 674 184 553 1.02e-31 130
MS.gene021135.t1 MTR_5g015490 26.893 383 262 7 307 676 114 491 1.34e-31 129
MS.gene021135.t1 MTR_5g009080 33.810 210 132 2 307 515 56 259 1.66e-31 129
MS.gene021135.t1 MTR_5g009080 30.201 149 104 0 526 674 329 477 6.94e-20 93.6
MS.gene021135.t1 MTR_1g096030 28.244 393 243 15 307 674 80 458 5.58e-29 121
MS.gene021135.t1 MTR_6g047750 26.963 382 254 9 305 674 293 661 2.76e-27 117
MS.gene021135.t1 MTR_1g086970 25.253 396 254 15 302 674 101 477 1.11e-26 114
MS.gene021135.t1 MTR_3g072710 25.648 386 245 12 316 675 131 500 5.68e-25 109
MS.gene021135.t1 MTR_4g095500 24.882 422 262 12 304 677 56 470 2.48e-24 107
MS.gene021135.t1 MTR_5g015950 24.466 421 267 12 304 677 32 448 5.61e-24 105
MS.gene021135.t1 MTR_3g053270 24.466 421 267 12 304 677 32 448 5.61e-24 105
MS.gene021135.t1 MTR_5g058860 25.862 406 264 15 293 675 106 497 1.34e-23 105
MS.gene021135.t1 MTR_2g099110 24.422 389 265 8 307 676 74 452 7.61e-22 99.4
MS.gene021135.t1 MTR_8g093070 25.570 395 241 18 304 677 136 498 1.52e-17 86.7
MS.gene021135.t1 MTR_0092s0100 22.439 410 278 10 277 674 346 727 3.12e-17 86.3
MS.gene021135.t1 MTR_0092s0100 22.439 410 278 10 277 674 349 730 3.57e-17 86.3
MS.gene021135.t1 MTR_8g020840 23.967 484 293 17 227 674 103 547 2.37e-13 73.6
MS.gene021135.t1 MTR_4g026485 19.417 412 284 11 277 674 246 623 4.54e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021135.t1 AT1G07530 54.825 684 271 10 30 677 86 767 0.0 728
MS.gene021135.t1 AT2G29060 50.288 694 282 15 8 676 38 693 0.0 652
MS.gene021135.t1 AT2G29060 50.442 678 268 15 8 676 38 656 0.0 645
MS.gene021135.t1 AT1G07520 47.429 700 303 20 1 677 38 695 0.0 552
MS.gene021135.t1 AT1G07520 47.429 700 303 20 1 677 39 696 0.0 552
MS.gene021135.t1 AT2G37650 44.118 680 321 12 20 676 59 702 0.0 541
MS.gene021135.t1 AT2G37650 44.118 680 321 12 20 676 71 714 0.0 541
MS.gene021135.t1 AT2G29065 46.747 661 278 16 27 677 34 630 0.0 537
MS.gene021135.t1 AT1G07520 51.978 556 218 16 143 677 4 531 1.64e-179 521
MS.gene021135.t1 AT1G07520 51.978 556 218 16 143 677 4 531 1.64e-179 521
MS.gene021135.t1 AT5G59450 47.222 468 241 4 214 677 135 600 1.45e-153 457
MS.gene021135.t1 AT3G46600 48.098 447 220 5 231 677 115 549 1.55e-145 435
MS.gene021135.t1 AT3G46600 48.098 447 220 4 231 677 147 581 2.60e-145 436
MS.gene021135.t1 AT3G46600 51.872 374 179 1 304 677 1 373 1.03e-139 414
MS.gene021135.t1 AT1G50600 33.871 372 245 1 303 674 155 525 4.73e-67 229
MS.gene021135.t1 AT1G50600 33.871 372 245 1 303 674 226 596 2.96e-66 229
MS.gene021135.t1 AT1G50600 33.871 372 245 1 303 674 230 600 3.31e-66 229
MS.gene021135.t1 AT5G48150 33.512 373 246 2 303 674 118 489 9.64e-65 222
MS.gene021135.t1 AT5G48150 33.512 373 246 2 303 674 118 489 9.64e-65 222
MS.gene021135.t1 AT5G48150 33.512 373 246 2 303 674 118 489 9.64e-65 222
MS.gene021135.t1 AT5G48150 33.512 373 246 2 303 674 118 489 9.64e-65 222
MS.gene021135.t1 AT1G21450 33.514 370 246 0 305 674 223 592 7.09e-64 223
MS.gene021135.t1 AT2G04890 32.796 372 242 2 303 674 49 412 8.15e-64 218
MS.gene021135.t1 AT4G17230 32.533 375 252 1 302 676 153 526 3.10e-55 197
MS.gene021135.t1 AT4G17230 32.533 375 252 1 302 676 153 526 3.10e-55 197
MS.gene021135.t1 AT3G03450 31.398 379 242 9 302 674 178 544 3.37e-51 186
MS.gene021135.t1 AT3G54220 30.000 370 240 6 311 676 297 651 1.70e-49 184
MS.gene021135.t1 AT1G66350 32.181 376 232 10 302 674 150 505 2.13e-49 181
MS.gene021135.t1 AT1G14920 30.688 378 241 8 302 674 167 528 3.00e-47 175
MS.gene021135.t1 AT5G17490 31.347 386 227 11 302 674 155 515 1.12e-46 173
MS.gene021135.t1 AT5G66770 31.436 369 239 8 311 674 224 583 3.91e-45 170
MS.gene021135.t1 AT2G01570 29.815 379 243 9 302 674 219 580 1.14e-43 166
MS.gene021135.t1 AT3G50650 28.771 358 238 6 325 674 193 541 7.99e-37 145
MS.gene021135.t1 AT5G41920 26.873 387 258 7 295 674 31 399 2.49e-36 141
MS.gene021135.t1 AT4G37650 27.110 391 260 8 306 676 145 530 1.32e-35 142
MS.gene021135.t1 AT1G63100 29.830 352 232 8 303 649 273 614 1.40e-35 143
MS.gene021135.t1 AT1G63100 29.830 352 232 8 303 649 248 589 1.74e-35 142
MS.gene021135.t1 AT5G52510 27.224 371 236 11 323 674 284 639 9.78e-32 131
MS.gene021135.t1 AT3G49950 27.720 386 257 11 307 676 30 409 1.91e-30 124
MS.gene021135.t1 AT1G55580 24.941 421 249 11 304 674 41 444 4.89e-29 121
MS.gene021135.t1 AT1G50420 30.189 212 139 2 307 515 57 262 5.83e-29 121
MS.gene021135.t1 AT1G50420 32.215 149 101 0 526 674 330 478 6.39e-21 97.1
MS.gene021135.t1 AT4G08250 25.055 451 304 14 245 674 39 476 1.44e-25 111
MS.gene021135.t1 AT3G13840 22.772 404 265 14 291 674 133 509 3.95e-13 72.8
MS.gene021135.t1 AT4G00150 21.149 383 264 7 300 674 201 553 3.04e-12 70.1

Find 161 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTCCACATTGTAGATTT+TGG 0.171656 4.4:-41936708 MS.gene021135:CDS
AAACAAAATCAACAGGAAAA+TGG 0.197416 4.4:+41937600 None:intergenic
TGTAACCGGTGGTGGATTTA+AGG 0.223081 4.4:-41937522 MS.gene021135:CDS
TCTTCTTCTGTAGCATTGTT+TGG 0.273251 4.4:+41937911 None:intergenic
TTACATTAACCAAATGCTTA+TGG 0.276145 4.4:-41937843 MS.gene021135:CDS
CTTCAAGTCCTCAACTTTGA+TGG 0.287285 4.4:+41936473 None:intergenic
GAATTCCTTGGTTGTTGATT+TGG 0.294509 4.4:-41937405 MS.gene021135:CDS
AGTAGTATGTATAAAGATAT+TGG 0.295160 4.4:+41936329 None:intergenic
AATGGAAGGTTCGGAATATA+AGG 0.302414 4.4:-41936095 MS.gene021135:CDS
TTACTAAGCAAGTTTGAATC+AGG 0.311461 4.4:+41937491 None:intergenic
GTCGGCAGCAGAGTTTCTTT+TGG 0.312934 4.4:+41936833 None:intergenic
ACAACCAAGGAATTCACTTT+AGG 0.334697 4.4:+41937413 None:intergenic
GGCAGGCCTGAAGCCAGGTT+GGG 0.342579 4.4:+41936590 None:intergenic
AAAGAAGAAGCAAATAATTC+TGG 0.356533 4.4:-41937104 MS.gene021135:CDS
TCAATGCTATTGCACAGAAA+TGG 0.371102 4.4:-41936500 MS.gene021135:CDS
GCTCTTGAAGCACGCATGGC+TGG 0.373992 4.4:-41936888 MS.gene021135:CDS
TGATGTTTGAGAAAGAGTTC+TGG 0.377337 4.4:-41936188 MS.gene021135:CDS
AAATGGGTTTGCAATATAGA+AGG 0.381555 4.4:+41937617 None:intergenic
GATAAGGTGCTGCTTGGAAC+GGG 0.386499 4.4:-41937176 MS.gene021135:CDS
CGGCAGGCCTGAAGCCAGGT+TGG 0.388141 4.4:+41936589 None:intergenic
AGTAATAGCAGTAGCGATTT+CGG 0.389012 4.4:-41937545 MS.gene021135:CDS
ATGTATGTTTCATGATTCAT+TGG 0.389528 4.4:-41937798 MS.gene021135:CDS
TGTCTTCTTCCATAAGCATT+TGG 0.390726 4.4:+41937834 None:intergenic
AACAAAATCAACAGGAAAAT+GGG 0.391391 4.4:+41937601 None:intergenic
TTCCATTTCCTGTATGTCTC+TGG 0.394619 4.4:+41936111 None:intergenic
AAATCTTTCTATGAAGTCAT+TGG 0.396607 4.4:-41937758 MS.gene021135:CDS
GCCGAGAGAGTCCAGGAGAC+AGG 0.397232 4.4:-41936570 MS.gene021135:CDS
CTTCTAAAAGAAGGAACAAA+AGG 0.397285 4.4:+41937374 None:intergenic
GGCCAGAGACATACAGGAAA+TGG 0.403238 4.4:-41936113 MS.gene021135:CDS
TCGCTAGATTCAAAATTGTA+TGG 0.404227 4.4:+41936742 None:intergenic
TCTGTAGCATTGTTTGGAGC+TGG 0.404262 4.4:+41937917 None:intergenic
TTACTGTTAAAACTATCATC+AGG 0.409982 4.4:+41937707 None:intergenic
TTGTGGTGAATTCTGTTTGT+CGG 0.410916 4.4:-41936431 MS.gene021135:CDS
GACAGGCTTCAATATACATT+TGG 0.411821 4.4:+41936796 None:intergenic
GCAGGCCTGAAGCCAGGTTG+GGG 0.414806 4.4:+41936591 None:intergenic
AAGGGAGGTTCAGGAGGTAG+TGG 0.418003 4.4:-41937354 MS.gene021135:CDS
TTTATACATACTACTGTCAA+TGG 0.418864 4.4:-41936321 MS.gene021135:CDS
CAATGCTATTGCACAGAAAT+GGG 0.422432 4.4:-41936499 MS.gene021135:CDS
CTCTTGAAGCACGCATGGCT+GGG 0.426919 4.4:-41936887 MS.gene021135:CDS
GCAATAGCATTGAACTCAAA+TGG 0.428641 4.4:+41936510 None:intergenic
GTCTCCTGGACTCTCTCGGC+AGG 0.430954 4.4:+41936573 None:intergenic
TTGAACCGTGTCGCAAAGAA+TGG 0.433149 4.4:+41936285 None:intergenic
GTAGTATGTATAAAGATATT+GGG 0.433213 4.4:+41936330 None:intergenic
AGGAGGAAGCGTAAATTATT+CGG 0.433733 4.4:+41935944 None:intergenic
TTTCAAGCTACTTCAATGAA+TGG 0.435532 4.4:-41937578 MS.gene021135:CDS
GCATCCGTTACGGCTTTCAA+TGG 0.436217 4.4:-41936686 MS.gene021135:CDS
CCTCCTAAGCTGCTCTTGAC+AGG 0.440626 4.4:-41936624 MS.gene021135:CDS
AATTTACGCTTCCTCCTGTT+GGG 0.441011 4.4:-41935938 MS.gene021135:CDS
CTAGGCGAAGCCCTGTCTCC+TGG 0.442369 4.4:+41936559 None:intergenic
TAATTTCAAAACAGCATCCC+TGG 0.447641 4.4:+41936368 None:intergenic
TGCAAGCTTCTTGAATGGAC+AGG 0.451062 4.4:+41936779 None:intergenic
CTCTCGGCAGGCCTGAAGCC+AGG 0.453760 4.4:+41936585 None:intergenic
AAGGCAATATTCTTCTCCAC+TGG 0.454228 4.4:-41936949 MS.gene021135:CDS
GATGTTTGAGAAAGAGTTCT+GGG 0.455142 4.4:-41936187 MS.gene021135:CDS
TCGAGAGGCCAGAGACATAC+AGG 0.459712 4.4:-41936119 MS.gene021135:CDS
ATCCCTGTCAAGAGCAGCTT+AGG 0.460560 4.4:+41936621 None:intergenic
GTCCTATGCAGGTACCCAAC+AGG 0.461795 4.4:+41935924 None:intergenic
AGAAAGGAAGAGAAGGCTAA+TGG 0.462372 4.4:-41937149 MS.gene021135:CDS
ATTCTTTGCGACACGGTTCA+AGG 0.463902 4.4:-41936283 MS.gene021135:CDS
GAAGCACGCATGGCTGGGAC+TGG 0.468425 4.4:-41936882 MS.gene021135:CDS
AGTAGCGATTTCGGTGTAAC+CGG 0.469350 4.4:-41937536 MS.gene021135:CDS
AGAAGAAGAAGATTCACCTT+TGG 0.473696 4.4:-41937897 MS.gene021135:CDS
CATACAGGAAATGGAAGGTT+CGG 0.475232 4.4:-41936104 MS.gene021135:CDS
TGAACCGTGTCGCAAAGAAT+GGG 0.479940 4.4:+41936286 None:intergenic
ATGAATGCAAGCTTCTTGAA+TGG 0.481139 4.4:+41936774 None:intergenic
TAATTTACGCTTCCTCCTGT+TGG 0.482014 4.4:-41935939 MS.gene021135:CDS
TTCAGGAGGTAGTGGTTGAG+AGG 0.482313 4.4:-41937346 MS.gene021135:CDS
TCAGGGCTTTGTACAGAAGA+AGG 0.485059 4.4:+41937725 None:intergenic
TGGATTTAAGCAACTCCCCT+TGG 0.498423 4.4:-41936070 MS.gene021135:CDS
GATTTCGGTGTAACCGGTGG+TGG 0.506809 4.4:-41937530 MS.gene021135:CDS
TCTTCCTAAAGTGAATTCCT+TGG 0.507125 4.4:-41937417 MS.gene021135:CDS
TCAGGAGGTAGTGGTTGAGA+GGG 0.507729 4.4:-41937345 MS.gene021135:CDS
CAGGCCTGCCGAGAGAGTCC+AGG 0.510078 4.4:-41936577 MS.gene021135:CDS
GATAAACGATAAATAAGGGC+AGG 0.512065 4.4:+41936663 None:intergenic
ATGAGTTATTGAGGCAGATA+AGG 0.512815 4.4:-41936968 MS.gene021135:CDS
TATTCTTCTCCACTGGGTGA+TGG 0.514009 4.4:-41936942 MS.gene021135:CDS
TTATACATACTACTGTCAAT+GGG 0.515737 4.4:-41936320 MS.gene021135:CDS
CTGCATGCTGCAAGGATGGA+AGG 0.517952 4.4:-41935968 MS.gene021135:CDS
CTCCTGTTGGGTACCTGCAT+AGG 0.518592 4.4:-41935926 None:intergenic
GCTATCGGAGCTGTTTGATA+AGG 0.519129 4.4:-41937192 MS.gene021135:CDS
GGGGAGGAAGAATCACGAGC+GGG 0.521175 4.4:-41937285 MS.gene021135:CDS
GAAAGGAAGAGAAGGCTAAT+GGG 0.521362 4.4:-41937148 MS.gene021135:CDS
AAGAAACTCTGCTGCCGACA+TGG 0.522015 4.4:-41936829 MS.gene021135:CDS
TGTTGCCTTGTTTCTTACCA+CGG 0.522059 4.4:+41937069 None:intergenic
AACGTTCACAATACCTTGCT+AGG 0.524003 4.4:+41936541 None:intergenic
CCGAGAGAGTCCAGGAGACA+GGG 0.524887 4.4:-41936569 MS.gene021135:CDS
CAGGCCTGAAGCCAGGTTGG+GGG 0.525521 4.4:+41936592 None:intergenic
ATCATTGCCAAGTCCTATGC+AGG 0.526668 4.4:+41935913 None:intergenic
TGATGATGACAGTGAGCTAT+CGG 0.527539 4.4:-41937207 MS.gene021135:CDS
TGAACCTCCCTTCTAAAAGA+AGG 0.528231 4.4:+41937365 None:intergenic
ATCGTTTATCAAAACGACCT+GGG 0.530234 4.4:-41936650 MS.gene021135:CDS
GAAGCAAATAATTCTGGTGG+TGG 0.534103 4.4:-41937098 MS.gene021135:CDS
TGATAAGGTGCTGCTTGGAA+CGG 0.538662 4.4:-41937177 MS.gene021135:CDS
GAAACTGCATGCTGCAAGGA+TGG 0.539727 4.4:-41935972 MS.gene021135:CDS
GGGTGATGGATCTCAGAGGC+TGG 0.539936 4.4:-41936928 MS.gene021135:CDS
CTGTTTGATAAGGTGCTGCT+TGG 0.542358 4.4:-41937182 MS.gene021135:CDS
GAGAAATCAATTTCATCCAA+AGG 0.543170 4.4:+41937881 None:intergenic
GCTTGGAACGGGGTGCAGAA+AGG 0.543390 4.4:-41937165 MS.gene021135:CDS
CCCTGTCTCCTGGACTCTCT+CGG 0.545286 4.4:+41936569 None:intergenic
TTAATGAGATGTTTATCCAA+GGG 0.545301 4.4:+41936054 None:intergenic
GTTAATGAGATGTTTATCCA+AGG 0.545722 4.4:+41936053 None:intergenic
CAGTAGTAGTAATTCTGTTG+AGG 0.547986 4.4:-41937681 MS.gene021135:CDS
CCTGTCAAGAGCAGCTTAGG+AGG 0.549308 4.4:+41936624 None:intergenic
TACTGTTAAAACTATCATCA+GGG 0.554998 4.4:+41937708 None:intergenic
CAGTTGTGTTGAATAGTCCC+AGG 0.555999 4.4:-41936386 MS.gene021135:CDS
AAGGTTCGGAATATAAGGGC+TGG 0.559644 4.4:-41936090 MS.gene021135:CDS
ACCGGTGGTGGATTTAAGGA+TGG 0.561936 4.4:-41937518 MS.gene021135:CDS
ATGGAAGGTTCGGAATATAA+GGG 0.563303 4.4:-41936094 MS.gene021135:CDS
TTCTAAAAGAAGGAACAAAA+GGG 0.563412 4.4:+41937375 None:intergenic
ATGAATATTATAGCTTGTGA+AGG 0.563558 4.4:-41936153 MS.gene021135:CDS
TATCGTTTATCAAAACGACC+TGG 0.572065 4.4:-41936651 MS.gene021135:CDS
CTCCTAAGCTGCTCTTGACA+GGG 0.575690 4.4:-41936623 MS.gene021135:CDS
AGGCAACAAGAAGGGTGTTG+TGG 0.575933 4.4:-41937054 MS.gene021135:CDS
GTCTGTGTTGCAATTTGAGA+GGG 0.576245 4.4:-41937462 MS.gene021135:CDS
TGCATGCTGCAAGGATGGAA+GGG 0.578283 4.4:-41935967 MS.gene021135:CDS
AATTTCAAAACAGCATCCCT+GGG 0.578395 4.4:+41936369 None:intergenic
GAATGCTCTTGAAGCACGCA+TGG 0.581409 4.4:-41936892 MS.gene021135:CDS
TCGTTTATCAAAACGACCTG+GGG 0.584413 4.4:-41936649 MS.gene021135:CDS
ATGCCCCATTCTTTGCGACA+CGG 0.584723 4.4:-41936290 MS.gene021135:CDS
GGGAGGAAGAATCACGAGCG+GGG 0.584989 4.4:-41937284 MS.gene021135:CDS
AGAAGGGTGTTGTGGATCTG+AGG 0.585113 4.4:-41937046 MS.gene021135:CDS
AGACAGGGCTTCGCCTAGCA+AGG 0.589816 4.4:-41936554 MS.gene021135:CDS
TGTTTGAGAAAGAGTTCTGG+GGG 0.594182 4.4:-41936185 MS.gene021135:CDS
ATGGGAAACCATCAAAGTTG+AGG 0.594978 4.4:-41936481 MS.gene021135:CDS
AAGAAACAAGGCAACAAGAA+GGG 0.596770 4.4:-41937062 MS.gene021135:CDS
AGGCAATATTCTTCTCCACT+GGG 0.596774 4.4:-41936948 MS.gene021135:CDS
TTGGTACGCTTTCACCATGT+CGG 0.598816 4.4:+41936815 None:intergenic
TCCATCCTTAAATCCACCAC+CGG 0.599728 4.4:+41937517 None:intergenic
CAAATGCTAATGAGTTATTG+AGG 0.600348 4.4:-41936977 MS.gene021135:CDS
CAGGGCTTTGTACAGAAGAA+GGG 0.601972 4.4:+41937726 None:intergenic
CAGGCCATTGAAAGCCGTAA+CGG 0.602915 4.4:+41936682 None:intergenic
AGCTTGTGAAGGTTCTCAGA+GGG 0.603648 4.4:-41936142 MS.gene021135:CDS
AATGCTTATGGAAGAAGACA+TGG 0.605099 4.4:-41937831 MS.gene021135:CDS
GCAATTTGAGAGGGGTGTCG+AGG 0.606778 4.4:-41937453 MS.gene021135:CDS
TGTGGATCTGAGGACAATGT+TGG 0.619556 4.4:-41937036 MS.gene021135:CDS
GAAGAAGCAAATAATTCTGG+TGG 0.623065 4.4:-41937101 MS.gene021135:CDS
TAATGAGATGTTTATCCAAG+GGG 0.623159 4.4:+41936055 None:intergenic
TAAGAAACAAGGCAACAAGA+AGG 0.624363 4.4:-41937063 MS.gene021135:CDS
GTTAATGTAACGAAGAACAG+TGG 0.624527 4.4:+41937856 None:intergenic
AGCGATTTCGGTGTAACCGG+TGG 0.625322 4.4:-41937533 MS.gene021135:CDS
AAAAGCCGTGGTAAGAAACA+AGG 0.633423 4.4:-41937074 MS.gene021135:CDS
AATGAATCATGAAACATACA+TGG 0.637630 4.4:+41937800 None:intergenic
GGAAGAGAAGGCTAATGGGT+CGG 0.641207 4.4:-41937144 MS.gene021135:CDS
ATGTTTGAGAAAGAGTTCTG+GGG 0.644129 4.4:-41936186 MS.gene021135:CDS
GAACCGTGTCGCAAAGAATG+GGG 0.648096 4.4:+41936287 None:intergenic
CACTGGGTGATGGATCTCAG+AGG 0.650910 4.4:-41936932 MS.gene021135:CDS
GGGGTGCAGAAAGGAAGAGA+AGG 0.651471 4.4:-41937156 MS.gene021135:CDS
GATGGAAACTGCATGCTGCA+AGG 0.652853 4.4:-41935976 MS.gene021135:CDS
AGTCTGTGTTGCAATTTGAG+AGG 0.657162 4.4:-41937463 MS.gene021135:CDS
CTTTGCGACACGGTTCAAGG+AGG 0.657665 4.4:-41936280 MS.gene021135:CDS
AAGGTTCTCAGAGGGTCGAG+AGG 0.658012 4.4:-41936134 MS.gene021135:CDS
AGTTGTGTTGAATAGTCCCA+GGG 0.661922 4.4:-41936385 MS.gene021135:CDS
AGAGACATACAGGAAATGGA+AGG 0.664271 4.4:-41936109 MS.gene021135:CDS
ATAAGGTGCTGCTTGGAACG+GGG 0.670615 4.4:-41937175 MS.gene021135:CDS
GGATGCCAAAATCTACAATG+TGG 0.681308 4.4:+41936703 None:intergenic
CTATGCAGGTACCCAACAGG+AGG 0.684912 4.4:+41935927 None:intergenic
TCTGTGTTGCAATTTGAGAG+GGG 0.685234 4.4:-41937461 MS.gene021135:CDS
TAGCTTGTGAAGGTTCTCAG+AGG 0.697926 4.4:-41936143 MS.gene021135:CDS
CGTTTATCAAAACGACCTGG+GGG 0.713845 4.4:-41936648 MS.gene021135:CDS
CTCTGAGATCCATCACCCAG+TGG 0.732644 4.4:+41936933 None:intergenic
TTGCTCGTGAAGATCAAACG+AGG 0.754863 4.4:-41936212 MS.gene021135:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATAAACGATAAATAA+GGG + chr4.4:41937209-41937228 None:intergenic 15.0%
!! AGTAGTATGTATAAAGATAT+TGG + chr4.4:41937539-41937558 None:intergenic 20.0%
!! GTAGTATGTATAAAGATATT+GGG + chr4.4:41937538-41937557 None:intergenic 20.0%
!!! ATGCTGTTTTGAAATTAATT+AGG - chr4.4:41937503-41937522 MS.gene021135:CDS 20.0%
!!! GTTTTGATAAACGATAAATA+AGG + chr4.4:41937210-41937229 None:intergenic 20.0%
!!! TGCTGTTTTGAAATTAATTA+GGG - chr4.4:41937504-41937523 MS.gene021135:CDS 20.0%
! AAACAAAATCAACAGGAAAA+TGG + chr4.4:41936268-41936287 None:intergenic 25.0%
! AAAGAAAAATGAACTTCTTG+TGG - chr4.4:41937417-41937436 MS.gene021135:CDS 25.0%
! AAAGAAGAAGCAAATAATTC+TGG - chr4.4:41936761-41936780 MS.gene021135:CDS 25.0%
! AAATCTTTCTATGAAGTCAT+TGG - chr4.4:41936107-41936126 MS.gene021135:CDS 25.0%
! AACAAAATCAACAGGAAAAT+GGG + chr4.4:41936267-41936286 None:intergenic 25.0%
! AATGAATCATGAAACATACA+TGG + chr4.4:41936068-41936087 None:intergenic 25.0%
! ATGTATGTTTCATGATTCAT+TGG - chr4.4:41936067-41936086 MS.gene021135:CDS 25.0%
! TACTGTTAAAACTATCATCA+GGG + chr4.4:41936160-41936179 None:intergenic 25.0%
! TTAATGAGATGTTTATCCAA+GGG + chr4.4:41937814-41937833 None:intergenic 25.0%
! TTACATTAACCAAATGCTTA+TGG - chr4.4:41936022-41936041 MS.gene021135:CDS 25.0%
! TTACTGTTAAAACTATCATC+AGG + chr4.4:41936161-41936180 None:intergenic 25.0%
! TTATACATACTACTGTCAAT+GGG - chr4.4:41937545-41937564 MS.gene021135:CDS 25.0%
! TTTATACATACTACTGTCAA+TGG - chr4.4:41937544-41937563 MS.gene021135:CDS 25.0%
!! ATGAATATTATAGCTTGTGA+AGG - chr4.4:41937712-41937731 MS.gene021135:CDS 25.0%
!! TTCTAAAAGAAGGAACAAAA+GGG + chr4.4:41936493-41936512 None:intergenic 25.0%
!!! TTTTGTTCCTTCTTTTAGAA+GGG - chr4.4:41936493-41936512 MS.gene021135:CDS 25.0%
CAAATGCTAATGAGTTATTG+AGG - chr4.4:41936888-41936907 MS.gene021135:CDS 30.0%
GAGAAATCAATTTCATCCAA+AGG + chr4.4:41935987-41936006 None:intergenic 30.0%
GCTTGAAAAACAAAATCAAC+AGG + chr4.4:41936275-41936294 None:intergenic 30.0%
GTTAATGAGATGTTTATCCA+AGG + chr4.4:41937815-41937834 None:intergenic 30.0%
TAATGAGATGTTTATCCAAG+GGG + chr4.4:41937813-41937832 None:intergenic 30.0%
TCGCTAGATTCAAAATTGTA+TGG + chr4.4:41937126-41937145 None:intergenic 30.0%
TTACTAAGCAAGTTTGAATC+AGG + chr4.4:41936377-41936396 None:intergenic 30.0%
TTTCAAGCTACTTCAATGAA+TGG - chr4.4:41936287-41936306 MS.gene021135:CDS 30.0%
! AAATGGGTTTGCAATATAGA+AGG + chr4.4:41936251-41936270 None:intergenic 30.0%
! ATTTTCCAAATCAACAACCA+AGG + chr4.4:41936468-41936487 None:intergenic 30.0%
! CTTCTAAAAGAAGGAACAAA+AGG + chr4.4:41936494-41936513 None:intergenic 30.0%
! CTTTTGTTCCTTCTTTTAGA+AGG - chr4.4:41936492-41936511 MS.gene021135:CDS 30.0%
! TACAATTTTGAATCTAGCGA+AGG - chr4.4:41937126-41937145 MS.gene021135:CDS 30.0%
!! GATTTTATGCTTGTTGAAGA+TGG - chr4.4:41937871-41937890 MS.gene021135:CDS 30.0%
AAGAAACAAGGCAACAAGAA+GGG - chr4.4:41936803-41936822 MS.gene021135:CDS 35.0%
AATGCTTATGGAAGAAGACA+TGG - chr4.4:41936034-41936053 MS.gene021135:CDS 35.0%
AATGGAAGGTTCGGAATATA+AGG - chr4.4:41937770-41937789 MS.gene021135:CDS 35.0%
AATTTCAAAACAGCATCCCT+GGG + chr4.4:41937499-41937518 None:intergenic 35.0%
ACAACCAAGGAATTCACTTT+AGG + chr4.4:41936455-41936474 None:intergenic 35.0%
AGAAGAAGAAGATTCACCTT+TGG - chr4.4:41935968-41935987 MS.gene021135:CDS 35.0%
AGTAATAGCAGTAGCGATTT+CGG - chr4.4:41936320-41936339 MS.gene021135:CDS 35.0%
ATCGTTTATCAAAACGACCT+GGG - chr4.4:41937215-41937234 MS.gene021135:CDS 35.0%
ATGAATGCAAGCTTCTTGAA+TGG + chr4.4:41937094-41937113 None:intergenic 35.0%
ATGAGTTATTGAGGCAGATA+AGG - chr4.4:41936897-41936916 MS.gene021135:CDS 35.0%
ATGGAAGGTTCGGAATATAA+GGG - chr4.4:41937771-41937790 MS.gene021135:CDS 35.0%
ATGTTTGAGAAAGAGTTCTG+GGG - chr4.4:41937679-41937698 MS.gene021135:CDS 35.0%
CAATGCTATTGCACAGAAAT+GGG - chr4.4:41937366-41937385 MS.gene021135:CDS 35.0%
CAGTAGTAGTAATTCTGTTG+AGG - chr4.4:41936184-41936203 MS.gene021135:CDS 35.0%
GAAGAAGCAAATAATTCTGG+TGG - chr4.4:41936764-41936783 MS.gene021135:CDS 35.0%
GACAGGCTTCAATATACATT+TGG + chr4.4:41937072-41937091 None:intergenic 35.0%
GATAAACGATAAATAAGGGC+AGG + chr4.4:41937205-41937224 None:intergenic 35.0%
GATGTTTGAGAAAGAGTTCT+GGG - chr4.4:41937678-41937697 MS.gene021135:CDS 35.0%
GTTAATGTAACGAAGAACAG+TGG + chr4.4:41936012-41936031 None:intergenic 35.0%
TAAGAAACAAGGCAACAAGA+AGG - chr4.4:41936802-41936821 MS.gene021135:CDS 35.0%
TAATTTCAAAACAGCATCCC+TGG + chr4.4:41937500-41937519 None:intergenic 35.0%
TATCGTTTATCAAAACGACC+TGG - chr4.4:41937214-41937233 MS.gene021135:CDS 35.0%
TCAATGCTATTGCACAGAAA+TGG - chr4.4:41937365-41937384 MS.gene021135:CDS 35.0%
TCTTCCTAAAGTGAATTCCT+TGG - chr4.4:41936448-41936467 MS.gene021135:CDS 35.0%
TCTTCTTCTGTAGCATTGTT+TGG + chr4.4:41935957-41935976 None:intergenic 35.0%
TGATGTTTGAGAAAGAGTTC+TGG - chr4.4:41937677-41937696 MS.gene021135:CDS 35.0%
TGTCTTCTTCCATAAGCATT+TGG + chr4.4:41936034-41936053 None:intergenic 35.0%
TTGGAGCTGGTTGAAAAAAA+GGG + chr4.4:41935938-41935957 None:intergenic 35.0%
TTGTGGTGAATTCTGTTTGT+CGG - chr4.4:41937434-41937453 MS.gene021135:CDS 35.0%
! ACTCTCCACATTGTAGATTT+TGG - chr4.4:41937157-41937176 MS.gene021135:CDS 35.0%
! AGGAGGAAGCGTAAATTATT+CGG + chr4.4:41937924-41937943 None:intergenic 35.0%
! GAATTCCTTGGTTGTTGATT+TGG - chr4.4:41936460-41936479 MS.gene021135:CDS 35.0%
! GCAATAGCATTGAACTCAAA+TGG + chr4.4:41937358-41937377 None:intergenic 35.0%
! TTTGGAGCTGGTTGAAAAAA+AGG + chr4.4:41935939-41935958 None:intergenic 35.0%
AAAAGCCGTGGTAAGAAACA+AGG - chr4.4:41936791-41936810 MS.gene021135:CDS 40.0%
AACGTTCACAATACCTTGCT+AGG + chr4.4:41937327-41937346 None:intergenic 40.0%
AAGGCAATATTCTTCTCCAC+TGG - chr4.4:41936916-41936935 MS.gene021135:CDS 40.0%
AATTTACGCTTCCTCCTGTT+GGG - chr4.4:41937927-41937946 MS.gene021135:CDS 40.0%
AGAAAGGAAGAGAAGGCTAA+TGG - chr4.4:41936716-41936735 MS.gene021135:CDS 40.0%
AGAGACATACAGGAAATGGA+AGG - chr4.4:41937756-41937775 MS.gene021135:CDS 40.0%
AGGCAATATTCTTCTCCACT+GGG - chr4.4:41936917-41936936 MS.gene021135:CDS 40.0%
AGTCTGTGTTGCAATTTGAG+AGG - chr4.4:41936402-41936421 MS.gene021135:CDS 40.0%
AGTTGTGTTGAATAGTCCCA+GGG - chr4.4:41937480-41937499 MS.gene021135:CDS 40.0%
ATGGGAAACCATCAAAGTTG+AGG - chr4.4:41937384-41937403 MS.gene021135:CDS 40.0%
CATACAGGAAATGGAAGGTT+CGG - chr4.4:41937761-41937780 MS.gene021135:CDS 40.0%
CTTCAAGTCCTCAACTTTGA+TGG + chr4.4:41937395-41937414 None:intergenic 40.0%
GAAAGGAAGAGAAGGCTAAT+GGG - chr4.4:41936717-41936736 MS.gene021135:CDS 40.0%
GAAGCAAATAATTCTGGTGG+TGG - chr4.4:41936767-41936786 MS.gene021135:CDS 40.0%
GGATGCCAAAATCTACAATG+TGG + chr4.4:41937165-41937184 None:intergenic 40.0%
GTCTGTGTTGCAATTTGAGA+GGG - chr4.4:41936403-41936422 MS.gene021135:CDS 40.0%
TAATTTACGCTTCCTCCTGT+TGG - chr4.4:41937926-41937945 MS.gene021135:CDS 40.0%
TCGTTTATCAAAACGACCTG+GGG - chr4.4:41937216-41937235 MS.gene021135:CDS 40.0%
TCTGTGTTGCAATTTGAGAG+GGG - chr4.4:41936404-41936423 MS.gene021135:CDS 40.0%
TTCCATTTCCTGTATGTCTC+TGG + chr4.4:41937757-41937776 None:intergenic 40.0%
! TGAACCTCCCTTCTAAAAGA+AGG + chr4.4:41936503-41936522 None:intergenic 40.0%
! TGATGATGACAGTGAGCTAT+CGG - chr4.4:41936658-41936677 MS.gene021135:CDS 40.0%
! TGTTTGAGAAAGAGTTCTGG+GGG - chr4.4:41937680-41937699 MS.gene021135:CDS 40.0%
!! AACATTTTTCAGCTGAGTCG+AGG - chr4.4:41936558-41936577 MS.gene021135:CDS 40.0%
!! ACATTTTTCAGCTGAGTCGA+GGG - chr4.4:41936559-41936578 MS.gene021135:CDS 40.0%
!! GTAGATTTTGGCATCCGTTA+CGG - chr4.4:41937169-41937188 MS.gene021135:CDS 40.0%
!! TGTTCCTTCTTTTAGAAGGG+AGG - chr4.4:41936496-41936515 MS.gene021135:CDS 40.0%
!! TGTTGCCTTGTTTCTTACCA+CGG + chr4.4:41936799-41936818 None:intergenic 40.0%
!! TTCTTTTAGAAGGGAGGTTC+AGG - chr4.4:41936502-41936521 MS.gene021135:CDS 40.0%
AAGGTTCGGAATATAAGGGC+TGG - chr4.4:41937775-41937794 MS.gene021135:CDS 45.0%
AGCTTGTGAAGGTTCTCAGA+GGG - chr4.4:41937723-41937742 MS.gene021135:CDS 45.0%
ATTCTTTGCGACACGGTTCA+AGG - chr4.4:41937582-41937601 MS.gene021135:CDS 45.0%
CAGTTGTGTTGAATAGTCCC+AGG - chr4.4:41937479-41937498 MS.gene021135:CDS 45.0%
CGTTTATCAAAACGACCTGG+GGG - chr4.4:41937217-41937236 MS.gene021135:CDS 45.0%
GCTATCGGAGCTGTTTGATA+AGG - chr4.4:41936673-41936692 MS.gene021135:CDS 45.0%
TATTCTTCTCCACTGGGTGA+TGG - chr4.4:41936923-41936942 MS.gene021135:CDS 45.0%
TCCATCCTTAAATCCACCAC+CGG + chr4.4:41936351-41936370 None:intergenic 45.0%
TGAACCGTGTCGCAAAGAAT+GGG + chr4.4:41937582-41937601 None:intergenic 45.0%
TGCAAGCTTCTTGAATGGAC+AGG + chr4.4:41937089-41937108 None:intergenic 45.0%
TGGATTTAAGCAACTCCCCT+TGG - chr4.4:41937795-41937814 MS.gene021135:CDS 45.0%
TGTGGATCTGAGGACAATGT+TGG - chr4.4:41936829-41936848 MS.gene021135:CDS 45.0%
TTGAACCGTGTCGCAAAGAA+TGG + chr4.4:41937583-41937602 None:intergenic 45.0%
TTGCTCGTGAAGATCAAACG+AGG - chr4.4:41937653-41937672 MS.gene021135:CDS 45.0%
TTGGTACGCTTTCACCATGT+CGG + chr4.4:41937053-41937072 None:intergenic 45.0%
! AGTAGCGATTTCGGTGTAAC+CGG - chr4.4:41936329-41936348 MS.gene021135:CDS 45.0%
! CAGGGCTTTGTACAGAAGAA+GGG + chr4.4:41936142-41936161 None:intergenic 45.0%
! TAGCTTGTGAAGGTTCTCAG+AGG - chr4.4:41937722-41937741 MS.gene021135:CDS 45.0%
! TCAGGGCTTTGTACAGAAGA+AGG + chr4.4:41936143-41936162 None:intergenic 45.0%
! TCTGTAGCATTGTTTGGAGC+TGG + chr4.4:41935951-41935970 None:intergenic 45.0%
!! ATTTTTCAGCTGAGTCGAGG+GGG - chr4.4:41936561-41936580 MS.gene021135:CDS 45.0%
!! CATTTTTCAGCTGAGTCGAG+GGG - chr4.4:41936560-41936579 MS.gene021135:CDS 45.0%
!! CTGTTTGATAAGGTGCTGCT+TGG - chr4.4:41936683-41936702 MS.gene021135:CDS 45.0%
!! TGATAAGGTGCTGCTTGGAA+CGG - chr4.4:41936688-41936707 MS.gene021135:CDS 45.0%
!! TGTAACCGGTGGTGGATTTA+AGG - chr4.4:41936343-41936362 MS.gene021135:CDS 45.0%
!! TTTTAGAAGGGAGGTTCAGG+AGG - chr4.4:41936505-41936524 MS.gene021135:CDS 45.0%
AAGAAACTCTGCTGCCGACA+TGG - chr4.4:41937036-41937055 MS.gene021135:CDS 50.0%
ATCCCTGTCAAGAGCAGCTT+AGG + chr4.4:41937247-41937266 None:intergenic 50.0%
ATGCCCCATTCTTTGCGACA+CGG - chr4.4:41937575-41937594 MS.gene021135:CDS 50.0%
CAGGCCATTGAAAGCCGTAA+CGG + chr4.4:41937186-41937205 None:intergenic 50.0%
CTCCTAAGCTGCTCTTGACA+GGG - chr4.4:41937242-41937261 MS.gene021135:CDS 50.0%
GAAACTGCATGCTGCAAGGA+TGG - chr4.4:41937893-41937912 MS.gene021135:CDS 50.0%
GAACCGTGTCGCAAAGAATG+GGG + chr4.4:41937581-41937600 None:intergenic 50.0%
GAATGCTCTTGAAGCACGCA+TGG - chr4.4:41936973-41936992 MS.gene021135:CDS 50.0%
GATGGAAACTGCATGCTGCA+AGG - chr4.4:41937889-41937908 MS.gene021135:CDS 50.0%
GCATCCGTTACGGCTTTCAA+TGG - chr4.4:41937179-41937198 MS.gene021135:CDS 50.0%
GGCCAGAGACATACAGGAAA+TGG - chr4.4:41937752-41937771 MS.gene021135:CDS 50.0%
TGCATGCTGCAAGGATGGAA+GGG - chr4.4:41937898-41937917 MS.gene021135:CDS 50.0%
! GGAAGAGAAGGCTAATGGGT+CGG - chr4.4:41936721-41936740 MS.gene021135:CDS 50.0%
! GTCGGCAGCAGAGTTTCTTT+TGG + chr4.4:41937035-41937054 None:intergenic 50.0%
! TCAGGAGGTAGTGGTTGAGA+GGG - chr4.4:41936520-41936539 MS.gene021135:CDS 50.0%
! TTCAGGAGGTAGTGGTTGAG+AGG - chr4.4:41936519-41936538 MS.gene021135:CDS 50.0%
!! ACCGGTGGTGGATTTAAGGA+TGG - chr4.4:41936347-41936366 MS.gene021135:CDS 50.0%
!! AGAAGGGTGTTGTGGATCTG+AGG - chr4.4:41936819-41936838 MS.gene021135:CDS 50.0%
!! AGGCAACAAGAAGGGTGTTG+TGG - chr4.4:41936811-41936830 MS.gene021135:CDS 50.0%
!! ATAAGGTGCTGCTTGGAACG+GGG - chr4.4:41936690-41936709 MS.gene021135:CDS 50.0%
!! GATAAGGTGCTGCTTGGAAC+GGG - chr4.4:41936689-41936708 MS.gene021135:CDS 50.0%
!! TGAGAAAGAGTTCTGGGGGA+GGG - chr4.4:41937684-41937703 MS.gene021135:CDS 50.0%
!! TTGAGAAAGAGTTCTGGGGG+AGG - chr4.4:41937683-41937702 MS.gene021135:CDS 50.0%
AAGGGAGGTTCAGGAGGTAG+TGG - chr4.4:41936511-41936530 MS.gene021135:CDS 55.0%
AAGGTTCTCAGAGGGTCGAG+AGG - chr4.4:41937731-41937750 MS.gene021135:CDS 55.0%
CCTCCTAAGCTGCTCTTGAC+AGG - chr4.4:41937241-41937260 MS.gene021135:CDS 55.0%
CCTGTCAAGAGCAGCTTAGG+AGG + chr4.4:41937244-41937263 None:intergenic 55.0%
CTATGCAGGTACCCAACAGG+AGG + chr4.4:41937941-41937960 None:intergenic 55.0%
CTCTTGAAGCACGCATGGCT+GGG - chr4.4:41936978-41936997 MS.gene021135:CDS 55.0%
CTGCATGCTGCAAGGATGGA+AGG - chr4.4:41937897-41937916 MS.gene021135:CDS 55.0%
CTTTGCGACACGGTTCAAGG+AGG - chr4.4:41937585-41937604 MS.gene021135:CDS 55.0%
GGGGTGCAGAAAGGAAGAGA+AGG - chr4.4:41936709-41936728 MS.gene021135:CDS 55.0%
TCGAGAGGCCAGAGACATAC+AGG - chr4.4:41937746-41937765 MS.gene021135:CDS 55.0%
! AGCGATTTCGGTGTAACCGG+TGG - chr4.4:41936332-41936351 MS.gene021135:CDS 55.0%
! GATTTCGGTGTAACCGGTGG+TGG - chr4.4:41936335-41936354 MS.gene021135:CDS 55.0%
!! CACTGGGTGATGGATCTCAG+AGG - chr4.4:41936933-41936952 MS.gene021135:CDS 55.0%
!! CTCTGAGATCCATCACCCAG+TGG + chr4.4:41936935-41936954 None:intergenic 55.0%
!! GCAATTTGAGAGGGGTGTCG+AGG - chr4.4:41936412-41936431 MS.gene021135:CDS 55.0%
!! TCTGGTGGTGGAAAAAGCCG+TGG - chr4.4:41936779-41936798 MS.gene021135:CDS 55.0%
AACTCCCCCAACCTGGCTTC+AGG - chr4.4:41937269-41937288 MS.gene021135:CDS 60.0%
AGACAGGGCTTCGCCTAGCA+AGG - chr4.4:41937311-41937330 MS.gene021135:CDS 60.0%
CCCTGTCTCCTGGACTCTCT+CGG + chr4.4:41937299-41937318 None:intergenic 60.0%
CCGAGAGAGTCCAGGAGACA+GGG - chr4.4:41937296-41937315 MS.gene021135:CDS 60.0%
GCTCTTGAAGCACGCATGGC+TGG - chr4.4:41936977-41936996 MS.gene021135:CDS 60.0%
GCTTGGAACGGGGTGCAGAA+AGG - chr4.4:41936700-41936719 MS.gene021135:CDS 60.0%
GGGAGGAAGAATCACGAGCG+GGG - chr4.4:41936581-41936600 MS.gene021135:CDS 60.0%
GGGATAGAACTCCCCCAACC+TGG - chr4.4:41937262-41937281 MS.gene021135:CDS 60.0%
GGGGAGGAAGAATCACGAGC+GGG - chr4.4:41936580-41936599 MS.gene021135:CDS 60.0%
GGGGGAGGAAGAATCACGAG+CGG - chr4.4:41936579-41936598 MS.gene021135:CDS 60.0%
TTTCAGCTGAGTCGAGGGGG+AGG - chr4.4:41936564-41936583 MS.gene021135:CDS 60.0%
!! GGGTGATGGATCTCAGAGGC+TGG - chr4.4:41936937-41936956 MS.gene021135:CDS 60.0%
AGCAGCTTAGGAGGTCCCCC+AGG + chr4.4:41937235-41937254 None:intergenic 65.0%
CTAGGCGAAGCCCTGTCTCC+TGG + chr4.4:41937309-41937328 None:intergenic 65.0%
GAAGCACGCATGGCTGGGAC+TGG - chr4.4:41936983-41937002 MS.gene021135:CDS 65.0%
GCAGGCCTGAAGCCAGGTTG+GGG + chr4.4:41937277-41937296 None:intergenic 65.0%
GCCGAGAGAGTCCAGGAGAC+AGG - chr4.4:41937295-41937314 MS.gene021135:CDS 65.0%
GGCAGGCCTGAAGCCAGGTT+GGG + chr4.4:41937278-41937297 None:intergenic 65.0%
GTCTCCTGGACTCTCTCGGC+AGG + chr4.4:41937295-41937314 None:intergenic 65.0%
! CAGGCCTGAAGCCAGGTTGG+GGG + chr4.4:41937276-41937295 None:intergenic 65.0%
CAGGCCTGCCGAGAGAGTCC+AGG - chr4.4:41937288-41937307 MS.gene021135:CDS 70.0%
CGGCAGGCCTGAAGCCAGGT+TGG + chr4.4:41937279-41937298 None:intergenic 70.0%
CTCTCGGCAGGCCTGAAGCC+AGG + chr4.4:41937283-41937302 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 41935927 41937960 41935927 ID=MS.gene021135
chr4.4 mRNA 41935927 41937960 41935927 ID=MS.gene021135.t1;Parent=MS.gene021135
chr4.4 exon 41935927 41937960 41935927 ID=MS.gene021135.t1.exon1;Parent=MS.gene021135.t1
chr4.4 CDS 41935927 41937960 41935927 ID=cds.MS.gene021135.t1;Parent=MS.gene021135.t1
Gene Sequence

>MS.gene021135

ATGGATAACCCTTTTTTTCAACCAGCTCCAAACAATGCTACAGAAGAAGAAGATTCACCTTTGGATGAAATTGATTTCTCTTCCACTGTTCTTCGTTACATTAACCAAATGCTTATGGAAGAAGACATGGATATGAAACCATGTATGTTTCATGATTCATTGGCTTTACAAGCTGCTGAAAAATCTTTCTATGAAGTCATTGGTGAGACTTACCCTTCTTCTGTACAAAGCCCTGATGATAGTTTTAACAGTAATTTCAGTAGTAGTAATTCTGTTGAGGTTGAATCATATTTGAGTAATTTTGATGTTTCTGAGCATAATCCTTCTATATTGCAAACCCATTTTCCTGTTGATTTTGTTTTTCAAGCTACTTCAATGAATGGTAGTAGTAGTAGTAATAGCAGTAGCGATTTCGGTGTAACCGGTGGTGGATTTAAGGATGGATTTCCTGATTCAAACTTGCTTAGTAAGAATGAGTCTGTGTTGCAATTTGAGAGGGGTGTCGAGGAAGCTAATAAGTTTCTTCCTAAAGTGAATTCCTTGGTTGTTGATTTGGAAAATAACCCTTTTGTTCCTTCTTTTAGAAGGGAGGTTCAGGAGGTAGTGGTTGAGAGGGAGAGCAATGAAAGAGAACATTTTTCAGCTGAGTCGAGGGGGAGGAAGAATCACGAGCGGGGAGATGAATTGAGTTTACAAGATGAGAGAAGTAACAAACAATCAGCTGTTTATACTGATGATGACAGTGAGCTATCGGAGCTGTTTGATAAGGTGCTGCTTGGAACGGGGTGCAGAAAGGAAGAGAAGGCTAATGGGTCGGATACGAGTGTGCAGCAGAAAGAAGAAGCAAATAATTCTGGTGGTGGAAAAAGCCGTGGTAAGAAACAAGGCAACAAGAAGGGTGTTGTGGATCTGAGGACAATGTTGGTTCTATGTGCACAATATGTTTCTTCTGATGATCGTGCAAATGCTAATGAGTTATTGAGGCAGATAAGGCAATATTCTTCTCCACTGGGTGATGGATCTCAGAGGCTGGCACATTGCTTTGCGAATGCTCTTGAAGCACGCATGGCTGGGACTGGAACTCAGATTTATACTGCTTTATACTCCAAAAGAAACTCTGCTGCCGACATGGTGAAAGCGTACCAAATGTATATTGAAGCCTGTCCATTCAAGAAGCTTGCATTCATTTTCGCGAACCATACAATTTTGAATCTAGCGAAGGAAGTAGAAACTCTCCACATTGTAGATTTTGGCATCCGTTACGGCTTTCAATGGCCTGCCCTTATTTATCGTTTATCAAAACGACCTGGGGGACCTCCTAAGCTGCTCTTGACAGGGATAGAACTCCCCCAACCTGGCTTCAGGCCTGCCGAGAGAGTCCAGGAGACAGGGCTTCGCCTAGCAAGGTATTGTGAACGTTTTAATGTTCCATTTGAGTTCAATGCTATTGCACAGAAATGGGAAACCATCAAAGTTGAGGACTTGAAGATAAAGAAAAATGAACTTCTTGTGGTGAATTCTGTTTGTCGGCTTAAAAATTTACTTGACGAGACAGTTGTGTTGAATAGTCCCAGGGATGCTGTTTTGAAATTAATTAGGGACGCAAATCCCAATATCTTTATACATACTACTGTCAATGGGAGCTACAATGCCCCATTCTTTGCGACACGGTTCAAGGAGGCTCTTTTCAATTACTCTACAATGTTTGATGTGCTTGACATCAATGTTGCTCGTGAAGATCAAACGAGGTTGATGTTTGAGAAAGAGTTCTGGGGGAGGGAAGTAATGAATATTATAGCTTGTGAAGGTTCTCAGAGGGTCGAGAGGCCAGAGACATACAGGAAATGGAAGGTTCGGAATATAAGGGCTGGATTTAAGCAACTCCCCTTGGATAAACATCTCATTAACAAGTTAAGATGCAAGTTGAAAGATGTGTATCATAGTGATTTTATGCTTGTTGAAGATGGAAACTGCATGCTGCAAGGATGGAAGGGCCGAATAATTTACGCTTCCTCCTGTTGGGTACCTGCATAG
Protein sequence

>MS.gene021135.t1

MDNPFFQPAPNNATEEEDSPLDEIDFSSTVLRYINQMLMEEDMDMKPCMFHDSLALQAAEKSFYEVIGETYPSSVQSPDDSFNSNFSSSNSVEVESYLSNFDVSEHNPSILQTHFPVDFVFQATSMNGSSSSNSSSDFGVTGGGFKDGFPDSNLLSKNESVLQFERGVEEANKFLPKVNSLVVDLENNPFVPSFRREVQEVVVERESNEREHFSAESRGRKNHERGDELSLQDERSNKQSAVYTDDDSELSELFDKVLLGTGCRKEEKANGSDTSVQQKEEANNSGGGKSRGKKQGNKKGVVDLRTMLVLCAQYVSSDDRANANELLRQIRQYSSPLGDGSQRLAHCFANALEARMAGTGTQIYTALYSKRNSAADMVKAYQMYIEACPFKKLAFIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLLLTGIELPQPGFRPAERVQETGLRLARYCERFNVPFEFNAIAQKWETIKVEDLKIKKNELLVVNSVCRLKNLLDETVVLNSPRDAVLKLIRDANPNIFIHTTVNGSYNAPFFATRFKEALFNYSTMFDVLDINVAREDQTRLMFEKEFWGREVMNIIACEGSQRVERPETYRKWKVRNIRAGFKQLPLDKHLINKLRCKLKDVYHSDFMLVEDGNCMLQGWKGRIIYASSCWVPA