Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021192.t1 | RHN51648.1 | 92.8 | 221 | 15 | 1 | 20 | 239 | 1 | 221 | 1.00E-111 | 412.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021192.t1 | Q5N6V8 | 38.0 | 237 | 116 | 4 | 33 | 239 | 6 | 241 | 7.0e-37 | 155.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021192.t1 | A0A072U908 | 92.8 | 221 | 15 | 1 | 20 | 239 | 1 | 221 | 7.3e-112 | 412.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene021192.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021192.t1 | MTR_6g045327 | 92.760 | 221 | 15 | 1 | 20 | 239 | 1 | 221 | 7.60e-153 | 430 |
MS.gene021192.t1 | MTR_4g021760 | 48.649 | 222 | 108 | 3 | 20 | 239 | 1 | 218 | 4.06e-61 | 194 |
MS.gene021192.t1 | MTR_8g093040 | 49.545 | 220 | 97 | 3 | 20 | 239 | 1 | 206 | 3.66e-60 | 191 |
MS.gene021192.t1 | MTR_4g021790 | 47.368 | 209 | 107 | 2 | 33 | 239 | 10 | 217 | 3.82e-57 | 183 |
MS.gene021192.t1 | MTR_4g021845 | 44.595 | 222 | 116 | 3 | 20 | 239 | 1 | 217 | 1.74e-55 | 177 |
MS.gene021192.t1 | MTR_1g032570 | 41.797 | 256 | 110 | 5 | 16 | 239 | 1 | 249 | 2.29e-55 | 187 |
MS.gene021192.t1 | MTR_4g021855 | 46.411 | 209 | 109 | 2 | 33 | 239 | 10 | 217 | 1.18e-54 | 177 |
MS.gene021192.t1 | MTR_8g079940 | 37.607 | 234 | 119 | 3 | 33 | 239 | 25 | 258 | 5.73e-45 | 158 |
MS.gene021192.t1 | MTR_4g121020 | 37.712 | 236 | 118 | 3 | 32 | 239 | 30 | 264 | 6.32e-45 | 159 |
MS.gene021192.t1 | MTR_4g121020 | 37.712 | 236 | 118 | 3 | 32 | 239 | 30 | 264 | 6.70e-45 | 159 |
MS.gene021192.t1 | MTR_2g034960 | 36.400 | 250 | 132 | 3 | 16 | 239 | 12 | 260 | 1.35e-44 | 158 |
MS.gene021192.t1 | MTR_8g105600 | 41.048 | 229 | 112 | 3 | 33 | 239 | 9 | 236 | 3.09e-44 | 156 |
MS.gene021192.t1 | MTR_3g086100 | 36.555 | 238 | 122 | 4 | 31 | 239 | 11 | 248 | 5.35e-44 | 155 |
MS.gene021192.t1 | MTR_4g131600 | 32.773 | 238 | 136 | 2 | 26 | 239 | 13 | 250 | 2.37e-38 | 140 |
MS.gene021192.t1 | MTR_5g055260 | 41.063 | 207 | 96 | 5 | 33 | 239 | 10 | 190 | 1.71e-36 | 129 |
MS.gene021192.t1 | MTR_3g106220 | 34.440 | 241 | 125 | 4 | 32 | 239 | 7 | 247 | 2.62e-36 | 135 |
MS.gene021192.t1 | MTR_1g013170 | 34.874 | 238 | 124 | 4 | 32 | 239 | 4 | 240 | 2.67e-35 | 131 |
MS.gene021192.t1 | MTR_0450s0040 | 33.175 | 211 | 133 | 1 | 37 | 239 | 8 | 218 | 2.84e-35 | 128 |
MS.gene021192.t1 | MTR_3g102600 | 32.243 | 214 | 112 | 1 | 26 | 239 | 1 | 181 | 6.85e-35 | 123 |
MS.gene021192.t1 | MTR_4g131580 | 31.489 | 235 | 135 | 2 | 31 | 239 | 15 | 249 | 1.98e-34 | 130 |
MS.gene021192.t1 | MTR_3g102600 | 32.243 | 214 | 112 | 1 | 26 | 239 | 1 | 181 | 2.57e-34 | 123 |
MS.gene021192.t1 | MTR_4g131570 | 30.159 | 252 | 144 | 3 | 20 | 239 | 1 | 252 | 6.30e-34 | 128 |
MS.gene021192.t1 | MTR_1g032570 | 40.449 | 178 | 74 | 4 | 94 | 239 | 3 | 180 | 1.47e-33 | 127 |
MS.gene021192.t1 | MTR_7g117705 | 32.068 | 237 | 132 | 3 | 32 | 239 | 4 | 240 | 7.55e-33 | 124 |
MS.gene021192.t1 | MTR_6g016850 | 42.405 | 158 | 88 | 3 | 28 | 183 | 4 | 160 | 1.31e-32 | 117 |
MS.gene021192.t1 | MTR_2g450070 | 29.804 | 255 | 141 | 3 | 23 | 239 | 8 | 262 | 4.00e-32 | 124 |
MS.gene021192.t1 | MTR_2g450070 | 29.804 | 255 | 141 | 3 | 23 | 239 | 8 | 262 | 4.44e-32 | 124 |
MS.gene021192.t1 | MTR_1g013180 | 30.924 | 249 | 143 | 2 | 20 | 239 | 143 | 391 | 6.93e-31 | 120 |
MS.gene021192.t1 | MTR_7g026400 | 36.458 | 192 | 105 | 2 | 63 | 239 | 17 | 206 | 3.07e-30 | 118 |
MS.gene021192.t1 | MTR_3g102590 | 33.333 | 216 | 118 | 3 | 26 | 239 | 1 | 192 | 3.56e-30 | 111 |
MS.gene021192.t1 | MTR_3g102590 | 33.333 | 216 | 118 | 3 | 26 | 239 | 1 | 192 | 1.02e-29 | 111 |
MS.gene021192.t1 | MTR_3g086100 | 35.593 | 177 | 85 | 4 | 92 | 239 | 1 | 177 | 2.50e-29 | 115 |
MS.gene021192.t1 | MTR_4g023980 | 40.714 | 140 | 75 | 3 | 80 | 214 | 36 | 172 | 2.89e-28 | 106 |
MS.gene021192.t1 | MTR_3g102600 | 30.909 | 165 | 81 | 1 | 75 | 239 | 1 | 132 | 3.45e-26 | 99.8 |
MS.gene021192.t1 | MTR_3g102600 | 30.909 | 165 | 81 | 1 | 75 | 239 | 1 | 132 | 2.45e-25 | 98.6 |
MS.gene021192.t1 | MTR_4g121020 | 34.839 | 155 | 74 | 1 | 112 | 239 | 6 | 160 | 4.69e-24 | 100 |
MS.gene021192.t1 | MTR_5g014040 | 34.109 | 129 | 81 | 2 | 31 | 158 | 12 | 137 | 4.45e-14 | 71.6 |
MS.gene021192.t1 | MTR_5g014040 | 34.109 | 129 | 81 | 2 | 31 | 158 | 12 | 137 | 4.60e-14 | 71.2 |
MS.gene021192.t1 | MTR_1g013160 | 26.174 | 149 | 81 | 2 | 95 | 214 | 1 | 149 | 2.42e-13 | 66.2 |
MS.gene021192.t1 | MTR_4g064730 | 52.941 | 51 | 24 | 0 | 189 | 239 | 130 | 180 | 3.66e-11 | 62.4 |
MS.gene021192.t1 | MTR_5g041350 | 54.902 | 51 | 22 | 1 | 190 | 239 | 15 | 65 | 4.27e-11 | 62.4 |
MS.gene021192.t1 | MTR_7g089010 | 52.941 | 51 | 24 | 0 | 189 | 239 | 90 | 140 | 6.04e-11 | 61.6 |
MS.gene021192.t1 | MTR_6g088950 | 29.231 | 130 | 86 | 2 | 72 | 201 | 43 | 166 | 7.84e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene021192.t1 | AT2G01760 | 37.295 | 244 | 117 | 4 | 32 | 239 | 6 | 249 | 6.73e-47 | 160 |
MS.gene021192.t1 | AT1G67710 | 38.034 | 234 | 115 | 5 | 36 | 239 | 10 | 243 | 1.44e-41 | 149 |
MS.gene021192.t1 | AT2G01760 | 33.456 | 272 | 117 | 5 | 32 | 239 | 6 | 277 | 3.87e-41 | 145 |
MS.gene021192.t1 | AT3G16857 | 33.716 | 261 | 124 | 5 | 27 | 239 | 27 | 286 | 2.50e-40 | 147 |
MS.gene021192.t1 | AT3G16857 | 33.716 | 261 | 124 | 5 | 27 | 239 | 27 | 286 | 2.93e-40 | 147 |
MS.gene021192.t1 | AT4G31920 | 34.764 | 233 | 138 | 4 | 20 | 239 | 1 | 232 | 8.38e-35 | 130 |
MS.gene021192.t1 | AT2G25180 | 31.837 | 245 | 141 | 3 | 20 | 239 | 1 | 244 | 1.38e-34 | 130 |
MS.gene021192.t1 | AT3G16857 | 32.407 | 216 | 99 | 3 | 71 | 239 | 1 | 216 | 1.62e-32 | 124 |
MS.gene021192.t1 | AT5G49240 | 30.120 | 249 | 144 | 5 | 22 | 241 | 27 | 274 | 5.99e-31 | 116 |
MS.gene021192.t1 | AT5G58080 | 31.148 | 244 | 143 | 4 | 20 | 239 | 1 | 243 | 1.03e-30 | 119 |
MS.gene021192.t1 | AT2G01760 | 35.912 | 181 | 80 | 4 | 95 | 239 | 4 | 184 | 9.34e-30 | 113 |
MS.gene021192.t1 | AT1G67710 | 37.079 | 178 | 82 | 5 | 92 | 239 | 1 | 178 | 7.41e-28 | 110 |
MS.gene021192.t1 | AT3G62670 | 29.762 | 252 | 144 | 8 | 16 | 239 | 19 | 265 | 2.97e-27 | 108 |
MS.gene021192.t1 | AT1G49190 | 27.600 | 250 | 147 | 7 | 23 | 239 | 20 | 268 | 1.22e-24 | 101 |
MS.gene021192.t1 | AT1G67710 | 37.975 | 158 | 68 | 5 | 112 | 239 | 12 | 169 | 5.21e-22 | 94.4 |
MS.gene021192.t1 | AT5G07210 | 25.573 | 262 | 130 | 6 | 37 | 239 | 16 | 271 | 6.26e-16 | 77.0 |
MS.gene021192.t1 | AT1G49190 | 28.148 | 135 | 97 | 0 | 23 | 157 | 20 | 154 | 2.16e-14 | 72.4 |
MS.gene021192.t1 | AT5G07210 | 26.872 | 227 | 101 | 6 | 72 | 239 | 59 | 279 | 4.16e-14 | 71.6 |
MS.gene021192.t1 | AT5G59570 | 32.773 | 119 | 77 | 2 | 121 | 239 | 75 | 190 | 2.69e-12 | 65.5 |
MS.gene021192.t1 | AT5G59570 | 32.773 | 119 | 77 | 2 | 121 | 239 | 75 | 190 | 2.69e-12 | 65.5 |
MS.gene021192.t1 | AT2G40970 | 52.941 | 51 | 24 | 0 | 189 | 239 | 104 | 154 | 2.25e-11 | 62.4 |
MS.gene021192.t1 | AT5G05090 | 52.941 | 51 | 24 | 0 | 189 | 239 | 80 | 130 | 4.11e-11 | 62.0 |
MS.gene021192.t1 | AT3G46640 | 52.941 | 51 | 24 | 0 | 189 | 239 | 143 | 193 | 5.05e-11 | 62.0 |
MS.gene021192.t1 | AT3G46640 | 52.941 | 51 | 24 | 0 | 189 | 239 | 143 | 193 | 5.07e-11 | 62.0 |
MS.gene021192.t1 | AT3G46640 | 52.941 | 51 | 24 | 0 | 189 | 239 | 143 | 193 | 5.07e-11 | 62.0 |
MS.gene021192.t1 | AT3G10760 | 52.941 | 51 | 24 | 0 | 189 | 239 | 104 | 154 | 5.97e-11 | 62.0 |
MS.gene021192.t1 | AT2G27070 | 50.909 | 55 | 26 | 1 | 185 | 239 | 221 | 274 | 6.90e-11 | 62.0 |
MS.gene021192.t1 | AT5G60100 | 28.800 | 125 | 86 | 1 | 34 | 155 | 61 | 185 | 8.18e-11 | 62.0 |
MS.gene021192.t1 | AT3G04030 | 54.902 | 51 | 22 | 1 | 190 | 239 | 45 | 95 | 9.79e-11 | 61.2 |
Find 42 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAATTCTTAGAGGGTTTA+AGG | 0.118099 | 6.1:-42877941 | MS.gene021192:CDS |
CTAAGGGCTGTGAATCAATT+TGG | 0.229550 | 6.1:-42877030 | MS.gene021192:CDS |
CAATGCATCAAGAATTTCTA+AGG | 0.275756 | 6.1:-42877047 | MS.gene021192:CDS |
GCATATTGCTAGCCATTTAC+AGG | 0.279083 | 6.1:-42876849 | MS.gene021192:intron |
TGCTTTAATCCCTTCTTCAA+TGG | 0.341450 | 6.1:-42877994 | MS.gene021192:CDS |
CCCGTTTGCAATAGCCTTCA+AGG | 0.349006 | 6.1:+42877269 | None:intergenic |
ACTTCCCCAACAATTCTTAG+AGG | 0.375785 | 6.1:-42877949 | MS.gene021192:CDS |
TGACAGGAATATTGATTTGT+TGG | 0.378211 | 6.1:+42877593 | None:intergenic |
GATCAAATTCATGTTGATAA+TGG | 0.381612 | 6.1:-42877153 | MS.gene021192:CDS |
TAAACCCTCTAAGAATTGTT+GGG | 0.382270 | 6.1:+42877944 | None:intergenic |
ACAATTCTTAGAGGGTTTAA+GGG | 0.385698 | 6.1:-42877940 | MS.gene021192:CDS |
TGATTTGTTGGGTAATTTGT+TGG | 0.402510 | 6.1:+42877605 | None:intergenic |
ATTCAAGTGATGAATGTTCC+TGG | 0.409770 | 6.1:-42876884 | MS.gene021192:CDS |
CCTTGAAGGCTATTGCAAAC+GGG | 0.420675 | 6.1:-42877269 | MS.gene021192:CDS |
TTAAACCCTCTAAGAATTGT+TGG | 0.427205 | 6.1:+42877943 | None:intergenic |
GCCATCGTTGAAAAGTCAAT+TGG | 0.430946 | 6.1:-42877882 | MS.gene021192:CDS |
TCCTTGAAGGCTATTGCAAA+CGG | 0.433944 | 6.1:-42877270 | MS.gene021192:CDS |
GACAGGAATATTGATTTGTT+GGG | 0.435755 | 6.1:+42877594 | None:intergenic |
TGTGCAGTGATGGGTGTTGA+TGG | 0.436154 | 6.1:-42877306 | MS.gene021192:intron |
AATTTGTTGGAGAAAATCAT+AGG | 0.440238 | 6.1:+42877618 | None:intergenic |
AACGATGGCATTGTGGATAG+TGG | 0.451069 | 6.1:+42877896 | None:intergenic |
ATCAACAAGTGCATCCTTGA+AGG | 0.472077 | 6.1:-42877283 | MS.gene021192:CDS |
GTTGAAAGAGCCATTGAAGA+AGG | 0.472839 | 6.1:+42877984 | None:intergenic |
GGCAAAGAATCTTACTATCA+AGG | 0.473824 | 6.1:+42877007 | None:intergenic |
AATGGCTCTTTCAACTGAGA+TGG | 0.494149 | 6.1:-42877976 | MS.gene021192:CDS |
TCATGTTGATGTGGTTGAAA+AGG | 0.515561 | 6.1:-42877118 | MS.gene021192:CDS |
CGTTGAAAAGTCAATTGGAT+GGG | 0.523926 | 6.1:-42877877 | MS.gene021192:CDS |
TATATGTTCTTACTAATGAC+AGG | 0.536013 | 6.1:+42877577 | None:intergenic |
CTTCCCCAACAATTCTTAGA+GGG | 0.553790 | 6.1:-42877948 | MS.gene021192:CDS |
ACATGTGCAAACACGTTCCA+AGG | 0.562980 | 6.1:-42877200 | MS.gene021192:CDS |
TTGAAAGAGCCATTGAAGAA+GGG | 0.568093 | 6.1:+42877985 | None:intergenic |
TTGATTAGGTCATCACTCAA+AGG | 0.569533 | 6.1:+42877225 | None:intergenic |
TCGTTGAAAAGTCAATTGGA+TGG | 0.580260 | 6.1:-42877878 | MS.gene021192:CDS |
TTCACTCTTCACCTCAACAA+CGG | 0.596457 | 6.1:-42878019 | MS.gene021192:CDS |
TCAATTGGATGGGATTACAA+AGG | 0.596849 | 6.1:-42877867 | MS.gene021192:intron |
AAACCCTCTAAGAATTGTTG+GGG | 0.603847 | 6.1:+42877945 | None:intergenic |
CTTGAAGGCTATTGCAAACG+GGG | 0.604122 | 6.1:-42877268 | MS.gene021192:CDS |
AAAAGAAGCATTAGAGCATG+TGG | 0.613637 | 6.1:+42877717 | None:intergenic |
AATGCATCAAGAATTTCTAA+GGG | 0.619626 | 6.1:-42877046 | MS.gene021192:CDS |
ATTAAAGCAAACCGTTGTTG+AGG | 0.620227 | 6.1:+42878008 | None:intergenic |
AAAAGAATCTCATGTTGATG+TGG | 0.621750 | 6.1:-42877127 | MS.gene021192:CDS |
ATATGCTCTCTTGTCAAACC+AGG | 0.644357 | 6.1:+42876866 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGAAAGAAAAAAAAAAAG+TGG | + | chr6.1:42877805-42877824 | None:intergenic | 15.0% |
!!! | ATCACTTGAATAATTTTTTT+TGG | + | chr6.1:42877895-42877914 | None:intergenic | 15.0% |
!!! | GTTTGTTTTTTAGATTAATT+TGG | - | chr6.1:42877961-42877980 | MS.gene021192:CDS | 15.0% |
! | AATGCATCAAGAATTTCTAA+GGG | - | chr6.1:42877742-42877761 | MS.gene021192:intron | 25.0% |
! | CAAAAAAGAACCGTTTAAAA+TGG | - | chr6.1:42877711-42877730 | MS.gene021192:CDS | 25.0% |
! | CTAAAAAACAAACCTGTAAA+TGG | + | chr6.1:42877954-42877973 | None:intergenic | 25.0% |
! | TATATGTTCTTACTAATGAC+AGG | + | chr6.1:42877214-42877233 | None:intergenic | 25.0% |
!! | GATCAAATTCATGTTGATAA+TGG | - | chr6.1:42877635-42877654 | MS.gene021192:CDS | 25.0% |
!!! | AATGTCTGTTTTTGCTTTAT+TGG | - | chr6.1:42877328-42877347 | MS.gene021192:intron | 25.0% |
!!! | AATTTGTTGGAGAAAATCAT+AGG | + | chr6.1:42877173-42877192 | None:intergenic | 25.0% |
!!! | GTTTTGCATCTGAAATATAA+GGG | + | chr6.1:42877873-42877892 | None:intergenic | 25.0% |
!!! | TTAAACGGTTCTTTTTTGTT+GGG | + | chr6.1:42877709-42877728 | None:intergenic | 25.0% |
!!! | TTTAAACGGTTCTTTTTTGT+TGG | + | chr6.1:42877710-42877729 | None:intergenic | 25.0% |
AAAAGAATCTCATGTTGATG+TGG | - | chr6.1:42877661-42877680 | MS.gene021192:CDS | 30.0% | |
AACAATTCTTAGAGGGTTTA+AGG | - | chr6.1:42876847-42876866 | MS.gene021192:intron | 30.0% | |
ACAATTCTTAGAGGGTTTAA+GGG | - | chr6.1:42876848-42876867 | MS.gene021192:intron | 30.0% | |
CAATGCATCAAGAATTTCTA+AGG | - | chr6.1:42877741-42877760 | MS.gene021192:intron | 30.0% | |
! | GTTTCATTCAAAGTTTTCCT+TGG | + | chr6.1:42877608-42877627 | None:intergenic | 30.0% |
! | TAAACCCTCTAAGAATTGTT+GGG | + | chr6.1:42876847-42876866 | None:intergenic | 30.0% |
! | TTAAACCCTCTAAGAATTGT+TGG | + | chr6.1:42876848-42876867 | None:intergenic | 30.0% |
! | TTGCTTGAGACCATTTTAAA+CGG | + | chr6.1:42877724-42877743 | None:intergenic | 30.0% |
!! | GACAGGAATATTGATTTGTT+GGG | + | chr6.1:42877197-42877216 | None:intergenic | 30.0% |
!! | GGTTTTGCATCTGAAATATA+AGG | + | chr6.1:42877874-42877893 | None:intergenic | 30.0% |
!! | GTTTGCACATGTTTTTGATT+AGG | + | chr6.1:42877580-42877599 | None:intergenic | 30.0% |
!! | TGACAGGAATATTGATTTGT+TGG | + | chr6.1:42877198-42877217 | None:intergenic | 30.0% |
!! | TGATTTGTTGGGTAATTTGT+TGG | + | chr6.1:42877186-42877205 | None:intergenic | 30.0% |
!!! | TAAACGGTTCTTTTTTGTTG+GGG | + | chr6.1:42877708-42877727 | None:intergenic | 30.0% |
!!! | TTTTGCATTGACTCTTTTGA+GGG | - | chr6.1:42877090-42877109 | MS.gene021192:CDS | 30.0% |
ATTAAAGCAAACCGTTGTTG+AGG | + | chr6.1:42876783-42876802 | None:intergenic | 35.0% | |
ATTCAAGTGATGAATGTTCC+TGG | - | chr6.1:42877904-42877923 | MS.gene021192:CDS | 35.0% | |
CGTTGAAAAGTCAATTGGAT+GGG | - | chr6.1:42876911-42876930 | MS.gene021192:intron | 35.0% | |
GGCAAAGAATCTTACTATCA+AGG | + | chr6.1:42877784-42877803 | None:intergenic | 35.0% | |
TCAATTGGATGGGATTACAA+AGG | - | chr6.1:42876921-42876940 | MS.gene021192:intron | 35.0% | |
TCATGTTGATGTGGTTGAAA+AGG | - | chr6.1:42877670-42877689 | MS.gene021192:CDS | 35.0% | |
TCGTTGAAAAGTCAATTGGA+TGG | - | chr6.1:42876910-42876929 | MS.gene021192:intron | 35.0% | |
TGCTTTAATCCCTTCTTCAA+TGG | - | chr6.1:42876794-42876813 | MS.gene021192:intron | 35.0% | |
TTGAAAGAGCCATTGAAGAA+GGG | + | chr6.1:42876806-42876825 | None:intergenic | 35.0% | |
TTGATTAGGTCATCACTCAA+AGG | + | chr6.1:42877566-42877585 | None:intergenic | 35.0% | |
! | AAACCCTCTAAGAATTGTTG+GGG | + | chr6.1:42876846-42876865 | None:intergenic | 35.0% |
! | TGCATCTGAAATATAAGGGA+GGG | + | chr6.1:42877869-42877888 | None:intergenic | 35.0% |
! | TTGCATCTGAAATATAAGGG+AGG | + | chr6.1:42877870-42877889 | None:intergenic | 35.0% |
!! | AAAAGAAGCATTAGAGCATG+TGG | + | chr6.1:42877074-42877093 | None:intergenic | 35.0% |
!! | TCCAATTGACTTTTCAACGA+TGG | + | chr6.1:42876910-42876929 | None:intergenic | 35.0% |
!!! | AAACGGTTCTTTTTTGTTGG+GGG | + | chr6.1:42877707-42877726 | None:intergenic | 35.0% |
!!! | CTTTTGCATTGACTCTTTTG+AGG | - | chr6.1:42877089-42877108 | MS.gene021192:CDS | 35.0% |
!!! | TCTGTTTTTGCTTTATTGGC+TGG | - | chr6.1:42877332-42877351 | MS.gene021192:intron | 35.0% |
AATGGCTCTTTCAACTGAGA+TGG | - | chr6.1:42876812-42876831 | MS.gene021192:intron | 40.0% | |
ACTTCCCCAACAATTCTTAG+AGG | - | chr6.1:42876839-42876858 | MS.gene021192:intron | 40.0% | |
ATATGAGTCATGTGCAGTGA+TGG | - | chr6.1:42877472-42877491 | MS.gene021192:intron | 40.0% | |
ATATGCTCTCTTGTCAAACC+AGG | + | chr6.1:42877925-42877944 | None:intergenic | 40.0% | |
ATCAACAAGTGCATCCTTGA+AGG | - | chr6.1:42877505-42877524 | MS.gene021192:intron | 40.0% | |
CTAAGGGCTGTGAATCAATT+TGG | - | chr6.1:42877758-42877777 | MS.gene021192:intron | 40.0% | |
CTTCCCCAACAATTCTTAGA+GGG | - | chr6.1:42876840-42876859 | MS.gene021192:intron | 40.0% | |
GCATATTGCTAGCCATTTAC+AGG | - | chr6.1:42877939-42877958 | MS.gene021192:CDS | 40.0% | |
GCCATCGTTGAAAAGTCAAT+TGG | - | chr6.1:42876906-42876925 | MS.gene021192:CDS | 40.0% | |
GTTGAAAGAGCCATTGAAGA+AGG | + | chr6.1:42876807-42876826 | None:intergenic | 40.0% | |
TATGAGTCATGTGCAGTGAT+GGG | - | chr6.1:42877473-42877492 | MS.gene021192:intron | 40.0% | |
TCCTTGAAGGCTATTGCAAA+CGG | - | chr6.1:42877518-42877537 | MS.gene021192:intron | 40.0% | |
TTCACTCTTCACCTCAACAA+CGG | - | chr6.1:42876769-42876788 | MS.gene021192:intron | 40.0% | |
! | ACTTTTCAACGATGGCATTG+TGG | + | chr6.1:42876902-42876921 | None:intergenic | 40.0% |
! | GCATCTGAAATATAAGGGAG+GGG | + | chr6.1:42877868-42877887 | None:intergenic | 40.0% |
! | GTCAAAAGCGAACGTGATTT+TGG | + | chr6.1:42877300-42877319 | None:intergenic | 40.0% |
!! | ACTCTTTTGAGGGAAGCAAA+GGG | - | chr6.1:42877100-42877119 | MS.gene021192:CDS | 40.0% |
AACGATGGCATTGTGGATAG+TGG | + | chr6.1:42876895-42876914 | None:intergenic | 45.0% | |
ACATGTGCAAACACGTTCCA+AGG | - | chr6.1:42877588-42877607 | MS.gene021192:intron | 45.0% | |
CAATCAGTCACTCAAGCACA+AGG | + | chr6.1:42877408-42877427 | None:intergenic | 45.0% | |
CACACACACTTATGTGCAAC+AGG | - | chr6.1:42877266-42877285 | MS.gene021192:CDS | 45.0% | |
CCTTGAAGGCTATTGCAAAC+GGG | - | chr6.1:42877519-42877538 | MS.gene021192:intron | 45.0% | |
CTTGAAGGCTATTGCAAACG+GGG | - | chr6.1:42877520-42877539 | MS.gene021192:intron | 45.0% | |
GCATTAGAGCATGTGGTAAC+TGG | + | chr6.1:42877067-42877086 | None:intergenic | 45.0% | |
!! | GACTCTTTTGAGGGAAGCAA+AGG | - | chr6.1:42877099-42877118 | MS.gene021192:CDS | 45.0% |
CCCGTTTGCAATAGCCTTCA+AGG | + | chr6.1:42877522-42877541 | None:intergenic | 50.0% | |
!! | TGTGCAGTGATGGGTGTTGA+TGG | - | chr6.1:42877482-42877501 | MS.gene021192:intron | 50.0% |
CAAGCACAAGGCGTGCTGAA+GGG | + | chr6.1:42877396-42877415 | None:intergenic | 55.0% | |
TCAAGCACAAGGCGTGCTGA+AGG | + | chr6.1:42877397-42877416 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 42876756 | 42878054 | 42876756 | ID=MS.gene021192 |
chr6.1 | mRNA | 42876756 | 42878054 | 42876756 | ID=MS.gene021192.t1;Parent=MS.gene021192 |
chr6.1 | exon | 42877868 | 42878054 | 42877868 | ID=MS.gene021192.t1.exon1;Parent=MS.gene021192.t1 |
chr6.1 | CDS | 42877868 | 42878054 | 42877868 | ID=cds.MS.gene021192.t1;Parent=MS.gene021192.t1 |
chr6.1 | exon | 42877590 | 42877742 | 42877590 | ID=MS.gene021192.t1.exon2;Parent=MS.gene021192.t1 |
chr6.1 | CDS | 42877590 | 42877742 | 42877590 | ID=cds.MS.gene021192.t1;Parent=MS.gene021192.t1 |
chr6.1 | exon | 42877022 | 42877321 | 42877022 | ID=MS.gene021192.t1.exon3;Parent=MS.gene021192.t1 |
chr6.1 | CDS | 42877022 | 42877321 | 42877022 | ID=cds.MS.gene021192.t1;Parent=MS.gene021192.t1 |
chr6.1 | exon | 42876850 | 42876926 | 42876850 | ID=MS.gene021192.t1.exon4;Parent=MS.gene021192.t1 |
chr6.1 | CDS | 42876850 | 42876926 | 42876850 | ID=cds.MS.gene021192.t1;Parent=MS.gene021192.t1 |
chr6.1 | exon | 42876756 | 42876767 | 42876756 | ID=MS.gene021192.t1.exon5;Parent=MS.gene021192.t1 |
chr6.1 | CDS | 42876756 | 42876767 | 42876756 | ID=cds.MS.gene021192.t1;Parent=MS.gene021192.t1 |
Gene Sequence |
Protein sequence |